Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89666.t1 | XP_013449116.1 | 92.6 | 95 | 7 | 0 | 6 | 100 | 36 | 130 | 3.70E-44 | 187.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89666.t1 | Q9M390 | 75.3 | 89 | 22 | 0 | 6 | 94 | 36 | 124 | 7.9e-35 | 147.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89666.t1 | A0A072U1U2 | 92.6 | 95 | 7 | 0 | 6 | 100 | 36 | 130 | 2.7e-44 | 187.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049968 | MS.gene89666 | 0.802692 | 4.97E-49 | -1.69E-46 |
| MS.gene051613 | MS.gene89666 | 0.805804 | 1.12E-49 | -1.69E-46 |
| MS.gene052447 | MS.gene89666 | 0.87815 | 3.54E-69 | -1.69E-46 |
| MS.gene05329 | MS.gene89666 | 0.821712 | 3.49E-53 | -1.69E-46 |
| MS.gene05415 | MS.gene89666 | 0.809861 | 1.53E-50 | -1.69E-46 |
| MS.gene05531 | MS.gene89666 | 0.803527 | 3.34E-49 | -1.69E-46 |
| MS.gene055952 | MS.gene89666 | 0.836056 | 1.17E-56 | -1.69E-46 |
| MS.gene056272 | MS.gene89666 | 0.826039 | 3.38E-54 | -1.69E-46 |
| MS.gene058294 | MS.gene89666 | 0.806888 | 6.61E-50 | -1.69E-46 |
| MS.gene059458 | MS.gene89666 | 0.820726 | 5.89E-53 | -1.69E-46 |
| MS.gene060634 | MS.gene89666 | -0.805585 | 1.24E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89666.t1 | MTR_7g067010 | 92.632 | 95 | 7 | 0 | 6 | 100 | 36 | 130 | 4.03e-58 | 187 |
| MS.gene89666.t1 | MTR_4g015080 | 80.851 | 94 | 18 | 0 | 6 | 99 | 46 | 139 | 5.84e-48 | 160 |
| MS.gene89666.t1 | MTR_3g462710 | 68.085 | 94 | 30 | 0 | 6 | 99 | 36 | 129 | 1.14e-42 | 146 |
| MS.gene89666.t1 | MTR_1g041835 | 55.172 | 87 | 39 | 0 | 8 | 94 | 41 | 127 | 4.28e-29 | 109 |
| MS.gene89666.t1 | MTR_7g098200 | 55.056 | 89 | 40 | 0 | 6 | 94 | 41 | 129 | 6.17e-29 | 108 |
| MS.gene89666.t1 | MTR_7g098200 | 55.056 | 89 | 40 | 0 | 6 | 94 | 41 | 129 | 6.23e-29 | 108 |
| MS.gene89666.t1 | MTR_3g072300 | 48.421 | 95 | 49 | 0 | 6 | 100 | 36 | 130 | 7.46e-29 | 108 |
| MS.gene89666.t1 | MTR_1g042310 | 54.762 | 84 | 38 | 0 | 11 | 94 | 43 | 126 | 4.51e-28 | 106 |
| MS.gene89666.t1 | MTR_1g042310 | 54.762 | 84 | 38 | 0 | 11 | 94 | 6 | 89 | 4.95e-28 | 106 |
| MS.gene89666.t1 | MTR_1g041815 | 54.023 | 87 | 40 | 0 | 8 | 94 | 41 | 127 | 1.65e-27 | 104 |
| MS.gene89666.t1 | MTR_7g098180 | 51.042 | 96 | 46 | 1 | 6 | 100 | 43 | 138 | 6.04e-27 | 103 |
| MS.gene89666.t1 | MTR_7g098230 | 51.685 | 89 | 43 | 0 | 6 | 94 | 38 | 126 | 1.34e-26 | 102 |
| MS.gene89666.t1 | MTR_1g042310 | 53.659 | 82 | 38 | 0 | 13 | 94 | 1 | 82 | 1.36e-26 | 102 |
| MS.gene89666.t1 | MTR_1g041875 | 51.190 | 84 | 41 | 0 | 11 | 94 | 46 | 129 | 4.55e-25 | 97.8 |
| MS.gene89666.t1 | MTR_1g041885 | 52.439 | 82 | 39 | 0 | 13 | 94 | 1 | 82 | 1.51e-24 | 96.3 |
| MS.gene89666.t1 | MTR_7g098220 | 47.191 | 89 | 47 | 0 | 6 | 94 | 42 | 130 | 2.29e-24 | 95.9 |
| MS.gene89666.t1 | MTR_7g098090 | 47.191 | 89 | 47 | 0 | 6 | 94 | 45 | 133 | 2.94e-24 | 95.5 |
| MS.gene89666.t1 | MTR_1g075440 | 48.276 | 87 | 45 | 0 | 8 | 94 | 42 | 128 | 3.94e-24 | 95.1 |
| MS.gene89666.t1 | MTR_7g098150 | 47.191 | 89 | 47 | 0 | 6 | 94 | 45 | 133 | 4.74e-24 | 94.7 |
| MS.gene89666.t1 | MTR_7g098220 | 47.619 | 84 | 44 | 0 | 11 | 94 | 3 | 86 | 1.78e-23 | 93.2 |
| MS.gene89666.t1 | MTR_7g098160 | 44.944 | 89 | 49 | 0 | 6 | 94 | 45 | 133 | 5.40e-23 | 92.0 |
| MS.gene89666.t1 | MTR_3g112450 | 45.455 | 88 | 48 | 0 | 7 | 94 | 36 | 123 | 3.56e-22 | 89.7 |
| MS.gene89666.t1 | MTR_4g033375 | 48.276 | 87 | 45 | 0 | 6 | 92 | 44 | 130 | 3.71e-22 | 89.4 |
| MS.gene89666.t1 | MTR_7g065080 | 45.556 | 90 | 48 | 1 | 8 | 97 | 45 | 133 | 3.79e-22 | 89.7 |
| MS.gene89666.t1 | MTR_8g038880 | 48.780 | 82 | 42 | 0 | 8 | 89 | 34 | 115 | 4.91e-22 | 89.4 |
| MS.gene89666.t1 | MTR_4g019580 | 49.425 | 87 | 44 | 0 | 8 | 94 | 50 | 136 | 6.51e-22 | 89.0 |
| MS.gene89666.t1 | MTR_7g098040 | 45.977 | 87 | 47 | 0 | 8 | 94 | 48 | 134 | 1.64e-21 | 87.8 |
| MS.gene89666.t1 | MTR_4g033395 | 48.276 | 87 | 45 | 0 | 6 | 92 | 44 | 130 | 1.83e-21 | 87.4 |
| MS.gene89666.t1 | MTR_4g101380 | 47.191 | 89 | 47 | 0 | 6 | 94 | 39 | 127 | 2.92e-21 | 87.0 |
| MS.gene89666.t1 | MTR_3g112460 | 46.591 | 88 | 47 | 0 | 7 | 94 | 36 | 123 | 1.02e-20 | 85.5 |
| MS.gene89666.t1 | MTR_3g112470 | 47.727 | 88 | 46 | 0 | 7 | 94 | 36 | 123 | 2.09e-20 | 84.7 |
| MS.gene89666.t1 | MTR_7g088825 | 39.326 | 89 | 54 | 0 | 6 | 94 | 34 | 122 | 2.54e-20 | 84.3 |
| MS.gene89666.t1 | MTR_3g014790 | 49.383 | 81 | 41 | 0 | 8 | 88 | 31 | 111 | 3.04e-20 | 84.0 |
| MS.gene89666.t1 | MTR_5g012290 | 48.315 | 89 | 46 | 0 | 6 | 94 | 39 | 127 | 3.77e-20 | 84.0 |
| MS.gene89666.t1 | MTR_7g088820 | 39.326 | 89 | 54 | 0 | 6 | 94 | 37 | 125 | 7.90e-20 | 82.8 |
| MS.gene89666.t1 | MTR_7g088790 | 40.449 | 89 | 53 | 0 | 6 | 94 | 41 | 129 | 9.09e-20 | 82.8 |
| MS.gene89666.t1 | MTR_8g469470 | 43.333 | 90 | 51 | 0 | 6 | 95 | 44 | 133 | 9.13e-20 | 82.8 |
| MS.gene89666.t1 | MTR_5g055000 | 41.053 | 95 | 55 | 1 | 6 | 99 | 30 | 124 | 1.57e-19 | 82.0 |
| MS.gene89666.t1 | MTR_3g069500 | 41.111 | 90 | 52 | 1 | 8 | 97 | 49 | 137 | 2.13e-19 | 81.6 |
| MS.gene89666.t1 | MTR_7g010820 | 47.191 | 89 | 47 | 0 | 7 | 95 | 39 | 127 | 2.54e-19 | 81.6 |
| MS.gene89666.t1 | MTR_5g014150 | 47.312 | 93 | 49 | 0 | 7 | 99 | 57 | 149 | 3.79e-19 | 80.9 |
| MS.gene89666.t1 | MTR_3g005010 | 53.623 | 69 | 32 | 0 | 8 | 76 | 44 | 112 | 8.73e-19 | 80.1 |
| MS.gene89666.t1 | MTR_3g069420 | 40.449 | 89 | 52 | 1 | 8 | 96 | 48 | 135 | 9.66e-18 | 77.0 |
| MS.gene89666.t1 | MTR_4g098800 | 44.086 | 93 | 52 | 0 | 7 | 99 | 114 | 206 | 1.06e-17 | 77.0 |
| MS.gene89666.t1 | MTR_4g098800 | 44.086 | 93 | 52 | 0 | 7 | 99 | 49 | 141 | 1.09e-17 | 77.0 |
| MS.gene89666.t1 | MTR_4g024930 | 42.553 | 94 | 54 | 0 | 7 | 100 | 49 | 142 | 2.83e-17 | 75.5 |
| MS.gene89666.t1 | MTR_1g026740 | 40.217 | 92 | 54 | 1 | 6 | 97 | 29 | 119 | 3.38e-17 | 75.5 |
| MS.gene89666.t1 | MTR_7g006540 | 40.000 | 95 | 54 | 1 | 6 | 97 | 75 | 169 | 3.83e-17 | 75.5 |
| MS.gene89666.t1 | MTR_7g005930 | 41.935 | 93 | 54 | 0 | 7 | 99 | 48 | 140 | 4.07e-17 | 75.1 |
| MS.gene89666.t1 | MTR_5g012270 | 42.697 | 89 | 51 | 0 | 6 | 94 | 41 | 129 | 8.61e-17 | 74.3 |
| MS.gene89666.t1 | MTR_1g009200 | 41.304 | 92 | 50 | 2 | 7 | 96 | 40 | 129 | 1.43e-16 | 73.6 |
| MS.gene89666.t1 | MTR_4g033325 | 49.425 | 87 | 44 | 0 | 6 | 92 | 43 | 129 | 1.55e-16 | 73.6 |
| MS.gene89666.t1 | MTR_5g038060 | 40.217 | 92 | 54 | 1 | 6 | 96 | 43 | 134 | 1.64e-16 | 73.6 |
| MS.gene89666.t1 | MTR_4g033330 | 51.562 | 64 | 31 | 0 | 6 | 69 | 43 | 106 | 1.84e-16 | 73.2 |
| MS.gene89666.t1 | MTR_4g033310 | 48.276 | 87 | 45 | 0 | 6 | 92 | 43 | 129 | 2.53e-16 | 72.8 |
| MS.gene89666.t1 | MTR_4g033315 | 48.276 | 87 | 45 | 0 | 6 | 92 | 43 | 129 | 2.76e-16 | 72.8 |
| MS.gene89666.t1 | MTR_4g033310 | 48.276 | 87 | 45 | 0 | 6 | 92 | 43 | 129 | 2.76e-16 | 72.8 |
| MS.gene89666.t1 | MTR_1g116930 | 40.860 | 93 | 55 | 0 | 7 | 99 | 36 | 128 | 3.08e-16 | 72.8 |
| MS.gene89666.t1 | MTR_5g038190 | 38.889 | 90 | 55 | 0 | 6 | 95 | 36 | 125 | 1.45e-15 | 70.9 |
| MS.gene89666.t1 | MTR_0294s0020 | 50.000 | 64 | 32 | 0 | 6 | 69 | 43 | 106 | 2.23e-15 | 70.1 |
| MS.gene89666.t1 | MTR_7g098210 | 41.463 | 82 | 33 | 1 | 13 | 94 | 1 | 67 | 8.51e-15 | 68.6 |
| MS.gene89666.t1 | MTR_8g469480 | 34.831 | 89 | 58 | 0 | 6 | 94 | 50 | 138 | 1.03e-14 | 68.6 |
| MS.gene89666.t1 | MTR_4g107610 | 35.789 | 95 | 60 | 1 | 6 | 99 | 43 | 137 | 1.80e-13 | 64.7 |
| MS.gene89666.t1 | MTR_7g064800 | 34.831 | 89 | 58 | 0 | 6 | 94 | 38 | 126 | 2.36e-13 | 64.7 |
| MS.gene89666.t1 | MTR_1g026750 | 41.304 | 92 | 53 | 1 | 6 | 97 | 30 | 120 | 3.11e-13 | 64.3 |
| MS.gene89666.t1 | MTR_7g013270 | 46.269 | 67 | 36 | 0 | 6 | 72 | 102 | 168 | 4.47e-13 | 63.5 |
| MS.gene89666.t1 | MTR_3g069440 | 40.698 | 86 | 51 | 0 | 8 | 93 | 47 | 132 | 5.77e-13 | 63.5 |
| MS.gene89666.t1 | MTR_4g107510 | 38.202 | 89 | 55 | 0 | 6 | 94 | 48 | 136 | 7.66e-13 | 63.2 |
| MS.gene89666.t1 | MTR_2g101610 | 37.778 | 90 | 56 | 0 | 6 | 95 | 39 | 128 | 8.16e-13 | 63.2 |
| MS.gene89666.t1 | MTR_4g107530 | 35.955 | 89 | 57 | 0 | 6 | 94 | 45 | 133 | 8.70e-13 | 62.8 |
| MS.gene89666.t1 | MTR_7g064780 | 34.783 | 92 | 59 | 1 | 6 | 96 | 38 | 129 | 1.84e-12 | 62.0 |
| MS.gene89666.t1 | MTR_2g101590 | 37.079 | 89 | 56 | 0 | 6 | 94 | 38 | 126 | 2.81e-12 | 61.6 |
| MS.gene89666.t1 | MTR_2g101560 | 35.955 | 89 | 57 | 0 | 6 | 94 | 39 | 127 | 3.41e-12 | 61.2 |
| MS.gene89666.t1 | MTR_4g011280 | 37.079 | 89 | 56 | 0 | 6 | 94 | 44 | 132 | 3.53e-12 | 61.2 |
| MS.gene89666.t1 | MTR_1g026770 | 36.264 | 91 | 57 | 1 | 7 | 97 | 28 | 117 | 1.09e-11 | 59.7 |
| MS.gene89666.t1 | MTR_4g114340 | 42.697 | 89 | 51 | 0 | 6 | 94 | 36 | 124 | 1.49e-11 | 59.3 |
| MS.gene89666.t1 | MTR_2g101650 | 31.183 | 93 | 63 | 1 | 6 | 97 | 36 | 128 | 2.83e-11 | 58.5 |
| MS.gene89666.t1 | MTR_7g088820 | 38.983 | 59 | 36 | 0 | 36 | 94 | 5 | 63 | 2.95e-11 | 58.5 |
| MS.gene89666.t1 | MTR_6g008690 | 42.029 | 69 | 40 | 0 | 11 | 79 | 24 | 92 | 3.59e-11 | 58.2 |
| MS.gene89666.t1 | MTR_4g107580 | 34.043 | 94 | 62 | 0 | 6 | 99 | 36 | 129 | 3.80e-11 | 58.2 |
| MS.gene89666.t1 | MTR_7g065080 | 54.348 | 46 | 20 | 1 | 52 | 97 | 2 | 46 | 6.19e-11 | 57.8 |
| MS.gene89666.t1 | MTR_2g005130 | 34.831 | 89 | 58 | 0 | 6 | 94 | 52 | 140 | 8.94e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89666.t1 | AT3G54140 | 71.579 | 95 | 26 | 1 | 6 | 99 | 36 | 130 | 2.99e-43 | 148 |
| MS.gene89666.t1 | AT3G54140 | 71.579 | 95 | 26 | 1 | 6 | 99 | 36 | 130 | 2.99e-43 | 148 |
| MS.gene89666.t1 | AT5G01180 | 68.085 | 94 | 30 | 0 | 6 | 99 | 37 | 130 | 1.44e-42 | 146 |
| MS.gene89666.t1 | AT5G01180 | 68.085 | 94 | 30 | 0 | 6 | 99 | 37 | 130 | 1.44e-42 | 146 |
| MS.gene89666.t1 | AT5G01180 | 68.085 | 94 | 30 | 0 | 6 | 99 | 37 | 130 | 1.44e-42 | 146 |
| MS.gene89666.t1 | AT2G02040 | 65.263 | 95 | 32 | 1 | 6 | 99 | 53 | 147 | 9.21e-38 | 133 |
| MS.gene89666.t1 | AT2G02020 | 60.417 | 96 | 37 | 1 | 6 | 100 | 54 | 149 | 6.28e-37 | 130 |
| MS.gene89666.t1 | AT2G02020 | 60.417 | 96 | 37 | 1 | 6 | 100 | 54 | 149 | 6.82e-37 | 130 |
| MS.gene89666.t1 | AT1G62200 | 65.169 | 89 | 31 | 0 | 6 | 94 | 64 | 152 | 7.52e-37 | 130 |
| MS.gene89666.t1 | AT1G62200 | 65.169 | 89 | 31 | 0 | 6 | 94 | 64 | 152 | 9.47e-37 | 130 |
| MS.gene89666.t1 | AT1G62200 | 65.169 | 89 | 31 | 0 | 6 | 94 | 78 | 166 | 1.04e-36 | 130 |
| MS.gene89666.t1 | AT2G40460 | 45.263 | 95 | 52 | 0 | 6 | 100 | 36 | 130 | 2.26e-28 | 107 |
| MS.gene89666.t1 | AT5G46040 | 52.874 | 87 | 41 | 0 | 8 | 94 | 41 | 127 | 2.32e-26 | 101 |
| MS.gene89666.t1 | AT1G68570 | 46.392 | 97 | 51 | 1 | 4 | 99 | 3 | 99 | 3.06e-24 | 95.5 |
| MS.gene89666.t1 | AT5G46050 | 49.425 | 87 | 44 | 0 | 8 | 94 | 41 | 127 | 1.01e-23 | 94.0 |
| MS.gene89666.t1 | AT1G68570 | 46.809 | 94 | 49 | 1 | 6 | 98 | 35 | 128 | 2.71e-23 | 92.8 |
| MS.gene89666.t1 | AT2G37900 | 50.575 | 87 | 43 | 0 | 8 | 94 | 52 | 138 | 5.15e-23 | 92.0 |
| MS.gene89666.t1 | AT3G53960 | 50.000 | 88 | 44 | 0 | 6 | 93 | 49 | 136 | 2.92e-21 | 87.0 |
| MS.gene89666.t1 | AT1G22540 | 51.765 | 85 | 41 | 0 | 6 | 90 | 42 | 126 | 9.12e-20 | 82.8 |
| MS.gene89666.t1 | AT1G52190 | 46.237 | 93 | 49 | 1 | 6 | 97 | 33 | 125 | 1.72e-19 | 82.0 |
| MS.gene89666.t1 | AT3G54450 | 46.835 | 79 | 42 | 0 | 8 | 86 | 26 | 104 | 1.87e-19 | 82.0 |
| MS.gene89666.t1 | AT1G12110 | 47.126 | 87 | 46 | 0 | 8 | 94 | 41 | 127 | 4.54e-19 | 80.9 |
| MS.gene89666.t1 | AT4G21680 | 46.067 | 89 | 48 | 0 | 7 | 95 | 41 | 129 | 2.94e-18 | 78.6 |
| MS.gene89666.t1 | AT1G22570 | 53.012 | 83 | 39 | 0 | 6 | 88 | 5 | 87 | 5.50e-18 | 77.8 |
| MS.gene89666.t1 | AT1G22570 | 53.012 | 83 | 39 | 0 | 6 | 88 | 42 | 124 | 5.56e-18 | 77.8 |
| MS.gene89666.t1 | AT5G13400 | 38.889 | 90 | 55 | 0 | 6 | 95 | 76 | 165 | 1.49e-17 | 76.6 |
| MS.gene89666.t1 | AT1G72120 | 47.561 | 82 | 43 | 0 | 6 | 87 | 41 | 122 | 1.51e-17 | 76.6 |
| MS.gene89666.t1 | AT5G19640 | 43.011 | 93 | 53 | 0 | 7 | 99 | 72 | 164 | 2.56e-17 | 75.9 |
| MS.gene89666.t1 | AT1G72125 | 50.000 | 82 | 41 | 0 | 6 | 87 | 41 | 122 | 3.71e-17 | 75.5 |
| MS.gene89666.t1 | AT1G69870 | 38.710 | 93 | 56 | 1 | 6 | 97 | 63 | 155 | 8.56e-17 | 74.3 |
| MS.gene89666.t1 | AT5G28470 | 41.111 | 90 | 53 | 0 | 6 | 95 | 29 | 118 | 1.24e-16 | 73.9 |
| MS.gene89666.t1 | AT5G28470 | 41.111 | 90 | 53 | 0 | 6 | 95 | 29 | 118 | 1.26e-16 | 73.9 |
| MS.gene89666.t1 | AT1G22550 | 53.125 | 64 | 30 | 0 | 6 | 69 | 42 | 105 | 1.90e-16 | 73.6 |
| MS.gene89666.t1 | AT1G32450 | 49.315 | 73 | 37 | 0 | 7 | 79 | 50 | 122 | 3.15e-16 | 72.8 |
| MS.gene89666.t1 | AT1G69860 | 33.708 | 89 | 59 | 0 | 6 | 94 | 30 | 118 | 5.23e-16 | 72.0 |
| MS.gene89666.t1 | AT3G01350 | 43.038 | 79 | 45 | 0 | 11 | 89 | 24 | 102 | 2.63e-15 | 70.1 |
| MS.gene89666.t1 | AT1G72130 | 43.478 | 92 | 51 | 1 | 8 | 99 | 39 | 129 | 3.12e-15 | 70.1 |
| MS.gene89666.t1 | AT1G72140 | 38.824 | 85 | 52 | 0 | 8 | 92 | 48 | 132 | 4.90e-15 | 69.3 |
| MS.gene89666.t1 | AT5G14940 | 43.038 | 79 | 45 | 0 | 11 | 89 | 24 | 102 | 6.69e-15 | 68.9 |
| MS.gene89666.t1 | AT3G16180 | 38.889 | 90 | 55 | 0 | 6 | 95 | 35 | 124 | 1.52e-14 | 67.8 |
| MS.gene89666.t1 | AT2G37900 | 53.571 | 56 | 26 | 0 | 39 | 94 | 4 | 59 | 2.63e-14 | 67.4 |
| MS.gene89666.t1 | AT5G11570 | 36.957 | 92 | 55 | 1 | 6 | 97 | 25 | 113 | 9.48e-14 | 65.9 |
| MS.gene89666.t1 | AT1G18880 | 40.000 | 90 | 54 | 0 | 6 | 95 | 31 | 120 | 4.01e-13 | 63.9 |
| MS.gene89666.t1 | AT3G47960 | 37.234 | 94 | 59 | 0 | 6 | 99 | 73 | 166 | 4.32e-13 | 63.9 |
| MS.gene89666.t1 | AT5G62680 | 36.559 | 93 | 59 | 0 | 6 | 98 | 55 | 147 | 1.53e-12 | 62.4 |
| MS.gene89666.t1 | AT1G27080 | 35.632 | 87 | 56 | 0 | 6 | 92 | 26 | 112 | 4.27e-12 | 60.8 |
| MS.gene89666.t1 | AT1G59740 | 32.584 | 89 | 60 | 0 | 6 | 94 | 53 | 141 | 2.86e-11 | 58.5 |
| MS.gene89666.t1 | AT3G25260 | 32.184 | 87 | 59 | 0 | 8 | 94 | 35 | 121 | 5.63e-11 | 57.8 |
Find 20 sgRNAs with CRISPR-Local
Find 40 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAGCTATGCAAACTTATC+AGG | 0.195332 | 8.3:-28104033 | None:intergenic |
| CAAGTATGAATCAGCTAAAA+AGG | 0.290193 | 8.3:+28103612 | None:intergenic |
| ATTCATACTTGGGAAGATAT+TGG | 0.310836 | 8.3:-28103600 | MS.gene89666:CDS |
| TCTCGGGCAACATTTCAATC+AGG | 0.413512 | 8.3:-28103704 | MS.gene89666:CDS |
| ACATTGTCTGCTGCTGCACC+TGG | 0.439445 | 8.3:-28103426 | MS.gene89666:CDS |
| AAAAGTGTCACAACCTGGTC+TGG | 0.443862 | 8.3:-28103664 | MS.gene89666:CDS |
| ACAAACTTGGTGAACTATCT+CGG | 0.472059 | 8.3:-28103721 | MS.gene89666:CDS |
| CTATGGTATGAGTACAAACT+TGG | 0.472958 | 8.3:-28103734 | MS.gene89666:CDS |
| TGCTACATCACACCATTGCT+TGG | 0.485986 | 8.3:-28103637 | MS.gene89666:CDS |
| AAATGAATGCTGTGAAAGAT+TGG | 0.486247 | 8.3:-28103761 | MS.gene89666:CDS |
| TGTGAAAGATTGGCATACTA+TGG | 0.500101 | 8.3:-28103751 | MS.gene89666:CDS |
| CAAACTTGGTGAACTATCTC+GGG | 0.531704 | 8.3:-28103720 | MS.gene89666:CDS |
| TCACATGATGGCTTAAGTCC+AGG | 0.554037 | 8.3:+28103408 | None:intergenic |
| CTGCTAAAAGTGTCACAACC+TGG | 0.555013 | 8.3:-28103669 | MS.gene89666:CDS |
| CTCGGGCAACATTTCAATCA+GGG | 0.579415 | 8.3:-28103703 | MS.gene89666:CDS |
| AAAGCTATGCAAACTTATCA+GGG | 0.581041 | 8.3:-28104032 | None:intergenic |
| CAAACATTACCATCACATGA+TGG | 0.599009 | 8.3:+28103396 | None:intergenic |
| GGACTTAAGCCATCATGTGA+TGG | 0.608140 | 8.3:-28103405 | MS.gene89666:CDS |
| GATGTAGCATGTGCCAGACC+AGG | 0.610218 | 8.3:+28103651 | None:intergenic |
| CTTGGGAAGATATTGGACAA+TGG | 0.655270 | 8.3:-28103593 | MS.gene89666:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | CCAATAAACAATATTCTATG+TGG | + | chr8.3:28103891-28103910 | None:intergenic | 25.0% |
| ! | CCACATAGAATATTGTTTAT+TGG | - | chr8.3:28103888-28103907 | MS.gene89666:intron | 25.0% |
| ! | TCACGATCAATGATATTAAA+AGG | + | chr8.3:28103553-28103572 | None:intergenic | 25.0% |
| !!! | TCAACTTGATGTTTTGAAAA+AGG | + | chr8.3:28103425-28103444 | None:intergenic | 25.0% |
| !!! | TTTTTAGCTGATTCATACTT+GGG | - | chr8.3:28103811-28103830 | MS.gene89666:intron | 25.0% |
| AAATGAATGCTGTGAAAGAT+TGG | - | chr8.3:28103660-28103679 | MS.gene89666:CDS | 30.0% | |
| AATTGTCCCCTATTACATAA+TGG | - | chr8.3:28103466-28103485 | MS.gene89666:intron | 30.0% | |
| AGCCATACCATTATGTAATA+GGG | + | chr8.3:28103476-28103495 | None:intergenic | 30.0% | |
| ATATTAAAAGGAGCAACCTA+AGG | + | chr8.3:28103541-28103560 | None:intergenic | 30.0% | |
| ATTCATACTTGGGAAGATAT+TGG | - | chr8.3:28103821-28103840 | MS.gene89666:intron | 30.0% | |
| CAAGTATGAATCAGCTAAAA+AGG | + | chr8.3:28103812-28103831 | None:intergenic | 30.0% | |
| !! | TCAAAACATCAAGTTGATCA+AGG | - | chr8.3:28103428-28103447 | MS.gene89666:CDS | 30.0% |
| !!! | CTTTTTAGCTGATTCATACT+TGG | - | chr8.3:28103810-28103829 | MS.gene89666:intron | 30.0% |
| !!! | TTTTGAAACATTCTTGTGAC+AGG | - | chr8.3:28103637-28103656 | MS.gene89666:CDS | 30.0% |
| CAAACATTACCATCACATGA+TGG | + | chr8.3:28104028-28104047 | None:intergenic | 35.0% | |
| CAGCCATACCATTATGTAAT+AGG | + | chr8.3:28103477-28103496 | None:intergenic | 35.0% | |
| CTATGGTATGAGTACAAACT+TGG | - | chr8.3:28103687-28103706 | MS.gene89666:CDS | 35.0% | |
| GCCATACCATTATGTAATAG+GGG | + | chr8.3:28103475-28103494 | None:intergenic | 35.0% | |
| TCCCCTATTACATAATGGTA+TGG | - | chr8.3:28103471-28103490 | MS.gene89666:intron | 35.0% | |
| TGTGAAAGATTGGCATACTA+TGG | - | chr8.3:28103670-28103689 | MS.gene89666:CDS | 35.0% | |
| ! | ACAAACTTGGTGAACTATCT+CGG | - | chr8.3:28103700-28103719 | MS.gene89666:CDS | 35.0% |
| !!! | GAATGTTGATTTTCTCTGCA+GGG | - | chr8.3:28103959-28103978 | MS.gene89666:intron | 35.0% |
| CTTGGGAAGATATTGGACAA+TGG | - | chr8.3:28103828-28103847 | MS.gene89666:intron | 40.0% | |
| ! | CAAACTTGGTGAACTATCTC+GGG | - | chr8.3:28103701-28103720 | MS.gene89666:CDS | 40.0% |
| ! | TTGATTTTCTCTGCAGGGAA+TGG | - | chr8.3:28103964-28103983 | MS.gene89666:intron | 40.0% |
| !!! | CGAATGTTGATTTTCTCTGC+AGG | - | chr8.3:28103958-28103977 | MS.gene89666:intron | 40.0% |
| CAACCTAAGGTCTCAACAGA+GGG | + | chr8.3:28103528-28103547 | None:intergenic | 45.0% | |
| CTCGGGCAACATTTCAATCA+GGG | - | chr8.3:28103718-28103737 | MS.gene89666:CDS | 45.0% | |
| GATTCAGCAGCTATCTAGAC+AGG | - | chr8.3:28103586-28103605 | MS.gene89666:CDS | 45.0% | |
| GCTAAAAAGGCTCCAAGCAA+TGG | + | chr8.3:28103799-28103818 | None:intergenic | 45.0% | |
| GGACTTAAGCCATCATGTGA+TGG | - | chr8.3:28104016-28104035 | MS.gene89666:intron | 45.0% | |
| TATCCCTCTGTTGAGACCTT+AGG | - | chr8.3:28103522-28103541 | MS.gene89666:intron | 45.0% | |
| TCACATGATGGCTTAAGTCC+AGG | + | chr8.3:28104016-28104035 | None:intergenic | 45.0% | |
| TCTCGGGCAACATTTCAATC+AGG | - | chr8.3:28103717-28103736 | MS.gene89666:CDS | 45.0% | |
| TGCTACATCACACCATTGCT+TGG | - | chr8.3:28103784-28103803 | MS.gene89666:intron | 45.0% | |
| !! | AAAAGTGTCACAACCTGGTC+TGG | - | chr8.3:28103757-28103776 | MS.gene89666:CDS | 45.0% |
| !! | CTGCTAAAAGTGTCACAACC+TGG | - | chr8.3:28103752-28103771 | MS.gene89666:CDS | 45.0% |
| GCAACCTAAGGTCTCAACAG+AGG | + | chr8.3:28103529-28103548 | None:intergenic | 50.0% | |
| ACATTGTCTGCTGCTGCACC+TGG | - | chr8.3:28103995-28104014 | MS.gene89666:intron | 55.0% | |
| GATGTAGCATGTGCCAGACC+AGG | + | chr8.3:28103773-28103792 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 28103395 | 28104048 | 28103395 | ID=MS.gene89666 |
| chr8.3 | mRNA | 28103395 | 28104048 | 28103395 | ID=MS.gene89666.t1;Parent=MS.gene89666 |
| chr8.3 | exon | 28104033 | 28104048 | 28104033 | ID=MS.gene89666.t1.exon1;Parent=MS.gene89666.t1 |
| chr8.3 | CDS | 28104033 | 28104048 | 28104033 | ID=cds.MS.gene89666.t1;Parent=MS.gene89666.t1 |
| chr8.3 | exon | 28103567 | 28103784 | 28103567 | ID=MS.gene89666.t1.exon2;Parent=MS.gene89666.t1 |
| chr8.3 | CDS | 28103567 | 28103784 | 28103567 | ID=cds.MS.gene89666.t1;Parent=MS.gene89666.t1 |
| chr8.3 | exon | 28103395 | 28103463 | 28103395 | ID=MS.gene89666.t1.exon3;Parent=MS.gene89666.t1 |
| chr8.3 | CDS | 28103395 | 28103463 | 28103395 | ID=cds.MS.gene89666.t1;Parent=MS.gene89666.t1 |
| Gene Sequence |
| Protein sequence |
