Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene049968.t1 | AES98251.1 | 89.9 | 365 | 37 | 0 | 1 | 365 | 148 | 512 | 9.70E-198 | 699.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene049968.t1 | Q8L7S0 | 55.3 | 347 | 131 | 5 | 16 | 343 | 373 | 714 | 8.8e-107 | 389.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene049968.t1 | G7KBL6 | 89.9 | 365 | 37 | 0 | 1 | 365 | 148 | 512 | 7.0e-198 | 699.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049968 | MS.gene071058 | 0.808592 | 2.87E-50 | -1.69E-46 |
MS.gene049968 | MS.gene24211 | 0.803021 | 4.25E-49 | -1.69E-46 |
MS.gene049968 | MS.gene30073 | 0.806333 | 8.66E-50 | -1.69E-46 |
MS.gene049968 | MS.gene50755 | 0.807139 | 5.85E-50 | -1.69E-46 |
MS.gene049968 | MS.gene62748 | 0.811178 | 7.97E-51 | -1.69E-46 |
MS.gene049968 | MS.gene73540 | 0.801009 | 1.10E-48 | -1.69E-46 |
MS.gene049968 | MS.gene76750 | 0.802535 | 5.36E-49 | -1.69E-46 |
MS.gene049968 | MS.gene88533 | 0.803793 | 2.94E-49 | -1.69E-46 |
MS.gene049968 | MS.gene89666 | 0.802692 | 4.97E-49 | -1.69E-46 |
MS.gene049968 | MS.gene93432 | 0.814869 | 1.24E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene049968.t1 | MTR_5g066230 | 57.825 | 754 | 111 | 7 | 1 | 565 | 148 | 883 | 0.0 | 781 |
MS.gene049968.t1 | MTR_5g066240 | 58.348 | 581 | 204 | 12 | 7 | 565 | 112 | 676 | 0.0 | 574 |
MS.gene049968.t1 | MTR_3g100390 | 47.500 | 560 | 253 | 11 | 1 | 532 | 359 | 905 | 1.61e-145 | 445 |
MS.gene049968.t1 | MTR_3g100390 | 47.500 | 560 | 253 | 11 | 1 | 532 | 356 | 902 | 2.04e-145 | 445 |
MS.gene049968.t1 | MTR_5g066530 | 65.029 | 346 | 64 | 5 | 164 | 455 | 1 | 343 | 2.57e-136 | 410 |
MS.gene049968.t1 | MTR_5g066530 | 79.924 | 264 | 29 | 3 | 303 | 565 | 411 | 651 | 1.78e-126 | 385 |
MS.gene049968.t1 | MTR_2g009580 | 59.470 | 264 | 106 | 1 | 16 | 279 | 376 | 638 | 1.51e-100 | 326 |
MS.gene049968.t1 | MTR_2g009580 | 59.470 | 264 | 106 | 1 | 16 | 279 | 410 | 672 | 2.53e-100 | 326 |
MS.gene049968.t1 | MTR_8g064470 | 29.721 | 323 | 184 | 12 | 26 | 333 | 297 | 591 | 1.91e-33 | 135 |
MS.gene049968.t1 | MTR_8g064470 | 34.545 | 165 | 87 | 7 | 26 | 185 | 297 | 445 | 8.85e-21 | 96.3 |
MS.gene049968.t1 | MTR_8g064470 | 34.545 | 165 | 87 | 7 | 26 | 185 | 297 | 445 | 1.01e-20 | 95.9 |
MS.gene049968.t1 | MTR_2g436660 | 26.066 | 211 | 121 | 8 | 37 | 241 | 261 | 442 | 1.15e-15 | 80.1 |
MS.gene049968.t1 | MTR_4g119970 | 28.856 | 201 | 108 | 9 | 47 | 241 | 298 | 469 | 9.35e-15 | 77.4 |
MS.gene049968.t1 | MTR_3g075090 | 26.214 | 206 | 126 | 6 | 53 | 257 | 91 | 271 | 6.77e-13 | 69.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene049968.t1 | AT1G09730 | 53.403 | 382 | 153 | 6 | 16 | 377 | 373 | 749 | 3.60e-116 | 366 |
MS.gene049968.t1 | AT1G09730 | 53.403 | 382 | 153 | 6 | 16 | 377 | 405 | 781 | 6.19e-116 | 367 |
MS.gene049968.t1 | AT4G33620 | 52.045 | 269 | 123 | 3 | 13 | 280 | 281 | 544 | 1.26e-85 | 282 |
MS.gene049968.t1 | AT1G60220 | 30.651 | 261 | 154 | 8 | 27 | 276 | 332 | 576 | 1.73e-32 | 132 |
MS.gene049968.t1 | AT1G10570 | 32.197 | 264 | 148 | 9 | 27 | 276 | 186 | 432 | 1.05e-31 | 128 |
MS.gene049968.t1 | AT1G10570 | 32.197 | 264 | 148 | 9 | 27 | 276 | 317 | 563 | 6.75e-31 | 127 |
MS.gene049968.t1 | AT1G10570 | 32.197 | 264 | 148 | 9 | 27 | 276 | 316 | 562 | 6.76e-31 | 127 |
MS.gene049968.t1 | AT4G15880 | 28.125 | 192 | 102 | 8 | 47 | 232 | 298 | 459 | 1.05e-18 | 89.7 |
MS.gene049968.t1 | AT3G06910 | 27.083 | 192 | 105 | 8 | 47 | 232 | 310 | 472 | 5.11e-15 | 78.2 |
MS.gene049968.t1 | AT4G00690 | 26.601 | 203 | 112 | 9 | 37 | 232 | 139 | 311 | 4.71e-14 | 73.9 |
Find 113 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCTATTCCCTTGCCAAAA+TGG | 0.203242 | 5.3:+52306268 | None:intergenic |
CATTTCAACATGTTCGTAAA+TGG | 0.204655 | 5.3:-52307672 | MS.gene049968:CDS |
CTTTCGAAAGCTGGCTGATA+TGG | 0.231272 | 5.3:-52307731 | MS.gene049968:CDS |
GACAACTTGGTTGATGTAAA+AGG | 0.233555 | 5.3:+52306652 | None:intergenic |
ATCTTACAATACTTGTAATA+TGG | 0.240983 | 5.3:-52306238 | MS.gene049968:CDS |
GAGGCATCGACTTCCCATTT+TGG | 0.255826 | 5.3:-52306282 | MS.gene049968:CDS |
GGCATAAGCCGCCTCTTCTT+TGG | 0.294099 | 5.3:+52305577 | None:intergenic |
ACAGCATCTGGATCCCCTTT+TGG | 0.297980 | 5.3:+52308268 | None:intergenic |
GGCGAAGTGGTTAATATTAC+TGG | 0.304112 | 5.3:-52307476 | MS.gene049968:intron |
GTGTCATTGATGTATGTATT+TGG | 0.314227 | 5.3:+52308211 | None:intergenic |
TACTTGTAATATGGTTCTTA+AGG | 0.339876 | 5.3:-52306229 | MS.gene049968:CDS |
GTCAGTGTCATTTATTCAAC+GGG | 0.350712 | 5.3:-52306305 | MS.gene049968:CDS |
CACAAACTTGTCTATCCAAA+AGG | 0.356318 | 5.3:-52308283 | MS.gene049968:CDS |
GCTACCATGTATATTGCATA+TGG | 0.361060 | 5.3:-52307345 | MS.gene049968:CDS |
TTACTTAGCGTAACAGCATC+TGG | 0.392707 | 5.3:+52308256 | None:intergenic |
TAGAGTTGGTGTCCCTTGAT+AGG | 0.392947 | 5.3:+52305702 | None:intergenic |
TAAGCAAGACATACCTCAAC+GGG | 0.393152 | 5.3:+52307099 | None:intergenic |
TTCTATTCCCTTGCCAAAAT+GGG | 0.396025 | 5.3:+52306269 | None:intergenic |
TCTATCCAGGGACATCATAA+TGG | 0.411647 | 5.3:-52307320 | MS.gene049968:CDS |
ACAGTTATTTGTCTGAAGAA+TGG | 0.412320 | 5.3:-52307188 | MS.gene049968:intron |
ATGATCGCTGTTCAAAAGAT+TGG | 0.416602 | 5.3:+52305842 | None:intergenic |
CAGAATATATTGACGACAAC+AGG | 0.420665 | 5.3:-52306335 | MS.gene049968:CDS |
TGCTGGTTATCACCATCGTC+AGG | 0.422984 | 5.3:+52306363 | None:intergenic |
GAGAGGAAGAATGATACATA+TGG | 0.426271 | 5.3:-52307162 | MS.gene049968:CDS |
GAAGTTCCCCATGCAGCTCT+TGG | 0.426826 | 5.3:+52306195 | None:intergenic |
TCATTATCTAGAGCTCTTCC+TGG | 0.431562 | 5.3:-52306698 | MS.gene049968:CDS |
TGAGTACTGGCAACAAGAAT+TGG | 0.437010 | 5.3:-52305738 | MS.gene049968:CDS |
ATGATCGCTGGTCAAAAGAT+TGG | 0.441762 | 5.3:+52306034 | None:intergenic |
ATGATCGCTGGTCAAAAGAT+TGG | 0.441762 | 5.3:+52306097 | None:intergenic |
ATATCAATGAGAGGATCAAC+TGG | 0.457628 | 5.3:+52305781 | None:intergenic |
ACTTACAAAGTTGGACAACT+TGG | 0.457734 | 5.3:+52306639 | None:intergenic |
ACAAACTTGTCTATCCAAAA+GGG | 0.462924 | 5.3:-52308282 | MS.gene049968:CDS |
ATGATCGCTGGTCAAAAGAT+TGG | 0.463716 | 5.3:+52305971 | None:intergenic |
TTAATAGTGATTTGTTATCC+TGG | 0.465013 | 5.3:-52307497 | MS.gene049968:CDS |
GCCATGTTGGCAGACATCAC+TGG | 0.466901 | 5.3:-52307523 | MS.gene049968:intron |
ATGAAAACCACTTACAAAGT+TGG | 0.471176 | 5.3:+52306630 | None:intergenic |
ATTGCATATGGATTCTATCC+AGG | 0.473057 | 5.3:-52307333 | MS.gene049968:CDS |
GTCTTGAACTGTTGAACAAA+TGG | 0.477731 | 5.3:+52305935 | None:intergenic |
GGATAGACAAGTTTGTGAAA+AGG | 0.479008 | 5.3:+52308289 | None:intergenic |
GCAGATTTGCCGTCACAAGC+AGG | 0.487338 | 5.3:+52307694 | None:intergenic |
GTTACTTACTTGAAGTTCAC+GGG | 0.490082 | 5.3:+52307607 | None:intergenic |
AATTACATGGAACTTGAGCC+AGG | 0.490245 | 5.3:+52306680 | None:intergenic |
ATAAGCCGCCTCTTCTTTGG+AGG | 0.492336 | 5.3:+52305580 | None:intergenic |
TATCCACACTTATCCTATCA+AGG | 0.495098 | 5.3:-52305715 | MS.gene049968:CDS |
CACTCGAATATGATGAGTAC+TGG | 0.495135 | 5.3:-52305751 | MS.gene049968:CDS |
GATTAGATGATGATGATTGC+TGG | 0.495530 | 5.3:+52306148 | None:intergenic |
TGGAAGTAGCTTGTTAGTCT+AGG | 0.502063 | 5.3:+52308528 | None:intergenic |
ACATGATTCAATTGTAGAGT+TGG | 0.503868 | 5.3:+52305688 | None:intergenic |
ATGATTGCTGGTCAAAAGAT+TGG | 0.512316 | 5.3:+52306160 | None:intergenic |
GTATTCACTTGTAGTATGGA+TGG | 0.513947 | 5.3:-52308573 | None:intergenic |
AGTTACTTACTTGAAGTTCA+CGG | 0.517194 | 5.3:+52307606 | None:intergenic |
GCCTCCTTGGATGGAAGTCA+TGG | 0.519885 | 5.3:-52305557 | MS.gene049968:CDS |
TCAGACCATTATGATGTCCC+TGG | 0.520752 | 5.3:+52307315 | None:intergenic |
TATTCACTTGTAGTATGGAT+GGG | 0.524733 | 5.3:-52308572 | None:intergenic |
GCGGCTTATGCCTCCTTGGA+TGG | 0.525367 | 5.3:-52305566 | MS.gene049968:CDS |
TAAGATACAAGAGAAGCAAA+AGG | 0.525918 | 5.3:-52307782 | MS.gene049968:CDS |
CAATATATTCTGAGCAGTGC+TGG | 0.526276 | 5.3:+52306346 | None:intergenic |
ACAACTTGGTTGATGTAAAA+GGG | 0.527584 | 5.3:+52306653 | None:intergenic |
AGAGGCGGCTTATGCCTCCT+TGG | 0.531027 | 5.3:-52305570 | MS.gene049968:CDS |
TCCTTGACAGGTACCACAGC+AGG | 0.535734 | 5.3:-52306752 | MS.gene049968:intron |
GAAAACCATGGTTCACATGA+AGG | 0.536547 | 5.3:-52306393 | MS.gene049968:CDS |
ATTGACGACAACAGGATTGG+CGG | 0.547322 | 5.3:-52306327 | MS.gene049968:CDS |
TTGCATATGGATTCTATCCA+GGG | 0.549060 | 5.3:-52307332 | MS.gene049968:CDS |
TATATTGACGACAACAGGAT+TGG | 0.550467 | 5.3:-52306330 | MS.gene049968:CDS |
TTGCCGTCACAAGCAGGGTG+GGG | 0.554231 | 5.3:+52307700 | None:intergenic |
TGTCTGAAGAATGGAAAGAG+AGG | 0.554930 | 5.3:-52307179 | MS.gene049968:CDS |
CTAGTTCAAATATTAACTTA+CGG | 0.556763 | 5.3:+52306418 | None:intergenic |
TAAGTTAATATTTGAACTAG+CGG | 0.557329 | 5.3:-52306415 | MS.gene049968:CDS |
GTAAAAGGGTTGAAATTACA+TGG | 0.557770 | 5.3:+52306667 | None:intergenic |
ATGATCGCTGGTCAAAAGAC+TGG | 0.559134 | 5.3:+52305908 | None:intergenic |
TTTGCCGTCACAAGCAGGGT+GGG | 0.560307 | 5.3:+52307699 | None:intergenic |
TGTTCGTAAATGGACAAGAA+AGG | 0.560937 | 5.3:-52307662 | MS.gene049968:CDS |
CAGGAAAACTCATTTGATTG+TGG | 0.562524 | 5.3:-52306733 | MS.gene049968:CDS |
GGTCAGTGTCATTTATTCAA+CGG | 0.563457 | 5.3:-52306306 | MS.gene049968:CDS |
ATATTACAAGTATTGTAAGA+TGG | 0.575254 | 5.3:+52306240 | None:intergenic |
GTCTGAAAGACCTTGTGCAA+AGG | 0.583698 | 5.3:-52307298 | MS.gene049968:intron |
CAGATTTGCCGTCACAAGCA+GGG | 0.584422 | 5.3:+52307695 | None:intergenic |
GTAATATTAACCACTTCGCC+AGG | 0.586130 | 5.3:+52307479 | None:intergenic |
TAGATGATAATAATGATCGC+TGG | 0.589251 | 5.3:+52306022 | None:intergenic |
TAGATGATAATAATGATCGC+TGG | 0.589251 | 5.3:+52306085 | None:intergenic |
TACAAGAGAAGCAAAAGGCT+AGG | 0.589339 | 5.3:-52307777 | MS.gene049968:CDS |
CTCATCATATTCGAGTGTTG+AGG | 0.599647 | 5.3:+52305757 | None:intergenic |
GCATATTTCAGACAAAGAGC+CGG | 0.603949 | 5.3:-52307381 | MS.gene049968:intron |
AATCCCCACCCTGCTTGTGA+CGG | 0.604535 | 5.3:-52307703 | MS.gene049968:CDS |
ATTCACTTGTAGTATGGATG+GGG | 0.609495 | 5.3:-52308571 | None:intergenic |
ATGAGAGACCTCCAAAGAAG+AGG | 0.609720 | 5.3:-52305588 | MS.gene049968:CDS |
GATTCCATGACTTCCATCCA+AGG | 0.612773 | 5.3:+52305553 | None:intergenic |
GCTGGTTATCACCATCGTCA+GGG | 0.613048 | 5.3:+52306364 | None:intergenic |
CGCTTGAGATAAGCATCTGT+AGG | 0.616032 | 5.3:+52306450 | None:intergenic |
ATCCACACTTATCCTATCAA+GGG | 0.620082 | 5.3:-52305714 | MS.gene049968:CDS |
GAATCCATATGCAATATACA+TGG | 0.622872 | 5.3:+52307341 | None:intergenic |
AAGAGCCGGAAAAGTCACTT+AGG | 0.625998 | 5.3:-52307367 | MS.gene049968:CDS |
AAAAGCCTTCATGTGAACCA+TGG | 0.631459 | 5.3:+52306388 | None:intergenic |
ATTTGCCGTCACAAGCAGGG+TGG | 0.631641 | 5.3:+52307698 | None:intergenic |
TAGATGATGATAATGATCGC+TGG | 0.636105 | 5.3:+52305896 | None:intergenic |
TGTAGTATGGATGGGGAAGG+CGG | 0.640368 | 5.3:-52308564 | None:intergenic |
TTTGAACTAGCGGAAAACCA+TGG | 0.641911 | 5.3:-52306405 | MS.gene049968:CDS |
TGTTGAGGAATATCAATGAG+AGG | 0.644393 | 5.3:+52305772 | None:intergenic |
CAAACTTGTCTATCCAAAAG+GGG | 0.646120 | 5.3:-52308281 | MS.gene049968:CDS |
ACTTGTAGTATGGATGGGGA+AGG | 0.646130 | 5.3:-52308567 | None:intergenic |
TAGATGATGATAATGATCGC+TGG | 0.647629 | 5.3:+52305959 | None:intergenic |
TTGAGATAAGCATCTGTAGG+TGG | 0.651537 | 5.3:+52306453 | None:intergenic |
TATTCAAGAATCTTGATGAG+AGG | 0.651763 | 5.3:+52307133 | None:intergenic |
CTGGTTATCACCATCGTCAG+GGG | 0.651767 | 5.3:+52306365 | None:intergenic |
AGAGACCTCCAAAGAAGAGG+CGG | 0.652837 | 5.3:-52305585 | MS.gene049968:CDS |
GATTTGTTATCCTGGCGAAG+TGG | 0.654014 | 5.3:-52307489 | MS.gene049968:CDS |
GTGTCATTTATTCAACGGGG+AGG | 0.663555 | 5.3:-52306301 | MS.gene049968:CDS |
GTAAGCAAGACATACCTCAA+CGG | 0.670905 | 5.3:+52307098 | None:intergenic |
TTTGAACCAAGAGCTGCATG+GGG | 0.675315 | 5.3:-52306201 | MS.gene049968:CDS |
GTCCCTTGATAGGATAAGTG+TGG | 0.675915 | 5.3:+52305712 | None:intergenic |
TCCATGACTTCCATCCAAGG+AGG | 0.734892 | 5.3:+52305556 | None:intergenic |
TCAGTGTCATTTATTCAACG+GGG | 0.770393 | 5.3:-52306304 | MS.gene049968:CDS |
AAGCAAGACATACCTCAACG+GGG | 0.831878 | 5.3:+52307100 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATGTTATATTATTTCAAT+TGG | - | chr5.3:52307544-52307563 | MS.gene049968:intron | 10.0% |
!!! | TATAAATCCTTTAATATTTT+TGG | - | chr5.3:52305624-52305643 | MS.gene049968:CDS | 10.0% |
!! | AAAAACACCAAAAATATTAA+AGG | + | chr5.3:52305634-52305653 | None:intergenic | 15.0% |
!! | AATATAAACAAACAGTTATA+TGG | - | chr5.3:52306220-52306239 | MS.gene049968:CDS | 15.0% |
!! | ATCTACTGTTAATAAAATAA+AGG | + | chr5.3:52306075-52306094 | None:intergenic | 15.0% |
!!! | AAAGTCTTATTTTATCATTT+TGG | + | chr5.3:52306167-52306186 | None:intergenic | 15.0% |
!!! | AACAATTTTGCAATTAAAAT+AGG | + | chr5.3:52307171-52307190 | None:intergenic | 15.0% |
!!! | ATAACATTAATCTTGATTTT+TGG | - | chr5.3:52308495-52308514 | MS.gene049968:intron | 15.0% |
!!! | TTTTTAAATTACTTTCATCA+CGG | - | chr5.3:52305649-52305668 | MS.gene049968:CDS | 15.0% |
!! | AAAATAAGACTTTCAATATC+AGG | - | chr5.3:52306174-52306193 | MS.gene049968:CDS | 20.0% |
!! | ACATAAAAAATATACAAGTG+TGG | + | chr5.3:52307530-52307549 | None:intergenic | 20.0% |
!! | ACATTATAACTACTGAAAAA+TGG | - | chr5.3:52306253-52306272 | MS.gene049968:CDS | 20.0% |
!! | AGAAAAAACTATTGAAAAAG+TGG | + | chr5.3:52306358-52306377 | None:intergenic | 20.0% |
!! | ATCTTACAATACTTGTAATA+TGG | - | chr5.3:52307869-52307888 | MS.gene049968:intron | 20.0% |
!! | CATTATAACTACTGAAAAAT+GGG | - | chr5.3:52306254-52306273 | MS.gene049968:CDS | 20.0% |
!! | CTAGTTCAAATATTAACTTA+CGG | + | chr5.3:52307692-52307711 | None:intergenic | 20.0% |
!! | GATTATAATTTATAACCACA+TGG | - | chr5.3:52306127-52306146 | MS.gene049968:CDS | 20.0% |
!! | TAAGTTAATATTTGAACTAG+CGG | - | chr5.3:52307692-52307711 | MS.gene049968:CDS | 20.0% |
!!! | ATATTACAAGTATTGTAAGA+TGG | + | chr5.3:52307870-52307889 | None:intergenic | 20.0% |
!!! | CTGTTTAAAAATCTCAATTT+TGG | - | chr5.3:52306287-52306306 | MS.gene049968:CDS | 20.0% |
! | AGAAAAATTCAACATATGTC+AGG | + | chr5.3:52307614-52307633 | None:intergenic | 25.0% |
! | AGCATGTTAATTAAAATCAG+AGG | - | chr5.3:52307040-52307059 | MS.gene049968:intron | 25.0% |
! | TACTTGTAATATGGTTCTTA+AGG | - | chr5.3:52307878-52307897 | MS.gene049968:intron | 25.0% |
! | TATAATTTATAACCACATGG+TGG | - | chr5.3:52306130-52306149 | MS.gene049968:CDS | 25.0% |
! | TGTCATAATAGTTGACAAAA+TGG | + | chr5.3:52306902-52306921 | None:intergenic | 25.0% |
! | TTTCTTATTGCTCAATGAAA+TGG | - | chr5.3:52307084-52307103 | MS.gene049968:intron | 25.0% |
!! | AATATTGTTATTGTGAACCT+TGG | - | chr5.3:52306011-52306030 | MS.gene049968:CDS | 25.0% |
!! | TTCTGATTGGAATTCAATTT+TGG | - | chr5.3:52306562-52306581 | MS.gene049968:intron | 25.0% |
!!! | TATTTTTTTGTGCTTACTCT+TGG | + | chr5.3:52305602-52305621 | None:intergenic | 25.0% |
!!! | TTAATAGTGATTTGTTATCC+TGG | - | chr5.3:52306610-52306629 | MS.gene049968:intron | 25.0% |
AAAATGCAAACATTGTATGG+TGG | - | chr5.3:52305756-52305775 | MS.gene049968:CDS | 30.0% | |
ACAAACTTGTCTATCCAAAA+GGG | - | chr5.3:52305825-52305844 | MS.gene049968:CDS | 30.0% | |
ACAAAGTATAGGCCAAATAA+TGG | + | chr5.3:52307222-52307241 | None:intergenic | 30.0% | |
ACAGTTATTTGTCTGAAGAA+TGG | - | chr5.3:52306919-52306938 | MS.gene049968:intron | 30.0% | |
ACATGATTCAATTGTAGAGT+TGG | + | chr5.3:52308422-52308441 | None:intergenic | 30.0% | |
AGAGAAGGAAATTTAATGCA+TGG | + | chr5.3:52306861-52306880 | None:intergenic | 30.0% | |
AGTTACTTACTTGAAGTTCA+CGG | + | chr5.3:52306504-52306523 | None:intergenic | 30.0% | |
ATACCTTGTGCATAACATTA+TGG | - | chr5.3:52305697-52305716 | MS.gene049968:CDS | 30.0% | |
ATGAAAACCACTTACAAAGT+TGG | + | chr5.3:52307480-52307499 | None:intergenic | 30.0% | |
CAAAGTATAGGCCAAATAAT+GGG | + | chr5.3:52307221-52307240 | None:intergenic | 30.0% | |
CATTTCAACATGTTCGTAAA+TGG | - | chr5.3:52306435-52306454 | MS.gene049968:CDS | 30.0% | |
CTAGATAATGAAGCAAAAAG+AGG | + | chr5.3:52307400-52307419 | None:intergenic | 30.0% | |
CTGATAAGTTAAAGAAGAGA+AGG | + | chr5.3:52306876-52306895 | None:intergenic | 30.0% | |
GAATCCATATGCAATATACA+TGG | + | chr5.3:52306769-52306788 | None:intergenic | 30.0% | |
GGTATTTAGTGATTTCACAT+CGG | + | chr5.3:52305682-52305701 | None:intergenic | 30.0% | |
GTAAAAGGGTTGAAATTACA+TGG | + | chr5.3:52307443-52307462 | None:intergenic | 30.0% | |
TAAGATACAAGAGAAGCAAA+AGG | - | chr5.3:52306325-52306344 | MS.gene049968:CDS | 30.0% | |
TAGATGATAATAATGATCGC+TGG | + | chr5.3:52308025-52308044 | None:intergenic | 30.0% | |
TATTCAAGAATCTTGATGAG+AGG | + | chr5.3:52306977-52306996 | None:intergenic | 30.0% | |
TCCAAAATGCAAACATTGTA+TGG | - | chr5.3:52305753-52305772 | MS.gene049968:CDS | 30.0% | |
TTCAAAAAGCGACAAAGTAT+AGG | + | chr5.3:52307233-52307252 | None:intergenic | 30.0% | |
! | AAAATTGATTCCAAGTCACT+GGG | - | chr5.3:52307127-52307146 | MS.gene049968:CDS | 30.0% |
! | AACTTTGTAAGTGGTTTTCA+TGG | - | chr5.3:52307479-52307498 | MS.gene049968:CDS | 30.0% |
! | ACAACTTGGTTGATGTAAAA+GGG | + | chr5.3:52307457-52307476 | None:intergenic | 30.0% |
! | ACCATACAATGTTTGCATTT+TGG | + | chr5.3:52305757-52305776 | None:intergenic | 30.0% |
! | ATCTGTATTGATGTTCTGAT+TGG | - | chr5.3:52306549-52306568 | MS.gene049968:intron | 30.0% |
! | GTGTCATTGATGTATGTATT+TGG | + | chr5.3:52305899-52305918 | None:intergenic | 30.0% |
! | TTCTACAGAGTTCTCTTTTT+GGG | - | chr5.3:52305720-52305739 | MS.gene049968:CDS | 30.0% |
!!! | TAGTTTTTTCTTTCGAAAGC+TGG | - | chr5.3:52306367-52306386 | MS.gene049968:CDS | 30.0% |
!!! | TGAATTTTTCTAGCTCAATG+TGG | - | chr5.3:52307623-52307642 | MS.gene049968:CDS | 30.0% |
!!! | TGGATTTCAGTTTTATTTGC+TGG | - | chr5.3:52307104-52307123 | MS.gene049968:intron | 30.0% |
AAAATAGGCAACTTTCGTAG+TGG | + | chr5.3:52307156-52307175 | None:intergenic | 35.0% | |
AAGCAACCATATGAATCACT+AGG | + | chr5.3:52307579-52307598 | None:intergenic | 35.0% | |
AAGTTGTCCAACTTTGTAAG+TGG | - | chr5.3:52307470-52307489 | MS.gene049968:intron | 35.0% | |
ACTTACAAAGTTGGACAACT+TGG | + | chr5.3:52307471-52307490 | None:intergenic | 35.0% | |
AGCAACCATATGAATCACTA+GGG | + | chr5.3:52307578-52307597 | None:intergenic | 35.0% | |
ATATCAATGAGAGGATCAAC+TGG | + | chr5.3:52308329-52308348 | None:intergenic | 35.0% | |
ATCCACACTTATCCTATCAA+GGG | - | chr5.3:52308393-52308412 | MS.gene049968:intron | 35.0% | |
ATGATCGCTGTTCAAAAGAT+TGG | + | chr5.3:52308268-52308287 | None:intergenic | 35.0% | |
ATGATTGCTGGTCAAAAGAT+TGG | + | chr5.3:52307950-52307969 | None:intergenic | 35.0% | |
ATTGCATATGGATTCTATCC+AGG | - | chr5.3:52306774-52306793 | MS.gene049968:intron | 35.0% | |
CAAACTTGTCTATCCAAAAG+GGG | - | chr5.3:52305826-52305845 | MS.gene049968:CDS | 35.0% | |
CAAGTGTGGAACAAACTAAT+TGG | + | chr5.3:52307516-52307535 | None:intergenic | 35.0% | |
CACAAACTTGTCTATCCAAA+AGG | - | chr5.3:52305824-52305843 | MS.gene049968:CDS | 35.0% | |
CAGAATATATTGACGACAAC+AGG | - | chr5.3:52307772-52307791 | MS.gene049968:CDS | 35.0% | |
CAGGAAAACTCATTTGATTG+TGG | - | chr5.3:52307374-52307393 | MS.gene049968:intron | 35.0% | |
CTCAAAAATACCTTTGCACA+AGG | + | chr5.3:52306822-52306841 | None:intergenic | 35.0% | |
GAACCATAATGTTATGCACA+AGG | + | chr5.3:52305703-52305722 | None:intergenic | 35.0% | |
GAGAGGAAGAATGATACATA+TGG | - | chr5.3:52306945-52306964 | MS.gene049968:intron | 35.0% | |
GCTACCATGTATATTGCATA+TGG | - | chr5.3:52306762-52306781 | MS.gene049968:intron | 35.0% | |
GGATAGACAAGTTTGTGAAA+AGG | + | chr5.3:52305821-52305840 | None:intergenic | 35.0% | |
GTCTTGAACTGTTGAACAAA+TGG | + | chr5.3:52308049-52308068 | None:intergenic | 35.0% | |
GTTACTTACTTGAAGTTCAC+GGG | + | chr5.3:52306503-52306522 | None:intergenic | 35.0% | |
TAACTCCCTAGTGATTCATA+TGG | - | chr5.3:52307570-52307589 | MS.gene049968:intron | 35.0% | |
TATATTGACGACAACAGGAT+TGG | - | chr5.3:52307777-52307796 | MS.gene049968:CDS | 35.0% | |
TATCCACACTTATCCTATCA+AGG | - | chr5.3:52308392-52308411 | MS.gene049968:intron | 35.0% | |
TGAATGCAAGTCCCATTATT+TGG | - | chr5.3:52307207-52307226 | MS.gene049968:intron | 35.0% | |
TGTTCGTAAATGGACAAGAA+AGG | - | chr5.3:52306445-52306464 | MS.gene049968:CDS | 35.0% | |
TGTTGAGGAATATCAATGAG+AGG | + | chr5.3:52308338-52308357 | None:intergenic | 35.0% | |
TTCTATTCCCTTGCCAAAAT+GGG | + | chr5.3:52307841-52307860 | None:intergenic | 35.0% | |
TTGCATATGGATTCTATCCA+GGG | - | chr5.3:52306775-52306794 | MS.gene049968:intron | 35.0% | |
TTTCTATTCCCTTGCCAAAA+TGG | + | chr5.3:52307842-52307861 | None:intergenic | 35.0% | |
! | ATTTATTTCTCGCCTATCTC+TGG | - | chr5.3:52307252-52307271 | MS.gene049968:intron | 35.0% |
! | GAAAATTGATTCCAAGTCAC+TGG | - | chr5.3:52307126-52307145 | MS.gene049968:CDS | 35.0% |
! | GACAACTTGGTTGATGTAAA+AGG | + | chr5.3:52307458-52307477 | None:intergenic | 35.0% |
! | GATTAGATGATGATGATTGC+TGG | + | chr5.3:52307962-52307981 | None:intergenic | 35.0% |
! | GTTCTACAGAGTTCTCTTTT+TGG | - | chr5.3:52305719-52305738 | MS.gene049968:CDS | 35.0% |
! | TAGATGATGATAATGATCGC+TGG | + | chr5.3:52308151-52308170 | None:intergenic | 35.0% |
!! | GAATTCAATTTTGGCCATGT+TGG | - | chr5.3:52306571-52306590 | MS.gene049968:intron | 35.0% |
!! | GGTCAGTGTCATTTATTCAA+CGG | - | chr5.3:52307801-52307820 | MS.gene049968:intron | 35.0% |
!! | GTCAGTGTCATTTATTCAAC+GGG | - | chr5.3:52307802-52307821 | MS.gene049968:intron | 35.0% |
!! | TCAGTGTCATTTATTCAACG+GGG | - | chr5.3:52307803-52307822 | MS.gene049968:intron | 35.0% |
!! | TCATGTCTGAAACAGTTTTC+AGG | - | chr5.3:52305793-52305812 | MS.gene049968:CDS | 35.0% |
AAAAGCCTTCATGTGAACCA+TGG | + | chr5.3:52307722-52307741 | None:intergenic | 40.0% | |
AATTACATGGAACTTGAGCC+AGG | + | chr5.3:52307430-52307449 | None:intergenic | 40.0% | |
ACTAATCATCAGCCAGAGAT+AGG | + | chr5.3:52307267-52307286 | None:intergenic | 40.0% | |
ATGATCGCTGGTCAAAAGAT+TGG | + | chr5.3:52308013-52308032 | None:intergenic | 40.0% | |
CAATATATTCTGAGCAGTGC+TGG | + | chr5.3:52307764-52307783 | None:intergenic | 40.0% | |
CACTCGAATATGATGAGTAC+TGG | - | chr5.3:52308356-52308375 | MS.gene049968:intron | 40.0% | |
CATTGTATGGTGGCTAATTC+TGG | - | chr5.3:52305766-52305785 | MS.gene049968:CDS | 40.0% | |
GAAAACCATGGTTCACATGA+AGG | - | chr5.3:52307714-52307733 | MS.gene049968:CDS | 40.0% | |
GAGAAAAGCTGAATGTTCCA+AGG | + | chr5.3:52306031-52306050 | None:intergenic | 40.0% | |
GCATATTTCAGACAAAGAGC+CGG | - | chr5.3:52306726-52306745 | MS.gene049968:CDS | 40.0% | |
GGCGAAGTGGTTAATATTAC+TGG | - | chr5.3:52306631-52306650 | MS.gene049968:intron | 40.0% | |
GTAAGCAAGACATACCTCAA+CGG | + | chr5.3:52307012-52307031 | None:intergenic | 40.0% | |
GTAATATTAACCACTTCGCC+AGG | + | chr5.3:52306631-52306650 | None:intergenic | 40.0% | |
TAAGCAAGACATACCTCAAC+GGG | + | chr5.3:52307011-52307030 | None:intergenic | 40.0% | |
TACAAGAGAAGCAAAAGGCT+AGG | - | chr5.3:52306330-52306349 | MS.gene049968:CDS | 40.0% | |
TCTATCCAGGGACATCATAA+TGG | - | chr5.3:52306787-52306806 | MS.gene049968:intron | 40.0% | |
TGTCTGAAGAATGGAAAGAG+AGG | - | chr5.3:52306928-52306947 | MS.gene049968:intron | 40.0% | |
TTACTTAGCGTAACAGCATC+TGG | + | chr5.3:52305854-52305873 | None:intergenic | 40.0% | |
TTGAGATAAGCATCTGTAGG+TGG | + | chr5.3:52307657-52307676 | None:intergenic | 40.0% | |
TTTGAACTAGCGGAAAACCA+TGG | - | chr5.3:52307702-52307721 | MS.gene049968:CDS | 40.0% | |
! | ATTTTGAACCAAGAGCTGCA+TGG | - | chr5.3:52307904-52307923 | MS.gene049968:intron | 40.0% |
! | CTCATCATATTCGAGTGTTG+AGG | + | chr5.3:52308353-52308372 | None:intergenic | 40.0% |
! | TCAAATGAGTTTTCCTGCTG+TGG | + | chr5.3:52307371-52307390 | None:intergenic | 40.0% |
! | TCATTATCTAGAGCTCTTCC+TGG | - | chr5.3:52307409-52307428 | MS.gene049968:intron | 40.0% |
! | TTTTGAACCAAGAGCTGCAT+GGG | - | chr5.3:52307905-52307924 | MS.gene049968:intron | 40.0% |
!! | TGAGTACTGGCAACAAGAAT+TGG | - | chr5.3:52308369-52308388 | MS.gene049968:intron | 40.0% |
!! | TGGAAGTAGCTTGTTAGTCT+AGG | + | chr5.3:52305582-52305601 | None:intergenic | 40.0% |
!!! | GAGTTCTCTTTTTGGGACAT+AGG | - | chr5.3:52305727-52305746 | MS.gene049968:CDS | 40.0% |
!!! | TTTTCTAGCTCAATGTGGAC+TGG | - | chr5.3:52307628-52307647 | MS.gene049968:CDS | 40.0% |
AAGAGCCGGAAAAGTCACTT+AGG | - | chr5.3:52306740-52306759 | MS.gene049968:CDS | 45.0% | |
AAGCAAGACATACCTCAACG+GGG | + | chr5.3:52307010-52307029 | None:intergenic | 45.0% | |
ATGAGAGACCTCCAAAGAAG+AGG | - | chr5.3:52308519-52308538 | MS.gene049968:intron | 45.0% | |
ATGATCGCTGGTCAAAAGAC+TGG | + | chr5.3:52308202-52308221 | None:intergenic | 45.0% | |
ATTGACGACAACAGGATTGG+CGG | - | chr5.3:52307780-52307799 | MS.gene049968:CDS | 45.0% | |
CGCTTGAGATAAGCATCTGT+AGG | + | chr5.3:52307660-52307679 | None:intergenic | 45.0% | |
CTTTCGAAAGCTGGCTGATA+TGG | - | chr5.3:52306376-52306395 | MS.gene049968:CDS | 45.0% | |
GATTCCATGACTTCCATCCA+AGG | + | chr5.3:52308557-52308576 | None:intergenic | 45.0% | |
GTCCCTTGATAGGATAAGTG+TGG | + | chr5.3:52308398-52308417 | None:intergenic | 45.0% | |
GTCTGAAAGACCTTGTGCAA+AGG | - | chr5.3:52306809-52306828 | MS.gene049968:intron | 45.0% | |
GTTATAAGTGCACCACCATG+TGG | + | chr5.3:52306145-52306164 | None:intergenic | 45.0% | |
TCAGACCATTATGATGTCCC+TGG | + | chr5.3:52306795-52306814 | None:intergenic | 45.0% | |
TGTGACTGAATGTCCTTGAC+AGG | - | chr5.3:52307343-52307362 | MS.gene049968:CDS | 45.0% | |
TTTGAACCAAGAGCTGCATG+GGG | - | chr5.3:52307906-52307925 | MS.gene049968:intron | 45.0% | |
! | GGTAGCCTAAGTGACTTTTC+CGG | + | chr5.3:52306748-52306767 | None:intergenic | 45.0% |
! | TATGCATTTTCTCCCCGTTG+AGG | - | chr5.3:52306995-52307014 | MS.gene049968:intron | 45.0% |
!! | ATCGACTTCCCATTTTGGCA+AGG | - | chr5.3:52307830-52307849 | MS.gene049968:intron | 45.0% |
!! | GATTTGTTATCCTGGCGAAG+TGG | - | chr5.3:52306618-52306637 | MS.gene049968:intron | 45.0% |
!! | GTGTCATTTATTCAACGGGG+AGG | - | chr5.3:52307806-52307825 | MS.gene049968:intron | 45.0% |
!! | TAGAGTTGGTGTCCCTTGAT+AGG | + | chr5.3:52308408-52308427 | None:intergenic | 45.0% |
!! | TCGACTTCCCATTTTGGCAA+GGG | - | chr5.3:52307831-52307850 | MS.gene049968:intron | 45.0% |
AGAGACCTCCAAAGAAGAGG+CGG | - | chr5.3:52308522-52308541 | MS.gene049968:intron | 50.0% | |
ATAAGCCGCCTCTTCTTTGG+AGG | + | chr5.3:52308530-52308549 | None:intergenic | 50.0% | |
CAGATTTGCCGTCACAAGCA+GGG | + | chr5.3:52306415-52306434 | None:intergenic | 50.0% | |
CTGGTTATCACCATCGTCAG+GGG | + | chr5.3:52307745-52307764 | None:intergenic | 50.0% | |
GCTGGTTATCACCATCGTCA+GGG | + | chr5.3:52307746-52307765 | None:intergenic | 50.0% | |
GTAGTGGTTTCCCAGTGACT+TGG | + | chr5.3:52307140-52307159 | None:intergenic | 50.0% | |
TCCAGTGATGTCTGCCAACA+TGG | + | chr5.3:52306588-52306607 | None:intergenic | 50.0% | |
TCCATGACTTCCATCCAAGG+AGG | + | chr5.3:52308554-52308573 | None:intergenic | 50.0% | |
! | ACAGCATCTGGATCCCCTTT+TGG | + | chr5.3:52305842-52305861 | None:intergenic | 50.0% |
! | TGCTGGTTATCACCATCGTC+AGG | + | chr5.3:52307747-52307766 | None:intergenic | 50.0% |
!!! | GAGGCATCGACTTCCCATTT+TGG | - | chr5.3:52307825-52307844 | MS.gene049968:intron | 50.0% |
AATCCCCACCCTGCTTGTGA+CGG | - | chr5.3:52306404-52306423 | MS.gene049968:CDS | 55.0% | |
ATTTGCCGTCACAAGCAGGG+TGG | + | chr5.3:52306412-52306431 | None:intergenic | 55.0% | |
GAAGTTCCCCATGCAGCTCT+TGG | + | chr5.3:52307915-52307934 | None:intergenic | 55.0% | |
GCAGATTTGCCGTCACAAGC+AGG | + | chr5.3:52306416-52306435 | None:intergenic | 55.0% | |
GCCATGTTGGCAGACATCAC+TGG | - | chr5.3:52306584-52306603 | MS.gene049968:intron | 55.0% | |
GCCTCCTTGGATGGAAGTCA+TGG | - | chr5.3:52308550-52308569 | MS.gene049968:CDS | 55.0% | |
GGCATAAGCCGCCTCTTCTT+TGG | + | chr5.3:52308533-52308552 | None:intergenic | 55.0% | |
TCCTGCTGTGGTACCTGTCA+AGG | + | chr5.3:52307359-52307378 | None:intergenic | 55.0% | |
TCCTTGACAGGTACCACAGC+AGG | - | chr5.3:52307355-52307374 | MS.gene049968:CDS | 55.0% | |
TTTGCCGTCACAAGCAGGGT+GGG | + | chr5.3:52306411-52306430 | None:intergenic | 55.0% | |
! | GAAGGCTTTTCCCCTGACGA+TGG | - | chr5.3:52307732-52307751 | MS.gene049968:CDS | 55.0% |
AGAGGCGGCTTATGCCTCCT+TGG | - | chr5.3:52308537-52308556 | MS.gene049968:CDS | 60.0% | |
GCGGCTTATGCCTCCTTGGA+TGG | - | chr5.3:52308541-52308560 | MS.gene049968:CDS | 60.0% | |
TTGCCGTCACAAGCAGGGTG+GGG | + | chr5.3:52306410-52306429 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 52305549 | 52308580 | 52305549 | ID=MS.gene049968 |
chr5.3 | mRNA | 52305549 | 52308580 | 52305549 | ID=MS.gene049968.t1;Parent=MS.gene049968 |
chr5.3 | exon | 52308525 | 52308580 | 52308525 | ID=MS.gene049968.t1.exon1;Parent=MS.gene049968.t1 |
chr5.3 | CDS | 52308525 | 52308580 | 52308525 | ID=cds.MS.gene049968.t1;Parent=MS.gene049968.t1 |
chr5.3 | exon | 52308190 | 52308321 | 52308190 | ID=MS.gene049968.t1.exon2;Parent=MS.gene049968.t1 |
chr5.3 | CDS | 52308190 | 52308321 | 52308190 | ID=cds.MS.gene049968.t1;Parent=MS.gene049968.t1 |
chr5.3 | exon | 52307616 | 52307816 | 52307616 | ID=MS.gene049968.t1.exon3;Parent=MS.gene049968.t1 |
chr5.3 | CDS | 52307616 | 52307816 | 52307616 | ID=cds.MS.gene049968.t1;Parent=MS.gene049968.t1 |
chr5.3 | exon | 52307477 | 52307532 | 52307477 | ID=MS.gene049968.t1.exon4;Parent=MS.gene049968.t1 |
chr5.3 | CDS | 52307477 | 52307532 | 52307477 | ID=cds.MS.gene049968.t1;Parent=MS.gene049968.t1 |
chr5.3 | exon | 52307299 | 52307392 | 52307299 | ID=MS.gene049968.t1.exon5;Parent=MS.gene049968.t1 |
chr5.3 | CDS | 52307299 | 52307392 | 52307299 | ID=cds.MS.gene049968.t1;Parent=MS.gene049968.t1 |
chr5.3 | exon | 52307113 | 52307206 | 52307113 | ID=MS.gene049968.t1.exon6;Parent=MS.gene049968.t1 |
chr5.3 | CDS | 52307113 | 52307206 | 52307113 | ID=cds.MS.gene049968.t1;Parent=MS.gene049968.t1 |
chr5.3 | exon | 52306645 | 52306764 | 52306645 | ID=MS.gene049968.t1.exon7;Parent=MS.gene049968.t1 |
chr5.3 | CDS | 52306645 | 52306764 | 52306645 | ID=cds.MS.gene049968.t1;Parent=MS.gene049968.t1 |
chr5.3 | exon | 52305549 | 52306493 | 52305549 | ID=MS.gene049968.t1.exon8;Parent=MS.gene049968.t1 |
chr5.3 | CDS | 52305549 | 52306493 | 52305549 | ID=cds.MS.gene049968.t1;Parent=MS.gene049968.t1 |
Gene Sequence |
Protein sequence |