AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84977

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84977.t1 MTR_2g041270 62.338 462 172 2 257 717 165 625 0.0 625
MS.gene84977.t1 MTR_2g041270 36.774 155 86 3 1 147 1 151 8.95e-23 104
MS.gene84977.t1 MTR_3g047950 50.716 489 210 5 242 717 113 583 9.73e-166 506
MS.gene84977.t1 MTR_3g047950 31.677 161 98 4 1 153 1 157 9.76e-13 72.8
MS.gene84977.t1 MTR_4g109580 34.728 478 289 8 248 716 151 614 1.16e-82 280
MS.gene84977.t1 MTR_4g109580 36.320 413 241 7 248 651 151 550 2.77e-75 258
MS.gene84977.t1 MTR_5g026880 73.944 142 23 2 1 142 1 128 3.10e-60 201
MS.gene84977.t1 MTR_4g109590 24.427 262 155 7 444 694 18 247 1.47e-17 84.3
MS.gene84977.t1 MTR_2g048560 21.834 458 318 17 271 710 3 438 4.95e-14 76.6
MS.gene84977.t1 MTR_4g070090 22.043 372 262 13 285 647 42 394 1.17e-13 75.1
MS.gene84977.t1 MTR_5g027390 22.454 383 265 15 339 704 59 426 2.92e-13 73.9
MS.gene84977.t1 MTR_5g048670 40.496 121 57 3 4 123 232 338 3.68e-13 72.8
MS.gene84977.t1 MTR_5g048670 33.333 144 81 3 1 141 3 134 8.50e-13 71.6
MS.gene84977.t1 MTR_5g078250 21.260 381 279 11 276 650 8 373 5.81e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84977.t1 AT5G45400 51.617 866 342 24 1 811 1 844 0.0 825
MS.gene84977.t1 AT4G19130 50.903 831 333 11 1 812 2 776 0.0 795
MS.gene84977.t1 AT4G19130 50.903 831 333 11 1 812 1 775 0.0 795
MS.gene84977.t1 AT2G06510 47.133 715 299 10 1 713 1 638 0.0 653
MS.gene84977.t1 AT2G06510 47.529 688 286 9 28 713 1 615 0.0 642
MS.gene84977.t1 AT5G08020 35.408 466 281 8 260 715 144 599 1.23e-88 295
MS.gene84977.t1 AT5G61000 34.341 463 286 7 260 713 168 621 1.83e-80 274
MS.gene84977.t1 AT1G52950 20.862 441 297 17 276 689 10 425 3.44e-13 73.9

Find 239 sgRNAs with CRISPR-Local

Find 418 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTGGGAAATTTCCAATTT+TGG 0.119994 5.2:+17855417 MS.gene84977:CDS
AGCTTGCCCGTATCTCTTTC+TGG 0.219790 5.2:-17857758 None:intergenic
CTTCCAACTGGTAGAGATTA+TGG 0.230120 5.2:+17856228 MS.gene84977:CDS
TCTTCCTGTAGGCGCTCTAT+TGG 0.253282 5.2:-17854792 None:intergenic
CTTCCTGTAGGCGCTCTATT+GGG 0.253925 5.2:-17854791 None:intergenic
TACTGACTCACTTGATTTGC+TGG 0.254019 5.2:-17856255 None:intergenic
CATTGCCACCAGCCAATTAT+TGG 0.268493 5.2:+17855489 MS.gene84977:CDS
AGTTGATTTGGATGTTATAA+TGG 0.273134 5.2:+17854313 MS.gene84977:CDS
CTGACTCCGGGCTCAGGTTT+AGG 0.274242 5.2:-17854623 None:intergenic
AATTATCATCATAGTTGATT+TGG 0.277504 5.2:+17854301 MS.gene84977:CDS
TTGGAACATTCCTCCCTTCC+TGG 0.278845 5.2:-17855558 None:intergenic
CAATCAGCTGCTGGTCAATT+AGG 0.281184 5.2:+17854419 MS.gene84977:CDS
TAGTTGATGCTTGTGATTAT+AGG 0.281987 5.2:+17855833 MS.gene84977:CDS
AATCAGGTTCTACCAATAAT+TGG 0.283594 5.2:-17855501 None:intergenic
GATTTCAATGGGAAGTCTAT+TGG 0.292216 5.2:+17855463 MS.gene84977:CDS
GGTGGATCGGGTGGTGCTTC+AGG 0.308065 5.2:+17856438 MS.gene84977:CDS
GGTGGATCGGGTGGTGCTTC+AGG 0.308065 5.2:+17856537 MS.gene84977:CDS
AGTTTCCGCAATCCACAATA+TGG 0.311513 5.2:+17854695 MS.gene84977:CDS
AAGAACGAGTTGGTTCATTC+TGG 0.317308 5.2:+17852843 MS.gene84977:CDS
TCCAGAGAATCATCTAGTTT+TGG 0.320620 5.2:+17855592 MS.gene84977:CDS
TGAGGTGCTGCACTCATATT+AGG 0.320635 5.2:-17856606 None:intergenic
AAATGTAGCTCTGCCATCTA+TGG 0.324422 5.2:+17854508 MS.gene84977:CDS
ATTGTCCACATATTCTGATA+TGG 0.329169 5.2:-17854857 None:intergenic
GATTGTGAAGGTGCTTCTTT+TGG 0.329678 5.2:-17854371 None:intergenic
TGAAGTCGGTAAAGTCTATC+TGG 0.344159 5.2:+17855033 MS.gene84977:CDS
GTAAAGTCTATCTGGTTTCC+AGG 0.351168 5.2:+17855041 MS.gene84977:CDS
CTGCAAAATATTTGCGACTC+TGG 0.359343 5.2:+17855400 MS.gene84977:CDS
AGTGCAGCCAACAGGGTATC+TGG 0.363217 5.2:+17856516 MS.gene84977:CDS
ATTTCAATGGGAAGTCTATT+GGG 0.365569 5.2:+17855464 MS.gene84977:CDS
GTAAAAGCCTCTGGAAAATC+AGG 0.366700 5.2:-17855517 None:intergenic
TTCTCCCTTAGCTGTTACTC+TGG 0.367358 5.2:-17854885 None:intergenic
AACTCTGCTATCAACACAAC+TGG 0.376895 5.2:+17856195 MS.gene84977:CDS
GCAAATCAAGTGAGTCAGTA+TGG 0.378549 5.2:+17856258 MS.gene84977:CDS
GGAGATGGCTGTTGGTTCAT+AGG 0.381919 5.2:-17854761 None:intergenic
TTTGCTTCATCAGGTGCTCC+TGG 0.382615 5.2:+17856300 MS.gene84977:CDS
ATGGGAAATGGCGCTGTGAC+AGG 0.387651 5.2:+17855800 MS.gene84977:CDS
AGATAGACAATGTAACAAAA+AGG 0.387752 5.2:+17855762 MS.gene84977:CDS
GCCTACTTCAACACGGTGTC+TGG 0.388870 5.2:+17856417 MS.gene84977:CDS
AGTGTTTATTCTAACAGTTC+TGG 0.391584 5.2:+17854560 MS.gene84977:CDS
AGCTGGCTTCAGACTTCCCC+TGG 0.391797 5.2:-17855059 None:intergenic
GGCCAGACATGTCTTTCAAC+TGG 0.394180 5.2:-17855324 None:intergenic
ACCTGAACAGTCTGCTGGGG+GGG 0.395896 5.2:+17856395 MS.gene84977:CDS
ATCTGACTCTAAATCTCTTC+TGG 0.395988 5.2:+17856125 MS.gene84977:CDS
TCTCATGGAAACAGTAATAC+AGG 0.398118 5.2:+17856630 MS.gene84977:CDS
CTGTTGGCTGCACTCATACT+AGG 0.400416 5.2:-17856507 None:intergenic
TTGAACAGTGGTTCCCATAC+AGG 0.401201 5.2:+17854467 MS.gene84977:CDS
CAAATTAAAGATGAAAACTT+AGG 0.402489 5.2:+17855643 MS.gene84977:CDS
AATGCCAACAACCTGGTCAT+TGG 0.404212 5.2:+17856472 MS.gene84977:CDS
CTAGTATGAGTGCAGCCAAC+AGG 0.404300 5.2:+17856508 MS.gene84977:CDS
TAACATTAACACCACCTGTA+TGG 0.410958 5.2:-17854481 None:intergenic
CTATAGCAATGCCCGAGGTC+AGG 0.412988 5.2:+17854916 MS.gene84977:CDS
GTGGTACCTTCTGCTTTCTC+AGG 0.422322 5.2:-17856168 None:intergenic
GCACATATAGATATCCAATC+AGG 0.427836 5.2:-17855679 None:intergenic
GCCAGAGTAAATGATTTCAA+TGG 0.428857 5.2:+17855451 MS.gene84977:CDS
TGTCTATCTCCTATCATGAT+AGG 0.429287 5.2:-17855748 None:intergenic
GGACTTCAGACAAGCCTGAT+TGG 0.429546 5.2:+17855665 MS.gene84977:CDS
CTGACCTCGGGCATTGCTAT+AGG 0.430306 5.2:-17854915 None:intergenic
TCGCCCAATGACCAGGTTGT+TGG 0.431088 5.2:-17856476 None:intergenic
ATGCAACCAGCCTGGACATT+GGG 0.431785 5.2:+17856572 MS.gene84977:CDS
ACCAAAACTAGATGATTCTC+TGG 0.433948 5.2:-17855593 None:intergenic
CAACACGGTGTCTGGTGGAT+CGG 0.436146 5.2:+17856425 MS.gene84977:CDS
AACAGACCAGCGTCAGTGAA+TGG 0.438524 5.2:+17854650 MS.gene84977:CDS
ATGCCAACAACCTGGTCATT+GGG 0.439187 5.2:+17856473 MS.gene84977:CDS
TGCAAAATATTTGCGACTCT+GGG 0.439523 5.2:+17855401 MS.gene84977:CDS
TTCAAACTGACTCCGGGCTC+AGG 0.442196 5.2:-17854629 None:intergenic
TTGATTCTATGAACCAGCTT+AGG 0.442252 5.2:-17857618 None:intergenic
ACAGCTTGTCCTATCATGAT+AGG 0.443787 5.2:+17855739 MS.gene84977:CDS
AATACAGGGCAAGGAAGATA+TGG 0.445354 5.2:+17856645 MS.gene84977:CDS
ATATGGATTCAAAGCAGATA+TGG 0.447181 5.2:-17854840 None:intergenic
AACACGGTGTCTGGTGGATC+GGG 0.447468 5.2:+17856426 MS.gene84977:CDS
TCGACAATGGGGATGGGAAA+TGG 0.450285 5.2:+17855788 MS.gene84977:CDS
ACTGACTCACTTGATTTGCT+GGG 0.450839 5.2:-17856254 None:intergenic
TGCTATAAATGCAACCAGCC+TGG 0.454319 5.2:+17856564 MS.gene84977:CDS
TCATACCTCCAATGCTGAAA+AGG 0.454672 5.2:-17857716 None:intergenic
CAATAATTGGCTGGTGGCAA+TGG 0.462805 5.2:-17855488 None:intergenic
CAATCTGCTGTGAGTCATGC+AGG 0.465004 5.2:+17854389 MS.gene84977:CDS
ACAGTCGGGCGATCCATAGA+TGG 0.465241 5.2:-17854521 None:intergenic
TTCCAACTGGTAGAGATTAT+GGG 0.465749 5.2:+17856229 MS.gene84977:CDS
GAGGTATGAGCTCCATGTTA+TGG 0.466473 5.2:+17857730 MS.gene84977:CDS
CCGGGCTCAGGTTTAGGATA+AGG 0.467204 5.2:-17854617 None:intergenic
ATGGACAAATGTGACTTGAT+TGG 0.468013 5.2:+17854332 MS.gene84977:CDS
CCCCTCAGTGTAAAAGCCTC+TGG 0.470072 5.2:-17855526 None:intergenic
GAAGTGTTGAATTAACTGTA+TGG 0.471291 5.2:+17855347 MS.gene84977:CDS
GGAGGGCGGCGAGGACATCA+TGG 0.471968 5.2:+17855915 MS.gene84977:CDS
AACAGGGTATCTGGTGGATC+GGG 0.472406 5.2:+17856525 MS.gene84977:CDS
TGTCACCAATGGGACGGAAA+TGG 0.474603 5.2:-17855189 None:intergenic
TGGTCTGTTCAAACTGACTC+CGG 0.475304 5.2:-17854636 None:intergenic
TGCTATCAACACAACTGGAC+CGG 0.476610 5.2:+17856200 MS.gene84977:CDS
GTTCAAGTTAAAAGTAAAAG+AGG 0.480048 5.2:+17856035 MS.gene84977:CDS
CCAGAGTAAATGATTTCAAT+GGG 0.480347 5.2:+17855452 MS.gene84977:CDS
ATTTAAAGAAATCATCAGTA+AGG 0.480638 5.2:+17855993 MS.gene84977:CDS
CATTGGCTTGCCCAATGTCC+AGG 0.480988 5.2:-17856582 None:intergenic
GCTATCAACACAACTGGACC+GGG 0.486431 5.2:+17856201 MS.gene84977:CDS
ATAGATGGCAGAGCTACATT+TGG 0.492079 5.2:-17854506 None:intergenic
TAAAGCCAGAGTAACAGCTA+AGG 0.494515 5.2:+17854880 MS.gene84977:CDS
CCCATTGAAATCATTTACTC+TGG 0.495273 5.2:-17855452 None:intergenic
GCAGATATGGGAATTATCCT+TGG 0.497877 5.2:-17854827 None:intergenic
AACATTAACACCACCTGTAT+GGG 0.498510 5.2:-17854480 None:intergenic
CTCCAGTTGAAAGACATGTC+TGG 0.498906 5.2:+17855322 MS.gene84977:CDS
ATCCACCTGAACAGTCTGCT+GGG 0.501379 5.2:+17856391 MS.gene84977:CDS
GGTCAATTAGGAAGCAATGC+TGG 0.501871 5.2:+17854431 MS.gene84977:CDS
TTCCTGTAGGCGCTCTATTG+GGG 0.505036 5.2:-17854790 None:intergenic
ACAGACCAGCGTCAGTGAAT+GGG 0.506395 5.2:+17854651 MS.gene84977:CDS
TCAGGTTTAGGATAAGGTGG+AGG 0.506527 5.2:-17854611 None:intergenic
CAGTCCTTCGCCCAATGACC+AGG 0.506994 5.2:-17856483 None:intergenic
CAGTCATGATCTTCCTAAGC+TGG 0.507161 5.2:+17857605 MS.gene84977:CDS
ATTCCTACCAAGGAGAAATA+CGG 0.508478 5.2:+17854966 MS.gene84977:CDS
AAGTGTTGAATTAACTGTAT+GGG 0.508629 5.2:+17855348 MS.gene84977:CDS
AAGCAAAAGAACTGCTATGT+TGG 0.509267 5.2:-17856284 None:intergenic
TAGCTGTAGGATTCACAGTC+GGG 0.512335 5.2:-17854535 None:intergenic
AATCCACCTGAACAGTCTGC+TGG 0.512712 5.2:+17856390 MS.gene84977:CDS
ATTTACCATTTCCGTCCCAT+TGG 0.514076 5.2:+17855184 MS.gene84977:CDS
AAATTAAAGATGAAAACTTA+GGG 0.514330 5.2:+17855644 MS.gene84977:CDS
TACCGAGTCGTTCTCTCCGA+TGG 0.515942 5.2:+17852786 MS.gene84977:CDS
CAACAGGGTATCTGGTGGAT+CGG 0.516824 5.2:+17856524 MS.gene84977:CDS
CAGGTGGATTTCTAAGATGT+AGG 0.517112 5.2:-17856377 None:intergenic
GGCTGTTGGTTCATAGGCTG+AGG 0.522191 5.2:-17854755 None:intergenic
AAGGTTATCGACAATGGGGA+TGG 0.523176 5.2:+17855781 MS.gene84977:CDS
TTTCTTATGATTGATGCTGT+AGG 0.524916 5.2:-17855271 None:intergenic
AATGCAACCAGCCTGGACAT+TGG 0.525732 5.2:+17856571 MS.gene84977:CDS
TGAATCCATATCAGAATATG+TGG 0.525989 5.2:+17854852 MS.gene84977:CDS
TATGGATTCAAAGCAGATAT+GGG 0.529125 5.2:-17854839 None:intergenic
GGCTTGCCCAATGTCCAGGC+TGG 0.533673 5.2:-17856578 None:intergenic
GGTCTGTTCAAACTGACTCC+GGG 0.534272 5.2:-17854635 None:intergenic
CGCACCCTGAGTTAGATTCA+CGG 0.535489 5.2:-17852652 None:intergenic
TTTCTGGATGCTCCATAACA+TGG 0.535815 5.2:-17857742 None:intergenic
CGATCACAACATGTACACTT+TGG 0.536226 5.2:+17857689 MS.gene84977:CDS
TACTTCAACACGGTGTCTGG+TGG 0.536288 5.2:+17856420 MS.gene84977:CDS
TATATGTCATGCAGCAATTG+TGG 0.536707 5.2:+17856327 MS.gene84977:CDS
GGACCGGGGAGCCTTCCAAC+TGG 0.537085 5.2:+17856216 MS.gene84977:CDS
CTACCAGTTGGAAGGCTCCC+CGG 0.538892 5.2:-17856219 None:intergenic
TTACTGTTTCCATGAGATTG+AGG 0.540190 5.2:-17856624 None:intergenic
AGGGTATCTGGTGGATCGGG+TGG 0.540283 5.2:+17856528 MS.gene84977:CDS
CATTCTGGAAGGTTGCAGAA+AGG 0.541521 5.2:+17852858 MS.gene84977:CDS
TACCCCAATAGAGCGCCTAC+AGG 0.542085 5.2:+17854788 MS.gene84977:CDS
GTTTCCGCAATCCACAATAT+GGG 0.543354 5.2:+17854696 MS.gene84977:CDS
GGTCTTGAAGTCCCATATTG+TGG 0.543559 5.2:-17854707 None:intergenic
GTTGATAGCAGAGTTAATAG+TGG 0.544022 5.2:-17856187 None:intergenic
TAAAGGTGATGGAGAACTGA+AGG 0.544370 5.2:+17857575 MS.gene84977:intron
TATAGCAATGCCCGAGGTCA+GGG 0.549414 5.2:+17854917 MS.gene84977:CDS
AACTGTAGTGAAAGCAGAGA+AGG 0.549497 5.2:+17856089 MS.gene84977:CDS
CTGCACTCATATTAGGACAT+TGG 0.549675 5.2:-17856599 None:intergenic
AGTGCAGCACCTCAATCTCA+TGG 0.551068 5.2:+17856615 MS.gene84977:CDS
GGAGCATCCAGAAAGAGATA+CGG 0.551484 5.2:+17857751 MS.gene84977:CDS
TGCTATAAATGCCAACAACC+TGG 0.554286 5.2:+17856465 MS.gene84977:CDS
TTCCTACCAAGGAGAAATAC+GGG 0.554513 5.2:+17854967 MS.gene84977:CDS
AGGGGATGGTTTGACCAGGA+AGG 0.554514 5.2:+17855544 MS.gene84977:CDS
AAGATCACACTGGCATGACA+TGG 0.555067 5.2:+17855878 MS.gene84977:CDS
AGGTTCTACCAATAATTGGC+TGG 0.555216 5.2:-17855497 None:intergenic
TAAAGTCTATCTGGTTTCCA+GGG 0.556543 5.2:+17855042 MS.gene84977:CDS
GTCCCATAATCTCTACCAGT+TGG 0.558425 5.2:-17856231 None:intergenic
TATGGCCGTGAATCTAACTC+AGG 0.559607 5.2:+17852647 None:intergenic
TATGCAAAACAACAGTATTG+TGG 0.560142 5.2:+17855219 MS.gene84977:CDS
ACGAGTTGGTTCATTCTGGA+AGG 0.560850 5.2:+17852847 MS.gene84977:CDS
CTAGCTGTAGGATTCACAGT+CGG 0.562876 5.2:-17854536 None:intergenic
AAAGCCAGAGTAACAGCTAA+GGG 0.564905 5.2:+17854881 MS.gene84977:CDS
CGGAAATGGTAAATCTGTTG+TGG 0.566850 5.2:-17855175 None:intergenic
GGGGATGGTTTGACCAGGAA+GGG 0.571102 5.2:+17855545 MS.gene84977:CDS
CTTGATTGGAAAACCTGACC+CGG 0.571574 5.2:+17854346 MS.gene84977:CDS
GAGGGCGGCGAGGACATCAT+GGG 0.573351 5.2:+17855916 MS.gene84977:CDS
GGAAACAGTAATACAGGGCA+AGG 0.573609 5.2:+17856636 MS.gene84977:CDS
GATATGGGAATTATCCTTGG+AGG 0.575694 5.2:-17854824 None:intergenic
TGTTGGTTCATAGGCTGAGG+AGG 0.576019 5.2:-17854752 None:intergenic
CTATTGGGGTACAAAGGAGA+TGG 0.577113 5.2:-17854776 None:intergenic
GAGCATCCAGAAAGAGATAC+GGG 0.577271 5.2:+17857752 MS.gene84977:CDS
AGTGTTGAATTAACTGTATG+GGG 0.577662 5.2:+17855349 MS.gene84977:CDS
TAACAGCTAAGGGAGAACTT+AGG 0.578549 5.2:+17854891 MS.gene84977:CDS
TGTTGTGATCGCGCCATGTG+TGG 0.578876 5.2:-17857677 None:intergenic
GGAAATGTACAATCAGCTGC+TGG 0.579256 5.2:+17854410 MS.gene84977:CDS
GGTACAAAGGAGATGGCTGT+TGG 0.579446 5.2:-17854769 None:intergenic
TTCTATAATGAAATTGAAGT+CGG 0.579692 5.2:+17855019 MS.gene84977:CDS
AAATCGATAACTTGTAACAC+CGG 0.580881 5.2:-17852723 None:intergenic
CTGCATGACATATATGAACC+AGG 0.580991 5.2:-17856318 None:intergenic
CATAATCTCTACCAGTTGGA+AGG 0.585428 5.2:-17856227 None:intergenic
ACGGTGTCTGGTGGATCGGG+TGG 0.586283 5.2:+17856429 MS.gene84977:CDS
GGTTCATAGAATCAAAGCTA+TGG 0.587109 5.2:+17857626 MS.gene84977:CDS
TTTCAATGTCACCAATGGGA+CGG 0.588825 5.2:-17855195 None:intergenic
CCACCTGAACAGTCTGCTGG+GGG 0.589289 5.2:+17856393 MS.gene84977:CDS
GAATAAACACTGCTAGCTGT+AGG 0.590144 5.2:-17854548 None:intergenic
CTGACTCACTTGATTTGCTG+GGG 0.592519 5.2:-17856253 None:intergenic
AAGTTGCCCGTATTTCTCCT+TGG 0.593742 5.2:-17854973 None:intergenic
CCTTATCCTAAACCTGAGCC+CGG 0.593971 5.2:+17854617 MS.gene84977:CDS
AGTTCTGGATCTGCAAGATA+CGG 0.596623 5.2:+17854575 MS.gene84977:CDS
GGCTCAGGTTTAGGATAAGG+TGG 0.597704 5.2:-17854614 None:intergenic
GATGGTTTGACCAGGAAGGG+AGG 0.599066 5.2:+17855548 MS.gene84977:CDS
AAGTTATCATCCTCAACGCA+TGG 0.600819 5.2:-17855148 None:intergenic
CAGCTTAGGAAGATCATGAC+TGG 0.602385 5.2:-17857604 None:intergenic
AGGTTATCGACAATGGGGAT+GGG 0.604110 5.2:+17855782 MS.gene84977:CDS
AAGTCCCATATTGTGGATTG+CGG 0.605059 5.2:-17854700 None:intergenic
GGCAACTTGCTTTAATACCG+TGG 0.605402 5.2:+17854988 MS.gene84977:CDS
TGCCCGTATTTCTCCTTGGT+AGG 0.606184 5.2:-17854969 None:intergenic
TCCACCTGAACAGTCTGCTG+GGG 0.606964 5.2:+17856392 MS.gene84977:CDS
GAACTGAGAAAGCTTAACAA+TGG 0.607205 5.2:-17852883 None:intergenic
GGAGCATCATTTCTTCCTGT+AGG 0.608224 5.2:-17854803 None:intergenic
TCTCTGGAAATAGATTGACT+TGG 0.608424 5.2:-17855577 None:intergenic
CTCATGGAAACAGTAATACA+GGG 0.609403 5.2:+17856631 MS.gene84977:CDS
ACCAGACACCGTGTTGAAGT+AGG 0.615126 5.2:-17856418 None:intergenic
AAAGGTGATGGAGAACTGAA+GGG 0.616814 5.2:+17857576 MS.gene84977:intron
AGTTATACAGCCATGCGTTG+AGG 0.618440 5.2:+17855138 MS.gene84977:CDS
GGCGCTCTATTGGGGTACAA+AGG 0.618965 5.2:-17854782 None:intergenic
ATTATAGAACTGTTCAGCCA+CGG 0.621977 5.2:-17855005 None:intergenic
GAAGAAATGATGCTCCTCCA+AGG 0.624446 5.2:+17854810 MS.gene84977:CDS
AACAGTGGTTCCCATACAGG+TGG 0.624885 5.2:+17854470 MS.gene84977:CDS
CTTCAGCCTGAGAAAGCAGA+AGG 0.625498 5.2:+17856162 MS.gene84977:CDS
TTATCTCTTGATCATTACGT+AGG 0.629281 5.2:-17855099 None:intergenic
CGCTACACAGAAGAACGAGT+TGG 0.629408 5.2:+17852833 MS.gene84977:CDS
CAGGTTTAGGATAAGGTGGA+GGG 0.631269 5.2:-17854610 None:intergenic
TTGTTGATAATACAAACCAT+CGG 0.634104 5.2:-17852802 None:intergenic
GTTGGTTCATAGGCTGAGGA+GGG 0.635707 5.2:-17854751 None:intergenic
CGATCCACCAGATACCCTGT+TGG 0.638031 5.2:-17856523 None:intergenic
TTCTACCAATAATTGGCTGG+TGG 0.640568 5.2:-17855494 None:intergenic
CACATCGGAAGAATTGCACC+CGG 0.640884 5.2:+17852704 MS.gene84977:CDS
ACAACCTGGTCATTGGGCGA+AGG 0.644886 5.2:+17856479 MS.gene84977:CDS
ATACAGTTAATTCAACACTT+CGG 0.648500 5.2:-17855345 None:intergenic
AACTCACAGTATTTGAACAG+TGG 0.649462 5.2:+17854455 MS.gene84977:CDS
TAGTATGAGTGCAGCCAACA+GGG 0.649627 5.2:+17856509 MS.gene84977:CDS
CACCTGAACAGTCTGCTGGG+GGG 0.650603 5.2:+17856394 MS.gene84977:CDS
GCAGCCAACAGGGTATCTGG+TGG 0.651792 5.2:+17856519 MS.gene84977:CDS
ACTGAGGGGATGGTTTGACC+AGG 0.654074 5.2:+17855540 MS.gene84977:CDS
AGATCACACTGGCATGACAT+GGG 0.654652 5.2:+17855879 MS.gene84977:CDS
ATGTCATGCAGCAATTGTGG+AGG 0.663695 5.2:+17856330 MS.gene84977:CDS
AAGGTGATGGAGAACTGAAG+GGG 0.667039 5.2:+17857577 MS.gene84977:intron
ATGGCCGTGAATCTAACTCA+GGG 0.668154 5.2:+17852648 MS.gene84977:CDS
GATGGTTTGTATTATCAACA+AGG 0.668307 5.2:+17852804 MS.gene84977:CDS
TAAGACCCATTCACTGACGC+TGG 0.671160 5.2:-17854656 None:intergenic
AATCGATAACTTGTAACACC+GGG 0.673289 5.2:-17852722 None:intergenic
ACGTGAAGTTCATCCACACA+TGG 0.684197 5.2:+17857664 MS.gene84977:CDS
AAAGTCTATCTGGTTTCCAG+GGG 0.686944 5.2:+17855043 MS.gene84977:CDS
CTATCAACACAACTGGACCG+GGG 0.692708 5.2:+17856202 MS.gene84977:CDS
TTTCACATCGGAAAACACAT+CGG 0.693774 5.2:+17852689 MS.gene84977:CDS
TATTGTGGATGTGATTGCCG+TGG 0.695988 5.2:+17855234 MS.gene84977:CDS
AGTAACGATGTGTTTCACAT+CGG 0.703769 5.2:+17852677 MS.gene84977:CDS
AGGTTTAGGATAAGGTGGAG+GGG 0.708451 5.2:-17854609 None:intergenic
GTGTTGAATTAACTGTATGG+GGG 0.715516 5.2:+17855350 MS.gene84977:CDS
TGACTCACAGCAGATTGTGA+AGG 0.717395 5.2:-17854383 None:intergenic
ATGCAGATACAAGATCACAC+TGG 0.727660 5.2:+17855868 MS.gene84977:CDS
AGGACCTATAGCAATGCCCG+AGG 0.735559 5.2:+17854911 MS.gene84977:CDS
AACCATCGGAGAGAACGACT+CGG 0.745203 5.2:-17852788 None:intergenic
AGGACTGATAGAAGTAACCA+CGG 0.746168 5.2:-17855251 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAATTCTTTATAGT+TGG - chr5.2:17853121-17853140 None:intergenic 10.0%
!! AAACAAACATATTAAATTTA+AGG + chr5.2:17853155-17853174 MS.gene84977:intron 10.0%
!! ACCTAAAAAAATATAATTTA+TGG - chr5.2:17853200-17853219 None:intergenic 10.0%
!!! AAAATTGAACAATTTTTTTA+AGG - chr5.2:17853228-17853247 None:intergenic 10.0%
!!! AATCTTTCATATTTTTATTT+GGG - chr5.2:17857324-17857343 None:intergenic 10.0%
!!! ACCATAAATTATATTTTTTT+AGG + chr5.2:17853196-17853215 MS.gene84977:intron 10.0%
!!! ATAATTTTTATTGTTGAAAA+AGG + chr5.2:17853514-17853533 MS.gene84977:intron 10.0%
!!! CTTTTTAAATGTAAATAAAT+AGG + chr5.2:17853443-17853462 MS.gene84977:intron 10.0%
!!! TAAAAGAATTTTTTTTTTCT+GGG + chr5.2:17854152-17854171 MS.gene84977:intron 10.0%
!!! TTAAAAGAATTTTTTTTTTC+TGG + chr5.2:17854151-17854170 MS.gene84977:intron 10.0%
!! AAAAACAACAAAAACAAAAT+AGG - chr5.2:17857033-17857052 None:intergenic 15.0%
!! AAACATAACAAAAAAAAATC+CGG - chr5.2:17854043-17854062 None:intergenic 15.0%
!! AAATCAAAAAACCAAATTAT+TGG - chr5.2:17854273-17854292 None:intergenic 15.0%
!! AAATTAAAGATGAAAACTTA+GGG + chr5.2:17855644-17855663 MS.gene84977:CDS 15.0%
!! AACAATACTTCATATATTAT+TGG + chr5.2:17857112-17857131 MS.gene84977:intron 15.0%
!! AACCTAAAAAAATCTAATTT+CGG - chr5.2:17853017-17853036 None:intergenic 15.0%
!! ACAATACTTCATATATTATT+GGG + chr5.2:17857113-17857132 MS.gene84977:intron 15.0%
!! ATAAAGAAATCGAAAAAAAA+AGG - chr5.2:17852956-17852975 None:intergenic 15.0%
!! ATATTATTGGGAAAATAAAA+AGG + chr5.2:17857125-17857144 MS.gene84977:intron 15.0%
!! TAATCTCTAACAAAAAATTA+AGG + chr5.2:17853298-17853317 MS.gene84977:intron 15.0%
!! TATTATTGGGAAAATAAAAA+GGG + chr5.2:17857126-17857145 MS.gene84977:intron 15.0%
!!! ACATAAAACAATTTTGAATT+AGG + chr5.2:17857476-17857495 MS.gene84977:intron 15.0%
!!! ACATTTTTTTTTAACTTTCA+AGG + chr5.2:17857227-17857246 MS.gene84977:intron 15.0%
!!! CAATCTTTCATATTTTTATT+TGG - chr5.2:17857325-17857344 None:intergenic 15.0%
!!! CATAAAACAATTTTGAATTA+GGG + chr5.2:17857477-17857496 MS.gene84977:intron 15.0%
!!! TAAAAGAAGAAATTTTTCTA+GGG + chr5.2:17853779-17853798 MS.gene84977:intron 15.0%
!!! TATTTTGTTTTTGTTGTTTT+TGG + chr5.2:17857032-17857051 MS.gene84977:intron 15.0%
!!! TTAAAAGAAGAAATTTTTCT+AGG + chr5.2:17853778-17853797 MS.gene84977:intron 15.0%
!!! TTATTATTTTTACAAAGACA+TGG + chr5.2:17853983-17854002 MS.gene84977:intron 15.0%
!!! TTTTTGATTTTTACATGTAT+TGG + chr5.2:17852982-17853001 MS.gene84977:intron 15.0%
!! AATTATCATCATAGTTGATT+TGG + chr5.2:17854301-17854320 MS.gene84977:CDS 20.0%
!! ATATAGATGACATAATTATG+TGG + chr5.2:17856811-17856830 MS.gene84977:intron 20.0%
!! ATTTAAAGAAATCATCAGTA+AGG + chr5.2:17855993-17856012 MS.gene84977:CDS 20.0%
!! CAAATTAAAGATGAAAACTT+AGG + chr5.2:17855643-17855662 MS.gene84977:CDS 20.0%
!! TAGCTCAATGTTTATTATTT+GGG + chr5.2:17853662-17853681 MS.gene84977:intron 20.0%
!! TTCTATAATGAAATTGAAGT+CGG + chr5.2:17855019-17855038 MS.gene84977:CDS 20.0%
!!! AAATTTTCAATTTTTGAAGC+CGG + chr5.2:17853749-17853768 MS.gene84977:intron 20.0%
!!! AGTATTTTCTTTTGATCTTT+TGG + chr5.2:17854943-17854962 MS.gene84977:CDS 20.0%
!!! ATCCGAAATTAGATTTTTTT+AGG + chr5.2:17853012-17853031 MS.gene84977:intron 20.0%
!!! ATTTTTACATGTATTGGAAA+TGG + chr5.2:17852988-17853007 MS.gene84977:intron 20.0%
!!! TTTCTTCTTTTAATCAAATC+CGG - chr5.2:17853771-17853790 None:intergenic 20.0%
!!! TTTGCAATTAAACTTGTTTA+GGG + chr5.2:17853639-17853658 MS.gene84977:intron 20.0%
! AGATAGACAATGTAACAAAA+AGG + chr5.2:17855762-17855781 MS.gene84977:CDS 25.0%
! AGCTCAATGTTTATTATTTG+GGG + chr5.2:17853663-17853682 MS.gene84977:intron 25.0%
! AGGCAATTATTGATGAAATT+GGG - chr5.2:17853400-17853419 None:intergenic 25.0%
! ATACAGTTAATTCAACACTT+CGG - chr5.2:17855348-17855367 None:intergenic 25.0%
! GCATCAATCATAAGAAAAAA+TGG + chr5.2:17855277-17855296 MS.gene84977:CDS 25.0%
! GTAGCTCAATGTTTATTATT+TGG + chr5.2:17853661-17853680 MS.gene84977:intron 25.0%
! TAAACAATTAAGCTACAACA+AGG - chr5.2:17854239-17854258 None:intergenic 25.0%
! TAAATGCTTTACTAACCAAT+AGG + chr5.2:17854200-17854219 MS.gene84977:intron 25.0%
! TAGGCAATTATTGATGAAAT+TGG - chr5.2:17853401-17853420 None:intergenic 25.0%
! TGTAAAGATACTTTAGTGAA+AGG + chr5.2:17857343-17857362 MS.gene84977:intron 25.0%
! TTCCATTCAAAATATTCCTT+GGG + chr5.2:17857419-17857438 MS.gene84977:intron 25.0%
! TTTATTTGGGAAATGTTAAC+CGG - chr5.2:17857311-17857330 None:intergenic 25.0%
!! ACAATTTTGAATTAGGGTTT+AGG + chr5.2:17857483-17857502 MS.gene84977:intron 25.0%
!! ATATTTTCAATGTCACCAAT+GGG - chr5.2:17855202-17855221 None:intergenic 25.0%
!! GTTCAAGTTAAAAGTAAAAG+AGG + chr5.2:17856035-17856054 MS.gene84977:CDS 25.0%
!! GTTTGCAATTAAACTTGTTT+AGG + chr5.2:17853638-17853657 MS.gene84977:intron 25.0%
!! TCCTTTTATAATTCCTTAAC+CGG + chr5.2:17857280-17857299 MS.gene84977:intron 25.0%
!! TGATTAAAATTCTTTTGAGC+TGG - chr5.2:17855079-17855098 None:intergenic 25.0%
!!! AAGTGTTGAATTAACTGTAT+GGG + chr5.2:17855348-17855367 MS.gene84977:CDS 25.0%
!!! AGTTGATTTGGATGTTATAA+TGG + chr5.2:17854313-17854332 MS.gene84977:CDS 25.0%
!!! TTGTATTGATTTGATACTTC+CGG - chr5.2:17853563-17853582 None:intergenic 25.0%
!!! TTGTTGATAATACAAACCAT+CGG - chr5.2:17852805-17852824 None:intergenic 25.0%
!!! TTGTTTTTGTTGTTTTTGGA+GGG + chr5.2:17857036-17857055 MS.gene84977:intron 25.0%
!!! TTTGTTTTTGTTGTTTTTGG+AGG + chr5.2:17857035-17857054 MS.gene84977:intron 25.0%
AAATCGCCATTTAAAAACGT+TGG + chr5.2:17853355-17853374 MS.gene84977:intron 30.0%
AACAAAAAGGTTATCGACAA+TGG + chr5.2:17855775-17855794 MS.gene84977:CDS 30.0%
AATCAGGTTCTACCAATAAT+TGG - chr5.2:17855504-17855523 None:intergenic 30.0%
AATCGCCATTTAAAAACGTT+GGG + chr5.2:17853356-17853375 MS.gene84977:intron 30.0%
ACAAAAAGGTTATCGACAAT+GGG + chr5.2:17855776-17855795 MS.gene84977:CDS 30.0%
AGTGTTTATTCTAACAGTTC+TGG + chr5.2:17854560-17854579 MS.gene84977:CDS 30.0%
ATAATTATGTGGTTTCGATG+TGG + chr5.2:17856822-17856841 MS.gene84977:intron 30.0%
ATATGGATTCAAAGCAGATA+TGG - chr5.2:17854843-17854862 None:intergenic 30.0%
ATTGTCCACATATTCTGATA+TGG - chr5.2:17854860-17854879 None:intergenic 30.0%
ATTTCAATGGGAAGTCTATT+GGG + chr5.2:17855464-17855483 MS.gene84977:CDS 30.0%
CCAGAGTAAATGATTTCAAT+GGG + chr5.2:17855452-17855471 MS.gene84977:CDS 30.0%
CTGAAATTAATAGATGCATG+TGG - chr5.2:17856877-17856896 None:intergenic 30.0%
CTGAGATTAAAATCAATCAC+CGG + chr5.2:17854021-17854040 MS.gene84977:intron 30.0%
CTTCCATTCAAAATATTCCT+TGG + chr5.2:17857418-17857437 MS.gene84977:intron 30.0%
GATCAATTGTAACAGCTAAA+AGG - chr5.2:17856914-17856933 None:intergenic 30.0%
GTATGGAAGACATTGAAATT+TGG + chr5.2:17856686-17856705 MS.gene84977:intron 30.0%
TATGCAAAACAACAGTATTG+TGG + chr5.2:17855219-17855238 MS.gene84977:CDS 30.0%
TATGGATTCAAAGCAGATAT+GGG - chr5.2:17854842-17854861 None:intergenic 30.0%
TGAATCCATATCAGAATATG+TGG + chr5.2:17854852-17854871 MS.gene84977:CDS 30.0%
TTAGGTTAAGTATGTGTAGA+TGG + chr5.2:17853030-17853049 MS.gene84977:intron 30.0%
TTATCTCTTGATCATTACGT+AGG - chr5.2:17855102-17855121 None:intergenic 30.0%
TTCAGTGCAAATACCAAAAT+TGG + chr5.2:17856985-17857004 MS.gene84977:intron 30.0%
TTGAAAATTTCACTGCTACA+AGG - chr5.2:17853739-17853758 None:intergenic 30.0%
TTTCTTATGATTGATGCTGT+AGG - chr5.2:17855274-17855293 None:intergenic 30.0%
! AAATCGATAACTTGTAACAC+CGG - chr5.2:17852726-17852745 None:intergenic 30.0%
! AATCAAAGCTATGGCTTTTT+GGG + chr5.2:17857635-17857654 MS.gene84977:CDS 30.0%
! ACAGAATACAAATCTTTTGC+AGG - chr5.2:17855946-17855965 None:intergenic 30.0%
! AGCCATTCGATTTCTAAAAA+TGG - chr5.2:17857400-17857419 None:intergenic 30.0%
! AGTGTTGAATTAACTGTATG+GGG + chr5.2:17855349-17855368 MS.gene84977:CDS 30.0%
! CATATTTTCAATGTCACCAA+TGG - chr5.2:17855203-17855222 None:intergenic 30.0%
! CCTTTTATAATTCCTTAACC+GGG + chr5.2:17857281-17857300 MS.gene84977:intron 30.0%
! CGATGAATATTTAGAATGCT+AGG - chr5.2:17857369-17857388 None:intergenic 30.0%
! CTTTTATAATTCCTTAACCG+GGG + chr5.2:17857282-17857301 MS.gene84977:intron 30.0%
! GATGGTTTGTATTATCAACA+AGG + chr5.2:17852804-17852823 MS.gene84977:CDS 30.0%
! GCAGTTTTTACAACCAAAAT+TGG - chr5.2:17855433-17855452 None:intergenic 30.0%
! TAGTTGATGCTTGTGATTAT+AGG + chr5.2:17855833-17855852 MS.gene84977:CDS 30.0%
! TTTTATAATTCCTTAACCGG+GGG + chr5.2:17857283-17857302 MS.gene84977:intron 30.0%
! TTTTGCCCAACGTTTTTAAA+TGG - chr5.2:17853364-17853383 None:intergenic 30.0%
! TTTTTGTTAGGCACCAATTT+TGG - chr5.2:17857001-17857020 None:intergenic 30.0%
!! AACCCAAGGAATATTTTGAA+TGG - chr5.2:17857424-17857443 None:intergenic 30.0%
!! GAAGTGTTGAATTAACTGTA+TGG + chr5.2:17855347-17855366 MS.gene84977:CDS 30.0%
!!! TGCCATTTTTAGAAATCGAA+TGG + chr5.2:17857395-17857414 MS.gene84977:intron 30.0%
AAACCAAATTATTGGCACAG+AGG - chr5.2:17854265-17854284 None:intergenic 35.0%
AAATGAACTCCACATAAACC+CGG - chr5.2:17856730-17856749 None:intergenic 35.0%
AACATTAACACCACCTGTAT+GGG - chr5.2:17854483-17854502 None:intergenic 35.0%
AACTCACAGTATTTGAACAG+TGG + chr5.2:17854455-17854474 MS.gene84977:CDS 35.0%
AAGCAAAAGAACTGCTATGT+TGG - chr5.2:17856287-17856306 None:intergenic 35.0%
ACCAAAACTAGATGATTCTC+TGG - chr5.2:17855596-17855615 None:intergenic 35.0%
AGCTCGCAAAAAATTTATGC+AGG + chr5.2:17853093-17853112 MS.gene84977:intron 35.0%
AGTAACGATGTGTTTCACAT+CGG + chr5.2:17852677-17852696 MS.gene84977:CDS 35.0%
ATCTGACTCTAAATCTCTTC+TGG + chr5.2:17856125-17856144 MS.gene84977:CDS 35.0%
ATGCTTTACTAACCAATAGG+AGG + chr5.2:17854203-17854222 MS.gene84977:intron 35.0%
ATGGACAAATGTGACTTGAT+TGG + chr5.2:17854332-17854351 MS.gene84977:CDS 35.0%
ATGTGTAGATGGTGAATGAT+GGG + chr5.2:17853041-17853060 MS.gene84977:intron 35.0%
ATTATAGAACTGTTCAGCCA+CGG - chr5.2:17855008-17855027 None:intergenic 35.0%
ATTCCTACCAAGGAGAAATA+CGG + chr5.2:17854966-17854985 MS.gene84977:CDS 35.0%
ATTGCTCAAAATCAGCAGTA+TGG + chr5.2:17856669-17856688 MS.gene84977:intron 35.0%
CAAAAAGGTTATCGACAATG+GGG + chr5.2:17855777-17855796 MS.gene84977:CDS 35.0%
CCCATTGAAATCATTTACTC+TGG - chr5.2:17855455-17855474 None:intergenic 35.0%
CCCGGTTAAGGAATTATAAA+AGG - chr5.2:17857284-17857303 None:intergenic 35.0%
CTCATGGAAACAGTAATACA+GGG + chr5.2:17856631-17856650 MS.gene84977:CDS 35.0%
CTCGCAAAAAATTTATGCAG+GGG + chr5.2:17853095-17853114 MS.gene84977:intron 35.0%
GAACTGAGAAAGCTTAACAA+TGG - chr5.2:17852886-17852905 None:intergenic 35.0%
GACAATGTCTACCTGATTAA+AGG + chr5.2:17857558-17857577 MS.gene84977:intron 35.0%
GATTTCAATGGGAAGTCTAT+TGG + chr5.2:17855463-17855482 MS.gene84977:CDS 35.0%
GCACATATAGATATCCAATC+AGG - chr5.2:17855682-17855701 None:intergenic 35.0%
GCCAGAGTAAATGATTTCAA+TGG + chr5.2:17855451-17855470 MS.gene84977:CDS 35.0%
GCTCGCAAAAAATTTATGCA+GGG + chr5.2:17853094-17853113 MS.gene84977:intron 35.0%
GGTTCATAGAATCAAAGCTA+TGG + chr5.2:17857626-17857645 MS.gene84977:CDS 35.0%
GTGTTGAATTAACTGTATGG+GGG + chr5.2:17855350-17855369 MS.gene84977:CDS 35.0%
TAACATTAACACCACCTGTA+TGG - chr5.2:17854484-17854503 None:intergenic 35.0%
TATATGTCATGCAGCAATTG+TGG + chr5.2:17856327-17856346 MS.gene84977:CDS 35.0%
TATGTGTAGATGGTGAATGA+TGG + chr5.2:17853040-17853059 MS.gene84977:intron 35.0%
TCTCATGGAAACAGTAATAC+AGG + chr5.2:17856630-17856649 MS.gene84977:CDS 35.0%
TGCAAAATATTTGCGACTCT+GGG + chr5.2:17855401-17855420 MS.gene84977:CDS 35.0%
TGTCTATCTCCTATCATGAT+AGG - chr5.2:17855751-17855770 None:intergenic 35.0%
TGTGTGCATAAAGACCAAAT+AGG - chr5.2:17857063-17857082 None:intergenic 35.0%
TTACTGTTTCCATGAGATTG+AGG - chr5.2:17856627-17856646 None:intergenic 35.0%
TTCAGTGTTATCACATGCAA+AGG + chr5.2:17853848-17853867 MS.gene84977:intron 35.0%
TTCCAACTGGTAGAGATTAT+GGG + chr5.2:17856229-17856248 MS.gene84977:CDS 35.0%
TTGATTCTATGAACCAGCTT+AGG - chr5.2:17857621-17857640 None:intergenic 35.0%
TTTCACATCGGAAAACACAT+CGG + chr5.2:17852689-17852708 MS.gene84977:CDS 35.0%
! AAAATACTTTTCCCTGACCT+CGG - chr5.2:17854931-17854950 None:intergenic 35.0%
! AATCGATAACTTGTAACACC+GGG - chr5.2:17852725-17852744 None:intergenic 35.0%
! CGAACAAAAGAATTTTGCAC+TGG - chr5.2:17854731-17854750 None:intergenic 35.0%
! GAATCAAAGCTATGGCTTTT+TGG + chr5.2:17857634-17857653 MS.gene84977:CDS 35.0%
! GTTGATTTCATTCACCTACA+TGG + chr5.2:17853878-17853897 MS.gene84977:intron 35.0%
! TAAAGTCTATCTGGTTTCCA+GGG + chr5.2:17855042-17855061 MS.gene84977:CDS 35.0%
! TCTATTGTTGTTGTTGAGAC+CGG + chr5.2:17853541-17853560 MS.gene84977:intron 35.0%
! TCTCTGGAAATAGATTGACT+TGG - chr5.2:17855580-17855599 None:intergenic 35.0%
! TGTGGCATTTTGCAAAAGTT+CGG - chr5.2:17856859-17856878 None:intergenic 35.0%
! TTTATTATTTGGGGTAGCCA+AGG + chr5.2:17853672-17853691 MS.gene84977:intron 35.0%
!! ATGACTCTAGGAGGTTTTTA+TGG + chr5.2:17854087-17854106 MS.gene84977:intron 35.0%
!! CAAAACACTACTTTTGAACC+GGG + chr5.2:17856709-17856728 MS.gene84977:intron 35.0%
!! CTCTGGGAAATTTCCAATTT+TGG + chr5.2:17855417-17855436 MS.gene84977:CDS 35.0%
!! GCAAAACACTACTTTTGAAC+CGG + chr5.2:17856708-17856727 MS.gene84977:intron 35.0%
!! GTTGATAGCAGAGTTAATAG+TGG - chr5.2:17856190-17856209 None:intergenic 35.0%
!! GTTTTGGTAAAAGTGAAGTG+CGG + chr5.2:17855608-17855627 MS.gene84977:CDS 35.0%
!! TCCAGAGAATCATCTAGTTT+TGG + chr5.2:17855592-17855611 MS.gene84977:CDS 35.0%
!! TGACTCTAGGAGGTTTTTAT+GGG + chr5.2:17854088-17854107 MS.gene84977:intron 35.0%
!!! AGGTACCAGTGTTTTTTGTT+AGG - chr5.2:17857013-17857032 None:intergenic 35.0%
AAAGCCAGAGTAACAGCTAA+GGG + chr5.2:17854881-17854900 MS.gene84977:CDS 40.0%
AACACGCAATCATAAACCCA+AGG - chr5.2:17857438-17857457 None:intergenic 40.0%
AACTCTGCTATCAACACAAC+TGG + chr5.2:17856195-17856214 MS.gene84977:CDS 40.0%
AACTGTAGTGAAAGCAGAGA+AGG + chr5.2:17856089-17856108 MS.gene84977:CDS 40.0%
AAGTTATCATCCTCAACGCA+TGG - chr5.2:17855151-17855170 None:intergenic 40.0%
AATACAGGGCAAGGAAGATA+TGG + chr5.2:17856645-17856664 MS.gene84977:CDS 40.0%
ACAGCTTGTCCTATCATGAT+AGG + chr5.2:17855739-17855758 MS.gene84977:CDS 40.0%
ACATGTGAACTGATGACTCT+AGG + chr5.2:17854075-17854094 MS.gene84977:intron 40.0%
AGGACTGATAGAAGTAACCA+CGG - chr5.2:17855254-17855273 None:intergenic 40.0%
AGGTTCTACCAATAATTGGC+TGG - chr5.2:17855500-17855519 None:intergenic 40.0%
AGTGTTATCACATGCAAAGG+TGG + chr5.2:17853851-17853870 MS.gene84977:intron 40.0%
AGTTTCCGCAATCCACAATA+TGG + chr5.2:17854695-17854714 MS.gene84977:CDS 40.0%
ATAGATGGCAGAGCTACATT+TGG - chr5.2:17854509-17854528 None:intergenic 40.0%
ATGCAGATACAAGATCACAC+TGG + chr5.2:17855868-17855887 MS.gene84977:CDS 40.0%
ATGTGTCCTGTGTTGAATAC+CGG + chr5.2:17853901-17853920 MS.gene84977:intron 40.0%
ATTTACCATTTCCGTCCCAT+TGG + chr5.2:17855184-17855203 MS.gene84977:CDS 40.0%
CAACATCCTTAGCAAACTGA+TGG - chr5.2:17857538-17857557 None:intergenic 40.0%
CATAATCTCTACCAGTTGGA+AGG - chr5.2:17856230-17856249 None:intergenic 40.0%
CGATCACAACATGTACACTT+TGG + chr5.2:17857689-17857708 MS.gene84977:CDS 40.0%
CGGAAATGGTAAATCTGTTG+TGG - chr5.2:17855178-17855197 None:intergenic 40.0%
CTGCAAAATATTTGCGACTC+TGG + chr5.2:17855400-17855419 MS.gene84977:CDS 40.0%
CTGCACTCATATTAGGACAT+TGG - chr5.2:17856602-17856621 None:intergenic 40.0%
CTGCATGACATATATGAACC+AGG - chr5.2:17856321-17856340 None:intergenic 40.0%
CTTCCAACTGGTAGAGATTA+TGG + chr5.2:17856228-17856247 MS.gene84977:CDS 40.0%
GAATAAACACTGCTAGCTGT+AGG - chr5.2:17854551-17854570 None:intergenic 40.0%
GATATGGGAATTATCCTTGG+AGG - chr5.2:17854827-17854846 None:intergenic 40.0%
GCAAATCAAGTGAGTCAGTA+TGG + chr5.2:17856258-17856277 MS.gene84977:CDS 40.0%
GCAGATATGGGAATTATCCT+TGG - chr5.2:17854830-17854849 None:intergenic 40.0%
GGAGTAAAACTTCCTCCTAT+TGG - chr5.2:17854218-17854237 None:intergenic 40.0%
GTCTACCTGATTAAAGGTGA+TGG + chr5.2:17857564-17857583 MS.gene84977:intron 40.0%
GTTCTCCATCACCTTTAATC+AGG - chr5.2:17857572-17857591 None:intergenic 40.0%
GTTTCCGCAATCCACAATAT+GGG + chr5.2:17854696-17854715 MS.gene84977:CDS 40.0%
TAAAGCCAGAGTAACAGCTA+AGG + chr5.2:17854880-17854899 MS.gene84977:CDS 40.0%
TAACAGCTAAGGGAGAACTT+AGG + chr5.2:17854891-17854910 MS.gene84977:CDS 40.0%
TAGCCTCTGTGCCAATAATT+TGG + chr5.2:17854259-17854278 MS.gene84977:intron 40.0%
TAGTTTCTTAACTAGTGCCC+CGG - chr5.2:17857170-17857189 None:intergenic 40.0%
TCATACCTCCAATGCTGAAA+AGG - chr5.2:17857719-17857738 None:intergenic 40.0%
TGAAGTCGGTAAAGTCTATC+TGG + chr5.2:17855033-17855052 MS.gene84977:CDS 40.0%
TGAATTAGGGTTTAGGAGAC+TGG + chr5.2:17857490-17857509 MS.gene84977:intron 40.0%
TGCTATAAATGCCAACAACC+TGG + chr5.2:17856465-17856484 MS.gene84977:CDS 40.0%
TGGTGCCTAACAAAAAACAC+TGG + chr5.2:17857005-17857024 MS.gene84977:intron 40.0%
TTCCTACCAAGGAGAAATAC+GGG + chr5.2:17854967-17854986 MS.gene84977:CDS 40.0%
TTCTACCAATAATTGGCTGG+TGG - chr5.2:17855497-17855516 None:intergenic 40.0%
TTGGGTTTATGATTGCGTGT+TGG + chr5.2:17857437-17857456 MS.gene84977:intron 40.0%
TTTCAATGTCACCAATGGGA+CGG - chr5.2:17855198-17855217 None:intergenic 40.0%
TTTCTGGATGCTCCATAACA+TGG - chr5.2:17857745-17857764 None:intergenic 40.0%
! AAAGTCTATCTGGTTTCCAG+GGG + chr5.2:17855043-17855062 MS.gene84977:CDS 40.0%
! AAATACTTTTCCCTGACCTC+GGG - chr5.2:17854930-17854949 None:intergenic 40.0%
! AAATGTAGCTCTGCCATCTA+TGG + chr5.2:17854508-17854527 MS.gene84977:CDS 40.0%
! AAGTCCCATATTGTGGATTG+CGG - chr5.2:17854703-17854722 None:intergenic 40.0%
! ACTTTTGAACCGGGTTTATG+TGG + chr5.2:17856718-17856737 MS.gene84977:intron 40.0%
! AGCAGTTCTTTTGCTTCATC+AGG + chr5.2:17856291-17856310 MS.gene84977:CDS 40.0%
! ATGGGGGAGTTTTTGCAATA+CGG + chr5.2:17855366-17855385 MS.gene84977:CDS 40.0%
! CTAGGAGGTTTTTATGGGAT+GGG + chr5.2:17854093-17854112 MS.gene84977:intron 40.0%
! GATCTTTTGGATTCCTACCA+AGG + chr5.2:17854956-17854975 MS.gene84977:CDS 40.0%
! GTAAAAGCCTCTGGAAAATC+AGG - chr5.2:17855520-17855539 None:intergenic 40.0%
! GTAAAGTCTATCTGGTTTCC+AGG + chr5.2:17855041-17855060 MS.gene84977:CDS 40.0%
! TCTAGGAGGTTTTTATGGGA+TGG + chr5.2:17854092-17854111 MS.gene84977:intron 40.0%
! TGATTGCGTGTTGGTATTTG+TGG + chr5.2:17857446-17857465 MS.gene84977:intron 40.0%
! TTGGAAGTCCTTTTCAGCAT+TGG + chr5.2:17857708-17857727 MS.gene84977:CDS 40.0%
!! AAAGGTGATGGAGAACTGAA+GGG + chr5.2:17857576-17857595 MS.gene84977:intron 40.0%
!! AAGAACGAGTTGGTTCATTC+TGG + chr5.2:17852843-17852862 MS.gene84977:CDS 40.0%
!! ACTGACTCACTTGATTTGCT+GGG - chr5.2:17856257-17856276 None:intergenic 40.0%
!! AGTTCTGGATCTGCAAGATA+CGG + chr5.2:17854575-17854594 MS.gene84977:CDS 40.0%
!! CAGGTGGATTTCTAAGATGT+AGG - chr5.2:17856380-17856399 None:intergenic 40.0%
!! CATCAGTTTGCTAAGGATGT+TGG + chr5.2:17857536-17857555 MS.gene84977:intron 40.0%
!! GTATGTCCATCAGTTTGCTA+AGG + chr5.2:17857529-17857548 MS.gene84977:intron 40.0%
!! TAAAGGTGATGGAGAACTGA+AGG + chr5.2:17857575-17857594 MS.gene84977:intron 40.0%
!! TACTGACTCACTTGATTTGC+TGG - chr5.2:17856258-17856277 None:intergenic 40.0%
!!! GATTGTGAAGGTGCTTCTTT+TGG - chr5.2:17854374-17854393 None:intergenic 40.0%
!!! TGTTTTTGGAGGGACCTATT+TGG + chr5.2:17857046-17857065 MS.gene84977:intron 40.0%
AACACAGGACACATCCATGT+AGG - chr5.2:17853895-17853914 None:intergenic 45.0%
AAGATCACACTGGCATGACA+TGG + chr5.2:17855878-17855897 MS.gene84977:CDS 45.0%
AAGCCTTTCATGGGAAGTCT+CGG + chr5.2:17853926-17853945 MS.gene84977:intron 45.0%
AAGGTTATCGACAATGGGGA+TGG + chr5.2:17855781-17855800 MS.gene84977:CDS 45.0%
AAGTTGCCCGTATTTCTCCT+TGG - chr5.2:17854976-17854995 None:intergenic 45.0%
AATACCGGACAAGCCTTTCA+TGG + chr5.2:17853916-17853935 MS.gene84977:intron 45.0%
AATGCCAACAACCTGGTCAT+TGG + chr5.2:17856472-17856491 MS.gene84977:CDS 45.0%
ACGTGAAGTTCATCCACACA+TGG + chr5.2:17857664-17857683 MS.gene84977:CDS 45.0%
AGATCACACTGGCATGACAT+GGG + chr5.2:17855879-17855898 MS.gene84977:CDS 45.0%
AGGTTATCGACAATGGGGAT+GGG + chr5.2:17855782-17855801 MS.gene84977:CDS 45.0%
AGTTATACAGCCATGCGTTG+AGG + chr5.2:17855138-17855157 MS.gene84977:CDS 45.0%
AGTTTCTTAACTAGTGCCCC+GGG - chr5.2:17857169-17857188 None:intergenic 45.0%
ATACCGGACAAGCCTTTCAT+GGG + chr5.2:17853917-17853936 MS.gene84977:intron 45.0%
ATGCCAACAACCTGGTCATT+GGG + chr5.2:17856473-17856492 MS.gene84977:CDS 45.0%
ATGGCCGTGAATCTAACTCA+GGG + chr5.2:17852648-17852667 MS.gene84977:CDS 45.0%
ATGTCATGCAGCAATTGTGG+AGG + chr5.2:17856330-17856349 MS.gene84977:CDS 45.0%
CAATAATTGGCTGGTGGCAA+TGG - chr5.2:17855491-17855510 None:intergenic 45.0%
CAATCAGCTGCTGGTCAATT+AGG + chr5.2:17854419-17854438 MS.gene84977:CDS 45.0%
CAGCTTAGGAAGATCATGAC+TGG - chr5.2:17857607-17857626 None:intergenic 45.0%
CAGTCATGATCTTCCTAAGC+TGG + chr5.2:17857605-17857624 MS.gene84977:CDS 45.0%
CATTGCCACCAGCCAATTAT+TGG + chr5.2:17855489-17855508 MS.gene84977:CDS 45.0%
CTACAAGGCAAAGTAACCAG+GGG - chr5.2:17853724-17853743 None:intergenic 45.0%
CTAGCTGTAGGATTCACAGT+CGG - chr5.2:17854539-17854558 None:intergenic 45.0%
CTATTGGGGTACAAAGGAGA+TGG - chr5.2:17854779-17854798 None:intergenic 45.0%
CTCCAGTTGAAAGACATGTC+TGG + chr5.2:17855322-17855341 MS.gene84977:CDS 45.0%
CTTGATTGGAAAACCTGACC+CGG + chr5.2:17854346-17854365 MS.gene84977:CDS 45.0%
GAAGAAATGATGCTCCTCCA+AGG + chr5.2:17854810-17854829 MS.gene84977:CDS 45.0%
GAGCATCCAGAAAGAGATAC+GGG + chr5.2:17857752-17857771 MS.gene84977:CDS 45.0%
GAGGTATGAGCTCCATGTTA+TGG + chr5.2:17857730-17857749 MS.gene84977:CDS 45.0%
GCTACAAGGCAAAGTAACCA+GGG - chr5.2:17853725-17853744 None:intergenic 45.0%
GGAAACAGTAATACAGGGCA+AGG + chr5.2:17856636-17856655 MS.gene84977:CDS 45.0%
GGAAATGTACAATCAGCTGC+TGG + chr5.2:17854410-17854429 MS.gene84977:CDS 45.0%
GGTCAATTAGGAAGCAATGC+TGG + chr5.2:17854431-17854450 MS.gene84977:CDS 45.0%
GGTCTTGAAGTCCCATATTG+TGG - chr5.2:17854710-17854729 None:intergenic 45.0%
GTCCCATAATCTCTACCAGT+TGG - chr5.2:17856234-17856253 None:intergenic 45.0%
TAGCTGTAGGATTCACAGTC+GGG - chr5.2:17854538-17854557 None:intergenic 45.0%
TAGTATGAGTGCAGCCAACA+GGG + chr5.2:17856509-17856528 MS.gene84977:CDS 45.0%
TATTGTGGATGTGATTGCCG+TGG + chr5.2:17855234-17855253 MS.gene84977:CDS 45.0%
TGACTCACAGCAGATTGTGA+AGG - chr5.2:17854386-17854405 None:intergenic 45.0%
TGCTACAAGGCAAAGTAACC+AGG - chr5.2:17853726-17853745 None:intergenic 45.0%
TGCTATAAATGCAACCAGCC+TGG + chr5.2:17856564-17856583 MS.gene84977:CDS 45.0%
TGCTATCAACACAACTGGAC+CGG + chr5.2:17856200-17856219 MS.gene84977:CDS 45.0%
TGTGAACTGATGACTCTAGG+AGG + chr5.2:17854078-17854097 MS.gene84977:intron 45.0%
TTCTCCCTTAGCTGTTACTC+TGG - chr5.2:17854888-17854907 None:intergenic 45.0%
TTGAACAGTGGTTCCCATAC+AGG + chr5.2:17854467-17854486 MS.gene84977:CDS 45.0%
! AGGTTTAGGATAAGGTGGAG+GGG - chr5.2:17854612-17854631 None:intergenic 45.0%
! CAGGTTTAGGATAAGGTGGA+GGG - chr5.2:17854613-17854632 None:intergenic 45.0%
! CATTCTGGAAGGTTGCAGAA+AGG + chr5.2:17852858-17852877 MS.gene84977:CDS 45.0%
! CGTGTTGGTATTTGTGGCAA+TGG + chr5.2:17857452-17857471 MS.gene84977:intron 45.0%
! GGAGCATCATTTCTTCCTGT+AGG - chr5.2:17854806-17854825 None:intergenic 45.0%
! GGAGCATCCAGAAAGAGATA+CGG + chr5.2:17857751-17857770 MS.gene84977:CDS 45.0%
! GGCAACTTGCTTTAATACCG+TGG + chr5.2:17854988-17855007 MS.gene84977:CDS 45.0%
! GGGAGTTTTTGCAATACGGA+AGG + chr5.2:17855370-17855389 MS.gene84977:CDS 45.0%
! GGTAGAACCTGATTTTCCAG+AGG + chr5.2:17855510-17855529 MS.gene84977:CDS 45.0%
! TCAGGTTTAGGATAAGGTGG+AGG - chr5.2:17854614-17854633 None:intergenic 45.0%
! TCCAGAGGCTTTTACACTGA+GGG + chr5.2:17855525-17855544 MS.gene84977:CDS 45.0%
! TGGTCTGTTCAAACTGACTC+CGG - chr5.2:17854639-17854658 None:intergenic 45.0%
! TTCCAGAGGCTTTTACACTG+AGG + chr5.2:17855524-17855543 MS.gene84977:CDS 45.0%
!! AAGGTGATGGAGAACTGAAG+GGG + chr5.2:17857577-17857596 MS.gene84977:intron 45.0%
!! ACGAGTTGGTTCATTCTGGA+AGG + chr5.2:17852847-17852866 MS.gene84977:CDS 45.0%
!! ATGGGTTACTGCTTTTCAGG+AGG + chr5.2:17855897-17855916 MS.gene84977:CDS 45.0%
!! CTGACTCACTTGATTTGCTG+GGG - chr5.2:17856256-17856275 None:intergenic 45.0%
!! GAAGTCCTTTTCAGCATTGG+AGG + chr5.2:17857711-17857730 MS.gene84977:CDS 45.0%
!! GACATGGGTTACTGCTTTTC+AGG + chr5.2:17855894-17855913 MS.gene84977:CDS 45.0%
!! TGAGGTGCTGCACTCATATT+AGG - chr5.2:17856609-17856628 None:intergenic 45.0%
!! TGGGTTACTGCTTTTCAGGA+GGG + chr5.2:17855898-17855917 MS.gene84977:CDS 45.0%
!! TTATTAATCTATTATTAAAT+AGG - chr5.2:17853420-17853439 None:intergenic 5.0%
AACAGACCAGCGTCAGTGAA+TGG + chr5.2:17854650-17854669 MS.gene84977:CDS 50.0%
AACAGTGGTTCCCATACAGG+TGG + chr5.2:17854470-17854489 MS.gene84977:CDS 50.0%
AACCATCGGAGAGAACGACT+CGG - chr5.2:17852791-17852810 None:intergenic 50.0%
AATCCACCTGAACAGTCTGC+TGG + chr5.2:17856390-17856409 MS.gene84977:CDS 50.0%
AATGCAACCAGCCTGGACAT+TGG + chr5.2:17856571-17856590 MS.gene84977:CDS 50.0%
ACAGACCAGCGTCAGTGAAT+GGG + chr5.2:17854651-17854670 MS.gene84977:CDS 50.0%
ACCAGACACCGTGTTGAAGT+AGG - chr5.2:17856421-17856440 None:intergenic 50.0%
AGCTTGCCCGTATCTCTTTC+TGG - chr5.2:17857761-17857780 None:intergenic 50.0%
AGGGTTTAGGAGACTGGAAG+TGG + chr5.2:17857496-17857515 MS.gene84977:intron 50.0%
AGTGCAGCACCTCAATCTCA+TGG + chr5.2:17856615-17856634 MS.gene84977:CDS 50.0%
ATCCACCTGAACAGTCTGCT+GGG + chr5.2:17856391-17856410 MS.gene84977:CDS 50.0%
ATGCAACCAGCCTGGACATT+GGG + chr5.2:17856572-17856591 MS.gene84977:CDS 50.0%
CAATCTGCTGTGAGTCATGC+AGG + chr5.2:17854389-17854408 MS.gene84977:CDS 50.0%
CACATCGGAAGAATTGCACC+CGG + chr5.2:17852704-17852723 MS.gene84977:CDS 50.0%
CCTTATCCTAAACCTGAGCC+CGG + chr5.2:17854617-17854636 MS.gene84977:CDS 50.0%
CGCACCCTGAGTTAGATTCA+CGG - chr5.2:17852655-17852674 None:intergenic 50.0%
CGCTACACAGAAGAACGAGT+TGG + chr5.2:17852833-17852852 MS.gene84977:CDS 50.0%
CTAGTATGAGTGCAGCCAAC+AGG + chr5.2:17856508-17856527 MS.gene84977:CDS 50.0%
CTATCAACACAACTGGACCG+GGG + chr5.2:17856202-17856221 MS.gene84977:CDS 50.0%
CTTCAGCCTGAGAAAGCAGA+AGG + chr5.2:17856162-17856181 MS.gene84977:CDS 50.0%
CTTCCCATGAAAGGCTTGTC+CGG - chr5.2:17853923-17853942 None:intergenic 50.0%
CTTCCTGTAGGCGCTCTATT+GGG - chr5.2:17854794-17854813 None:intergenic 50.0%
GCTATCAACACAACTGGACC+GGG + chr5.2:17856201-17856220 MS.gene84977:CDS 50.0%
GCTTGTCCGGTATTCAACAC+AGG - chr5.2:17853910-17853929 None:intergenic 50.0%
GGACTTCAGACAAGCCTGAT+TGG + chr5.2:17855665-17855684 MS.gene84977:CDS 50.0%
GGCCAGACATGTCTTTCAAC+TGG - chr5.2:17855327-17855346 None:intergenic 50.0%
GGTACAAAGGAGATGGCTGT+TGG - chr5.2:17854772-17854791 None:intergenic 50.0%
GTGGTACCTTCTGCTTTCTC+AGG - chr5.2:17856171-17856190 None:intergenic 50.0%
GTTTCTTAACTAGTGCCCCG+GGG - chr5.2:17857168-17857187 None:intergenic 50.0%
TAAGACCCATTCACTGACGC+TGG - chr5.2:17854659-17854678 None:intergenic 50.0%
TACTTCAACACGGTGTCTGG+TGG + chr5.2:17856420-17856439 MS.gene84977:CDS 50.0%
TATAGCAATGCCCGAGGTCA+GGG + chr5.2:17854917-17854936 MS.gene84977:CDS 50.0%
TCGACAATGGGGATGGGAAA+TGG + chr5.2:17855788-17855807 MS.gene84977:CDS 50.0%
TCTTCCTGTAGGCGCTCTAT+TGG - chr5.2:17854795-17854814 None:intergenic 50.0%
TCTTGTTAACTAGTGCCCCC+GGG + chr5.2:17857149-17857168 MS.gene84977:intron 50.0%
TGCCCGTATTTCTCCTTGGT+AGG - chr5.2:17854972-17854991 None:intergenic 50.0%
TGTCACCAATGGGACGGAAA+TGG - chr5.2:17855192-17855211 None:intergenic 50.0%
TTCCTGTAGGCGCTCTATTG+GGG - chr5.2:17854793-17854812 None:intergenic 50.0%
TTGGAACATTCCTCCCTTCC+TGG - chr5.2:17855561-17855580 None:intergenic 50.0%
TTTCTTAACTAGTGCCCCGG+GGG - chr5.2:17857167-17857186 None:intergenic 50.0%
TTTGCTTCATCAGGTGCTCC+TGG + chr5.2:17856300-17856319 MS.gene84977:CDS 50.0%
! AACAGGGTATCTGGTGGATC+GGG + chr5.2:17856525-17856544 MS.gene84977:CDS 50.0%
! AGGCTTTTACACTGAGGGGA+TGG + chr5.2:17855530-17855549 MS.gene84977:CDS 50.0%
! CAACAGGGTATCTGGTGGAT+CGG + chr5.2:17856524-17856543 MS.gene84977:CDS 50.0%
! CCAGAGGCTTTTACACTGAG+GGG + chr5.2:17855526-17855545 MS.gene84977:CDS 50.0%
! CTGTTGGCTGCACTCATACT+AGG - chr5.2:17856510-17856529 None:intergenic 50.0%
! GGCTCAGGTTTAGGATAAGG+TGG - chr5.2:17854617-17854636 None:intergenic 50.0%
! GGTCTGTTCAAACTGACTCC+GGG - chr5.2:17854638-17854657 None:intergenic 50.0%
! GTCTTGTTAACTAGTGCCCC+CGG + chr5.2:17857148-17857167 MS.gene84977:intron 50.0%
! GTTGGTTCATAGGCTGAGGA+GGG - chr5.2:17854754-17854773 None:intergenic 50.0%
!! GGAGATGGCTGTTGGTTCAT+AGG - chr5.2:17854764-17854783 None:intergenic 50.0%
!! GTTACTGCTTTTCAGGAGGG+CGG + chr5.2:17855901-17855920 MS.gene84977:CDS 50.0%
!! TGTTGGTTCATAGGCTGAGG+AGG - chr5.2:17854755-17854774 None:intergenic 50.0%
!!! AAGGTGCTTCTTTTGGTGCC+GGG - chr5.2:17854367-17854386 None:intergenic 50.0%
!!! GAAGGTGCTTCTTTTGGTGC+CGG - chr5.2:17854368-17854387 None:intergenic 50.0%
ACAACCTGGTCATTGGGCGA+AGG + chr5.2:17856479-17856498 MS.gene84977:CDS 55.0%
ACAGTCGGGCGATCCATAGA+TGG - chr5.2:17854524-17854543 None:intergenic 55.0%
ACTGAGGGGATGGTTTGACC+AGG + chr5.2:17855540-17855559 MS.gene84977:CDS 55.0%
AGGACCTATAGCAATGCCCG+AGG + chr5.2:17854911-17854930 MS.gene84977:CDS 55.0%
AGGCTACCCCTCGCATATGA+AGG + chr5.2:17853692-17853711 MS.gene84977:intron 55.0%
AGGGGATGGTTTGACCAGGA+AGG + chr5.2:17855544-17855563 MS.gene84977:CDS 55.0%
ATGGGAAATGGCGCTGTGAC+AGG + chr5.2:17855800-17855819 MS.gene84977:CDS 55.0%
CCCCTCAGTGTAAAAGCCTC+TGG - chr5.2:17855529-17855548 None:intergenic 55.0%
CGATCCACCAGATACCCTGT+TGG - chr5.2:17856526-17856545 None:intergenic 55.0%
CGTAGCCCTTCATATGCGAG+GGG - chr5.2:17853701-17853720 None:intergenic 55.0%
CTATAGCAATGCCCGAGGTC+AGG + chr5.2:17854916-17854935 MS.gene84977:CDS 55.0%
CTTGTTAACTAGTGCCCCCG+GGG + chr5.2:17857150-17857169 MS.gene84977:intron 55.0%
GAAATGTTAACCGGTGCCCC+CGG - chr5.2:17857302-17857321 None:intergenic 55.0%
GATGGTTTGACCAGGAAGGG+AGG + chr5.2:17855548-17855567 MS.gene84977:CDS 55.0%
GCACCGAGACTTCCCATGAA+AGG - chr5.2:17853932-17853951 None:intergenic 55.0%
GCCTACTTCAACACGGTGTC+TGG + chr5.2:17856417-17856436 MS.gene84977:CDS 55.0%
GCGTAGCCCTTCATATGCGA+GGG - chr5.2:17853702-17853721 None:intergenic 55.0%
GGCGCTCTATTGGGGTACAA+AGG - chr5.2:17854785-17854804 None:intergenic 55.0%
GGCTACCCCTCGCATATGAA+GGG + chr5.2:17853693-17853712 MS.gene84977:intron 55.0%
GGGGATGGTTTGACCAGGAA+GGG + chr5.2:17855545-17855564 MS.gene84977:CDS 55.0%
TACCGAGTCGTTCTCTCCGA+TGG + chr5.2:17852786-17852805 MS.gene84977:CDS 55.0%
TCATATGCGAGGGGTAGCCT+TGG - chr5.2:17853692-17853711 None:intergenic 55.0%
TCCACCTGAACAGTCTGCTG+GGG + chr5.2:17856392-17856411 MS.gene84977:CDS 55.0%
TCGCCCAATGACCAGGTTGT+TGG - chr5.2:17856479-17856498 None:intergenic 55.0%
TGTTGTGATCGCGCCATGTG+TGG - chr5.2:17857680-17857699 None:intergenic 55.0%
! AACACGGTGTCTGGTGGATC+GGG + chr5.2:17856426-17856445 MS.gene84977:CDS 55.0%
! AATTCCTTAACCGGGGGCAC+CGG + chr5.2:17857289-17857308 MS.gene84977:intron 55.0%
! AGTGCAGCCAACAGGGTATC+TGG + chr5.2:17856516-17856535 MS.gene84977:CDS 55.0%
! CAACACGGTGTCTGGTGGAT+CGG + chr5.2:17856425-17856444 MS.gene84977:CDS 55.0%
! CCGGGCTCAGGTTTAGGATA+AGG - chr5.2:17854620-17854639 None:intergenic 55.0%
! CTGACCTCGGGCATTGCTAT+AGG - chr5.2:17854918-17854937 None:intergenic 55.0%
! TACCCCAATAGAGCGCCTAC+AGG + chr5.2:17854788-17854807 MS.gene84977:CDS 55.0%
! TTCAAACTGACTCCGGGCTC+AGG - chr5.2:17854632-17854651 None:intergenic 55.0%
!! CATTGGCTTGCCCAATGTCC+AGG - chr5.2:17856585-17856604 None:intergenic 55.0%
!! GGCTGTTGGTTCATAGGCTG+AGG - chr5.2:17854758-17854777 None:intergenic 55.0%
ACCTGAACAGTCTGCTGGGG+GGG + chr5.2:17856395-17856414 MS.gene84977:CDS 60.0%
CACCTGAACAGTCTGCTGGG+GGG + chr5.2:17856394-17856413 MS.gene84977:CDS 60.0%
CAGTCCTTCGCCCAATGACC+AGG - chr5.2:17856486-17856505 None:intergenic 60.0%
CATATGAAGGGCTACGCCCC+TGG + chr5.2:17853705-17853724 MS.gene84977:intron 60.0%
CCACCTGAACAGTCTGCTGG+GGG + chr5.2:17856393-17856412 MS.gene84977:CDS 60.0%
CTACCAGTTGGAAGGCTCCC+CGG - chr5.2:17856222-17856241 None:intergenic 60.0%
CTGACTCCGGGCTCAGGTTT+AGG - chr5.2:17854626-17854645 None:intergenic 60.0%
GGCGTAGCCCTTCATATGCG+AGG - chr5.2:17853703-17853722 None:intergenic 60.0%
TGGGGGGGCCTACTTCAACA+CGG + chr5.2:17856410-17856429 MS.gene84977:CDS 60.0%
TTAACCGGTGCCCCCGGTTA+AGG - chr5.2:17857296-17857315 None:intergenic 60.0%
! AGCTGGCTTCAGACTTCCCC+TGG - chr5.2:17855062-17855081 None:intergenic 60.0%
! AGGGTATCTGGTGGATCGGG+TGG + chr5.2:17856528-17856547 MS.gene84977:CDS 60.0%
! GCAGCCAACAGGGTATCTGG+TGG + chr5.2:17856519-17856538 MS.gene84977:CDS 60.0%
!!! GCTTCTTTTGGTGCCGGGTC+AGG - chr5.2:17854362-17854381 None:intergenic 60.0%
CCCCCAGCAGACTGTTCAGG+TGG - chr5.2:17856396-17856415 None:intergenic 65.0%
GAGGGCGGCGAGGACATCAT+GGG + chr5.2:17855916-17855935 MS.gene84977:CDS 65.0%
GGCTTGCCCAATGTCCAGGC+TGG - chr5.2:17856581-17856600 None:intergenic 65.0%
GGTGGATCGGGTGGTGCTTC+AGG + chr5.2:17856438-17856457 MS.gene84977:CDS 65.0%
! ACGGTGTCTGGTGGATCGGG+TGG + chr5.2:17856429-17856448 MS.gene84977:CDS 65.0%
!! TGCTTTTCAGGAGGGCGGCG+AGG + chr5.2:17855906-17855925 MS.gene84977:CDS 65.0%
GCCCCCCCAGCAGACTGTTC+AGG - chr5.2:17856399-17856418 None:intergenic 70.0%
GGACCGGGGAGCCTTCCAAC+TGG + chr5.2:17856216-17856235 MS.gene84977:CDS 70.0%
GGAGGGCGGCGAGGACATCA+TGG + chr5.2:17855915-17855934 MS.gene84977:CDS 70.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 17852648 17857797 17852648 ID=MS.gene84977
chr5.2 mRNA 17852648 17857797 17852648 ID=MS.gene84977.t1;Parent=MS.gene84977
chr5.2 exon 17852648 17852931 17852648 ID=MS.gene84977.t1.exon1;Parent=MS.gene84977.t1
chr5.2 CDS 17852648 17852931 17852648 ID=cds.MS.gene84977.t1;Parent=MS.gene84977.t1
chr5.2 exon 17854301 17856666 17854301 ID=MS.gene84977.t1.exon2;Parent=MS.gene84977.t1
chr5.2 CDS 17854301 17856666 17854301 ID=cds.MS.gene84977.t1;Parent=MS.gene84977.t1
chr5.2 exon 17857580 17857797 17857580 ID=MS.gene84977.t1.exon3;Parent=MS.gene84977.t1
chr5.2 CDS 17857580 17857797 17857580 ID=cds.MS.gene84977.t1;Parent=MS.gene84977.t1
Gene Sequence

>MS.gene84977

ATGGCCGTGAATCTAACTCAGGGTGCGATAGTAACGATGTGTTTCACATCGGAAAACACATCGGAAGAATTGCACCCGGTGTTACAAGTTATCGATTTGAAGCTTGTTCAGTCGCAGCAGAACAGTGCTACTGAGAGATACCGAGTCGTTCTCTCCGATGGTTTGTATTATCAACAAGGAATGCTCGCTACACAGAAGAACGAGTTGGTTCATTCTGGAAGGTTGCAGAAAGGTTCCATTGTTAAGCTTTCTCAGTTCATTTGTAACGATGTTCAGAATCGCAAGTAAGTTTCTTCTTTTGCATGCCTTTTTTTTTCGATTTCTTTATTTTTTGTTTTTGATTTTTACATGTATTGGAAATGGTATCCGAAATTAGATTTTTTTAGGTTAAGTATGTGTAGATGGTGAATGATGGGTTTTTATGTGTTGTTACTTTCAGCTGCGAAGCTCGCAAAAAATTTATGCAGGGGCCAACTATAAAGAATTTTTTTTTTTTTTTTTTTTTGAAAACAAACATATTAAATTTAAGGATAAAATCTATTTTTAGTACCATAAATTATATTTTTTTAGGTTTAGTCCTTAAAAAAATTGTTCAATTTTTGTCTCAGTTTTTAAAATTTTACAAAATAATGTGTTTTTAGTCTTGAATTTAATCTCTAACAAAAAATTAAGGACTAAAATTAACAAATCTTATGAACTTAACATGAAAATCGCCATTTAAAAACGTTGGGCAAAATGCGTTTCAAAAACCCAATTTCATCAATAATTGCCTATTTAATAATAGATTAATAATGTCTTTTTAAATGTAAATAAATAGGTTATTTGCAAAAAAACTCGTTGTTCATTTAATTATGACTATTGTCTTGATAATTTTTATTGTTGAAAAAGGTTTCTCTATTGTTGTTGTTGAGACCGGAAGTATCAAATCAATACAAATAAATCTATCAATCTTGTAGTAATTTTTTTTTTTACTTTGTTATTTGTGCTAATGTTTGCAATTAAACTTGTTTAGGGTAGCTCAATGTTTATTATTTGGGGTAGCCAAGGCTACCCCTCGCATATGAAGGGCTACGCCCCTGGTTACTTTGCCTTGTAGCAGTGAAATTTTCAATTTTTGAAGCCGGATTTGATTAAAAGAAGAAATTTTTCTAGGGCTGTTTATAATTGTGACAACAATAATAATCTGAGAAAACAACATAATTCAGTGTTATCACATGCAAAGGTGGTTGTGTTGATTTCATTCACCTACATGGATGTGTCCTGTGTTGAATACCGGACAAGCCTTTCATGGGAAGTCTCGGTGCTACAAAGACAATTGATTTACATAGTAGTTTATTATTATTTTTACAAAGACATGGATAGTAGTTTATTATCTGAGATTAAAATCAATCACCGGATTTTTTTTTGTTATGTTTTTACATTTTAAGACATGTGAACTGATGACTCTAGGAGGTTTTTATGGGATGGGCGATGTAGCAATTATATAGTAGTTGAGTAATTTCATTAAAAGAATTTTTTTTTTCTGGGTTTTTTGTTTTGTTTTTGAACTAGTTAAATGCTTTACTAACCAATAGGAGGAAGTTTTACTCCTTGTTGTAGCTTAATTGTTTATAGCCTCTGTGCCAATAATTTGGTTTTTTGATTTACAAACAGAATTATCATCATAGTTGATTTGGATGTTATAATGGACAAATGTGACTTGATTGGAAAACCTGACCCGGCACCAAAAGAAGCACCTTCACAATCTGCTGTGAGTCATGCAGGAAATGTACAATCAGCTGCTGGTCAATTAGGAAGCAATGCTGGAAACTCACAGTATTTGAACAGTGGTTCCCATACAGGTGGTGTTAATGTTAGACCAAATGTAGCTCTGCCATCTATGGATCGCCCGACTGTGAATCCTACAGCTAGCAGTGTTTATTCTAACAGTTCTGGATCTGCAAGATACGGTGCATCTAATGCCCCTCCACCTTATCCTAAACCTGAGCCCGGAGTCAGTTTGAACAGACCAGCGTCAGTGAATGGGTCTTATCGTGAACAGAATACAAGTTTCCGCAATCCACAATATGGGACTTCAAGACCAGTGCAAAATTCTTTTGTTCGCCCTCCTCAGCCTATGAACCAACAGCCATCTCCTTTGTACCCCAATAGAGCGCCTACAGGAAGAAATGATGCTCCTCCAAGGATAATTCCCATATCTGCTTTGAATCCATATCAGAATATGTGGACAATTAAAGCCAGAGTAACAGCTAAGGGAGAACTTAGGACCTATAGCAATGCCCGAGGTCAGGGAAAAGTATTTTCTTTTGATCTTTTGGATTCCTACCAAGGAGAAATACGGGCAACTTGCTTTAATACCGTGGCTGAACAGTTCTATAATGAAATTGAAGTCGGTAAAGTCTATCTGGTTTCCAGGGGAAGTCTGAAGCCAGCTCAAAAGAATTTTAATCACCTACGTAATGATCAAGAGATAACTCTTGATATCACATCAGTTATACAGCCATGCGTTGAGGATGATAACTTAATTCCACAACAGATTTACCATTTCCGTCCCATTGGTGACATTGAAAATATGCAAAACAACAGTATTGTGGATGTGATTGCCGTGGTTACTTCTATCAGTCCTACAGCATCAATCATAAGAAAAAATGGCACTGAAACACAGAAGAGATCTCTCCAGTTGAAAGACATGTCTGGCCGAAGTGTTGAATTAACTGTATGGGGGAGTTTTTGCAATACGGAAGGACAAAAGCTGCAAAATATTTGCGACTCTGGGAAATTTCCAATTTTGGTTGTAAAAACTGCCAGAGTAAATGATTTCAATGGGAAGTCTATTGGGACCATTGCCACCAGCCAATTATTGGTAGAACCTGATTTTCCAGAGGCTTTTACACTGAGGGGATGGTTTGACCAGGAAGGGAGGAATGTTCCAAGTCAATCTATTTCCAGAGAATCATCTAGTTTTGGTAAAAGTGAAGTGCGGAAGACTATATCTCAAATTAAAGATGAAAACTTAGGGACTTCAGACAAGCCTGATTGGATATCTATATGTGCAAATGTTGTATTTTTTAAATATGATAATTTTTGCTACACAGCTTGTCCTATCATGATAGGAGATAGACAATGTAACAAAAAGGTTATCGACAATGGGGATGGGAAATGGCGCTGTGACAGGTGTGAGCAGATAGTTGATGCTTGTGATTATAGGTACTTGCTGCAAATGCAGATACAAGATCACACTGGCATGACATGGGTTACTGCTTTTCAGGAGGGCGGCGAGGACATCATGGGTATGCCTGCAAAAGATTTGTATTCTGTGAAATTTGACGAACAAGATGAAGAAAAATTTAAAGAAATCATCAGTAAGGTTGTGTTCACAAAATACATGTTCAAGTTAAAAGTAAAAGAGGAGACATTCAATGACGAAGCACGTGTTAAGTCAACTGTAGTGAAAGCAGAGAAGGTTGTTAACTTTGCATCTGACTCTAAATCTCTTCTGGATTTGATTGATAAACTTCAGCCTGAGAAAGCAGAAGGTACCACTATTAACTCTGCTATCAACACAACTGGACCGGGGAGCCTTCCAACTGGTAGAGATTATGGGACCCCAGCAAATCAAGTGAGTCAGTATGGAAACCAACATAGCAGTTCTTTTGCTTCATCAGGTGCTCCTGGTTCATATATGTCATGCAGCAATTGTGGAGGCTCTGATCATAGCTCTGCACAATGCCTACATCTTAGAAATCCACCTGAACAGTCTGCTGGGGGGGCCTACTTCAACACGGTGTCTGGTGGATCGGGTGGTGCTTCAGGTAATTGCTATAAATGCCAACAACCTGGTCATTGGGCGAAGGACTGTCCTAGTATGAGTGCAGCCAACAGGGTATCTGGTGGATCGGGTGGTGCTTCAGGTAATTGCTATAAATGCAACCAGCCTGGACATTGGGCAAGCCAATGTCCTAATATGAGTGCAGCACCTCAATCTCATGGAAACAGTAATACAGGGCAAGGAAGATATGGTATTGCTCAAAATCAGCAGTATGGAAGACATTGAAATTTGGCAAAACACTACTTTTGAACCGGGTTTATGTGGAGTTCATTTGTATTTTGTTTTTTTTTTTGAAGTCATGTCTTAGAAGTTGTCTTTACTCTTGAATATGTAGATATAGATGACATAATTATGTGGTTTCGATGTGGCATTTCTTGTGCCGAACTTTTGCAAAATGCCACATGCATCTATTAATTTCAGCTCTCATGTCTTCTCCTTTTAGCTGTTACAATTGATCAAAATAGTGATATGCATATTTAACTGCTTGCTCATTCATCACTTCAAACAATTCAGTGCAAATACCAAAATTGGTGCCTAACAAAAAACACTGGTACCTATTTTGTTTTTGTTGTTTTTGGAGGGACCTATTTGGTCTTTATGCACACATTTTGAACTCATATGTGCTGAATAATACAAACAATACTTCATATATTATTGGGAAAATAAAAAGGGTCTTGTTAACTAGTGCCCCCGGGGCACTAGTTAAGAAACTAAAAGTAGAAAGAAAAGTCAAGTTTTGCATTGAAAAGAACATTTTTTTTTAACTTTCAAGGAGTAGAATACACAATTTTCAAGAAAAAATTTCCTTTTATAATTCCTTAACCGGGGGCACCGGTTAACATTTCCCAAATAAAAATATGAAAGATTGTAAAGATACTTTAGTGAAAGGCCTAGCATTCTAAATATTCATCGTGTGTTTGCCATTTTTAGAAATCGAATGGCTTCCATTCAAAATATTCCTTGGGTTTATGATTGCGTGTTGGTATTTGTGGCAATGGCACATAAAACAATTTTGAATTAGGGTTTAGGAGACTGGAAGTGGACAATGTTCAGTATGTCCATCAGTTTGCTAAGGATGTTGGACAATGTCTACCTGATTAAAGGTGATGGAGAACTGAAGGGGTCGACCAGTCATGATCTTCCTAAGCTGGTTCATAGAATCAAAGCTATGGCTTTTTGGGATTGTCACGTGAAGTTCATCCACACATGGCGCGATCACAACATGTACACTTTGGAAGTCCTTTTCAGCATTGGAGGTATGAGCTCCATGTTATGGAGCATCCAGAAAGAGATACGGGCAAGCTTTTGTTTGATGACTTAG
Protein sequence

>MS.gene84977.t1

MAVNLTQGAIVTMCFTSENTSEELHPVLQVIDLKLVQSQQNSATERYRVVLSDGLYYQQGMLATQKNELVHSGRLQKGSIVKLSQFICNDVQNRKIIIIVDLDVIMDKCDLIGKPDPAPKEAPSQSAVSHAGNVQSAAGQLGSNAGNSQYLNSGSHTGGVNVRPNVALPSMDRPTVNPTASSVYSNSSGSARYGASNAPPPYPKPEPGVSLNRPASVNGSYREQNTSFRNPQYGTSRPVQNSFVRPPQPMNQQPSPLYPNRAPTGRNDAPPRIIPISALNPYQNMWTIKARVTAKGELRTYSNARGQGKVFSFDLLDSYQGEIRATCFNTVAEQFYNEIEVGKVYLVSRGSLKPAQKNFNHLRNDQEITLDITSVIQPCVEDDNLIPQQIYHFRPIGDIENMQNNSIVDVIAVVTSISPTASIIRKNGTETQKRSLQLKDMSGRSVELTVWGSFCNTEGQKLQNICDSGKFPILVVKTARVNDFNGKSIGTIATSQLLVEPDFPEAFTLRGWFDQEGRNVPSQSISRESSSFGKSEVRKTISQIKDENLGTSDKPDWISICANVVFFKYDNFCYTACPIMIGDRQCNKKVIDNGDGKWRCDRCEQIVDACDYRYLLQMQIQDHTGMTWVTAFQEGGEDIMGMPAKDLYSVKFDEQDEEKFKEIISKVVFTKYMFKLKVKEETFNDEARVKSTVVKAEKVVNFASDSKSLLDLIDKLQPEKAEGTTINSAINTTGPGSLPTGRDYGTPANQVSQYGNQHSSSFASSGAPGSYMSCSNCGGSDHSSAQCLHLRNPPEQSAGGAYFNTVSGGSGGASGNCYKCQQPGHWAKDCPSMSAANRVSGGSGGASGNCYKCNQPGHWASQCPNMSAAPQSHGNSNTGQGRYGDGELKGSTSHDLPKLVHRIKAMAFWDCHVKFIHTWRDHNMYTLEVLFSIGGMSSMLWSIQKEIRASFCLMT