AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049968


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049968.t1 MTR_5g066230 57.825 754 111 7 1 565 148 883 0.0 781
MS.gene049968.t1 MTR_5g066240 58.348 581 204 12 7 565 112 676 0.0 574
MS.gene049968.t1 MTR_3g100390 47.500 560 253 11 1 532 359 905 1.61e-145 445
MS.gene049968.t1 MTR_3g100390 47.500 560 253 11 1 532 356 902 2.04e-145 445
MS.gene049968.t1 MTR_5g066530 65.029 346 64 5 164 455 1 343 2.57e-136 410
MS.gene049968.t1 MTR_5g066530 79.924 264 29 3 303 565 411 651 1.78e-126 385
MS.gene049968.t1 MTR_2g009580 59.470 264 106 1 16 279 376 638 1.51e-100 326
MS.gene049968.t1 MTR_2g009580 59.470 264 106 1 16 279 410 672 2.53e-100 326
MS.gene049968.t1 MTR_8g064470 29.721 323 184 12 26 333 297 591 1.91e-33 135
MS.gene049968.t1 MTR_8g064470 34.545 165 87 7 26 185 297 445 8.85e-21 96.3
MS.gene049968.t1 MTR_8g064470 34.545 165 87 7 26 185 297 445 1.01e-20 95.9
MS.gene049968.t1 MTR_2g436660 26.066 211 121 8 37 241 261 442 1.15e-15 80.1
MS.gene049968.t1 MTR_4g119970 28.856 201 108 9 47 241 298 469 9.35e-15 77.4
MS.gene049968.t1 MTR_3g075090 26.214 206 126 6 53 257 91 271 6.77e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049968.t1 AT1G09730 53.403 382 153 6 16 377 373 749 3.60e-116 366
MS.gene049968.t1 AT1G09730 53.403 382 153 6 16 377 405 781 6.19e-116 367
MS.gene049968.t1 AT4G33620 52.045 269 123 3 13 280 281 544 1.26e-85 282
MS.gene049968.t1 AT1G60220 30.651 261 154 8 27 276 332 576 1.73e-32 132
MS.gene049968.t1 AT1G10570 32.197 264 148 9 27 276 186 432 1.05e-31 128
MS.gene049968.t1 AT1G10570 32.197 264 148 9 27 276 317 563 6.75e-31 127
MS.gene049968.t1 AT1G10570 32.197 264 148 9 27 276 316 562 6.76e-31 127
MS.gene049968.t1 AT4G15880 28.125 192 102 8 47 232 298 459 1.05e-18 89.7
MS.gene049968.t1 AT3G06910 27.083 192 105 8 47 232 310 472 5.11e-15 78.2
MS.gene049968.t1 AT4G00690 26.601 203 112 9 37 232 139 311 4.71e-14 73.9

Find 113 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTATTCCCTTGCCAAAA+TGG 0.203242 5.3:+52306268 None:intergenic
CATTTCAACATGTTCGTAAA+TGG 0.204655 5.3:-52307672 MS.gene049968:CDS
CTTTCGAAAGCTGGCTGATA+TGG 0.231272 5.3:-52307731 MS.gene049968:CDS
GACAACTTGGTTGATGTAAA+AGG 0.233555 5.3:+52306652 None:intergenic
ATCTTACAATACTTGTAATA+TGG 0.240983 5.3:-52306238 MS.gene049968:CDS
GAGGCATCGACTTCCCATTT+TGG 0.255826 5.3:-52306282 MS.gene049968:CDS
GGCATAAGCCGCCTCTTCTT+TGG 0.294099 5.3:+52305577 None:intergenic
ACAGCATCTGGATCCCCTTT+TGG 0.297980 5.3:+52308268 None:intergenic
GGCGAAGTGGTTAATATTAC+TGG 0.304112 5.3:-52307476 MS.gene049968:intron
GTGTCATTGATGTATGTATT+TGG 0.314227 5.3:+52308211 None:intergenic
TACTTGTAATATGGTTCTTA+AGG 0.339876 5.3:-52306229 MS.gene049968:CDS
GTCAGTGTCATTTATTCAAC+GGG 0.350712 5.3:-52306305 MS.gene049968:CDS
CACAAACTTGTCTATCCAAA+AGG 0.356318 5.3:-52308283 MS.gene049968:CDS
GCTACCATGTATATTGCATA+TGG 0.361060 5.3:-52307345 MS.gene049968:CDS
TTACTTAGCGTAACAGCATC+TGG 0.392707 5.3:+52308256 None:intergenic
TAGAGTTGGTGTCCCTTGAT+AGG 0.392947 5.3:+52305702 None:intergenic
TAAGCAAGACATACCTCAAC+GGG 0.393152 5.3:+52307099 None:intergenic
TTCTATTCCCTTGCCAAAAT+GGG 0.396025 5.3:+52306269 None:intergenic
TCTATCCAGGGACATCATAA+TGG 0.411647 5.3:-52307320 MS.gene049968:CDS
ACAGTTATTTGTCTGAAGAA+TGG 0.412320 5.3:-52307188 MS.gene049968:intron
ATGATCGCTGTTCAAAAGAT+TGG 0.416602 5.3:+52305842 None:intergenic
CAGAATATATTGACGACAAC+AGG 0.420665 5.3:-52306335 MS.gene049968:CDS
TGCTGGTTATCACCATCGTC+AGG 0.422984 5.3:+52306363 None:intergenic
GAGAGGAAGAATGATACATA+TGG 0.426271 5.3:-52307162 MS.gene049968:CDS
GAAGTTCCCCATGCAGCTCT+TGG 0.426826 5.3:+52306195 None:intergenic
TCATTATCTAGAGCTCTTCC+TGG 0.431562 5.3:-52306698 MS.gene049968:CDS
TGAGTACTGGCAACAAGAAT+TGG 0.437010 5.3:-52305738 MS.gene049968:CDS
ATGATCGCTGGTCAAAAGAT+TGG 0.441762 5.3:+52306034 None:intergenic
ATGATCGCTGGTCAAAAGAT+TGG 0.441762 5.3:+52306097 None:intergenic
ATATCAATGAGAGGATCAAC+TGG 0.457628 5.3:+52305781 None:intergenic
ACTTACAAAGTTGGACAACT+TGG 0.457734 5.3:+52306639 None:intergenic
ACAAACTTGTCTATCCAAAA+GGG 0.462924 5.3:-52308282 MS.gene049968:CDS
ATGATCGCTGGTCAAAAGAT+TGG 0.463716 5.3:+52305971 None:intergenic
TTAATAGTGATTTGTTATCC+TGG 0.465013 5.3:-52307497 MS.gene049968:CDS
GCCATGTTGGCAGACATCAC+TGG 0.466901 5.3:-52307523 MS.gene049968:intron
ATGAAAACCACTTACAAAGT+TGG 0.471176 5.3:+52306630 None:intergenic
ATTGCATATGGATTCTATCC+AGG 0.473057 5.3:-52307333 MS.gene049968:CDS
GTCTTGAACTGTTGAACAAA+TGG 0.477731 5.3:+52305935 None:intergenic
GGATAGACAAGTTTGTGAAA+AGG 0.479008 5.3:+52308289 None:intergenic
GCAGATTTGCCGTCACAAGC+AGG 0.487338 5.3:+52307694 None:intergenic
GTTACTTACTTGAAGTTCAC+GGG 0.490082 5.3:+52307607 None:intergenic
AATTACATGGAACTTGAGCC+AGG 0.490245 5.3:+52306680 None:intergenic
ATAAGCCGCCTCTTCTTTGG+AGG 0.492336 5.3:+52305580 None:intergenic
TATCCACACTTATCCTATCA+AGG 0.495098 5.3:-52305715 MS.gene049968:CDS
CACTCGAATATGATGAGTAC+TGG 0.495135 5.3:-52305751 MS.gene049968:CDS
GATTAGATGATGATGATTGC+TGG 0.495530 5.3:+52306148 None:intergenic
TGGAAGTAGCTTGTTAGTCT+AGG 0.502063 5.3:+52308528 None:intergenic
ACATGATTCAATTGTAGAGT+TGG 0.503868 5.3:+52305688 None:intergenic
ATGATTGCTGGTCAAAAGAT+TGG 0.512316 5.3:+52306160 None:intergenic
GTATTCACTTGTAGTATGGA+TGG 0.513947 5.3:-52308573 None:intergenic
AGTTACTTACTTGAAGTTCA+CGG 0.517194 5.3:+52307606 None:intergenic
GCCTCCTTGGATGGAAGTCA+TGG 0.519885 5.3:-52305557 MS.gene049968:CDS
TCAGACCATTATGATGTCCC+TGG 0.520752 5.3:+52307315 None:intergenic
TATTCACTTGTAGTATGGAT+GGG 0.524733 5.3:-52308572 None:intergenic
GCGGCTTATGCCTCCTTGGA+TGG 0.525367 5.3:-52305566 MS.gene049968:CDS
TAAGATACAAGAGAAGCAAA+AGG 0.525918 5.3:-52307782 MS.gene049968:CDS
CAATATATTCTGAGCAGTGC+TGG 0.526276 5.3:+52306346 None:intergenic
ACAACTTGGTTGATGTAAAA+GGG 0.527584 5.3:+52306653 None:intergenic
AGAGGCGGCTTATGCCTCCT+TGG 0.531027 5.3:-52305570 MS.gene049968:CDS
TCCTTGACAGGTACCACAGC+AGG 0.535734 5.3:-52306752 MS.gene049968:intron
GAAAACCATGGTTCACATGA+AGG 0.536547 5.3:-52306393 MS.gene049968:CDS
ATTGACGACAACAGGATTGG+CGG 0.547322 5.3:-52306327 MS.gene049968:CDS
TTGCATATGGATTCTATCCA+GGG 0.549060 5.3:-52307332 MS.gene049968:CDS
TATATTGACGACAACAGGAT+TGG 0.550467 5.3:-52306330 MS.gene049968:CDS
TTGCCGTCACAAGCAGGGTG+GGG 0.554231 5.3:+52307700 None:intergenic
TGTCTGAAGAATGGAAAGAG+AGG 0.554930 5.3:-52307179 MS.gene049968:CDS
CTAGTTCAAATATTAACTTA+CGG 0.556763 5.3:+52306418 None:intergenic
TAAGTTAATATTTGAACTAG+CGG 0.557329 5.3:-52306415 MS.gene049968:CDS
GTAAAAGGGTTGAAATTACA+TGG 0.557770 5.3:+52306667 None:intergenic
ATGATCGCTGGTCAAAAGAC+TGG 0.559134 5.3:+52305908 None:intergenic
TTTGCCGTCACAAGCAGGGT+GGG 0.560307 5.3:+52307699 None:intergenic
TGTTCGTAAATGGACAAGAA+AGG 0.560937 5.3:-52307662 MS.gene049968:CDS
CAGGAAAACTCATTTGATTG+TGG 0.562524 5.3:-52306733 MS.gene049968:CDS
GGTCAGTGTCATTTATTCAA+CGG 0.563457 5.3:-52306306 MS.gene049968:CDS
ATATTACAAGTATTGTAAGA+TGG 0.575254 5.3:+52306240 None:intergenic
GTCTGAAAGACCTTGTGCAA+AGG 0.583698 5.3:-52307298 MS.gene049968:intron
CAGATTTGCCGTCACAAGCA+GGG 0.584422 5.3:+52307695 None:intergenic
GTAATATTAACCACTTCGCC+AGG 0.586130 5.3:+52307479 None:intergenic
TAGATGATAATAATGATCGC+TGG 0.589251 5.3:+52306022 None:intergenic
TAGATGATAATAATGATCGC+TGG 0.589251 5.3:+52306085 None:intergenic
TACAAGAGAAGCAAAAGGCT+AGG 0.589339 5.3:-52307777 MS.gene049968:CDS
CTCATCATATTCGAGTGTTG+AGG 0.599647 5.3:+52305757 None:intergenic
GCATATTTCAGACAAAGAGC+CGG 0.603949 5.3:-52307381 MS.gene049968:intron
AATCCCCACCCTGCTTGTGA+CGG 0.604535 5.3:-52307703 MS.gene049968:CDS
ATTCACTTGTAGTATGGATG+GGG 0.609495 5.3:-52308571 None:intergenic
ATGAGAGACCTCCAAAGAAG+AGG 0.609720 5.3:-52305588 MS.gene049968:CDS
GATTCCATGACTTCCATCCA+AGG 0.612773 5.3:+52305553 None:intergenic
GCTGGTTATCACCATCGTCA+GGG 0.613048 5.3:+52306364 None:intergenic
CGCTTGAGATAAGCATCTGT+AGG 0.616032 5.3:+52306450 None:intergenic
ATCCACACTTATCCTATCAA+GGG 0.620082 5.3:-52305714 MS.gene049968:CDS
GAATCCATATGCAATATACA+TGG 0.622872 5.3:+52307341 None:intergenic
AAGAGCCGGAAAAGTCACTT+AGG 0.625998 5.3:-52307367 MS.gene049968:CDS
AAAAGCCTTCATGTGAACCA+TGG 0.631459 5.3:+52306388 None:intergenic
ATTTGCCGTCACAAGCAGGG+TGG 0.631641 5.3:+52307698 None:intergenic
TAGATGATGATAATGATCGC+TGG 0.636105 5.3:+52305896 None:intergenic
TGTAGTATGGATGGGGAAGG+CGG 0.640368 5.3:-52308564 None:intergenic
TTTGAACTAGCGGAAAACCA+TGG 0.641911 5.3:-52306405 MS.gene049968:CDS
TGTTGAGGAATATCAATGAG+AGG 0.644393 5.3:+52305772 None:intergenic
CAAACTTGTCTATCCAAAAG+GGG 0.646120 5.3:-52308281 MS.gene049968:CDS
ACTTGTAGTATGGATGGGGA+AGG 0.646130 5.3:-52308567 None:intergenic
TAGATGATGATAATGATCGC+TGG 0.647629 5.3:+52305959 None:intergenic
TTGAGATAAGCATCTGTAGG+TGG 0.651537 5.3:+52306453 None:intergenic
TATTCAAGAATCTTGATGAG+AGG 0.651763 5.3:+52307133 None:intergenic
CTGGTTATCACCATCGTCAG+GGG 0.651767 5.3:+52306365 None:intergenic
AGAGACCTCCAAAGAAGAGG+CGG 0.652837 5.3:-52305585 MS.gene049968:CDS
GATTTGTTATCCTGGCGAAG+TGG 0.654014 5.3:-52307489 MS.gene049968:CDS
GTGTCATTTATTCAACGGGG+AGG 0.663555 5.3:-52306301 MS.gene049968:CDS
GTAAGCAAGACATACCTCAA+CGG 0.670905 5.3:+52307098 None:intergenic
TTTGAACCAAGAGCTGCATG+GGG 0.675315 5.3:-52306201 MS.gene049968:CDS
GTCCCTTGATAGGATAAGTG+TGG 0.675915 5.3:+52305712 None:intergenic
TCCATGACTTCCATCCAAGG+AGG 0.734892 5.3:+52305556 None:intergenic
TCAGTGTCATTTATTCAACG+GGG 0.770393 5.3:-52306304 MS.gene049968:CDS
AAGCAAGACATACCTCAACG+GGG 0.831878 5.3:+52307100 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATGTTATATTATTTCAAT+TGG - chr5.3:52307544-52307563 MS.gene049968:intron 10.0%
!!! TATAAATCCTTTAATATTTT+TGG - chr5.3:52305624-52305643 MS.gene049968:CDS 10.0%
!! AAAAACACCAAAAATATTAA+AGG + chr5.3:52305634-52305653 None:intergenic 15.0%
!! AATATAAACAAACAGTTATA+TGG - chr5.3:52306220-52306239 MS.gene049968:CDS 15.0%
!! ATCTACTGTTAATAAAATAA+AGG + chr5.3:52306075-52306094 None:intergenic 15.0%
!!! AAAGTCTTATTTTATCATTT+TGG + chr5.3:52306167-52306186 None:intergenic 15.0%
!!! AACAATTTTGCAATTAAAAT+AGG + chr5.3:52307171-52307190 None:intergenic 15.0%
!!! ATAACATTAATCTTGATTTT+TGG - chr5.3:52308495-52308514 MS.gene049968:intron 15.0%
!!! TTTTTAAATTACTTTCATCA+CGG - chr5.3:52305649-52305668 MS.gene049968:CDS 15.0%
!! AAAATAAGACTTTCAATATC+AGG - chr5.3:52306174-52306193 MS.gene049968:CDS 20.0%
!! ACATAAAAAATATACAAGTG+TGG + chr5.3:52307530-52307549 None:intergenic 20.0%
!! ACATTATAACTACTGAAAAA+TGG - chr5.3:52306253-52306272 MS.gene049968:CDS 20.0%
!! AGAAAAAACTATTGAAAAAG+TGG + chr5.3:52306358-52306377 None:intergenic 20.0%
!! ATCTTACAATACTTGTAATA+TGG - chr5.3:52307869-52307888 MS.gene049968:intron 20.0%
!! CATTATAACTACTGAAAAAT+GGG - chr5.3:52306254-52306273 MS.gene049968:CDS 20.0%
!! CTAGTTCAAATATTAACTTA+CGG + chr5.3:52307692-52307711 None:intergenic 20.0%
!! GATTATAATTTATAACCACA+TGG - chr5.3:52306127-52306146 MS.gene049968:CDS 20.0%
!! TAAGTTAATATTTGAACTAG+CGG - chr5.3:52307692-52307711 MS.gene049968:CDS 20.0%
!!! ATATTACAAGTATTGTAAGA+TGG + chr5.3:52307870-52307889 None:intergenic 20.0%
!!! CTGTTTAAAAATCTCAATTT+TGG - chr5.3:52306287-52306306 MS.gene049968:CDS 20.0%
! AGAAAAATTCAACATATGTC+AGG + chr5.3:52307614-52307633 None:intergenic 25.0%
! AGCATGTTAATTAAAATCAG+AGG - chr5.3:52307040-52307059 MS.gene049968:intron 25.0%
! TACTTGTAATATGGTTCTTA+AGG - chr5.3:52307878-52307897 MS.gene049968:intron 25.0%
! TATAATTTATAACCACATGG+TGG - chr5.3:52306130-52306149 MS.gene049968:CDS 25.0%
! TGTCATAATAGTTGACAAAA+TGG + chr5.3:52306902-52306921 None:intergenic 25.0%
! TTTCTTATTGCTCAATGAAA+TGG - chr5.3:52307084-52307103 MS.gene049968:intron 25.0%
!! AATATTGTTATTGTGAACCT+TGG - chr5.3:52306011-52306030 MS.gene049968:CDS 25.0%
!! TTCTGATTGGAATTCAATTT+TGG - chr5.3:52306562-52306581 MS.gene049968:intron 25.0%
!!! TATTTTTTTGTGCTTACTCT+TGG + chr5.3:52305602-52305621 None:intergenic 25.0%
!!! TTAATAGTGATTTGTTATCC+TGG - chr5.3:52306610-52306629 MS.gene049968:intron 25.0%
AAAATGCAAACATTGTATGG+TGG - chr5.3:52305756-52305775 MS.gene049968:CDS 30.0%
ACAAACTTGTCTATCCAAAA+GGG - chr5.3:52305825-52305844 MS.gene049968:CDS 30.0%
ACAAAGTATAGGCCAAATAA+TGG + chr5.3:52307222-52307241 None:intergenic 30.0%
ACAGTTATTTGTCTGAAGAA+TGG - chr5.3:52306919-52306938 MS.gene049968:intron 30.0%
ACATGATTCAATTGTAGAGT+TGG + chr5.3:52308422-52308441 None:intergenic 30.0%
AGAGAAGGAAATTTAATGCA+TGG + chr5.3:52306861-52306880 None:intergenic 30.0%
AGTTACTTACTTGAAGTTCA+CGG + chr5.3:52306504-52306523 None:intergenic 30.0%
ATACCTTGTGCATAACATTA+TGG - chr5.3:52305697-52305716 MS.gene049968:CDS 30.0%
ATGAAAACCACTTACAAAGT+TGG + chr5.3:52307480-52307499 None:intergenic 30.0%
CAAAGTATAGGCCAAATAAT+GGG + chr5.3:52307221-52307240 None:intergenic 30.0%
CATTTCAACATGTTCGTAAA+TGG - chr5.3:52306435-52306454 MS.gene049968:CDS 30.0%
CTAGATAATGAAGCAAAAAG+AGG + chr5.3:52307400-52307419 None:intergenic 30.0%
CTGATAAGTTAAAGAAGAGA+AGG + chr5.3:52306876-52306895 None:intergenic 30.0%
GAATCCATATGCAATATACA+TGG + chr5.3:52306769-52306788 None:intergenic 30.0%
GGTATTTAGTGATTTCACAT+CGG + chr5.3:52305682-52305701 None:intergenic 30.0%
GTAAAAGGGTTGAAATTACA+TGG + chr5.3:52307443-52307462 None:intergenic 30.0%
TAAGATACAAGAGAAGCAAA+AGG - chr5.3:52306325-52306344 MS.gene049968:CDS 30.0%
TAGATGATAATAATGATCGC+TGG + chr5.3:52308025-52308044 None:intergenic 30.0%
TATTCAAGAATCTTGATGAG+AGG + chr5.3:52306977-52306996 None:intergenic 30.0%
TCCAAAATGCAAACATTGTA+TGG - chr5.3:52305753-52305772 MS.gene049968:CDS 30.0%
TTCAAAAAGCGACAAAGTAT+AGG + chr5.3:52307233-52307252 None:intergenic 30.0%
! AAAATTGATTCCAAGTCACT+GGG - chr5.3:52307127-52307146 MS.gene049968:CDS 30.0%
! AACTTTGTAAGTGGTTTTCA+TGG - chr5.3:52307479-52307498 MS.gene049968:CDS 30.0%
! ACAACTTGGTTGATGTAAAA+GGG + chr5.3:52307457-52307476 None:intergenic 30.0%
! ACCATACAATGTTTGCATTT+TGG + chr5.3:52305757-52305776 None:intergenic 30.0%
! ATCTGTATTGATGTTCTGAT+TGG - chr5.3:52306549-52306568 MS.gene049968:intron 30.0%
! GTGTCATTGATGTATGTATT+TGG + chr5.3:52305899-52305918 None:intergenic 30.0%
! TTCTACAGAGTTCTCTTTTT+GGG - chr5.3:52305720-52305739 MS.gene049968:CDS 30.0%
!!! TAGTTTTTTCTTTCGAAAGC+TGG - chr5.3:52306367-52306386 MS.gene049968:CDS 30.0%
!!! TGAATTTTTCTAGCTCAATG+TGG - chr5.3:52307623-52307642 MS.gene049968:CDS 30.0%
!!! TGGATTTCAGTTTTATTTGC+TGG - chr5.3:52307104-52307123 MS.gene049968:intron 30.0%
AAAATAGGCAACTTTCGTAG+TGG + chr5.3:52307156-52307175 None:intergenic 35.0%
AAGCAACCATATGAATCACT+AGG + chr5.3:52307579-52307598 None:intergenic 35.0%
AAGTTGTCCAACTTTGTAAG+TGG - chr5.3:52307470-52307489 MS.gene049968:intron 35.0%
ACTTACAAAGTTGGACAACT+TGG + chr5.3:52307471-52307490 None:intergenic 35.0%
AGCAACCATATGAATCACTA+GGG + chr5.3:52307578-52307597 None:intergenic 35.0%
ATATCAATGAGAGGATCAAC+TGG + chr5.3:52308329-52308348 None:intergenic 35.0%
ATCCACACTTATCCTATCAA+GGG - chr5.3:52308393-52308412 MS.gene049968:intron 35.0%
ATGATCGCTGTTCAAAAGAT+TGG + chr5.3:52308268-52308287 None:intergenic 35.0%
ATGATTGCTGGTCAAAAGAT+TGG + chr5.3:52307950-52307969 None:intergenic 35.0%
ATTGCATATGGATTCTATCC+AGG - chr5.3:52306774-52306793 MS.gene049968:intron 35.0%
CAAACTTGTCTATCCAAAAG+GGG - chr5.3:52305826-52305845 MS.gene049968:CDS 35.0%
CAAGTGTGGAACAAACTAAT+TGG + chr5.3:52307516-52307535 None:intergenic 35.0%
CACAAACTTGTCTATCCAAA+AGG - chr5.3:52305824-52305843 MS.gene049968:CDS 35.0%
CAGAATATATTGACGACAAC+AGG - chr5.3:52307772-52307791 MS.gene049968:CDS 35.0%
CAGGAAAACTCATTTGATTG+TGG - chr5.3:52307374-52307393 MS.gene049968:intron 35.0%
CTCAAAAATACCTTTGCACA+AGG + chr5.3:52306822-52306841 None:intergenic 35.0%
GAACCATAATGTTATGCACA+AGG + chr5.3:52305703-52305722 None:intergenic 35.0%
GAGAGGAAGAATGATACATA+TGG - chr5.3:52306945-52306964 MS.gene049968:intron 35.0%
GCTACCATGTATATTGCATA+TGG - chr5.3:52306762-52306781 MS.gene049968:intron 35.0%
GGATAGACAAGTTTGTGAAA+AGG + chr5.3:52305821-52305840 None:intergenic 35.0%
GTCTTGAACTGTTGAACAAA+TGG + chr5.3:52308049-52308068 None:intergenic 35.0%
GTTACTTACTTGAAGTTCAC+GGG + chr5.3:52306503-52306522 None:intergenic 35.0%
TAACTCCCTAGTGATTCATA+TGG - chr5.3:52307570-52307589 MS.gene049968:intron 35.0%
TATATTGACGACAACAGGAT+TGG - chr5.3:52307777-52307796 MS.gene049968:CDS 35.0%
TATCCACACTTATCCTATCA+AGG - chr5.3:52308392-52308411 MS.gene049968:intron 35.0%
TGAATGCAAGTCCCATTATT+TGG - chr5.3:52307207-52307226 MS.gene049968:intron 35.0%
TGTTCGTAAATGGACAAGAA+AGG - chr5.3:52306445-52306464 MS.gene049968:CDS 35.0%
TGTTGAGGAATATCAATGAG+AGG + chr5.3:52308338-52308357 None:intergenic 35.0%
TTCTATTCCCTTGCCAAAAT+GGG + chr5.3:52307841-52307860 None:intergenic 35.0%
TTGCATATGGATTCTATCCA+GGG - chr5.3:52306775-52306794 MS.gene049968:intron 35.0%
TTTCTATTCCCTTGCCAAAA+TGG + chr5.3:52307842-52307861 None:intergenic 35.0%
! ATTTATTTCTCGCCTATCTC+TGG - chr5.3:52307252-52307271 MS.gene049968:intron 35.0%
! GAAAATTGATTCCAAGTCAC+TGG - chr5.3:52307126-52307145 MS.gene049968:CDS 35.0%
! GACAACTTGGTTGATGTAAA+AGG + chr5.3:52307458-52307477 None:intergenic 35.0%
! GATTAGATGATGATGATTGC+TGG + chr5.3:52307962-52307981 None:intergenic 35.0%
! GTTCTACAGAGTTCTCTTTT+TGG - chr5.3:52305719-52305738 MS.gene049968:CDS 35.0%
! TAGATGATGATAATGATCGC+TGG + chr5.3:52308151-52308170 None:intergenic 35.0%
!! GAATTCAATTTTGGCCATGT+TGG - chr5.3:52306571-52306590 MS.gene049968:intron 35.0%
!! GGTCAGTGTCATTTATTCAA+CGG - chr5.3:52307801-52307820 MS.gene049968:intron 35.0%
!! GTCAGTGTCATTTATTCAAC+GGG - chr5.3:52307802-52307821 MS.gene049968:intron 35.0%
!! TCAGTGTCATTTATTCAACG+GGG - chr5.3:52307803-52307822 MS.gene049968:intron 35.0%
!! TCATGTCTGAAACAGTTTTC+AGG - chr5.3:52305793-52305812 MS.gene049968:CDS 35.0%
AAAAGCCTTCATGTGAACCA+TGG + chr5.3:52307722-52307741 None:intergenic 40.0%
AATTACATGGAACTTGAGCC+AGG + chr5.3:52307430-52307449 None:intergenic 40.0%
ACTAATCATCAGCCAGAGAT+AGG + chr5.3:52307267-52307286 None:intergenic 40.0%
ATGATCGCTGGTCAAAAGAT+TGG + chr5.3:52308013-52308032 None:intergenic 40.0%
CAATATATTCTGAGCAGTGC+TGG + chr5.3:52307764-52307783 None:intergenic 40.0%
CACTCGAATATGATGAGTAC+TGG - chr5.3:52308356-52308375 MS.gene049968:intron 40.0%
CATTGTATGGTGGCTAATTC+TGG - chr5.3:52305766-52305785 MS.gene049968:CDS 40.0%
GAAAACCATGGTTCACATGA+AGG - chr5.3:52307714-52307733 MS.gene049968:CDS 40.0%
GAGAAAAGCTGAATGTTCCA+AGG + chr5.3:52306031-52306050 None:intergenic 40.0%
GCATATTTCAGACAAAGAGC+CGG - chr5.3:52306726-52306745 MS.gene049968:CDS 40.0%
GGCGAAGTGGTTAATATTAC+TGG - chr5.3:52306631-52306650 MS.gene049968:intron 40.0%
GTAAGCAAGACATACCTCAA+CGG + chr5.3:52307012-52307031 None:intergenic 40.0%
GTAATATTAACCACTTCGCC+AGG + chr5.3:52306631-52306650 None:intergenic 40.0%
TAAGCAAGACATACCTCAAC+GGG + chr5.3:52307011-52307030 None:intergenic 40.0%
TACAAGAGAAGCAAAAGGCT+AGG - chr5.3:52306330-52306349 MS.gene049968:CDS 40.0%
TCTATCCAGGGACATCATAA+TGG - chr5.3:52306787-52306806 MS.gene049968:intron 40.0%
TGTCTGAAGAATGGAAAGAG+AGG - chr5.3:52306928-52306947 MS.gene049968:intron 40.0%
TTACTTAGCGTAACAGCATC+TGG + chr5.3:52305854-52305873 None:intergenic 40.0%
TTGAGATAAGCATCTGTAGG+TGG + chr5.3:52307657-52307676 None:intergenic 40.0%
TTTGAACTAGCGGAAAACCA+TGG - chr5.3:52307702-52307721 MS.gene049968:CDS 40.0%
! ATTTTGAACCAAGAGCTGCA+TGG - chr5.3:52307904-52307923 MS.gene049968:intron 40.0%
! CTCATCATATTCGAGTGTTG+AGG + chr5.3:52308353-52308372 None:intergenic 40.0%
! TCAAATGAGTTTTCCTGCTG+TGG + chr5.3:52307371-52307390 None:intergenic 40.0%
! TCATTATCTAGAGCTCTTCC+TGG - chr5.3:52307409-52307428 MS.gene049968:intron 40.0%
! TTTTGAACCAAGAGCTGCAT+GGG - chr5.3:52307905-52307924 MS.gene049968:intron 40.0%
!! TGAGTACTGGCAACAAGAAT+TGG - chr5.3:52308369-52308388 MS.gene049968:intron 40.0%
!! TGGAAGTAGCTTGTTAGTCT+AGG + chr5.3:52305582-52305601 None:intergenic 40.0%
!!! GAGTTCTCTTTTTGGGACAT+AGG - chr5.3:52305727-52305746 MS.gene049968:CDS 40.0%
!!! TTTTCTAGCTCAATGTGGAC+TGG - chr5.3:52307628-52307647 MS.gene049968:CDS 40.0%
AAGAGCCGGAAAAGTCACTT+AGG - chr5.3:52306740-52306759 MS.gene049968:CDS 45.0%
AAGCAAGACATACCTCAACG+GGG + chr5.3:52307010-52307029 None:intergenic 45.0%
ATGAGAGACCTCCAAAGAAG+AGG - chr5.3:52308519-52308538 MS.gene049968:intron 45.0%
ATGATCGCTGGTCAAAAGAC+TGG + chr5.3:52308202-52308221 None:intergenic 45.0%
ATTGACGACAACAGGATTGG+CGG - chr5.3:52307780-52307799 MS.gene049968:CDS 45.0%
CGCTTGAGATAAGCATCTGT+AGG + chr5.3:52307660-52307679 None:intergenic 45.0%
CTTTCGAAAGCTGGCTGATA+TGG - chr5.3:52306376-52306395 MS.gene049968:CDS 45.0%
GATTCCATGACTTCCATCCA+AGG + chr5.3:52308557-52308576 None:intergenic 45.0%
GTCCCTTGATAGGATAAGTG+TGG + chr5.3:52308398-52308417 None:intergenic 45.0%
GTCTGAAAGACCTTGTGCAA+AGG - chr5.3:52306809-52306828 MS.gene049968:intron 45.0%
GTTATAAGTGCACCACCATG+TGG + chr5.3:52306145-52306164 None:intergenic 45.0%
TCAGACCATTATGATGTCCC+TGG + chr5.3:52306795-52306814 None:intergenic 45.0%
TGTGACTGAATGTCCTTGAC+AGG - chr5.3:52307343-52307362 MS.gene049968:CDS 45.0%
TTTGAACCAAGAGCTGCATG+GGG - chr5.3:52307906-52307925 MS.gene049968:intron 45.0%
! GGTAGCCTAAGTGACTTTTC+CGG + chr5.3:52306748-52306767 None:intergenic 45.0%
! TATGCATTTTCTCCCCGTTG+AGG - chr5.3:52306995-52307014 MS.gene049968:intron 45.0%
!! ATCGACTTCCCATTTTGGCA+AGG - chr5.3:52307830-52307849 MS.gene049968:intron 45.0%
!! GATTTGTTATCCTGGCGAAG+TGG - chr5.3:52306618-52306637 MS.gene049968:intron 45.0%
!! GTGTCATTTATTCAACGGGG+AGG - chr5.3:52307806-52307825 MS.gene049968:intron 45.0%
!! TAGAGTTGGTGTCCCTTGAT+AGG + chr5.3:52308408-52308427 None:intergenic 45.0%
!! TCGACTTCCCATTTTGGCAA+GGG - chr5.3:52307831-52307850 MS.gene049968:intron 45.0%
AGAGACCTCCAAAGAAGAGG+CGG - chr5.3:52308522-52308541 MS.gene049968:intron 50.0%
ATAAGCCGCCTCTTCTTTGG+AGG + chr5.3:52308530-52308549 None:intergenic 50.0%
CAGATTTGCCGTCACAAGCA+GGG + chr5.3:52306415-52306434 None:intergenic 50.0%
CTGGTTATCACCATCGTCAG+GGG + chr5.3:52307745-52307764 None:intergenic 50.0%
GCTGGTTATCACCATCGTCA+GGG + chr5.3:52307746-52307765 None:intergenic 50.0%
GTAGTGGTTTCCCAGTGACT+TGG + chr5.3:52307140-52307159 None:intergenic 50.0%
TCCAGTGATGTCTGCCAACA+TGG + chr5.3:52306588-52306607 None:intergenic 50.0%
TCCATGACTTCCATCCAAGG+AGG + chr5.3:52308554-52308573 None:intergenic 50.0%
! ACAGCATCTGGATCCCCTTT+TGG + chr5.3:52305842-52305861 None:intergenic 50.0%
! TGCTGGTTATCACCATCGTC+AGG + chr5.3:52307747-52307766 None:intergenic 50.0%
!!! GAGGCATCGACTTCCCATTT+TGG - chr5.3:52307825-52307844 MS.gene049968:intron 50.0%
AATCCCCACCCTGCTTGTGA+CGG - chr5.3:52306404-52306423 MS.gene049968:CDS 55.0%
ATTTGCCGTCACAAGCAGGG+TGG + chr5.3:52306412-52306431 None:intergenic 55.0%
GAAGTTCCCCATGCAGCTCT+TGG + chr5.3:52307915-52307934 None:intergenic 55.0%
GCAGATTTGCCGTCACAAGC+AGG + chr5.3:52306416-52306435 None:intergenic 55.0%
GCCATGTTGGCAGACATCAC+TGG - chr5.3:52306584-52306603 MS.gene049968:intron 55.0%
GCCTCCTTGGATGGAAGTCA+TGG - chr5.3:52308550-52308569 MS.gene049968:CDS 55.0%
GGCATAAGCCGCCTCTTCTT+TGG + chr5.3:52308533-52308552 None:intergenic 55.0%
TCCTGCTGTGGTACCTGTCA+AGG + chr5.3:52307359-52307378 None:intergenic 55.0%
TCCTTGACAGGTACCACAGC+AGG - chr5.3:52307355-52307374 MS.gene049968:CDS 55.0%
TTTGCCGTCACAAGCAGGGT+GGG + chr5.3:52306411-52306430 None:intergenic 55.0%
! GAAGGCTTTTCCCCTGACGA+TGG - chr5.3:52307732-52307751 MS.gene049968:CDS 55.0%
AGAGGCGGCTTATGCCTCCT+TGG - chr5.3:52308537-52308556 MS.gene049968:CDS 60.0%
GCGGCTTATGCCTCCTTGGA+TGG - chr5.3:52308541-52308560 MS.gene049968:CDS 60.0%
TTGCCGTCACAAGCAGGGTG+GGG + chr5.3:52306410-52306429 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 52305549 52308580 52305549 ID=MS.gene049968
chr5.3 mRNA 52305549 52308580 52305549 ID=MS.gene049968.t1;Parent=MS.gene049968
chr5.3 exon 52308525 52308580 52308525 ID=MS.gene049968.t1.exon1;Parent=MS.gene049968.t1
chr5.3 CDS 52308525 52308580 52308525 ID=cds.MS.gene049968.t1;Parent=MS.gene049968.t1
chr5.3 exon 52308190 52308321 52308190 ID=MS.gene049968.t1.exon2;Parent=MS.gene049968.t1
chr5.3 CDS 52308190 52308321 52308190 ID=cds.MS.gene049968.t1;Parent=MS.gene049968.t1
chr5.3 exon 52307616 52307816 52307616 ID=MS.gene049968.t1.exon3;Parent=MS.gene049968.t1
chr5.3 CDS 52307616 52307816 52307616 ID=cds.MS.gene049968.t1;Parent=MS.gene049968.t1
chr5.3 exon 52307477 52307532 52307477 ID=MS.gene049968.t1.exon4;Parent=MS.gene049968.t1
chr5.3 CDS 52307477 52307532 52307477 ID=cds.MS.gene049968.t1;Parent=MS.gene049968.t1
chr5.3 exon 52307299 52307392 52307299 ID=MS.gene049968.t1.exon5;Parent=MS.gene049968.t1
chr5.3 CDS 52307299 52307392 52307299 ID=cds.MS.gene049968.t1;Parent=MS.gene049968.t1
chr5.3 exon 52307113 52307206 52307113 ID=MS.gene049968.t1.exon6;Parent=MS.gene049968.t1
chr5.3 CDS 52307113 52307206 52307113 ID=cds.MS.gene049968.t1;Parent=MS.gene049968.t1
chr5.3 exon 52306645 52306764 52306645 ID=MS.gene049968.t1.exon7;Parent=MS.gene049968.t1
chr5.3 CDS 52306645 52306764 52306645 ID=cds.MS.gene049968.t1;Parent=MS.gene049968.t1
chr5.3 exon 52305549 52306493 52305549 ID=MS.gene049968.t1.exon8;Parent=MS.gene049968.t1
chr5.3 CDS 52305549 52306493 52305549 ID=cds.MS.gene049968.t1;Parent=MS.gene049968.t1
Gene Sequence

>MS.gene049968

ATGGATGGGGAAGGCGGCACAACTTTTTCACCTAGACTAACAAGCTACTTCCAAGAGTAAGCACAAAAAAATATTTATAAATCCTTTAATATTTTTGGTGTTTTTAAATTACTTTCATCACGGTTAGACACCGATGTGAAATCACTAAATACCTTGTGCATAACATTATGGTTCTACAGAGTTCTCTTTTTGGGACATAGGTGTTCCAAAATGCAAACATTGTATGGTGGCTAATTCTGGCATTTCATGTCTGAAACAGTTTTCAGGAGCCTTTTCACAAACTTGTCTATCCAAAAGGGGATCCAGATGCTGTTACGCTAAGTAAGAGAGATGTTGATCAATTACAACCAAATACATACATCAATGACACGATTATCGATTTTTACATTCTGTAAGTTTGTTCATCGCTTCGTTAAGAATGCATTTTTAATAGTTCTATCTTCTTTGCTTGCATTTAGTTCTAATATTGTTATTGTGAACCTTGGAACATTCAGCTTTTCTCTTTTGTTGTCTGATGATGTCTCCTTTATTTTATTAACAGTAGATGCATTCATAAAACTTTATAAATGAACTTTAGAGATTATAATTTATAACCACATGGTGGTGCACTTATAACCAAAATGATAAAATAAGACTTTCAATATCAGGATAATAATGTTAAACATGTAGCAAATATAAACAAACAGTTATATGGACTCTGATATACATTATAACTACTGAAAAATGGGTGTAATGTGACTGTTTAAAAATCTCAATTTTGGCAGATATATGAAGAATAAGATACAAGAGAAGCAAAAGGCTAGGTTCCACTTTTTCAATAGTTTTTTCTTTCGAAAGCTGGCTGATATGGACAAAAATCCCCACCCTGCTTGTGACGGCAAATCTGCATTTCAACATGTTCGTAAATGGACAAGAAAGGTTAATTTATTTGAAAAAGATTTTGTTTTTATGCCCGTGAACTTCAAGTAAGTAACTATCAAACTCTTACTTCTTTGTTTGTATCTGTATTGATGTTCTGATTGGAATTCAATTTTGGCCATGTTGGCAGACATCACTGGAGCTTAATAGTGATTTGTTATCCTGGCGAAGTGGTTAATATTACTGGTGAGTTTTTTTCGCATGTGCTATTCAAATACTTTCTTTTAAACATATTTATTCTCAGATATTATGTTATGATGCATATTTCAGACAAAGAGCCGGAAAAGTCACTTAGGCTACCATGTATATTGCATATGGATTCTATCCAGGGACATCATAATGGTCTGAAAGACCTTGTGCAAAGGTATTTTTGAGCTTCTGAATGACACTTCCATGCATTAAATTTCCTTCTCTTCTTTAACTTATCAGCGTCCATTTTGTCAACTATTATGACAGTTATTTGTCTGAAGAATGGAAAGAGAGGAAGAATGATACATATGGAGAAGACCTCTCATCAAGATTCTTGAATATGCATTTTCTCCCCGTTGAGGTATGTCTTGCTTACATTTTAACAGCATGTTAATTAAAATCAGAGGCAATTATTCTTTTTTTAGACATTTCTTATTGCTCAATGAAATGGATTTCAGTTTTATTTGCTGGAAAATTGATTCCAAGTCACTGGGAAACCACTACGAAAGTTGCCTATTTTAATTGCAAAATTGTTTGAAAATAGCTACTGATGAATGCAAGTCCCATTATTTGGCCTATACTTTGTCGCTTTTTGAATTTATTTCTCGCCTATCTCTGGCTGATGATTAGTTGAGTATCATCGAATAACTTTCTATTTTCTCTATTGACTGTGTTTTACTAATGTTTTGTGACTGAATGTCCTTGACAGGTACCACAGCAGGAAAACTCATTTGATTGTGGCCTCTTTTTGCTTCATTATCTAGAGCTCTTCCTGGCTCAAGTTCCATGTAATTTCAACCCTTTTACATCAACCAAGTTGTCCAACTTTGTAAGTGGTTTTCATGGTCGAATTTTTTCCAATTAGTTTGTTCCACACTTGTATATTTTTTATGTTATATTATTTCAATTGGTAGTAACTCCCTAGTGATTCATATGGTTGCTTATATGAATTTAACCTGACATATGTTGAATTTTTCTAGCTCAATGTGGACTGGTTTCCACCTACAGATGCTTATCTCAAGCGAACACGTATCCGTAAGTTAATATTTGAACTAGCGGAAAACCATGGTTCACATGAAGGCTTTTCCCCTGACGATGGTGATAACCAGCACTGCTCAGAATATATTGACGACAACAGGATTGGCGGTCAGTGTCATTTATTCAACGGGGAGGCATCGACTTCCCATTTTGGCAAGGGAATAGAAATGTTTCCATCTTACAATACTTGTAATATGGTTCTTAAGGAGCATTTTGAACCAAGAGCTGCATGGGGAACTTCACTGAGACATTGCCAATCTTTTGACCAGCAATCATCATCATCTAATCATTTGTTCAACAACAGTTCAAGACATTGCCAATCTTTTGACCAGCGATCATTATTATCATCTAATCATTTGTTCAACAGTTCAAGACATTGCCAATCTTTTGACCAGCGATCATTATTATCATCTAATCATTTGTTCAACAGTTCAAGACATTGCCAATCTTTTGACCAGCGATCATTATCATCATCTAACCATTTGTTCAACAGTTCAAGACATTGCCAGTCTTTTGACCAGCGATCATTATCATCATCTAATCATTTGTTCAACAACAGTTCAAGACATTGCCAATCTTTTGAACAGCGATCATTACTTCATATGAATGATTCTACAGATACTATCAATTTTCCAGTTGATCCTCTCATTGATATTCCTCAACACTCGAATATGATGAGTACTGGCAACAAGAATTGGTATCCACACTTATCCTATCAAGGGACACCAACTCTACAATTGAATCATGTTTCTGATGATGCAGTAGATAACAATGTCATCAATGATGATGTTCAGATTATTGATAACATTAATCTTGATTTTTGGAATGAGAGACCTCCAAAGAAGAGGCGGCTTATGCCTCCTTGGATGGAAGTCATGGAATCCTGA

Protein sequence

>MS.gene049968.t1

MDGEGGTTFSPRLTSYFQDFQEPFHKLVYPKGDPDAVTLSKRDVDQLQPNTYINDTIIDFYILYMKNKIQEKQKARFHFFNSFFFRKLADMDKNPHPACDGKSAFQHVRKWTRKVNLFEKDFVFMPVNFKHHWSLIVICYPGEVVNITDKEPEKSLRLPCILHMDSIQGHHNGLKDLVQSYLSEEWKERKNDTYGEDLSSRFLNMHFLPVEVPQQENSFDCGLFLLHYLELFLAQVPCNFNPFTSTKLSNFLNVDWFPPTDAYLKRTRIRKLIFELAENHGSHEGFSPDDGDNQHCSEYIDDNRIGGQCHLFNGEASTSHFGKGIEMFPSYNTCNMVLKEHFEPRAAWGTSLRHCQSFDQQSSSSNHLFNNSSRHCQSFDQRSLLSSNHLFNSSRHCQSFDQRSLLSSNHLFNSSRHCQSFDQRSLSSSNHLFNSSRHCQSFDQRSLSSSNHLFNNSSRHCQSFEQRSLLHMNDSTDTINFPVDPLIDIPQHSNMMSTGNKNWYPHLSYQGTPTLQLNHVSDDAVDNNVINDDVQIIDNINLDFWNERPPKKRRLMPPWMEVMES