AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84943

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84943.t1 MTR_0305s0020 99.742 774 2 0 1 774 1 774 0.0 1603
MS.gene84943.t1 MTR_7g092770 93.299 776 49 3 1 774 1 775 0.0 1515
MS.gene84943.t1 MTR_4g066150 82.581 775 129 4 1 774 1 770 0.0 1331
MS.gene84943.t1 MTR_3g027150 68.608 790 225 8 7 774 34 822 0.0 1155
MS.gene84943.t1 MTR_4g023460 71.561 756 209 5 24 774 388 1142 0.0 1152
MS.gene84943.t1 MTR_5g010390 68.726 777 233 4 6 774 233 1007 0.0 1147
MS.gene84943.t1 MTR_0291s0010 67.342 790 239 8 3 774 9 797 0.0 1132
MS.gene84943.t1 MTR_4g033215 65.891 774 252 8 8 774 276 1044 0.0 1062
MS.gene84943.t1 MTR_8g031270 60.256 780 292 7 6 774 231 1003 0.0 999
MS.gene84943.t1 MTR_7g076900 59.264 788 291 9 8 774 235 1013 0.0 971
MS.gene84943.t1 MTR_4g057675 58.471 785 303 11 2 774 10 783 0.0 891
MS.gene84943.t1 MTR_4g071870 56.178 785 287 12 2 774 10 749 0.0 858
MS.gene84943.t1 MTR_4g107850 53.351 776 318 14 18 774 288 1038 0.0 806
MS.gene84943.t1 MTR_6g027540 52.294 763 317 13 32 774 274 1009 0.0 783
MS.gene84943.t1 MTR_6g028050 48.231 763 357 13 30 774 284 1026 0.0 736
MS.gene84943.t1 MTR_1g015540 48.590 780 369 13 12 774 9 773 0.0 697
MS.gene84943.t1 MTR_5g096980 41.026 780 424 12 8 774 7 763 0.0 593
MS.gene84943.t1 MTR_4g023250 67.692 130 40 1 644 773 1 128 6.31e-54 182
MS.gene84943.t1 MTR_4g023230 50.000 122 46 1 561 682 49 155 2.78e-32 123
MS.gene84943.t1 MTR_4g023390 50.962 104 29 1 647 750 16 97 3.49e-25 100
MS.gene84943.t1 MTR_4g023240 66.667 60 20 0 495 554 10 69 1.67e-20 86.3
MS.gene84943.t1 MTR_7g052280 53.165 79 12 3 248 325 1 55 2.66e-18 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84943.t1 AT3G57880 91.473 774 65 1 1 774 1 773 0.0 1490
MS.gene84943.t1 AT3G57880 91.473 774 65 1 1 774 1 773 0.0 1490
MS.gene84943.t1 AT3G57880 91.473 774 65 1 1 774 1 773 0.0 1490
MS.gene84943.t1 AT3G57880 91.473 774 65 1 1 774 1 773 0.0 1490
MS.gene84943.t1 AT1G51570 88.531 776 87 2 1 774 1 776 0.0 1442
MS.gene84943.t1 AT5G12970 81.419 775 137 4 1 774 1 769 0.0 1312
MS.gene84943.t1 AT5G06850 68.662 785 228 8 7 774 11 794 0.0 1156
MS.gene84943.t1 AT4G11610 67.224 778 242 5 6 774 238 1011 0.0 1127
MS.gene84943.t1 AT4G11610 67.224 778 242 5 6 774 234 1007 0.0 1127
MS.gene84943.t1 AT4G11610 67.224 778 242 5 6 774 101 874 0.0 1127
MS.gene84943.t1 AT5G48060 65.897 780 252 8 7 774 259 1036 0.0 1103
MS.gene84943.t1 AT1G22610 65.949 790 248 9 1 774 245 1029 0.0 1077
MS.gene84943.t1 AT4G00700 59.079 782 305 6 6 774 227 1006 0.0 966
MS.gene84943.t1 AT4G00700 59.079 782 305 6 6 774 227 1006 0.0 966
MS.gene84943.t1 AT3G61300 58.869 778 291 13 4 774 217 972 0.0 944
MS.gene84943.t1 AT1G04150 58.354 790 288 14 8 774 241 1012 0.0 926
MS.gene84943.t1 AT4G20080 58.161 772 305 11 9 774 15 774 0.0 920
MS.gene84943.t1 AT1G74720 52.506 798 341 13 2 774 297 1081 0.0 823
MS.gene84943.t1 AT3G03680 52.734 768 314 15 32 774 274 1017 0.0 782
MS.gene84943.t1 AT5G17980 48.810 756 356 12 30 774 314 1049 0.0 749
MS.gene84943.t1 AT5G03435 40.927 777 402 25 7 768 6 740 4.04e-168 503
MS.gene84943.t1 AT3G61720 38.985 808 435 21 7 774 6 795 3.03e-167 503
MS.gene84943.t1 AT5G03435 43.154 577 293 17 7 574 6 556 1.13e-140 426
MS.gene84943.t1 AT5G44760 50.750 400 150 9 8 400 5 364 1.52e-122 376
MS.gene84943.t1 AT5G44760 36.496 137 38 1 540 676 364 451 7.02e-20 94.0
MS.gene84943.t1 AT1G03370 28.980 245 155 11 41 281 3 232 1.53e-12 71.6
MS.gene84943.t1 AT1G03370 28.980 245 155 11 41 281 3 232 1.67e-12 72.0

Find 212 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATTCCTTTGCAGTTTA+TGG 0.091860 1.3:-37219919 MS.gene84943:CDS
ACCTCTTCCTGATTGGAATT+TGG 0.179060 1.3:-37218897 MS.gene84943:CDS
TGAATCAGAACTGTTGTAAT+TGG 0.188345 1.3:+37218979 None:intergenic
TCATATCTTGTTCATAATAT+TGG 0.200473 1.3:-37218959 MS.gene84943:CDS
TGCGGCGCCAAAGGACTATC+TGG 0.234328 1.3:+37220374 None:intergenic
GCTTATTGTGTAGCGAAATA+TGG 0.253558 1.3:-37219606 MS.gene84943:CDS
GACTAATTGCTGCGGGAAAA+TGG 0.273762 1.3:-37219029 MS.gene84943:CDS
CCCAAGTGGTGTGAAGAAAA+TGG 0.290205 1.3:-37219337 MS.gene84943:CDS
CTCCTAAGCTTTGGTATTTG+AGG 0.293908 1.3:-37220181 MS.gene84943:CDS
CGGTGCCGCTTAATTTCTTC+AGG 0.299166 1.3:-37218501 MS.gene84943:CDS
GCCAAACAGCTCTGGAAATC+TGG 0.301858 1.3:-37219711 MS.gene84943:CDS
CACGGCCTTCTGACATTGTT+CGG 0.307253 1.3:-37218765 MS.gene84943:CDS
AGAAGGTGGTTATCATGTTT+TGG 0.311177 1.3:-37219772 MS.gene84943:CDS
GCATCCGAGTGCCAAGCTTC+TGG 0.322766 1.3:+37220260 None:intergenic
CACATGAGGGTTTGTCTAGA+AGG 0.326790 1.3:-37219789 MS.gene84943:CDS
TAGAAAGGGTGATAAGGTTA+AGG 0.328443 1.3:-37220333 MS.gene84943:CDS
CCCAATACTTCTTCTTTGTT+CGG 0.334931 1.3:+37219948 None:intergenic
TTTCTCCAAGGATCGGCTTC+AGG 0.340930 1.3:-37220498 MS.gene84943:CDS
TTGGAATTTGGCACTATAGA+TGG 0.341735 1.3:-37218885 MS.gene84943:CDS
CAAGGATCGGCTTCAGGCCT+CGG 0.347948 1.3:-37220492 MS.gene84943:CDS
TCCAGAGCTGTTTGGCCGTT+GGG 0.357398 1.3:+37219718 None:intergenic
CCGAACAAAGAAGAAGTATT+GGG 0.371136 1.3:-37219948 MS.gene84943:CDS
TTCCTTTACCTCTTCCTGAT+TGG 0.374360 1.3:-37218904 MS.gene84943:CDS
CCGATGCTCTTGCAAATATT+AGG 0.375111 1.3:-37220220 MS.gene84943:CDS
GTTAAGCTCGGGAACTATAA+AGG 0.383225 1.3:-37220575 MS.gene84943:CDS
TTTATTTATCTCCTAAGCTT+TGG 0.384714 1.3:-37220190 MS.gene84943:CDS
TTTGCACCTCCAGCTTTGTC+AGG 0.385021 1.3:+37219450 None:intergenic
TCCTAAGCTTTGGTATTTGA+GGG 0.385923 1.3:-37220180 MS.gene84943:CDS
GGCTAATTTCTTCAGAATCA+TGG 0.388398 1.3:-37219064 MS.gene84943:CDS
CCTTTACGTGAGGGTTGTTA+AGG 0.393627 1.3:-37220651 MS.gene84943:CDS
CAGCTCTGGAAATCTGGAAT+TGG 0.397726 1.3:-37219705 MS.gene84943:CDS
GAGAGCCGAGTGTCCATGTT+AGG 0.399650 1.3:+37218847 None:intergenic
GGTTCGATCAAATTTGCAAC+TGG 0.404361 1.3:-37219008 MS.gene84943:CDS
ACAAACAGTGCTGTTGCTCT+TGG 0.411446 1.3:+37218637 None:intergenic
CGTTGCTGCGGAACCATTTG+AGG 0.412932 1.3:-37220006 MS.gene84943:CDS
CGAGGCCTGAAGCCGATCCT+TGG 0.414112 1.3:+37220493 None:intergenic
GCCCAACGGCCAAACAGCTC+TGG 0.415222 1.3:-37219719 MS.gene84943:CDS
GGAATTGGTGTTCTTGAAGT+TGG 0.415516 1.3:-37219690 MS.gene84943:CDS
TTTGAATGAGGTTCCGAAAC+GGG 0.416032 1.3:-37220402 MS.gene84943:CDS
GAGAGTTAATGCTTGCTGTT+TGG 0.419766 1.3:-37220310 MS.gene84943:CDS
TCGGATGCCGCGACTGTTAG+TGG 0.420415 1.3:-37220245 MS.gene84943:CDS
TTGCCTTCAAAGGATGTTAC+CGG 0.421207 1.3:-37220620 MS.gene84943:CDS
GGGTGTATATAGTGCATCTT+TGG 0.421466 1.3:+37219237 None:intergenic
TCTTTCAACAGAAAATCTTC+AGG 0.424219 1.3:+37220755 None:intergenic
AACCAATCCTGAATGGAATC+AGG 0.430195 1.3:-37220528 MS.gene84943:CDS
AGACTTACAGCCAACTGATA+AGG 0.432910 1.3:-37220138 MS.gene84943:CDS
TGTCAGAAGGCCGTGAAGTC+GGG 0.434203 1.3:+37218773 None:intergenic
GGCTGCAGTCTTTGCTGAGC+TGG 0.435790 1.3:-37218666 MS.gene84943:CDS
AAAATCAGCGGCTCCTCAAA+TGG 0.439031 1.3:+37219993 None:intergenic
TTCCAGAGCTGTTTGGCCGT+TGG 0.439868 1.3:+37219717 None:intergenic
GTATAGATTGGAGGATAGAA+AGG 0.441691 1.3:-37220348 MS.gene84943:CDS
TCGGCTTCAGGCCTCGGTGT+TGG 0.445911 1.3:-37220486 MS.gene84943:CDS
CGCTGAGCCACCGCTGAGAA+AGG 0.446361 1.3:-37219145 MS.gene84943:CDS
TCCAGATTTCCAGAGCTGTT+TGG 0.447417 1.3:+37219710 None:intergenic
AAGAAATTAAATTTGCAAGT+AGG 0.449686 1.3:-37219815 MS.gene84943:CDS
AGTTGGGATATTGAGTGCTC+AGG 0.452833 1.3:-37219673 MS.gene84943:CDS
CTTATTGTGTAGCGAAATAT+GGG 0.456005 1.3:-37219605 MS.gene84943:CDS
GACTTACAGCCAACTGATAA+GGG 0.456275 1.3:-37220137 MS.gene84943:CDS
GAATTGGTGTTCTTGAAGTT+GGG 0.456895 1.3:-37219689 MS.gene84943:CDS
AGAAAGGGTGATAAGGTTAA+GGG 0.464699 1.3:-37220332 MS.gene84943:CDS
GGCGCCGCAATGGTATAGAT+TGG 0.464850 1.3:-37220360 MS.gene84943:CDS
TGCTGTTTGGATGGGTACAC+AGG 0.468622 1.3:-37220297 MS.gene84943:CDS
TCGACACATTCCCGACTTCA+CGG 0.468689 1.3:-37218783 MS.gene84943:CDS
TATAGTGCCAAATTCCAATC+AGG 0.471795 1.3:+37218890 None:intergenic
CCTTGCACTGTGATTACAAT+TGG 0.473689 1.3:-37219501 MS.gene84943:CDS
AACTGATAAGGGTAGATATC+CGG 0.474666 1.3:-37220126 MS.gene84943:CDS
CGAGCTGGCTAACGGTCAAC+GGG 0.475727 1.3:+37219217 None:intergenic
AACTCTTCATCAAGTTCGTC+CGG 0.476174 1.3:+37218805 None:intergenic
ATTCAAGGATTGGTAAGGTA+AGG 0.476487 1.3:-37219425 MS.gene84943:CDS
GAAAATGGGTGAAATTCAAT+TGG 0.477497 1.3:-37219322 MS.gene84943:CDS
ACTGTTGGTAAGATAAGTTC+AGG 0.477704 1.3:+37218928 None:intergenic
GCTTCAGGCCTCGGTGTTGG+AGG 0.478715 1.3:-37220483 MS.gene84943:CDS
GGAGGATAGAAAGGGTGATA+AGG 0.479059 1.3:-37220339 MS.gene84943:CDS
GCTAATTTCTTCAGAATCAT+GGG 0.479725 1.3:-37219063 MS.gene84943:CDS
ACCTAGTATTCACTGGTTTG+TGG 0.480851 1.3:+37219883 None:intergenic
AACCTGATTCCATTCAGGAT+TGG 0.483996 1.3:+37220526 None:intergenic
TTCCAATCAGGAAGAGGTAA+AGG 0.484097 1.3:+37218902 None:intergenic
GGCTAAGGACTTGCCTTCAA+AGG 0.484522 1.3:-37220630 MS.gene84943:CDS
CGTGAGGGTTGTTAAGGCTA+AGG 0.486394 1.3:-37220645 MS.gene84943:CDS
CTGGAGGTGCAAAAGATTCA+AGG 0.487820 1.3:-37219440 MS.gene84943:CDS
ATGAAGCATTTCCAGAAGCT+TGG 0.489119 1.3:-37220271 MS.gene84943:CDS
TTTGAGGGTTAATGTGATTG+AGG 0.490505 1.3:-37220165 MS.gene84943:CDS
CGGTCAGAAGGGCCACAACT+TGG 0.491080 1.3:+37218569 None:intergenic
GCGGCGCCAAAGGACTATCT+GGG 0.491089 1.3:+37220375 None:intergenic
GTTGTGAAGGACGACTTCAT+TGG 0.491403 1.3:-37220440 MS.gene84943:CDS
ACCACAAACCAGTGAATACT+AGG 0.491540 1.3:-37219884 MS.gene84943:CDS
GTTGAGTATATGCTTGATGT+TGG 0.492238 1.3:-37219117 MS.gene84943:CDS
AAAGAGACCAAACCCCATCT+TGG 0.497107 1.3:-37220737 MS.gene84943:CDS
CTCAACAAGGTCATATGTGC+TGG 0.498939 1.3:+37220685 None:intergenic
TCCATGTTAGGAGGGTGTCT+TGG 0.501157 1.3:+37218859 None:intergenic
CAAGTTGTGGCCCTTCTGAC+CGG 0.503387 1.3:-37218568 MS.gene84943:CDS
TCCGAACAAAGAAGAAGTAT+TGG 0.503767 1.3:-37219949 MS.gene84943:CDS
GTTAATGCTTGCTGTTTGGA+TGG 0.505912 1.3:-37220306 MS.gene84943:CDS
GGACTAGAATCTCTCTTAGC+AGG 0.511755 1.3:-37220064 MS.gene84943:CDS
TCACGCTGATTCAGCTCATC+CGG 0.512085 1.3:-37218824 MS.gene84943:CDS
TTAGCCAGCTCGACAGTTTG+AGG 0.514684 1.3:-37219206 MS.gene84943:CDS
ATGTCAGAAGGCCGTGAAGT+CGG 0.514758 1.3:+37218772 None:intergenic
AACAGAAAATCTTCAGGCGG+TGG 0.514836 1.3:+37220761 None:intergenic
AGAAGAAAACCAATCCTGAA+TGG 0.515488 1.3:-37220535 MS.gene84943:CDS
ACCCTCAAATACCAAAGCTT+AGG 0.516986 1.3:+37220179 None:intergenic
AAACGTAAATTCCGGTCAGA+AGG 0.518768 1.3:+37218557 None:intergenic
GATCGACTTAGAAGCATAGC+TGG 0.518904 1.3:-37218733 MS.gene84943:CDS
CTTCCGGTAACATCCTTTGA+AGG 0.519491 1.3:+37220617 None:intergenic
GGTGCAAAAGATTCAAGGAT+TGG 0.520817 1.3:-37219435 MS.gene84943:CDS
TCGAGCTGGCTAACGGTCAA+CGG 0.520943 1.3:+37219216 None:intergenic
ATGTCTCAAAACGTAAATTC+CGG 0.524528 1.3:+37218549 None:intergenic
GTTGGGATATTGAGTGCTCA+GGG 0.525396 1.3:-37219672 MS.gene84943:CDS
CCTTAACAACCCTCACGTAA+AGG 0.525933 1.3:+37220651 None:intergenic
CACCACTTGGGTGAAGAACT+AGG 0.526449 1.3:+37219349 None:intergenic
TTAAACCACCTAGTATTCAC+TGG 0.527121 1.3:+37219876 None:intergenic
AGCCGAGTGTCCATGTTAGG+AGG 0.527424 1.3:+37218850 None:intergenic
TTGCATGGTCCTGACAAAGC+TGG 0.527750 1.3:-37219459 MS.gene84943:CDS
GCCAAATTCCAATCAGGAAG+AGG 0.528138 1.3:+37218896 None:intergenic
CTATACCATTGCGGCGCCAA+AGG 0.532688 1.3:+37220365 None:intergenic
AGCGTACGGATCACAACTTC+CGG 0.532790 1.3:+37220601 None:intergenic
AGCATGCAATCAGTTCTTGC+AGG 0.532832 1.3:+37218472 None:intergenic
TTCCTTTGCAGTTTATGGAT+AGG 0.533408 1.3:-37219914 MS.gene84943:CDS
CCAAGTGGTGTGAAGAAAAT+GGG 0.533679 1.3:-37219336 MS.gene84943:CDS
ATTTGAATGAGGTTCCGAAA+CGG 0.535448 1.3:-37220403 MS.gene84943:CDS
TGCAAGTAGGATTCACATGA+GGG 0.537596 1.3:-37219802 MS.gene84943:CDS
TTCTTCTCATACTCCACATG+TGG 0.540825 1.3:+37219091 None:intergenic
AAGAAATTAAGCGGCACCGA+TGG 0.545420 1.3:+37218505 None:intergenic
AGAAGGGCCACAACTTGGAA+TGG 0.547838 1.3:+37218574 None:intergenic
GTGAAGAACTAGGAGTGGAT+AGG 0.551635 1.3:+37219359 None:intergenic
GCCAAGACACCCTCCTAACA+TGG 0.551812 1.3:-37218860 MS.gene84943:CDS
CCGTACGCTGAAGTTAAGCT+CGG 0.557320 1.3:-37220587 MS.gene84943:CDS
TGTGTGGTTTGATTTGAATG+AGG 0.557487 1.3:-37220414 MS.gene84943:CDS
TGCCGCTTAATTTCTTCAGG+AGG 0.557905 1.3:-37218498 MS.gene84943:CDS
GGATTTGATGTTCGTTGCTG+CGG 0.557925 1.3:-37220018 MS.gene84943:CDS
TAGCGAAATATGGGCAGAAG+TGG 0.558621 1.3:-37219596 MS.gene84943:CDS
AAAAGATTCAAGGATTGGTA+AGG 0.560457 1.3:-37219430 MS.gene84943:CDS
CCTAATATTTGCAAGAGCAT+CGG 0.563372 1.3:+37220220 None:intergenic
AGACCAAACCCCATCTTGGA+GGG 0.563491 1.3:-37220733 MS.gene84943:CDS
GAGACCAAACCCCATCTTGG+AGG 0.564193 1.3:-37220734 MS.gene84943:CDS
ACGACTTCATTGGTCGTGTG+TGG 0.564266 1.3:-37220430 MS.gene84943:CDS
TTTGATAATTGTCATTTGCA+TGG 0.564967 1.3:-37219474 MS.gene84943:CDS
ATAGTCCTTTGGCGCCGCAA+TGG 0.565983 1.3:-37220370 MS.gene84943:CDS
CTCCTATCCATAAACTGCAA+AGG 0.566217 1.3:+37219912 None:intergenic
GATGCCTCAAACTGTCGAGC+TGG 0.566280 1.3:+37219202 None:intergenic
ATTTCCAGAAGCTTGGCACT+CGG 0.566792 1.3:-37220264 MS.gene84943:CDS
AAAACATATCATTGTAGAAG+GGG 0.567643 1.3:-37219847 MS.gene84943:CDS
CCGAGCTTAACTTCAGCGTA+CGG 0.569596 1.3:+37220587 None:intergenic
GCCGCAATGGTATAGATTGG+AGG 0.570899 1.3:-37220357 MS.gene84943:CDS
GGTGGAATGAGCAATATACT+TGG 0.572552 1.3:-37219536 MS.gene84943:CDS
GGATATCTACCCTTATCAGT+TGG 0.576446 1.3:+37220128 None:intergenic
TATAGATTGGAGGATAGAAA+GGG 0.576864 1.3:-37220347 MS.gene84943:CDS
TTGAGTGGACTAATTGCTGC+GGG 0.577897 1.3:-37219036 MS.gene84943:CDS
CTCCTAGTTCTTCACCCAAG+TGG 0.579462 1.3:-37219351 MS.gene84943:CDS
CAAACTGTCGAGCTGGCTAA+CGG 0.580833 1.3:+37219209 None:intergenic
TGTGACTCCATTCCAAGTTG+TGG 0.583105 1.3:-37218581 MS.gene84943:CDS
ACTTAGCTACTCAAGGAGAA+AGG 0.584009 1.3:-37218687 MS.gene84943:CDS
TTAATGCTTGCTGTTTGGAT+GGG 0.584454 1.3:-37220305 MS.gene84943:CDS
AACGTAAATTCCGGTCAGAA+GGG 0.586276 1.3:+37218558 None:intergenic
ATCAAATCCTCGTTCCACAA+TGG 0.587304 1.3:+37220032 None:intergenic
ACCAAACCCCATCTTGGAGG+GGG 0.588344 1.3:-37220731 MS.gene84943:CDS
TTGCAAGTAGGATTCACATG+AGG 0.591241 1.3:-37219803 MS.gene84943:CDS
GGAAGCTTATGACGGAACCT+CGG 0.592244 1.3:+37218526 None:intergenic
GGCAGAAGTGGATTCGAACA+AGG 0.592797 1.3:-37219584 MS.gene84943:CDS
TTGATGTTGGTTCCCACATG+TGG 0.601847 1.3:-37219104 MS.gene84943:CDS
AAGAGGTAAAGGAAAACTGT+TGG 0.606111 1.3:+37218913 None:intergenic
CCAATTGTAATCACAGTGCA+AGG 0.607117 1.3:+37219501 None:intergenic
ACTACCTCCTTTCTCAGCGG+TGG 0.608379 1.3:+37219138 None:intergenic
ACCCTCCTAACATGGACACT+CGG 0.608381 1.3:-37218852 MS.gene84943:CDS
GGTAGGATACAGACTGTGGT+TGG 0.612469 1.3:-37218712 MS.gene84943:CDS
CGTACGCTGAAGTTAAGCTC+GGG 0.613305 1.3:-37220586 MS.gene84943:CDS
GACCAAACCCCATCTTGGAG+GGG 0.614269 1.3:-37220732 MS.gene84943:CDS
CGGCGCCAAAGGACTATCTG+GGG 0.614676 1.3:+37220376 None:intergenic
CTCATCCGAACAATGTCAGA+AGG 0.615248 1.3:+37218760 None:intergenic
GGAGGTTACTGTGAAAGATA+AGG 0.615500 1.3:-37220465 MS.gene84943:CDS
TTCAACAGAAAATCTTCAGG+CGG 0.617196 1.3:+37220758 None:intergenic
AGAATCATGGGAGTATTGAG+TGG 0.619315 1.3:-37219051 MS.gene84943:CDS
CAGCAGTGATCTTCGCCCAA+CGG 0.622948 1.3:-37219733 MS.gene84943:CDS
GCCGAGTGTCCATGTTAGGA+GGG 0.626241 1.3:+37218851 None:intergenic
GAATTTGGCACTATAGATGG+AGG 0.626699 1.3:-37218882 MS.gene84943:CDS
AGATGCAATACCTTTACGTG+AGG 0.626728 1.3:-37220661 MS.gene84943:CDS
TTTGAGCAGCGAAAATGCAG+AGG 0.627054 1.3:-37220784 None:intergenic
ATGAGGGTTTGTCTAGAAGG+TGG 0.627125 1.3:-37219786 MS.gene84943:CDS
GTGGAATGAGCAATATACTT+GGG 0.627653 1.3:-37219535 MS.gene84943:CDS
CTTGGGTGAAGAACTAGGAG+TGG 0.630605 1.3:+37219354 None:intergenic
TGAGCCACCGCTGAGAAAGG+AGG 0.630758 1.3:-37219142 MS.gene84943:CDS
GACTTAGAAGCATAGCTGGT+AGG 0.632636 1.3:-37218729 MS.gene84943:CDS
GGTATTGCATCTGCTCAACA+AGG 0.633340 1.3:+37220672 None:intergenic
TAGTGCATCTTTGGCAACAG+AGG 0.634644 1.3:+37219246 None:intergenic
GATGCAATACCTTTACGTGA+GGG 0.638362 1.3:-37220660 MS.gene84943:CDS
GTTCCGTCATAAGCTTCCAT+CGG 0.642868 1.3:-37218521 MS.gene84943:CDS
TTGATAGCTTTATGCCGAGG+TGG 0.644610 1.3:-37219554 MS.gene84943:CDS
TCCTCCAATCTATACCATTG+CGG 0.645041 1.3:+37220356 None:intergenic
GAATGAGCAATATACTTGGG+AGG 0.645094 1.3:-37219532 MS.gene84943:CDS
GAAAGATAAGGATGTTGTGA+AGG 0.645624 1.3:-37220453 MS.gene84943:CDS
GTTGGCGACTTAGCTACTCA+AGG 0.648005 1.3:-37218694 MS.gene84943:CDS
GCAGGAGTATCAATCCATTG+TGG 0.649222 1.3:-37220046 MS.gene84943:CDS
GTGGAGTATGAGAAGAAGCA+AGG 0.650662 1.3:-37219085 MS.gene84943:CDS
ATCGGTTCCACTAACAGTCG+CGG 0.651678 1.3:+37220238 None:intergenic
AGCCTCCTGAAGAAATTAAG+CGG 0.651985 1.3:+37218496 None:intergenic
GTGAAATTCAATTGGCTGTG+AGG 0.654400 1.3:-37219314 MS.gene84943:CDS
GCACCGATGGAAGCTTATGA+CGG 0.656076 1.3:+37218518 None:intergenic
GGAACTATAAAGGAACTACT+CGG 0.658774 1.3:-37220565 MS.gene84943:CDS
ATTGAGTGGACTAATTGCTG+CGG 0.661101 1.3:-37219037 MS.gene84943:CDS
CTACTCAGATAGTTTCAATG+AGG 0.663957 1.3:-37219176 MS.gene84943:CDS
TCATTGATAGCTTTATGCCG+AGG 0.666881 1.3:-37219557 MS.gene84943:CDS
TATCAATCCATTGTGGAACG+AGG 0.672925 1.3:-37220039 MS.gene84943:CDS
GGCGCCAAAGGACTATCTGG+GGG 0.676642 1.3:+37220377 None:intergenic
CGAACAAAGAAGAAGTATTG+GGG 0.685152 1.3:-37219947 MS.gene84943:CDS
TCTTCCACACTCAAAATCAG+CGG 0.687134 1.3:+37219981 None:intergenic
TCTTCTCATACTCCACATGT+GGG 0.689277 1.3:+37219092 None:intergenic
AGCTGGTAGGATACAGACTG+TGG 0.703110 1.3:-37218716 MS.gene84943:CDS
ACAAAGAAGAAGTATTGGGG+AGG 0.704686 1.3:-37219944 MS.gene84943:CDS
CATGGTCCTGACAAAGCTGG+AGG 0.704809 1.3:-37219456 MS.gene84943:CDS
GTATATTGCTCATTCCACCT+CGG 0.716433 1.3:+37219540 None:intergenic
TCAACTACCTCCTTTCTCAG+CGG 0.739237 1.3:+37219135 None:intergenic
CACAGTAACCTCCAACACCG+AGG 0.741552 1.3:+37220475 None:intergenic
ACAAACCAGTGAATACTAGG+TGG 0.765072 1.3:-37219881 MS.gene84943:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACATATCATTGTAGAA+GGG - chr1.3:37219390-37219409 MS.gene84943:CDS 20.0%
!! AAGAAATTAAATTTGCAAGT+AGG - chr1.3:37219423-37219442 MS.gene84943:CDS 20.0%
!! TCATATCTTGTTCATAATAT+TGG - chr1.3:37220279-37220298 MS.gene84943:CDS 20.0%
! AAAACATATCATTGTAGAAG+GGG - chr1.3:37219391-37219410 MS.gene84943:CDS 25.0%
! AATGAAAAATAAAGATGGGA+GGG - chr1.3:37219598-37219617 MS.gene84943:CDS 25.0%
! ATGCCAATGAAAAATAAAGA+TGG - chr1.3:37219593-37219612 MS.gene84943:CDS 25.0%
! GAAAAACATATCATTGTAGA+AGG - chr1.3:37219389-37219408 MS.gene84943:CDS 25.0%
! TGCCAATGAAAAATAAAGAT+GGG - chr1.3:37219594-37219613 MS.gene84943:CDS 25.0%
! TTTATTTATCTCCTAAGCTT+TGG - chr1.3:37219048-37219067 MS.gene84943:CDS 25.0%
!! TTTGATAATTGTCATTTGCA+TGG - chr1.3:37219764-37219783 MS.gene84943:CDS 25.0%
ATGAAAAATAAAGATGGGAG+GGG - chr1.3:37219599-37219618 MS.gene84943:CDS 30.0%
ATGTCTCAAAACGTAAATTC+CGG + chr1.3:37220692-37220711 None:intergenic 30.0%
CAATGAAAAATAAAGATGGG+AGG - chr1.3:37219597-37219616 MS.gene84943:CDS 30.0%
CTTATTGTGTAGCGAAATAT+GGG - chr1.3:37219633-37219652 MS.gene84943:CDS 30.0%
GAAAATGGGTGAAATTCAAT+TGG - chr1.3:37219916-37219935 MS.gene84943:CDS 30.0%
GCTAATTTCTTCAGAATCAT+GGG - chr1.3:37220175-37220194 MS.gene84943:CDS 30.0%
TATAGATTGGAGGATAGAAA+GGG - chr1.3:37218891-37218910 MS.gene84943:CDS 30.0%
TCTTTCAACAGAAAATCTTC+AGG + chr1.3:37218486-37218505 None:intergenic 30.0%
TGAATCAGAACTGTTGTAAT+TGG + chr1.3:37220262-37220281 None:intergenic 30.0%
! AAAAGATTCAAGGATTGGTA+AGG - chr1.3:37219808-37219827 MS.gene84943:CDS 30.0%
! AGTTTTTGTGAAGGCTATTT+TGG - chr1.3:37219136-37219155 MS.gene84943:CDS 30.0%
!! GTTTTTGTGAAGGCTATTTT+GGG - chr1.3:37219137-37219156 MS.gene84943:CDS 30.0%
!! TTTTTGTGAAGGCTATTTTG+GGG - chr1.3:37219138-37219157 MS.gene84943:CDS 30.0%
!!! CTCCCATCTTTATTTTTCAT+TGG + chr1.3:37219599-37219618 None:intergenic 30.0%
AACTGATAAGGGTAGATATC+CGG - chr1.3:37219112-37219131 MS.gene84943:CDS 35.0%
AAGAGGTAAAGGAAAACTGT+TGG + chr1.3:37220328-37220347 None:intergenic 35.0%
AGAAAGGGTGATAAGGTTAA+GGG - chr1.3:37218906-37218925 MS.gene84943:CDS 35.0%
AGAAGAAAACCAATCCTGAA+TGG - chr1.3:37218703-37218722 MS.gene84943:CDS 35.0%
ATAGCCTTCACAAAAACTTC+CGG + chr1.3:37219134-37219153 None:intergenic 35.0%
ATTTGAATGAGGTTCCGAAA+CGG - chr1.3:37218835-37218854 MS.gene84943:CDS 35.0%
CCCAATACTTCTTCTTTGTT+CGG + chr1.3:37219293-37219312 None:intergenic 35.0%
CTACTCAGATAGTTTCAATG+AGG - chr1.3:37220062-37220081 MS.gene84943:CDS 35.0%
GAAAGATAAGGATGTTGTGA+AGG - chr1.3:37218785-37218804 MS.gene84943:CDS 35.0%
GCTTATTGTGTAGCGAAATA+TGG - chr1.3:37219632-37219651 MS.gene84943:CDS 35.0%
GGAACTATAAAGGAACTACT+CGG - chr1.3:37218673-37218692 MS.gene84943:CDS 35.0%
GGCTAATTTCTTCAGAATCA+TGG - chr1.3:37220174-37220193 MS.gene84943:CDS 35.0%
GTATAGATTGGAGGATAGAA+AGG - chr1.3:37218890-37218909 MS.gene84943:CDS 35.0%
GTGGAATGAGCAATATACTT+GGG - chr1.3:37219703-37219722 MS.gene84943:CDS 35.0%
GTTGAGTATATGCTTGATGT+TGG - chr1.3:37220121-37220140 MS.gene84943:CDS 35.0%
TAGAAAGGGTGATAAGGTTA+AGG - chr1.3:37218905-37218924 MS.gene84943:CDS 35.0%
TATAGTGCCAAATTCCAATC+AGG + chr1.3:37220351-37220370 None:intergenic 35.0%
TGAAAAATAAAGATGGGAGG+GGG - chr1.3:37219600-37219619 MS.gene84943:CDS 35.0%
TGCAATTCCTTTGCAGTTTA+TGG - chr1.3:37219319-37219338 MS.gene84943:CDS 35.0%
TTAAACCACCTAGTATTCAC+TGG + chr1.3:37219365-37219384 None:intergenic 35.0%
TTCAACAGAAAATCTTCAGG+CGG + chr1.3:37218483-37218502 None:intergenic 35.0%
TTCCTTTGCAGTTTATGGAT+AGG - chr1.3:37219324-37219343 MS.gene84943:CDS 35.0%
TTGGAATTTGGCACTATAGA+TGG - chr1.3:37220353-37220372 MS.gene84943:CDS 35.0%
TTTGAGGGTTAATGTGATTG+AGG - chr1.3:37219073-37219092 MS.gene84943:CDS 35.0%
! ACTGTTGGTAAGATAAGTTC+AGG + chr1.3:37220313-37220332 None:intergenic 35.0%
! AGAAGGTGGTTATCATGTTT+TGG - chr1.3:37219466-37219485 MS.gene84943:CDS 35.0%
! ATATCCGGAAGTTTTTGTGA+AGG - chr1.3:37219127-37219146 MS.gene84943:CDS 35.0%
! ATTCAAGGATTGGTAAGGTA+AGG - chr1.3:37219813-37219832 MS.gene84943:CDS 35.0%
! CCTAATATTTGCAAGAGCAT+CGG + chr1.3:37219021-37219040 None:intergenic 35.0%
! GAATTGGTGTTCTTGAAGTT+GGG - chr1.3:37219549-37219568 MS.gene84943:CDS 35.0%
! TCCGAACAAAGAAGAAGTAT+TGG - chr1.3:37219289-37219308 MS.gene84943:CDS 35.0%
! TCCTAAGCTTTGGTATTTGA+GGG - chr1.3:37219058-37219077 MS.gene84943:CDS 35.0%
! TTTTTGCTTTCTCCAAGGAT+CGG - chr1.3:37218733-37218752 MS.gene84943:CDS 35.0%
!! CCGAACAAAGAAGAAGTATT+GGG - chr1.3:37219290-37219309 MS.gene84943:CDS 35.0%
!! CGAACAAAGAAGAAGTATTG+GGG - chr1.3:37219291-37219310 MS.gene84943:CDS 35.0%
!! TGTGTGGTTTGATTTGAATG+AGG - chr1.3:37218824-37218843 MS.gene84943:CDS 35.0%
!! TTAATGCTTGCTGTTTGGAT+GGG - chr1.3:37218933-37218952 MS.gene84943:CDS 35.0%
AAACGTAAATTCCGGTCAGA+AGG + chr1.3:37220684-37220703 None:intergenic 40.0%
AACCAATCCTGAATGGAATC+AGG - chr1.3:37218710-37218729 MS.gene84943:CDS 40.0%
AACCTGATTCCATTCAGGAT+TGG + chr1.3:37218715-37218734 None:intergenic 40.0%
AACGTAAATTCCGGTCAGAA+GGG + chr1.3:37220683-37220702 None:intergenic 40.0%
AACTCTTCATCAAGTTCGTC+CGG + chr1.3:37220436-37220455 None:intergenic 40.0%
ACAAACCAGTGAATACTAGG+TGG - chr1.3:37219357-37219376 MS.gene84943:CDS 40.0%
ACCACAAACCAGTGAATACT+AGG - chr1.3:37219354-37219373 MS.gene84943:CDS 40.0%
ACCCTCAAATACCAAAGCTT+AGG + chr1.3:37219062-37219081 None:intergenic 40.0%
ACCTCTTCCTGATTGGAATT+TGG - chr1.3:37220341-37220360 MS.gene84943:CDS 40.0%
ACTTAGCTACTCAAGGAGAA+AGG - chr1.3:37220551-37220570 MS.gene84943:CDS 40.0%
AGACTTACAGCCAACTGATA+AGG - chr1.3:37219100-37219119 MS.gene84943:CDS 40.0%
AGATGCAATACCTTTACGTG+AGG - chr1.3:37218577-37218596 MS.gene84943:CDS 40.0%
AGCCTCCTGAAGAAATTAAG+CGG + chr1.3:37220745-37220764 None:intergenic 40.0%
ATCAAATCCTCGTTCCACAA+TGG + chr1.3:37219209-37219228 None:intergenic 40.0%
CCAAGTGGTGTGAAGAAAAT+GGG - chr1.3:37219902-37219921 MS.gene84943:CDS 40.0%
CCAATTGTAATCACAGTGCA+AGG + chr1.3:37219740-37219759 None:intergenic 40.0%
CCGATGCTCTTGCAAATATT+AGG - chr1.3:37219018-37219037 MS.gene84943:CDS 40.0%
CCTTGCACTGTGATTACAAT+TGG - chr1.3:37219737-37219756 MS.gene84943:CDS 40.0%
CTCCTATCCATAAACTGCAA+AGG + chr1.3:37219329-37219348 None:intergenic 40.0%
GAATGAGCAATATACTTGGG+AGG - chr1.3:37219706-37219725 MS.gene84943:CDS 40.0%
GAATTTGGCACTATAGATGG+AGG - chr1.3:37220356-37220375 MS.gene84943:CDS 40.0%
GACTTACAGCCAACTGATAA+GGG - chr1.3:37219101-37219120 MS.gene84943:CDS 40.0%
GATGCAATACCTTTACGTGA+GGG - chr1.3:37218578-37218597 MS.gene84943:CDS 40.0%
GCAAAAACCTGATTCCATTC+AGG + chr1.3:37218720-37218739 None:intergenic 40.0%
GGAGGTTACTGTGAAAGATA+AGG - chr1.3:37218773-37218792 MS.gene84943:CDS 40.0%
GGATATCTACCCTTATCAGT+TGG + chr1.3:37219113-37219132 None:intergenic 40.0%
GGGTGTATATAGTGCATCTT+TGG + chr1.3:37220004-37220023 None:intergenic 40.0%
GGTGCAAAAGATTCAAGGAT+TGG - chr1.3:37219803-37219822 MS.gene84943:CDS 40.0%
GGTGGAATGAGCAATATACT+TGG - chr1.3:37219702-37219721 MS.gene84943:CDS 40.0%
GGTTCGATCAAATTTGCAAC+TGG - chr1.3:37220230-37220249 MS.gene84943:CDS 40.0%
GTATATTGCTCATTCCACCT+CGG + chr1.3:37219701-37219720 None:intergenic 40.0%
GTGAAATTCAATTGGCTGTG+AGG - chr1.3:37219924-37219943 MS.gene84943:CDS 40.0%
GTTAAGCTCGGGAACTATAA+AGG - chr1.3:37218663-37218682 MS.gene84943:CDS 40.0%
TATCAATCCATTGTGGAACG+AGG - chr1.3:37219199-37219218 MS.gene84943:CDS 40.0%
TCCTCCAATCTATACCATTG+CGG + chr1.3:37218885-37218904 None:intergenic 40.0%
TCTTCCACACTCAAAATCAG+CGG + chr1.3:37219260-37219279 None:intergenic 40.0%
TCTTCTCATACTCCACATGT+GGG + chr1.3:37220149-37220168 None:intergenic 40.0%
TGCAAGTAGGATTCACATGA+GGG - chr1.3:37219436-37219455 MS.gene84943:CDS 40.0%
TTCCAATCAGGAAGAGGTAA+AGG + chr1.3:37220339-37220358 None:intergenic 40.0%
TTCCTTTACCTCTTCCTGAT+TGG - chr1.3:37220334-37220353 MS.gene84943:CDS 40.0%
TTCTTCTCATACTCCACATG+TGG + chr1.3:37220150-37220169 None:intergenic 40.0%
TTGCAAGTAGGATTCACATG+AGG - chr1.3:37219435-37219454 MS.gene84943:CDS 40.0%
TTGCCTTCAAAGGATGTTAC+CGG - chr1.3:37218618-37218637 MS.gene84943:CDS 40.0%
TTTGAATGAGGTTCCGAAAC+GGG - chr1.3:37218836-37218855 MS.gene84943:CDS 40.0%
! ATGAAGCATTTCCAGAAGCT+TGG - chr1.3:37218967-37218986 MS.gene84943:CDS 40.0%
! CCATTTTCTTCACACCACTT+GGG + chr1.3:37219904-37219923 None:intergenic 40.0%
! CTCCTAAGCTTTGGTATTTG+AGG - chr1.3:37219057-37219076 MS.gene84943:CDS 40.0%
! GGAATTGGTGTTCTTGAAGT+TGG - chr1.3:37219548-37219567 MS.gene84943:CDS 40.0%
! TCAGGTTTTTGCTTTCTCCA+AGG - chr1.3:37218728-37218747 MS.gene84943:CDS 40.0%
!! ACAAAGAAGAAGTATTGGGG+AGG - chr1.3:37219294-37219313 MS.gene84943:CDS 40.0%
!! ACCTAGTATTCACTGGTTTG+TGG + chr1.3:37219358-37219377 None:intergenic 40.0%
!! AGAATCATGGGAGTATTGAG+TGG - chr1.3:37220187-37220206 MS.gene84943:CDS 40.0%
!! ATTGAGTGGACTAATTGCTG+CGG - chr1.3:37220201-37220220 MS.gene84943:CDS 40.0%
!! GAGAGTTAATGCTTGCTGTT+TGG - chr1.3:37218928-37218947 MS.gene84943:CDS 40.0%
!! GTTAATGCTTGCTGTTTGGA+TGG - chr1.3:37218932-37218951 MS.gene84943:CDS 40.0%
!! TCATTGATAGCTTTATGCCG+AGG - chr1.3:37219681-37219700 MS.gene84943:CDS 40.0%
!!! TTTACGTTTTGAGACATCCG+AGG - chr1.3:37220695-37220714 MS.gene84943:CDS 40.0%
AAAATCAGCGGCTCCTCAAA+TGG + chr1.3:37219248-37219267 None:intergenic 45.0%
AAAGAGACCAAACCCCATCT+TGG - chr1.3:37218501-37218520 MS.gene84943:CDS 45.0%
AACAGAAAATCTTCAGGCGG+TGG + chr1.3:37218480-37218499 None:intergenic 45.0%
AGCATGCAATCAGTTCTTGC+AGG + chr1.3:37220769-37220788 None:intergenic 45.0%
AGTTGGGATATTGAGTGCTC+AGG - chr1.3:37219565-37219584 MS.gene84943:CDS 45.0%
ATGAGGGTTTGTCTAGAAGG+TGG - chr1.3:37219452-37219471 MS.gene84943:CDS 45.0%
ATTTCCAGAAGCTTGGCACT+CGG - chr1.3:37218974-37218993 MS.gene84943:CDS 45.0%
CACATGAGGGTTTGTCTAGA+AGG - chr1.3:37219449-37219468 MS.gene84943:CDS 45.0%
CCCAAGTGGTGTGAAGAAAA+TGG - chr1.3:37219901-37219920 MS.gene84943:CDS 45.0%
CCTTAACAACCCTCACGTAA+AGG + chr1.3:37218590-37218609 None:intergenic 45.0%
CCTTTACGTGAGGGTTGTTA+AGG - chr1.3:37218587-37218606 MS.gene84943:CDS 45.0%
CTCAACAAGGTCATATGTGC+TGG + chr1.3:37218556-37218575 None:intergenic 45.0%
CTCATCCGAACAATGTCAGA+AGG + chr1.3:37220481-37220500 None:intergenic 45.0%
CTTCCGGTAACATCCTTTGA+AGG + chr1.3:37218624-37218643 None:intergenic 45.0%
GACTAATTGCTGCGGGAAAA+TGG - chr1.3:37220209-37220228 MS.gene84943:CDS 45.0%
GCCAAATTCCAATCAGGAAG+AGG + chr1.3:37220345-37220364 None:intergenic 45.0%
GGACTAGAATCTCTCTTAGC+AGG - chr1.3:37219174-37219193 MS.gene84943:CDS 45.0%
GGAGGATAGAAAGGGTGATA+AGG - chr1.3:37218899-37218918 MS.gene84943:CDS 45.0%
GGATTTGATGTTCGTTGCTG+CGG - chr1.3:37219220-37219239 MS.gene84943:CDS 45.0%
GGTATTGCATCTGCTCAACA+AGG + chr1.3:37218569-37218588 None:intergenic 45.0%
GTGAAGAACTAGGAGTGGAT+AGG + chr1.3:37219882-37219901 None:intergenic 45.0%
GTGGAGTATGAGAAGAAGCA+AGG - chr1.3:37220153-37220172 MS.gene84943:CDS 45.0%
GTTCCGTCATAAGCTTCCAT+CGG - chr1.3:37220717-37220736 MS.gene84943:CDS 45.0%
GTTGGGATATTGAGTGCTCA+GGG - chr1.3:37219566-37219585 MS.gene84943:CDS 45.0%
GTTGTGAAGGACGACTTCAT+TGG - chr1.3:37218798-37218817 MS.gene84943:CDS 45.0%
TAGCGAAATATGGGCAGAAG+TGG - chr1.3:37219642-37219661 MS.gene84943:CDS 45.0%
TAGTGCATCTTTGGCAACAG+AGG + chr1.3:37219995-37220014 None:intergenic 45.0%
TCAACTACCTCCTTTCTCAG+CGG + chr1.3:37220106-37220125 None:intergenic 45.0%
TCCAGATTTCCAGAGCTGTT+TGG + chr1.3:37219531-37219550 None:intergenic 45.0%
TGTGACTCCATTCCAAGTTG+TGG - chr1.3:37220657-37220676 MS.gene84943:CDS 45.0%
! AAGAAATTAAGCGGCACCGA+TGG + chr1.3:37220736-37220755 None:intergenic 45.0%
! ACAAACAGTGCTGTTGCTCT+TGG + chr1.3:37220604-37220623 None:intergenic 45.0%
! AGATTTTTCCCCCTCCAAGA+TGG + chr1.3:37218518-37218537 None:intergenic 45.0%
! ATTTTTCCCCCTCCAAGATG+GGG + chr1.3:37218516-37218535 None:intergenic 45.0%
! CCCATTTTCTTCACACCACT+TGG + chr1.3:37219905-37219924 None:intergenic 45.0%
! CTGGAGGTGCAAAAGATTCA+AGG - chr1.3:37219798-37219817 MS.gene84943:CDS 45.0%
! GACTTAGAAGCATAGCTGGT+AGG - chr1.3:37220509-37220528 MS.gene84943:CDS 45.0%
! GATCGACTTAGAAGCATAGC+TGG - chr1.3:37220505-37220524 MS.gene84943:CDS 45.0%
! GATTTTTCCCCCTCCAAGAT+GGG + chr1.3:37218517-37218536 None:intergenic 45.0%
! TGCCGCTTAATTTCTTCAGG+AGG - chr1.3:37220740-37220759 MS.gene84943:CDS 45.0%
!! CAGCTCTGGAAATCTGGAAT+TGG - chr1.3:37219533-37219552 MS.gene84943:CDS 45.0%
!! GAAGGCTATTTTGGGGAATC+AGG - chr1.3:37219145-37219164 MS.gene84943:CDS 45.0%
!! GCAGGAGTATCAATCCATTG+TGG - chr1.3:37219192-37219211 MS.gene84943:CDS 45.0%
!! TTGAGTGGACTAATTGCTGC+GGG - chr1.3:37220202-37220221 MS.gene84943:CDS 45.0%
!! TTGATAGCTTTATGCCGAGG+TGG - chr1.3:37219684-37219703 MS.gene84943:CDS 45.0%
!! TTGATGTTGGTTCCCACATG+TGG - chr1.3:37220134-37220153 MS.gene84943:CDS 45.0%
!! TTTTGGGGAATCAGGCATTG+AGG - chr1.3:37219153-37219172 MS.gene84943:CDS 45.0%
ACCCTCCTAACATGGACACT+CGG - chr1.3:37220386-37220405 MS.gene84943:CDS 50.0%
ACGACTTCATTGGTCGTGTG+TGG - chr1.3:37218808-37218827 MS.gene84943:CDS 50.0%
AGAAGGGCCACAACTTGGAA+TGG + chr1.3:37220667-37220686 None:intergenic 50.0%
AGACCAAACCCCATCTTGGA+GGG - chr1.3:37218505-37218524 MS.gene84943:CDS 50.0%
AGCGTACGGATCACAACTTC+CGG + chr1.3:37218640-37218659 None:intergenic 50.0%
AGCTGGTAGGATACAGACTG+TGG - chr1.3:37220522-37220541 MS.gene84943:CDS 50.0%
ATGTCAGAAGGCCGTGAAGT+CGG + chr1.3:37220469-37220488 None:intergenic 50.0%
CAAACTGTCGAGCTGGCTAA+CGG + chr1.3:37220032-37220051 None:intergenic 50.0%
CACCACTTGGGTGAAGAACT+AGG + chr1.3:37219892-37219911 None:intergenic 50.0%
CACGGCCTTCTGACATTGTT+CGG - chr1.3:37220473-37220492 MS.gene84943:CDS 50.0%
CCGAGCTTAACTTCAGCGTA+CGG + chr1.3:37218654-37218673 None:intergenic 50.0%
CCGTACGCTGAAGTTAAGCT+CGG - chr1.3:37218651-37218670 MS.gene84943:CDS 50.0%
CGTACGCTGAAGTTAAGCTC+GGG - chr1.3:37218652-37218671 MS.gene84943:CDS 50.0%
CGTGAGGGTTGTTAAGGCTA+AGG - chr1.3:37218593-37218612 MS.gene84943:CDS 50.0%
CTTGGAGGGGGAAAAATCTC+TGG - chr1.3:37218519-37218538 MS.gene84943:CDS 50.0%
CTTGGGTGAAGAACTAGGAG+TGG + chr1.3:37219887-37219906 None:intergenic 50.0%
GCCGCAATGGTATAGATTGG+AGG - chr1.3:37218881-37218900 MS.gene84943:CDS 50.0%
GGCTAAGGACTTGCCTTCAA+AGG - chr1.3:37218608-37218627 MS.gene84943:CDS 50.0%
GGTAGGATACAGACTGTGGT+TGG - chr1.3:37220526-37220545 MS.gene84943:CDS 50.0%
GTTGGCGACTTAGCTACTCA+AGG - chr1.3:37220544-37220563 MS.gene84943:CDS 50.0%
TCGACACATTCCCGACTTCA+CGG - chr1.3:37220455-37220474 MS.gene84943:CDS 50.0%
TTAGCCAGCTCGACAGTTTG+AGG - chr1.3:37220032-37220051 MS.gene84943:CDS 50.0%
TTGCATGGTCCTGACAAAGC+TGG - chr1.3:37219779-37219798 MS.gene84943:CDS 50.0%
! ATCGGTTCCACTAACAGTCG+CGG + chr1.3:37219003-37219022 None:intergenic 50.0%
! CTCCTAGTTCTTCACCCAAG+TGG - chr1.3:37219887-37219906 MS.gene84943:CDS 50.0%
! GCACCGATGGAAGCTTATGA+CGG + chr1.3:37220723-37220742 None:intergenic 50.0%
! GGAAGCTTATGACGGAACCT+CGG + chr1.3:37220715-37220734 None:intergenic 50.0%
! GGCAGAAGTGGATTCGAACA+AGG - chr1.3:37219654-37219673 MS.gene84943:CDS 50.0%
! TGCTGTTTGGATGGGTACAC+AGG - chr1.3:37218941-37218960 MS.gene84943:CDS 50.0%
! TTTCTCCAAGGATCGGCTTC+AGG - chr1.3:37218740-37218759 MS.gene84943:CDS 50.0%
! TTTGCACCTCCAGCTTTGTC+AGG + chr1.3:37219791-37219810 None:intergenic 50.0%
!! CGGTGCCGCTTAATTTCTTC+AGG - chr1.3:37220737-37220756 MS.gene84943:CDS 50.0%
!! GCCAAACAGCTCTGGAAATC+TGG - chr1.3:37219527-37219546 MS.gene84943:CDS 50.0%
!! TCACGCTGATTCAGCTCATC+CGG - chr1.3:37220414-37220433 MS.gene84943:CDS 50.0%
!! TCCATGTTAGGAGGGTGTCT+TGG + chr1.3:37220382-37220401 None:intergenic 50.0%
ACCAAACCCCATCTTGGAGG+GGG - chr1.3:37218507-37218526 MS.gene84943:CDS 55.0%
ACTACCTCCTTTCTCAGCGG+TGG + chr1.3:37220103-37220122 None:intergenic 55.0%
AGCCGAGTGTCCATGTTAGG+AGG + chr1.3:37220391-37220410 None:intergenic 55.0%
ATAGTCCTTTGGCGCCGCAA+TGG - chr1.3:37218868-37218887 MS.gene84943:CDS 55.0%
CAAGTTGTGGCCCTTCTGAC+CGG - chr1.3:37220670-37220689 MS.gene84943:CDS 55.0%
CACAGTAACCTCCAACACCG+AGG + chr1.3:37218766-37218785 None:intergenic 55.0%
CAGCAGTGATCTTCGCCCAA+CGG - chr1.3:37219505-37219524 MS.gene84943:CDS 55.0%
CATGGTCCTGACAAAGCTGG+AGG - chr1.3:37219782-37219801 MS.gene84943:CDS 55.0%
CGTTGCTGCGGAACCATTTG+AGG - chr1.3:37219232-37219251 MS.gene84943:CDS 55.0%
CTATACCATTGCGGCGCCAA+AGG + chr1.3:37218876-37218895 None:intergenic 55.0%
CTATCTGGGGGAACCCGTTT+CGG + chr1.3:37218852-37218871 None:intergenic 55.0%
GACCAAACCCCATCTTGGAG+GGG - chr1.3:37218506-37218525 MS.gene84943:CDS 55.0%
GAGACCAAACCCCATCTTGG+AGG - chr1.3:37218504-37218523 MS.gene84943:CDS 55.0%
GAGAGCCGAGTGTCCATGTT+AGG + chr1.3:37220394-37220413 None:intergenic 55.0%
GATGCCTCAAACTGTCGAGC+TGG + chr1.3:37220039-37220058 None:intergenic 55.0%
GCCAAGACACCCTCCTAACA+TGG - chr1.3:37220378-37220397 MS.gene84943:CDS 55.0%
GCCGAGTGTCCATGTTAGGA+GGG + chr1.3:37220390-37220409 None:intergenic 55.0%
GGCGCCGCAATGGTATAGAT+TGG - chr1.3:37218878-37218897 MS.gene84943:CDS 55.0%
GGTTCCCCCAGATAGTCCTT+TGG - chr1.3:37218857-37218876 MS.gene84943:CDS 55.0%
TCCAGAGCTGTTTGGCCGTT+GGG + chr1.3:37219523-37219542 None:intergenic 55.0%
TCGAGCTGGCTAACGGTCAA+CGG + chr1.3:37220025-37220044 None:intergenic 55.0%
TGTCAGAAGGCCGTGAAGTC+GGG + chr1.3:37220468-37220487 None:intergenic 55.0%
TTCCAGAGCTGTTTGGCCGT+TGG + chr1.3:37219524-37219543 None:intergenic 55.0%
!!! GGAGCCGCTGATTTTGAGTG+TGG - chr1.3:37219253-37219272 MS.gene84943:CDS 55.0%
CGAGCTGGCTAACGGTCAAC+GGG + chr1.3:37220024-37220043 None:intergenic 60.0%
CGGCGCCAAAGGACTATCTG+GGG + chr1.3:37218865-37218884 None:intergenic 60.0%
CGGTCAGAAGGGCCACAACT+TGG + chr1.3:37220672-37220691 None:intergenic 60.0%
GCATCCGAGTGCCAAGCTTC+TGG + chr1.3:37218981-37219000 None:intergenic 60.0%
GCGGCGCCAAAGGACTATCT+GGG + chr1.3:37218866-37218885 None:intergenic 60.0%
GGCGCCAAAGGACTATCTGG+GGG + chr1.3:37218864-37218883 None:intergenic 60.0%
GGCTGCAGTCTTTGCTGAGC+TGG - chr1.3:37220572-37220591 MS.gene84943:CDS 60.0%
TCCCCCTCCAAGATGGGGTT+TGG + chr1.3:37218511-37218530 None:intergenic 60.0%
TCGGATGCCGCGACTGTTAG+TGG - chr1.3:37218993-37219012 MS.gene84943:CDS 60.0%
TGAGCCACCGCTGAGAAAGG+AGG - chr1.3:37220096-37220115 MS.gene84943:CDS 60.0%
TGCGGCGCCAAAGGACTATC+TGG + chr1.3:37218867-37218886 None:intergenic 60.0%
! CAAGGATCGGCTTCAGGCCT+CGG - chr1.3:37218746-37218765 MS.gene84943:CDS 60.0%
CGAGGCCTGAAGCCGATCCT+TGG + chr1.3:37218748-37218767 None:intergenic 65.0%
CGCTGAGCCACCGCTGAGAA+AGG - chr1.3:37220093-37220112 MS.gene84943:CDS 65.0%
GCCCAACGGCCAAACAGCTC+TGG - chr1.3:37219519-37219538 MS.gene84943:CDS 65.0%
! TCGGCTTCAGGCCTCGGTGT+TGG - chr1.3:37218752-37218771 MS.gene84943:CDS 65.0%
!! GCTTCAGGCCTCGGTGTTGG+AGG - chr1.3:37218755-37218774 MS.gene84943:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 37218468 37220792 37218468 ID=MS.gene84943
chr1.3 mRNA 37218468 37220792 37218468 ID=MS.gene84943.t1;Parent=MS.gene84943
chr1.3 exon 37218468 37220792 37218468 ID=MS.gene84943.t1.exon1;Parent=MS.gene84943.t1
chr1.3 CDS 37218468 37220792 37218468 ID=cds.MS.gene84943.t1;Parent=MS.gene84943.t1
Gene Sequence

>MS.gene84943

ATGCAGAGGCCACCGCCTGAAGATTTTCTGTTGAAAGAGACCAAACCCCATCTTGGAGGGGGAAAAATCTCTGGTGACAAACTAACCAGCACATATGACCTTGTTGAGCAGATGCAATACCTTTACGTGAGGGTTGTTAAGGCTAAGGACTTGCCTTCAAAGGATGTTACCGGAAGTTGTGATCCGTACGCTGAAGTTAAGCTCGGGAACTATAAAGGAACTACTCGGCATTTTGAGAAGAAAACCAATCCTGAATGGAATCAGGTTTTTGCTTTCTCCAAGGATCGGCTTCAGGCCTCGGTGTTGGAGGTTACTGTGAAAGATAAGGATGTTGTGAAGGACGACTTCATTGGTCGTGTGTGGTTTGATTTGAATGAGGTTCCGAAACGGGTTCCCCCAGATAGTCCTTTGGCGCCGCAATGGTATAGATTGGAGGATAGAAAGGGTGATAAGGTTAAGGGAGAGTTAATGCTTGCTGTTTGGATGGGTACACAGGCTGATGAAGCATTTCCAGAAGCTTGGCACTCGGATGCCGCGACTGTTAGTGGAACCGATGCTCTTGCAAATATTAGGTCGAAAGTTTATTTATCTCCTAAGCTTTGGTATTTGAGGGTTAATGTGATTGAGGCACAAGACTTACAGCCAACTGATAAGGGTAGATATCCGGAAGTTTTTGTGAAGGCTATTTTGGGGAATCAGGCATTGAGGACTAGAATCTCTCTTAGCAGGAGTATCAATCCATTGTGGAACGAGGATTTGATGTTCGTTGCTGCGGAACCATTTGAGGAGCCGCTGATTTTGAGTGTGGAAGACAGAGTTGCTCCGAACAAAGAAGAAGTATTGGGGAGGTGTGCAATTCCTTTGCAGTTTATGGATAGGAGACTCGACCACAAACCAGTGAATACTAGGTGGTTTAATCTTGAAAAACATATCATTGTAGAAGGGGAAAAGAAGAAAGAAATTAAATTTGCAAGTAGGATTCACATGAGGGTTTGTCTAGAAGGTGGTTATCATGTTTTGGATGAATCAACTCACTACAGCAGTGATCTTCGCCCAACGGCCAAACAGCTCTGGAAATCTGGAATTGGTGTTCTTGAAGTTGGGATATTGAGTGCTCAGGGTTTGATGCCAATGAAAAATAAAGATGGGAGGGGGACAACTGATGCTTATTGTGTAGCGAAATATGGGCAGAAGTGGATTCGAACAAGGACAATCATTGATAGCTTTATGCCGAGGTGGAATGAGCAATATACTTGGGAGGTTTTTGATCCTTGCACTGTGATTACAATTGGTGTATTTGATAATTGTCATTTGCATGGTCCTGACAAAGCTGGAGGTGCAAAAGATTCAAGGATTGGTAAGGTAAGGATTCGACTTTCGACACTCGAGACTGATCGAGTGTACACACATTCCTATCCACTCCTAGTTCTTCACCCAAGTGGTGTGAAGAAAATGGGTGAAATTCAATTGGCTGTGAGGTTCACTTGTTCTTCTTTGCTCAACATGATGCACATGTATTCACTACCTCTGTTGCCAAAGATGCACTATATACACCCGTTGACCGTTAGCCAGCTCGACAGTTTGAGGCATCAAGCTACTCAGATAGTTTCAATGAGGCTGAGTCGCGCTGAGCCACCGCTGAGAAAGGAGGTAGTTGAGTATATGCTTGATGTTGGTTCCCACATGTGGAGTATGAGAAGAAGCAAGGCTAATTTCTTCAGAATCATGGGAGTATTGAGTGGACTAATTGCTGCGGGAAAATGGTTCGATCAAATTTGCAACTGGAAAAATCCAATTACAACAGTTCTGATTCATATCTTGTTCATAATATTGGTCATGTATCCTGAACTTATCTTACCAACAGTTTTCCTTTACCTCTTCCTGATTGGAATTTGGCACTATAGATGGAGGCCAAGACACCCTCCTAACATGGACACTCGGCTCTCTCACGCTGATTCAGCTCATCCGGACGAACTTGATGAAGAGTTCGACACATTCCCGACTTCACGGCCTTCTGACATTGTTCGGATGAGATATGATCGACTTAGAAGCATAGCTGGTAGGATACAGACTGTGGTTGGCGACTTAGCTACTCAAGGAGAAAGGCTGCAGTCTTTGCTGAGCTGGCGTGATCCAAGAGCAACAGCACTGTTTGTGATTTTCTGTTTGCTTGCTGCTACTATACTGTATGTGACTCCATTCCAAGTTGTGGCCCTTCTGACCGGAATTTACGTTTTGAGACATCCGAGGTTCCGTCATAAGCTTCCATCGGTGCCGCTTAATTTCTTCAGGAGGCTGCCTGCAAGAACTGATTGCATGCTTTGA
Protein sequence

>MS.gene84943.t1

MQRPPPEDFLLKETKPHLGGGKISGDKLTSTYDLVEQMQYLYVRVVKAKDLPSKDVTGSCDPYAEVKLGNYKGTTRHFEKKTNPEWNQVFAFSKDRLQASVLEVTVKDKDVVKDDFIGRVWFDLNEVPKRVPPDSPLAPQWYRLEDRKGDKVKGELMLAVWMGTQADEAFPEAWHSDAATVSGTDALANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRYPEVFVKAILGNQALRTRISLSRSINPLWNEDLMFVAAEPFEEPLILSVEDRVAPNKEEVLGRCAIPLQFMDRRLDHKPVNTRWFNLEKHIIVEGEKKKEIKFASRIHMRVCLEGGYHVLDESTHYSSDLRPTAKQLWKSGIGVLEVGILSAQGLMPMKNKDGRGTTDAYCVAKYGQKWIRTRTIIDSFMPRWNEQYTWEVFDPCTVITIGVFDNCHLHGPDKAGGAKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVKKMGEIQLAVRFTCSSLLNMMHMYSLPLLPKMHYIHPLTVSQLDSLRHQATQIVSMRLSRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAAGKWFDQICNWKNPITTVLIHILFIILVMYPELILPTVFLYLFLIGIWHYRWRPRHPPNMDTRLSHADSAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLLAATILYVTPFQVVALLTGIYVLRHPRFRHKLPSVPLNFFRRLPARTDCML