Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86432.t1 | XP_024633021.1 | 98.2 | 487 | 9 | 0 | 1 | 487 | 1 | 487 | 4.70E-225 | 790.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86432.t1 | Q9M8L9 | 68.1 | 489 | 147 | 3 | 6 | 487 | 2 | 488 | 9.4e-158 | 558.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86432.t1 | G7IIA0 | 98.2 | 487 | 9 | 0 | 1 | 487 | 1 | 487 | 3.4e-225 | 790.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene86432 | 0.802467 | 5.53E-49 | -1.69E-46 |
| MS.gene050654 | MS.gene86432 | 0.816799 | 4.59E-52 | -1.69E-46 |
| MS.gene052016 | MS.gene86432 | 0.804928 | 1.71E-49 | -1.69E-46 |
| MS.gene052609 | MS.gene86432 | 0.805801 | 1.12E-49 | -1.69E-46 |
| MS.gene053143 | MS.gene86432 | 0.811299 | 7.50E-51 | -1.69E-46 |
| MS.gene055513 | MS.gene86432 | 0.817924 | 2.56E-52 | -1.69E-46 |
| MS.gene056045 | MS.gene86432 | 0.810097 | 1.37E-50 | -1.69E-46 |
| MS.gene056181 | MS.gene86432 | 0.80638 | 8.46E-50 | -1.69E-46 |
| MS.gene056308 | MS.gene86432 | 0.821625 | 3.65E-53 | -1.69E-46 |
| MS.gene061006 | MS.gene86432 | 0.807404 | 5.14E-50 | -1.69E-46 |
| MS.gene061100 | MS.gene86432 | 0.852032 | 6.02E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene018243 | MS.gene86432 | PPI |
| MS.gene75991 | MS.gene86432 | PPI |
| MS.gene022024 | MS.gene86432 | PPI |
| MS.gene37173 | MS.gene86432 | PPI |
| MS.gene018234 | MS.gene86432 | PPI |
| MS.gene37165 | MS.gene86432 | PPI |
| MS.gene37166 | MS.gene86432 | PPI |
| MS.gene44762 | MS.gene86432 | PPI |
| MS.gene62008 | MS.gene86432 | PPI |
| MS.gene018235 | MS.gene86432 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86432.t1 | MTR_2g104180 | 98.357 | 487 | 8 | 0 | 1 | 487 | 1 | 487 | 0.0 | 966 |
| MS.gene86432.t1 | MTR_7g017630 | 45.433 | 416 | 218 | 4 | 73 | 483 | 47 | 458 | 6.25e-118 | 354 |
| MS.gene86432.t1 | MTR_6g016245 | 44.762 | 420 | 224 | 4 | 73 | 487 | 38 | 454 | 1.41e-112 | 340 |
| MS.gene86432.t1 | MTR_6g016295 | 43.961 | 414 | 224 | 4 | 79 | 487 | 46 | 456 | 8.75e-107 | 325 |
| MS.gene86432.t1 | MTR_6g016275 | 44.313 | 422 | 224 | 6 | 73 | 487 | 43 | 460 | 1.11e-106 | 325 |
| MS.gene86432.t1 | MTR_5g083770 | 40.749 | 427 | 245 | 5 | 62 | 483 | 5 | 428 | 6.88e-106 | 322 |
| MS.gene86432.t1 | MTR_3g072110 | 39.070 | 430 | 253 | 5 | 64 | 487 | 12 | 438 | 6.84e-103 | 315 |
| MS.gene86432.t1 | MTR_6g016270 | 43.095 | 420 | 231 | 4 | 73 | 487 | 45 | 461 | 1.02e-102 | 315 |
| MS.gene86432.t1 | MTR_5g083760 | 38.679 | 424 | 247 | 7 | 69 | 485 | 28 | 445 | 1.95e-95 | 296 |
| MS.gene86432.t1 | MTR_1396s0010 | 41.509 | 265 | 131 | 3 | 222 | 486 | 1 | 241 | 2.21e-59 | 196 |
| MS.gene86432.t1 | MTR_1396s0010 | 45.320 | 203 | 109 | 1 | 202 | 404 | 1 | 201 | 1.29e-51 | 174 |
| MS.gene86432.t1 | MTR_6g016245 | 45.000 | 200 | 106 | 3 | 289 | 487 | 190 | 386 | 1.08e-42 | 156 |
| MS.gene86432.t1 | MTR_6g016245 | 46.053 | 152 | 78 | 1 | 73 | 220 | 38 | 189 | 5.80e-36 | 137 |
| MS.gene86432.t1 | MTR_8g065630 | 40.212 | 189 | 109 | 1 | 47 | 231 | 23 | 211 | 5.91e-38 | 138 |
| MS.gene86432.t1 | MTR_6g024240 | 35.424 | 271 | 116 | 5 | 219 | 487 | 39 | 252 | 1.06e-36 | 136 |
| MS.gene86432.t1 | MTR_8g065650 | 49.020 | 153 | 74 | 1 | 79 | 227 | 55 | 207 | 2.02e-36 | 142 |
| MS.gene86432.t1 | MTR_0658s0030 | 43.636 | 110 | 61 | 1 | 367 | 476 | 1 | 109 | 4.80e-21 | 89.0 |
| MS.gene86432.t1 | MTR_3g072105 | 40.217 | 92 | 54 | 1 | 71 | 162 | 19 | 109 | 6.37e-17 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86432.t1 | AT1G80510 | 71.779 | 489 | 129 | 3 | 6 | 487 | 2 | 488 | 0.0 | 677 |
| MS.gene86432.t1 | AT3G30390 | 45.107 | 419 | 223 | 3 | 73 | 487 | 41 | 456 | 5.34e-123 | 367 |
| MS.gene86432.t1 | AT3G30390 | 45.107 | 419 | 223 | 3 | 73 | 487 | 41 | 456 | 5.34e-123 | 367 |
| MS.gene86432.t1 | AT3G30390 | 45.107 | 419 | 223 | 3 | 73 | 487 | 41 | 456 | 5.34e-123 | 367 |
| MS.gene86432.t1 | AT5G38820 | 45.238 | 420 | 221 | 4 | 73 | 486 | 33 | 449 | 5.06e-121 | 362 |
| MS.gene86432.t1 | AT5G38820 | 45.238 | 420 | 221 | 4 | 73 | 486 | 33 | 449 | 5.06e-121 | 362 |
| MS.gene86432.t1 | AT5G38820 | 45.238 | 420 | 221 | 4 | 73 | 486 | 38 | 454 | 5.68e-121 | 362 |
| MS.gene86432.t1 | AT3G56200 | 39.618 | 419 | 246 | 3 | 72 | 486 | 20 | 435 | 4.30e-100 | 308 |
| MS.gene86432.t1 | AT2G40420 | 38.186 | 419 | 250 | 5 | 72 | 485 | 22 | 436 | 5.93e-89 | 279 |
Find 103 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGGTTCGGTTCATCATTT+AGG | 0.146302 | 2.1:-1662549 | MS.gene86432:CDS |
| AATTGTTTATTTGATTATAA+TGG | 0.179616 | 2.1:-1662583 | MS.gene86432:CDS |
| ATTTGACTACTACTATTATT+GGG | 0.217290 | 2.1:-1662833 | MS.gene86432:CDS |
| AATTTGACTACTACTATTAT+TGG | 0.222548 | 2.1:-1662834 | MS.gene86432:CDS |
| CTGTTGGTTCTCATATATAT+TGG | 0.239785 | 2.1:-1661865 | MS.gene86432:CDS |
| AGTTGATGGGGAATGGGGTT+TGG | 0.254515 | 2.1:-1662515 | MS.gene86432:CDS |
| TATTATTGGGGCAGGAATTA+TGG | 0.256792 | 2.1:-1662820 | MS.gene86432:CDS |
| ATTGTTTATTTGATTATAAT+GGG | 0.268720 | 2.1:-1662582 | MS.gene86432:CDS |
| CTGGTTCGGTTCATCATTTA+GGG | 0.274836 | 2.1:-1662548 | MS.gene86432:CDS |
| CCTGCTACCATGAAAGTTCT+TGG | 0.277184 | 2.1:-1662792 | MS.gene86432:CDS |
| CTCTTCCTACTTTCTGATAA+AGG | 0.295674 | 2.1:+1661910 | None:intergenic |
| CTGTCCGGTTACCTATTATT+CGG | 0.296948 | 2.1:-1662111 | MS.gene86432:CDS |
| GCTTGTGATTCTTGTTGTTA+TGG | 0.306594 | 2.1:-1662481 | MS.gene86432:CDS |
| GTTGATGGGGAATGGGGTTT+GGG | 0.307539 | 2.1:-1662514 | MS.gene86432:CDS |
| GATAATTATCCTCTTGTTGT+TGG | 0.311646 | 2.1:-1662900 | MS.gene86432:CDS |
| TTGATCAGTTGATGGGGAAT+GGG | 0.317412 | 2.1:-1662521 | MS.gene86432:CDS |
| TTAAAAGCTGTCCAGATGTT+TGG | 0.318283 | 2.1:+1661829 | None:intergenic |
| CGTAGTGAGAAATGAATAAC+AGG | 0.324473 | 2.1:+1661970 | None:intergenic |
| CAGTATCATCCCCGAATAAT+AGG | 0.328662 | 2.1:+1662100 | None:intergenic |
| ACATATGCATTTGTCATGAT+TGG | 0.339398 | 2.1:+1662252 | None:intergenic |
| TTTGATCAGTTGATGGGGAA+TGG | 0.352760 | 2.1:-1662522 | MS.gene86432:CDS |
| GCTGTGACTGTTAGCATTGT+AGG | 0.358697 | 2.1:-1661679 | MS.gene86432:CDS |
| TGTCCGGTTACCTATTATTC+GGG | 0.362410 | 2.1:-1662110 | MS.gene86432:CDS |
| TGCAATAAGATTAAGTCATC+AGG | 0.366366 | 2.1:-1661752 | MS.gene86432:CDS |
| GTCATGGTTAATGTTGGTAT+TGG | 0.367428 | 2.1:-1661701 | MS.gene86432:CDS |
| GGTACACCAGACCCGTGATT+TGG | 0.370920 | 2.1:+1662870 | None:intergenic |
| AACAACACCAAGAACTTTCA+TGG | 0.378312 | 2.1:+1662785 | None:intergenic |
| ATGTGTAAAGCGTCATCTTA+TGG | 0.399986 | 2.1:-1662687 | MS.gene86432:CDS |
| CCGATATACAACGAGCTTGA+AGG | 0.427017 | 2.1:-1662210 | MS.gene86432:CDS |
| TCTTGGAATCCGGTTTAGTT+CGG | 0.429060 | 2.1:-1662046 | MS.gene86432:CDS |
| GTGGATACTTTGGTATTTGA+GGG | 0.430206 | 2.1:-1661940 | MS.gene86432:CDS |
| TGTCCAGATGTTTGGAATCA+TGG | 0.438941 | 2.1:+1661837 | None:intergenic |
| AGTGGATACTTTGGTATTTG+AGG | 0.440264 | 2.1:-1661941 | MS.gene86432:CDS |
| TGATCAGTTGATGGGGAATG+GGG | 0.440283 | 2.1:-1662520 | MS.gene86432:CDS |
| CCTTCAAGCTCGTTGTATAT+CGG | 0.440630 | 2.1:+1662210 | None:intergenic |
| AAATATGATGAAGAACTAAC+AGG | 0.441010 | 2.1:+1663044 | None:intergenic |
| GGAATGGGGTTTGGGATCAG+AGG | 0.442360 | 2.1:-1662506 | MS.gene86432:CDS |
| TATGCTGCAACGGCGCTGTC+CGG | 0.446100 | 2.1:-1662126 | MS.gene86432:CDS |
| AGTTCAAGGCCGAACTAAAC+CGG | 0.446759 | 2.1:+1662037 | None:intergenic |
| GTACCATGATTCCAAACATC+TGG | 0.451690 | 2.1:-1661840 | MS.gene86432:CDS |
| CCAGACCCGTGATTTGGAAT+AGG | 0.454182 | 2.1:+1662876 | None:intergenic |
| GCAACAACGGCTGTTTCGTT+AGG | 0.456316 | 2.1:-1661796 | MS.gene86432:CDS |
| CTAAAATCAGGAACCATCCT+AGG | 0.459986 | 2.1:+1662312 | None:intergenic |
| CAGGGAAAACAAGTATCAAA+TGG | 0.460714 | 2.1:+1661989 | None:intergenic |
| GTTAGCATTGTAGGAGTTGT+CGG | 0.463076 | 2.1:-1661670 | MS.gene86432:CDS |
| TTGATAAGGATCTTGGAATC+CGG | 0.468353 | 2.1:-1662056 | MS.gene86432:CDS |
| ATGCTATGGGTAGGCCTGCT+AGG | 0.468880 | 2.1:-1662650 | MS.gene86432:CDS |
| GGAAATTAGTGTCGAATTGT+TGG | 0.479421 | 2.1:-1662724 | MS.gene86432:CDS |
| ATACCAAAGTATCCACTGTT+TGG | 0.479637 | 2.1:+1661947 | None:intergenic |
| GAGCTTGACTTCAGCTGCAT+CGG | 0.488598 | 2.1:-1662412 | MS.gene86432:CDS |
| ATCCCCGAATAATAGGTAAC+CGG | 0.498976 | 2.1:+1662107 | None:intergenic |
| GAAAGTAGGAAGAGATCGCT+AGG | 0.504058 | 2.1:-1661901 | MS.gene86432:CDS |
| TGTTTATTTGATTATAATGG+GGG | 0.506452 | 2.1:-1662580 | MS.gene86432:CDS |
| GTTGGTCCTATTCCAAATCA+CGG | 0.506802 | 2.1:-1662882 | MS.gene86432:CDS |
| CCTATTCCAAATCACGGGTC+TGG | 0.511638 | 2.1:-1662876 | MS.gene86432:CDS |
| GACTCGAACGATATAGTTCA+AGG | 0.512418 | 2.1:+1662023 | None:intergenic |
| GAGATTTGAGCCGCGTAGAA+CGG | 0.523045 | 2.1:-1661729 | MS.gene86432:CDS |
| CCAAGAACTTTCATGGTAGC+AGG | 0.523622 | 2.1:+1662792 | None:intergenic |
| AGGGCTGACTGCAATTCTGT+TGG | 0.526397 | 2.1:-1661881 | MS.gene86432:CDS |
| CTTGACTTCAGCTGCATCGG+TGG | 0.528392 | 2.1:-1662409 | MS.gene86432:CDS |
| ACGCCAAACAGTGGATACTT+TGG | 0.531176 | 2.1:-1661950 | MS.gene86432:CDS |
| ATCTCAGATAAAATCCTAGC+AGG | 0.533652 | 2.1:+1662636 | None:intergenic |
| AATCACGGGTCTGGTGTACC+TGG | 0.537363 | 2.1:-1662867 | MS.gene86432:CDS |
| TTGTTTATTTGATTATAATG+GGG | 0.537532 | 2.1:-1662581 | MS.gene86432:CDS |
| ATCTAAGGTTGATGATGATG+AGG | 0.540722 | 2.1:-1662946 | MS.gene86432:CDS |
| CATCATGGTTTATGCTGCAA+CGG | 0.541494 | 2.1:-1662136 | MS.gene86432:CDS |
| AATCTTATTGCAACAAGAGG+TGG | 0.543383 | 2.1:+1661763 | None:intergenic |
| ACTACTACTATTATTGGGGC+AGG | 0.544363 | 2.1:-1662828 | MS.gene86432:CDS |
| TGAGGTTGTTCAACATGCTA+TGG | 0.553920 | 2.1:-1662664 | MS.gene86432:CDS |
| AGATGACGCTTTACACATAA+CGG | 0.555189 | 2.1:+1662692 | None:intergenic |
| TTGGTCCTATTCCAAATCAC+GGG | 0.557232 | 2.1:-1662881 | MS.gene86432:CDS |
| TGTGATTCTTGTTGTTATGG+TGG | 0.559947 | 2.1:-1662478 | MS.gene86432:CDS |
| TTGTAGTGACCCTTCCTACT+CGG | 0.560230 | 2.1:+1662166 | None:intergenic |
| AAGGAAAGATTGATGCTCCT+AGG | 0.564135 | 2.1:-1662329 | MS.gene86432:CDS |
| CACCTCCTTTATCAGAAAGT+AGG | 0.564200 | 2.1:-1661915 | MS.gene86432:CDS |
| AGAAGATGAACCGAGTAGGA+AGG | 0.574177 | 2.1:-1662176 | MS.gene86432:CDS |
| CAAATAAACAATTAAAACAC+CGG | 0.582905 | 2.1:+1662593 | None:intergenic |
| TTTGACTACTACTATTATTG+GGG | 0.583048 | 2.1:-1662832 | MS.gene86432:CDS |
| CTTAATCTTATTGCAACAAG+AGG | 0.584381 | 2.1:+1661760 | None:intergenic |
| AAAGATTGATGCTCCTAGGA+TGG | 0.587388 | 2.1:-1662325 | MS.gene86432:CDS |
| GAGGTTGTTCAACATGCTAT+GGG | 0.595730 | 2.1:-1662663 | MS.gene86432:CDS |
| GAAGATGAACCGAGTAGGAA+GGG | 0.598449 | 2.1:-1662175 | MS.gene86432:CDS |
| GCAATAAGATTAAGTCATCA+GGG | 0.602082 | 2.1:-1661751 | MS.gene86432:CDS |
| GGAATAGGACCAACAACAAG+AGG | 0.604623 | 2.1:+1662891 | None:intergenic |
| TGTCGGCAATGTCTATAGCA+TGG | 0.606367 | 2.1:-1661653 | MS.gene86432:CDS |
| TTGTTCAACATGCTATGGGT+AGG | 0.614131 | 2.1:-1662659 | MS.gene86432:CDS |
| TAAGGTTGATGATGATGAGG+AGG | 0.622414 | 2.1:-1662943 | MS.gene86432:CDS |
| GTCAAATTAAACACAGCACC+AGG | 0.622692 | 2.1:+1662849 | None:intergenic |
| TTTCTCACTACGCCAAACAG+TGG | 0.625897 | 2.1:-1661959 | MS.gene86432:CDS |
| CCTACTCGGTTCATCTTCTG+CGG | 0.628118 | 2.1:+1662180 | None:intergenic |
| TAAGTTCACAGGTGCAACAA+CGG | 0.628689 | 2.1:-1661809 | MS.gene86432:CDS |
| TTCCTACTTTCTGATAAAGG+AGG | 0.633147 | 2.1:+1661913 | None:intergenic |
| TTAGTGTCGAATTGTTGGTG+AGG | 0.634170 | 2.1:-1662719 | MS.gene86432:CDS |
| AAAGTAGGAAGAGATCGCTA+GGG | 0.636934 | 2.1:-1661900 | MS.gene86432:CDS |
| CCGCAGAAGATGAACCGAGT+AGG | 0.645116 | 2.1:-1662180 | MS.gene86432:CDS |
| ATCTTATCAAGCGAACAAAG+TGG | 0.658267 | 2.1:+1662444 | None:intergenic |
| GTCCGGTTACCTATTATTCG+GGG | 0.662834 | 2.1:-1662109 | MS.gene86432:CDS |
| TATACAACGAGCTTGAAGGT+AGG | 0.669040 | 2.1:-1662206 | MS.gene86432:CDS |
| TGGTTCGGTTCATCATTTAG+GGG | 0.676116 | 2.1:-1662547 | MS.gene86432:CDS |
| TTGAACTATATCGTTCGAGT+CGG | 0.681194 | 2.1:-1662021 | MS.gene86432:CDS |
| TAAAGCGTCATCTTATGGTG+AGG | 0.735180 | 2.1:-1662682 | MS.gene86432:CDS |
| ATGACAAAATCCGTTCTACG+CGG | 0.759656 | 2.1:+1661719 | None:intergenic |
| GTAGTGAGAAATGAATAACA+GGG | 0.781956 | 2.1:+1661971 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGTTTATTTGATTATAA+TGG | - | chr2.1:1662136-1662155 | MS.gene86432:CDS | 10.0% |
| !! | ATTGTTTATTTGATTATAAT+GGG | - | chr2.1:1662137-1662156 | MS.gene86432:CDS | 10.0% |
| !! | TTGTTTATTTGATTATAATG+GGG | - | chr2.1:1662138-1662157 | MS.gene86432:CDS | 15.0% |
| !! | AATTTGACTACTACTATTAT+TGG | - | chr2.1:1661885-1661904 | MS.gene86432:CDS | 20.0% |
| !! | ATTTGACTACTACTATTATT+GGG | - | chr2.1:1661886-1661905 | MS.gene86432:CDS | 20.0% |
| !! | CAAATAAACAATTAAAACAC+CGG | + | chr2.1:1662129-1662148 | None:intergenic | 20.0% |
| !! | TGTTTATTTGATTATAATGG+GGG | - | chr2.1:1662139-1662158 | MS.gene86432:CDS | 20.0% |
| !!! | ATTGTCTTGATTATTTTGAT+GGG | - | chr2.1:1661963-1661982 | MS.gene86432:CDS | 20.0% |
| !!! | TGTTTTGACTAATTTTGATA+AGG | - | chr2.1:1662649-1662668 | MS.gene86432:CDS | 20.0% |
| ! | AAATATGATGAAGAACTAAC+AGG | + | chr2.1:1661678-1661697 | None:intergenic | 25.0% |
| ! | TTTGACTACTACTATTATTG+GGG | - | chr2.1:1661887-1661906 | MS.gene86432:CDS | 25.0% |
| !! | CAAAGATTATCTTTTGATGA+GGG | - | chr2.1:1661735-1661754 | MS.gene86432:CDS | 25.0% |
| !! | TCAAAGATTATCTTTTGATG+AGG | - | chr2.1:1661734-1661753 | MS.gene86432:CDS | 25.0% |
| !!! | ACTAATTTTGATAAGGATCT+TGG | - | chr2.1:1662656-1662675 | MS.gene86432:CDS | 25.0% |
| !!! | GATTGTCTTGATTATTTTGA+TGG | - | chr2.1:1661962-1661981 | MS.gene86432:CDS | 25.0% |
| !!! | TGTATTATTTTGAACAATGC+CGG | - | chr2.1:1662107-1662126 | MS.gene86432:CDS | 25.0% |
| !!! | TTGTCTTGATTATTTTGATG+GGG | - | chr2.1:1661964-1661983 | MS.gene86432:CDS | 25.0% |
| ACATATGCATTTGTCATGAT+TGG | + | chr2.1:1662470-1662489 | None:intergenic | 30.0% | |
| CTTAATCTTATTGCAACAAG+AGG | + | chr2.1:1662962-1662981 | None:intergenic | 30.0% | |
| GCAATAAGATTAAGTCATCA+GGG | - | chr2.1:1662968-1662987 | MS.gene86432:CDS | 30.0% | |
| GTAGTGAGAAATGAATAACA+GGG | + | chr2.1:1662751-1662770 | None:intergenic | 30.0% | |
| TGCAATAAGATTAAGTCATC+AGG | - | chr2.1:1662967-1662986 | MS.gene86432:CDS | 30.0% | |
| ! | GATAATTATCCTCTTGTTGT+TGG | - | chr2.1:1661819-1661838 | MS.gene86432:CDS | 30.0% |
| ! | GATTTTGTCATGGTTAATGT+TGG | - | chr2.1:1663012-1663031 | MS.gene86432:CDS | 30.0% |
| !! | CTGTTGGTTCTCATATATAT+TGG | - | chr2.1:1662854-1662873 | MS.gene86432:CDS | 30.0% |
| !! | GATTTTGATGAATCATTCTG+TGG | + | chr2.1:1661711-1661730 | None:intergenic | 30.0% |
| !!! | AAAGTTCTTGGTGTTGTTTT+AGG | - | chr2.1:1661939-1661958 | MS.gene86432:CDS | 30.0% |
| !!! | AAGTTCTTGGTGTTGTTTTA+GGG | - | chr2.1:1661940-1661959 | MS.gene86432:CDS | 30.0% |
| !!! | GCTTTTATTAAGCTTGTTGA+AGG | - | chr2.1:1662371-1662390 | MS.gene86432:CDS | 30.0% |
| !!! | TATTTTGATGGGGATTTTGT+CGG | - | chr2.1:1661974-1661993 | MS.gene86432:CDS | 30.0% |
| AACAACACCAAGAACTTTCA+TGG | + | chr2.1:1661937-1661956 | None:intergenic | 35.0% | |
| AATCTTATTGCAACAAGAGG+TGG | + | chr2.1:1662959-1662978 | None:intergenic | 35.0% | |
| AGATGACGCTTTACACATAA+CGG | + | chr2.1:1662030-1662049 | None:intergenic | 35.0% | |
| AGTGGATACTTTGGTATTTG+AGG | - | chr2.1:1662778-1662797 | MS.gene86432:CDS | 35.0% | |
| ATCTCAGATAAAATCCTAGC+AGG | + | chr2.1:1662086-1662105 | None:intergenic | 35.0% | |
| ATCTTATCAAGCGAACAAAG+TGG | + | chr2.1:1662278-1662297 | None:intergenic | 35.0% | |
| CAGGGAAAACAAGTATCAAA+TGG | + | chr2.1:1662733-1662752 | None:intergenic | 35.0% | |
| CGTAGTGAGAAATGAATAAC+AGG | + | chr2.1:1662752-1662771 | None:intergenic | 35.0% | |
| CTCTTCCTACTTTCTGATAA+AGG | + | chr2.1:1662812-1662831 | None:intergenic | 35.0% | |
| GTCATGGTTAATGTTGGTAT+TGG | - | chr2.1:1663018-1663037 | MS.gene86432:CDS | 35.0% | |
| GTGGATACTTTGGTATTTGA+GGG | - | chr2.1:1662779-1662798 | MS.gene86432:CDS | 35.0% | |
| TATTATTGGGGCAGGAATTA+TGG | - | chr2.1:1661899-1661918 | MS.gene86432:CDS | 35.0% | |
| TTAAAAGCTGTCCAGATGTT+TGG | + | chr2.1:1662893-1662912 | None:intergenic | 35.0% | |
| TTCCTACTTTCTGATAAAGG+AGG | + | chr2.1:1662809-1662828 | None:intergenic | 35.0% | |
| TTGAACTATATCGTTCGAGT+CGG | - | chr2.1:1662698-1662717 | MS.gene86432:CDS | 35.0% | |
| TTGATAAGGATCTTGGAATC+CGG | - | chr2.1:1662663-1662682 | MS.gene86432:CDS | 35.0% | |
| ! | AGATTATCTTTTGATGAGGG+TGG | - | chr2.1:1661738-1661757 | MS.gene86432:CDS | 35.0% |
| ! | ATACCAAAGTATCCACTGTT+TGG | + | chr2.1:1662775-1662794 | None:intergenic | 35.0% |
| ! | ATGTGTAAAGCGTCATCTTA+TGG | - | chr2.1:1662032-1662051 | MS.gene86432:CDS | 35.0% |
| ! | CACTACAATTTTGTGCATCA+TGG | - | chr2.1:1662568-1662587 | MS.gene86432:CDS | 35.0% |
| ! | GGAAATTAGTGTCGAATTGT+TGG | - | chr2.1:1661995-1662014 | MS.gene86432:CDS | 35.0% |
| !! | ATCTAAGGTTGATGATGATG+AGG | - | chr2.1:1661773-1661792 | MS.gene86432:CDS | 35.0% |
| !! | GCTTGTGATTCTTGTTGTTA+TGG | - | chr2.1:1662238-1662257 | MS.gene86432:CDS | 35.0% |
| !! | TGTGATTCTTGTTGTTATGG+TGG | - | chr2.1:1662241-1662260 | MS.gene86432:CDS | 35.0% |
| !!! | TCCTGATTTTAGCTCGAAAA+AGG | - | chr2.1:1662418-1662437 | MS.gene86432:CDS | 35.0% |
| AAAGATTGATGCTCCTAGGA+TGG | - | chr2.1:1662394-1662413 | MS.gene86432:CDS | 40.0% | |
| AAAGTAGGAAGAGATCGCTA+GGG | - | chr2.1:1662819-1662838 | MS.gene86432:CDS | 40.0% | |
| AAGGAAAGATTGATGCTCCT+AGG | - | chr2.1:1662390-1662409 | MS.gene86432:CDS | 40.0% | |
| ACTACTACTATTATTGGGGC+AGG | - | chr2.1:1661891-1661910 | MS.gene86432:CDS | 40.0% | |
| ATCCCCGAATAATAGGTAAC+CGG | + | chr2.1:1662615-1662634 | None:intergenic | 40.0% | |
| ATGACAAAATCCGTTCTACG+CGG | + | chr2.1:1663003-1663022 | None:intergenic | 40.0% | |
| CACCTCCTTTATCAGAAAGT+AGG | - | chr2.1:1662804-1662823 | MS.gene86432:CDS | 40.0% | |
| CAGTATCATCCCCGAATAAT+AGG | + | chr2.1:1662622-1662641 | None:intergenic | 40.0% | |
| CATCATGGTTTATGCTGCAA+CGG | - | chr2.1:1662583-1662602 | MS.gene86432:CDS | 40.0% | |
| CCTTCAAGCTCGTTGTATAT+CGG | + | chr2.1:1662512-1662531 | None:intergenic | 40.0% | |
| CTAAAATCAGGAACCATCCT+AGG | + | chr2.1:1662410-1662429 | None:intergenic | 40.0% | |
| CTGTCCGGTTACCTATTATT+CGG | - | chr2.1:1662608-1662627 | MS.gene86432:CDS | 40.0% | |
| GACTCGAACGATATAGTTCA+AGG | + | chr2.1:1662699-1662718 | None:intergenic | 40.0% | |
| GAGGTTGTTCAACATGCTAT+GGG | - | chr2.1:1662056-1662075 | MS.gene86432:CDS | 40.0% | |
| GTACCATGATTCCAAACATC+TGG | - | chr2.1:1662879-1662898 | MS.gene86432:CDS | 40.0% | |
| GTCAAATTAAACACAGCACC+AGG | + | chr2.1:1661873-1661892 | None:intergenic | 40.0% | |
| GTTAGCATTGTAGGAGTTGT+CGG | - | chr2.1:1663049-1663068 | MS.gene86432:CDS | 40.0% | |
| GTTGGTCCTATTCCAAATCA+CGG | - | chr2.1:1661837-1661856 | MS.gene86432:CDS | 40.0% | |
| TAAGTTCACAGGTGCAACAA+CGG | - | chr2.1:1662910-1662929 | MS.gene86432:CDS | 40.0% | |
| TAGCTCGAAAAAGGCTATCT+TGG | - | chr2.1:1662427-1662446 | MS.gene86432:CDS | 40.0% | |
| TATACAACGAGCTTGAAGGT+AGG | - | chr2.1:1662513-1662532 | MS.gene86432:CDS | 40.0% | |
| TCTTGGAATCCGGTTTAGTT+CGG | - | chr2.1:1662673-1662692 | MS.gene86432:CDS | 40.0% | |
| TGAGGTTGTTCAACATGCTA+TGG | - | chr2.1:1662055-1662074 | MS.gene86432:CDS | 40.0% | |
| TGTCCGGTTACCTATTATTC+GGG | - | chr2.1:1662609-1662628 | MS.gene86432:CDS | 40.0% | |
| TTGGTCCTATTCCAAATCAC+GGG | - | chr2.1:1661838-1661857 | MS.gene86432:CDS | 40.0% | |
| TTGTTCAACATGCTATGGGT+AGG | - | chr2.1:1662060-1662079 | MS.gene86432:CDS | 40.0% | |
| ! | AGGGGTTTTTGATCAGTTGA+TGG | - | chr2.1:1662190-1662209 | MS.gene86432:CDS | 40.0% |
| ! | ATAATGGGGGATGTTATGTC+TGG | - | chr2.1:1662152-1662171 | MS.gene86432:CDS | 40.0% |
| ! | GGGGTTTTTGATCAGTTGAT+GGG | - | chr2.1:1662191-1662210 | MS.gene86432:CDS | 40.0% |
| ! | TAAAGCGTCATCTTATGGTG+AGG | - | chr2.1:1662037-1662056 | MS.gene86432:CDS | 40.0% |
| ! | TATCTTTTGATGAGGGTGGT+GGG | - | chr2.1:1661742-1661761 | MS.gene86432:CDS | 40.0% |
| ! | TGTCCAGATGTTTGGAATCA+TGG | + | chr2.1:1662885-1662904 | None:intergenic | 40.0% |
| ! | TTAGTGTCGAATTGTTGGTG+AGG | - | chr2.1:1662000-1662019 | MS.gene86432:CDS | 40.0% |
| ! | TTATCTTTTGATGAGGGTGG+TGG | - | chr2.1:1661741-1661760 | MS.gene86432:CDS | 40.0% |
| !! | CTGGTTCGGTTCATCATTTA+GGG | - | chr2.1:1662171-1662190 | MS.gene86432:CDS | 40.0% |
| !! | GGGTTTTTGATCAGTTGATG+GGG | - | chr2.1:1662192-1662211 | MS.gene86432:CDS | 40.0% |
| !! | TAAGGTTGATGATGATGAGG+AGG | - | chr2.1:1661776-1661795 | MS.gene86432:CDS | 40.0% |
| !! | TCTGGTTCGGTTCATCATTT+AGG | - | chr2.1:1662170-1662189 | MS.gene86432:CDS | 40.0% |
| !! | TGGTTCGGTTCATCATTTAG+GGG | - | chr2.1:1662172-1662191 | MS.gene86432:CDS | 40.0% |
| !! | TTGATCAGTTGATGGGGAAT+GGG | - | chr2.1:1662198-1662217 | MS.gene86432:CDS | 40.0% |
| !! | TTTGATCAGTTGATGGGGAA+TGG | - | chr2.1:1662197-1662216 | MS.gene86432:CDS | 40.0% |
| !!! | GCCTTTTTCGAGCTAAAATC+AGG | + | chr2.1:1662422-1662441 | None:intergenic | 40.0% |
| !!! | TGGACAGCTTTTAAGTTCAC+AGG | - | chr2.1:1662899-1662918 | MS.gene86432:CDS | 40.0% |
| !!! | TGGTGGGTTTTTAGGATCTA+AGG | - | chr2.1:1661758-1661777 | MS.gene86432:CDS | 40.0% |
| ACGCCAAACAGTGGATACTT+TGG | - | chr2.1:1662769-1662788 | MS.gene86432:CDS | 45.0% | |
| AGAAGATGAACCGAGTAGGA+AGG | - | chr2.1:1662543-1662562 | MS.gene86432:CDS | 45.0% | |
| AGTTCAAGGCCGAACTAAAC+CGG | + | chr2.1:1662685-1662704 | None:intergenic | 45.0% | |
| CCAAGAACTTTCATGGTAGC+AGG | + | chr2.1:1661930-1661949 | None:intergenic | 45.0% | |
| CCGATATACAACGAGCTTGA+AGG | - | chr2.1:1662509-1662528 | MS.gene86432:CDS | 45.0% | |
| CCTGCTACCATGAAAGTTCT+TGG | - | chr2.1:1661927-1661946 | MS.gene86432:CDS | 45.0% | |
| GAAAGTAGGAAGAGATCGCT+AGG | - | chr2.1:1662818-1662837 | MS.gene86432:CDS | 45.0% | |
| GAAGATGAACCGAGTAGGAA+GGG | - | chr2.1:1662544-1662563 | MS.gene86432:CDS | 45.0% | |
| GCTGTGACTGTTAGCATTGT+AGG | - | chr2.1:1663040-1663059 | MS.gene86432:CDS | 45.0% | |
| GGAATAGGACCAACAACAAG+AGG | + | chr2.1:1661831-1661850 | None:intergenic | 45.0% | |
| GTCCGGTTACCTATTATTCG+GGG | - | chr2.1:1662610-1662629 | MS.gene86432:CDS | 45.0% | |
| TGTCGGCAATGTCTATAGCA+TGG | - | chr2.1:1663066-1663085 | MS.gene86432:CDS | 45.0% | |
| TTGTAGTGACCCTTCCTACT+CGG | + | chr2.1:1662556-1662575 | None:intergenic | 45.0% | |
| TTTCTCACTACGCCAAACAG+TGG | - | chr2.1:1662760-1662779 | MS.gene86432:CDS | 45.0% | |
| !! | GCGTAGAACGGATTTTGTCA+TGG | - | chr2.1:1663002-1663021 | MS.gene86432:CDS | 45.0% |
| !! | TGATCAGTTGATGGGGAATG+GGG | - | chr2.1:1662199-1662218 | MS.gene86432:CDS | 45.0% |
| AGGGCTGACTGCAATTCTGT+TGG | - | chr2.1:1662838-1662857 | MS.gene86432:CDS | 50.0% | |
| CCTACTCGGTTCATCTTCTG+CGG | + | chr2.1:1662542-1662561 | None:intergenic | 50.0% | |
| CCTATTCCAAATCACGGGTC+TGG | - | chr2.1:1661843-1661862 | MS.gene86432:CDS | 50.0% | |
| GAGATTTGAGCCGCGTAGAA+CGG | - | chr2.1:1662990-1663009 | MS.gene86432:CDS | 50.0% | |
| GAGCTTGACTTCAGCTGCAT+CGG | - | chr2.1:1662307-1662326 | MS.gene86432:CDS | 50.0% | |
| GGGGGATGTTATGTCTGGTT+CGG | - | chr2.1:1662157-1662176 | MS.gene86432:CDS | 50.0% | |
| ! | CCAGACCCGTGATTTGGAAT+AGG | + | chr2.1:1661846-1661865 | None:intergenic | 50.0% |
| ! | GCAACAACGGCTGTTTCGTT+AGG | - | chr2.1:1662923-1662942 | MS.gene86432:CDS | 50.0% |
| ! | GTTGATGGGGAATGGGGTTT+GGG | - | chr2.1:1662205-1662224 | MS.gene86432:CDS | 50.0% |
| !! | AGTTGATGGGGAATGGGGTT+TGG | - | chr2.1:1662204-1662223 | MS.gene86432:CDS | 50.0% |
| !!! | GATGAGGGTGGTGGGTTTTT+AGG | - | chr2.1:1661750-1661769 | MS.gene86432:CDS | 50.0% |
| AATCACGGGTCTGGTGTACC+TGG | - | chr2.1:1661852-1661871 | MS.gene86432:CDS | 55.0% | |
| ATGCTATGGGTAGGCCTGCT+AGG | - | chr2.1:1662069-1662088 | MS.gene86432:CDS | 55.0% | |
| CCGCAGAAGATGAACCGAGT+AGG | - | chr2.1:1662539-1662558 | MS.gene86432:CDS | 55.0% | |
| CTTGACTTCAGCTGCATCGG+TGG | - | chr2.1:1662310-1662329 | MS.gene86432:CDS | 55.0% | |
| GGTACACCAGACCCGTGATT+TGG | + | chr2.1:1661852-1661871 | None:intergenic | 55.0% | |
| ! | GGAATGGGGTTTGGGATCAG+AGG | - | chr2.1:1662213-1662232 | MS.gene86432:CDS | 55.0% |
| TATGCTGCAACGGCGCTGTC+CGG | - | chr2.1:1662593-1662612 | MS.gene86432:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 1661639 | 1663102 | 1661639 | ID=MS.gene86432 |
| chr2.1 | mRNA | 1661639 | 1663102 | 1661639 | ID=MS.gene86432.t1;Parent=MS.gene86432 |
| chr2.1 | exon | 1661639 | 1663102 | 1661639 | ID=MS.gene86432.t1.exon1;Parent=MS.gene86432.t1 |
| chr2.1 | CDS | 1661639 | 1663102 | 1661639 | ID=cds.MS.gene86432.t1;Parent=MS.gene86432.t1 |
| Gene Sequence |
| Protein sequence |
