Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90702.t1 | XP_013466134.1 | 96.4 | 331 | 12 | 0 | 1 | 331 | 1 | 331 | 3.00E-186 | 661 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90702.t1 | Q9XES5 | 74.2 | 326 | 84 | 0 | 1 | 326 | 1 | 326 | 2.8e-148 | 526.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90702.t1 | Q6TQT1 | 96.4 | 331 | 12 | 0 | 1 | 331 | 1 | 331 | 2.2e-186 | 661.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049907 | MS.gene90702 | 0.816445 | 5.51E-52 | -1.69E-46 |
| MS.gene059530 | MS.gene90702 | 0.831034 | 2.10E-55 | -1.69E-46 |
| MS.gene060356 | MS.gene90702 | 0.820561 | 6.43E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene90702 | MS.gene50853 | PPI |
| MS.gene058751 | MS.gene90702 | PPI |
| MS.gene058752 | MS.gene90702 | PPI |
| MS.gene50831 | MS.gene90702 | PPI |
| MS.gene50852 | MS.gene90702 | PPI |
| MS.gene90702 | MS.gene009245 | PPI |
| MS.gene90702 | MS.gene50830 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90702.t1 | MTR_1g022445 | 96.375 | 331 | 12 | 0 | 1 | 331 | 1 | 331 | 0.0 | 666 |
| MS.gene90702.t1 | MTR_1g022440 | 79.701 | 335 | 68 | 0 | 1 | 335 | 1 | 335 | 0.0 | 579 |
| MS.gene90702.t1 | MTR_7g074850 | 47.826 | 322 | 164 | 3 | 8 | 325 | 8 | 329 | 4.14e-103 | 306 |
| MS.gene90702.t1 | MTR_7g074820 | 47.516 | 322 | 165 | 3 | 8 | 325 | 8 | 329 | 9.41e-102 | 303 |
| MS.gene90702.t1 | MTR_7g074880 | 48.287 | 321 | 161 | 4 | 8 | 325 | 8 | 326 | 2.22e-101 | 301 |
| MS.gene90702.t1 | MTR_7g074730 | 45.794 | 321 | 171 | 3 | 8 | 325 | 8 | 328 | 1.53e-98 | 294 |
| MS.gene90702.t1 | MTR_4g092080 | 43.385 | 325 | 173 | 4 | 9 | 324 | 15 | 337 | 1.47e-96 | 290 |
| MS.gene90702.t1 | MTR_7g074710 | 44.860 | 321 | 172 | 4 | 8 | 325 | 8 | 326 | 4.39e-95 | 285 |
| MS.gene90702.t1 | MTR_4g023730 | 42.724 | 323 | 181 | 2 | 7 | 325 | 7 | 329 | 3.24e-92 | 278 |
| MS.gene90702.t1 | MTR_4g081440 | 42.522 | 341 | 162 | 8 | 9 | 326 | 21 | 350 | 4.47e-91 | 276 |
| MS.gene90702.t1 | MTR_4g081440 | 42.398 | 342 | 162 | 8 | 9 | 326 | 25 | 355 | 6.21e-91 | 276 |
| MS.gene90702.t1 | MTR_3g005210 | 39.628 | 323 | 182 | 6 | 5 | 322 | 3 | 317 | 1.16e-79 | 246 |
| MS.gene90702.t1 | MTR_7g074870 | 45.614 | 285 | 151 | 3 | 43 | 325 | 6 | 288 | 2.41e-79 | 244 |
| MS.gene90702.t1 | MTR_3g005170 | 38.650 | 326 | 187 | 6 | 2 | 322 | 4 | 321 | 2.75e-78 | 243 |
| MS.gene90702.t1 | MTR_8g062440 | 40.854 | 328 | 184 | 6 | 1 | 325 | 1 | 321 | 4.10e-77 | 239 |
| MS.gene90702.t1 | MTR_2g101330 | 38.253 | 332 | 196 | 6 | 4 | 332 | 1 | 326 | 5.46e-76 | 237 |
| MS.gene90702.t1 | MTR_5g056600 | 39.688 | 320 | 185 | 6 | 9 | 325 | 5 | 319 | 1.76e-75 | 235 |
| MS.gene90702.t1 | MTR_8g062440 | 40.729 | 329 | 184 | 7 | 1 | 325 | 1 | 322 | 2.63e-75 | 235 |
| MS.gene90702.t1 | MTR_8g062110 | 39.521 | 334 | 180 | 7 | 1 | 325 | 2 | 322 | 4.41e-75 | 234 |
| MS.gene90702.t1 | MTR_8g062110 | 39.521 | 334 | 180 | 7 | 1 | 325 | 11 | 331 | 4.97e-75 | 234 |
| MS.gene90702.t1 | MTR_3g005170 | 40.780 | 282 | 155 | 5 | 3 | 279 | 5 | 279 | 3.39e-74 | 231 |
| MS.gene90702.t1 | MTR_4g077130 | 38.580 | 324 | 190 | 5 | 2 | 322 | 3 | 320 | 8.58e-73 | 228 |
| MS.gene90702.t1 | MTR_8g062440 | 43.262 | 282 | 151 | 5 | 1 | 279 | 1 | 276 | 2.74e-72 | 227 |
| MS.gene90702.t1 | MTR_4g077100 | 39.564 | 321 | 185 | 6 | 5 | 322 | 8 | 322 | 1.00e-71 | 226 |
| MS.gene90702.t1 | MTR_8g062110 | 40.972 | 288 | 149 | 6 | 1 | 279 | 2 | 277 | 2.98e-69 | 218 |
| MS.gene90702.t1 | MTR_8g062110 | 40.972 | 288 | 149 | 6 | 1 | 279 | 2 | 277 | 3.32e-69 | 218 |
| MS.gene90702.t1 | MTR_4g006940 | 39.877 | 326 | 178 | 10 | 6 | 326 | 15 | 327 | 7.70e-69 | 219 |
| MS.gene90702.t1 | MTR_4g077100 | 41.727 | 278 | 154 | 5 | 5 | 279 | 8 | 280 | 2.44e-68 | 216 |
| MS.gene90702.t1 | MTR_2g104960 | 40.432 | 324 | 179 | 10 | 5 | 325 | 17 | 329 | 3.44e-68 | 217 |
| MS.gene90702.t1 | MTR_5g072620 | 36.170 | 329 | 193 | 8 | 4 | 325 | 1 | 319 | 4.24e-66 | 211 |
| MS.gene90702.t1 | MTR_3g031650 | 35.866 | 329 | 194 | 7 | 4 | 325 | 1 | 319 | 3.70e-65 | 209 |
| MS.gene90702.t1 | MTR_4g009040 | 36.646 | 322 | 189 | 10 | 8 | 325 | 13 | 323 | 1.21e-64 | 207 |
| MS.gene90702.t1 | MTR_4g009040 | 36.196 | 326 | 189 | 11 | 8 | 325 | 13 | 327 | 2.61e-62 | 202 |
| MS.gene90702.t1 | MTR_4g006940 | 40.942 | 276 | 151 | 7 | 6 | 279 | 15 | 280 | 1.70e-61 | 198 |
| MS.gene90702.t1 | MTR_4g006940 | 40.942 | 276 | 151 | 7 | 6 | 279 | 15 | 280 | 1.70e-61 | 198 |
| MS.gene90702.t1 | MTR_3g031650 | 37.857 | 280 | 158 | 6 | 4 | 276 | 1 | 271 | 6.05e-60 | 194 |
| MS.gene90702.t1 | MTR_4g009690 | 35.625 | 320 | 194 | 8 | 8 | 325 | 13 | 322 | 6.24e-59 | 193 |
| MS.gene90702.t1 | MTR_3g005170 | 33.742 | 326 | 172 | 7 | 2 | 322 | 4 | 290 | 1.37e-58 | 191 |
| MS.gene90702.t1 | MTR_4g009690 | 35.826 | 321 | 193 | 9 | 8 | 325 | 13 | 323 | 2.09e-57 | 189 |
| MS.gene90702.t1 | MTR_2g013230 | 34.524 | 336 | 199 | 7 | 8 | 325 | 8 | 340 | 2.67e-56 | 186 |
| MS.gene90702.t1 | MTR_2g013250 | 34.132 | 334 | 199 | 7 | 8 | 323 | 7 | 337 | 7.81e-55 | 182 |
| MS.gene90702.t1 | MTR_2g028620 | 33.837 | 331 | 196 | 11 | 6 | 325 | 8 | 326 | 1.17e-50 | 172 |
| MS.gene90702.t1 | MTR_2g013260 | 33.234 | 334 | 202 | 7 | 8 | 323 | 8 | 338 | 2.23e-49 | 169 |
| MS.gene90702.t1 | MTR_7g117190 | 31.250 | 336 | 211 | 7 | 8 | 325 | 7 | 340 | 2.31e-46 | 160 |
| MS.gene90702.t1 | MTR_2g028620 | 35.461 | 282 | 160 | 10 | 6 | 276 | 8 | 278 | 7.48e-46 | 159 |
| MS.gene90702.t1 | MTR_2g013260 | 34.138 | 290 | 172 | 6 | 8 | 279 | 8 | 296 | 2.40e-44 | 154 |
| MS.gene90702.t1 | MTR_7g117190 | 32.753 | 287 | 175 | 6 | 8 | 276 | 7 | 293 | 2.09e-41 | 147 |
| MS.gene90702.t1 | MTR_8g062110 | 32.636 | 239 | 139 | 7 | 96 | 325 | 11 | 236 | 4.93e-32 | 120 |
| MS.gene90702.t1 | MTR_5g029990 | 29.114 | 316 | 182 | 11 | 5 | 305 | 9 | 297 | 7.15e-31 | 119 |
| MS.gene90702.t1 | MTR_0164s0070 | 40.769 | 130 | 76 | 1 | 4 | 132 | 1 | 130 | 7.64e-30 | 113 |
| MS.gene90702.t1 | MTR_2g013230 | 31.535 | 241 | 144 | 7 | 103 | 325 | 13 | 250 | 1.12e-28 | 111 |
| MS.gene90702.t1 | MTR_8g062110 | 33.161 | 193 | 108 | 6 | 96 | 279 | 11 | 191 | 3.02e-26 | 103 |
| MS.gene90702.t1 | MTR_6g406250 | 29.730 | 259 | 156 | 11 | 8 | 253 | 55 | 300 | 5.27e-24 | 101 |
| MS.gene90702.t1 | MTR_2g013260 | 29.461 | 241 | 149 | 7 | 101 | 323 | 30 | 267 | 2.23e-21 | 92.8 |
| MS.gene90702.t1 | MTR_6g406250 | 29.767 | 215 | 135 | 7 | 8 | 213 | 55 | 262 | 5.23e-21 | 91.3 |
| MS.gene90702.t1 | MTR_7g117190 | 26.957 | 230 | 148 | 7 | 114 | 325 | 3 | 230 | 7.18e-18 | 81.6 |
| MS.gene90702.t1 | MTR_0685s0030 | 28.395 | 162 | 112 | 3 | 161 | 322 | 2 | 159 | 3.21e-14 | 70.1 |
| MS.gene90702.t1 | MTR_3g011130 | 35.537 | 121 | 67 | 5 | 99 | 213 | 30 | 145 | 6.55e-14 | 68.6 |
| MS.gene90702.t1 | MTR_0685s0030 | 29.060 | 117 | 81 | 1 | 163 | 279 | 3 | 117 | 3.62e-11 | 60.1 |
| MS.gene90702.t1 | MTR_8g062710 | 41.975 | 81 | 36 | 2 | 8 | 88 | 20 | 89 | 6.46e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90702.t1 | AT5G42800 | 69.632 | 326 | 99 | 0 | 1 | 326 | 1 | 326 | 1.10e-177 | 498 |
| MS.gene90702.t1 | AT4G35420 | 43.125 | 320 | 174 | 6 | 8 | 325 | 8 | 321 | 7.68e-91 | 275 |
| MS.gene90702.t1 | AT1G61720 | 42.943 | 333 | 173 | 5 | 5 | 325 | 10 | 337 | 1.04e-88 | 270 |
| MS.gene90702.t1 | AT2G45400 | 43.077 | 325 | 178 | 3 | 8 | 325 | 40 | 364 | 3.73e-88 | 269 |
| MS.gene90702.t1 | AT1G09510 | 42.378 | 328 | 180 | 5 | 1 | 325 | 1 | 322 | 7.33e-80 | 246 |
| MS.gene90702.t1 | AT4G27250 | 38.095 | 336 | 182 | 9 | 3 | 317 | 8 | 338 | 8.49e-79 | 245 |
| MS.gene90702.t1 | AT1G51410 | 39.009 | 323 | 188 | 5 | 6 | 325 | 7 | 323 | 1.04e-78 | 244 |
| MS.gene90702.t1 | AT4G27250 | 38.298 | 329 | 181 | 8 | 3 | 317 | 8 | 328 | 3.63e-77 | 240 |
| MS.gene90702.t1 | AT2G45400 | 43.885 | 278 | 149 | 3 | 8 | 278 | 40 | 317 | 1.09e-76 | 238 |
| MS.gene90702.t1 | AT5G19440 | 40.000 | 325 | 182 | 6 | 5 | 324 | 7 | 323 | 3.82e-74 | 232 |
| MS.gene90702.t1 | AT1G66800 | 39.815 | 324 | 182 | 8 | 1 | 319 | 1 | 316 | 2.87e-72 | 227 |
| MS.gene90702.t1 | AT2G45400 | 40.345 | 290 | 168 | 2 | 41 | 325 | 18 | 307 | 4.02e-70 | 221 |
| MS.gene90702.t1 | AT1G09490 | 38.872 | 337 | 179 | 8 | 1 | 325 | 1 | 322 | 5.05e-70 | 221 |
| MS.gene90702.t1 | AT1G68540 | 38.629 | 321 | 187 | 7 | 10 | 325 | 6 | 321 | 3.81e-69 | 219 |
| MS.gene90702.t1 | AT1G09480 | 38.855 | 332 | 186 | 8 | 1 | 325 | 1 | 322 | 1.11e-67 | 215 |
| MS.gene90702.t1 | AT1G09480 | 38.855 | 332 | 186 | 8 | 1 | 325 | 48 | 369 | 3.81e-67 | 215 |
| MS.gene90702.t1 | AT1G15950 | 39.198 | 324 | 183 | 10 | 5 | 325 | 10 | 322 | 5.04e-67 | 214 |
| MS.gene90702.t1 | AT1G15950 | 39.198 | 324 | 183 | 10 | 5 | 325 | 10 | 322 | 5.04e-67 | 214 |
| MS.gene90702.t1 | AT2G33590 | 36.760 | 321 | 191 | 8 | 8 | 325 | 9 | 320 | 1.85e-66 | 212 |
| MS.gene90702.t1 | AT1G15950 | 39.550 | 311 | 175 | 9 | 5 | 312 | 10 | 310 | 3.29e-65 | 209 |
| MS.gene90702.t1 | AT2G02400 | 36.858 | 331 | 182 | 11 | 6 | 325 | 4 | 318 | 4.93e-65 | 208 |
| MS.gene90702.t1 | AT1G80820 | 39.130 | 322 | 182 | 10 | 8 | 326 | 8 | 318 | 6.20e-65 | 209 |
| MS.gene90702.t1 | AT1G09500 | 37.015 | 335 | 191 | 8 | 1 | 325 | 1 | 325 | 8.24e-65 | 208 |
| MS.gene90702.t1 | AT1G25460 | 37.879 | 330 | 186 | 9 | 4 | 325 | 1 | 319 | 8.89e-65 | 207 |
| MS.gene90702.t1 | AT5G58490 | 35.474 | 327 | 194 | 7 | 6 | 325 | 7 | 323 | 2.00e-64 | 207 |
| MS.gene90702.t1 | AT1G09500 | 39.024 | 287 | 158 | 6 | 1 | 279 | 1 | 278 | 1.51e-63 | 203 |
| MS.gene90702.t1 | AT2G33600 | 35.625 | 320 | 196 | 7 | 8 | 325 | 9 | 320 | 1.31e-60 | 197 |
| MS.gene90702.t1 | AT1G15950 | 40.000 | 280 | 156 | 8 | 5 | 282 | 10 | 279 | 7.11e-59 | 192 |
| MS.gene90702.t1 | AT1G15950 | 40.433 | 277 | 153 | 8 | 5 | 279 | 10 | 276 | 8.49e-59 | 191 |
| MS.gene90702.t1 | AT2G45400 | 46.759 | 216 | 108 | 3 | 8 | 216 | 40 | 255 | 2.34e-58 | 189 |
| MS.gene90702.t1 | AT1G15950 | 40.072 | 277 | 154 | 8 | 5 | 279 | 10 | 276 | 4.74e-58 | 189 |
| MS.gene90702.t1 | AT1G80820 | 39.781 | 274 | 153 | 8 | 8 | 279 | 8 | 271 | 4.49e-56 | 184 |
| MS.gene90702.t1 | AT1G76470 | 33.333 | 327 | 212 | 6 | 3 | 327 | 2 | 324 | 1.64e-55 | 184 |
| MS.gene90702.t1 | AT1G09490 | 36.242 | 298 | 163 | 8 | 40 | 325 | 9 | 291 | 2.38e-51 | 172 |
| MS.gene90702.t1 | AT1G09500 | 34.680 | 297 | 174 | 8 | 39 | 325 | 5 | 291 | 2.26e-47 | 162 |
| MS.gene90702.t1 | AT1G68540 | 35.616 | 219 | 132 | 6 | 111 | 325 | 1 | 214 | 2.58e-35 | 128 |
| MS.gene90702.t1 | AT1G15950 | 34.783 | 230 | 141 | 7 | 99 | 325 | 1 | 224 | 1.08e-34 | 127 |
| MS.gene90702.t1 | AT4G30470 | 28.223 | 287 | 172 | 12 | 9 | 282 | 11 | 276 | 1.65e-28 | 112 |
| MS.gene90702.t1 | AT2G23910 | 26.786 | 280 | 184 | 11 | 9 | 281 | 11 | 276 | 8.80e-28 | 110 |
| MS.gene90702.t1 | AT2G23910 | 26.978 | 278 | 182 | 11 | 9 | 279 | 11 | 274 | 1.27e-27 | 109 |
| MS.gene90702.t1 | AT2G23910 | 26.578 | 301 | 198 | 12 | 9 | 300 | 11 | 297 | 1.65e-27 | 110 |
| MS.gene90702.t1 | AT5G14700 | 29.771 | 262 | 157 | 10 | 8 | 253 | 55 | 305 | 5.74e-22 | 95.9 |
| MS.gene90702.t1 | AT4G33360 | 28.623 | 276 | 172 | 9 | 8 | 277 | 15 | 271 | 2.06e-21 | 93.2 |
| MS.gene90702.t1 | AT4G33360 | 28.623 | 276 | 172 | 9 | 8 | 277 | 3 | 259 | 3.18e-21 | 93.2 |
| MS.gene90702.t1 | AT4G33360 | 28.623 | 276 | 172 | 9 | 8 | 277 | 15 | 271 | 4.47e-21 | 92.8 |
| MS.gene90702.t1 | AT5G14700 | 31.000 | 200 | 122 | 6 | 8 | 196 | 55 | 249 | 6.63e-19 | 85.9 |
| MS.gene90702.t1 | AT2G23910 | 25.385 | 260 | 171 | 12 | 50 | 300 | 18 | 263 | 3.06e-18 | 83.6 |
Find 82 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGATCTTCAGTAACGTTT+AGG | 0.241553 | 1.4:-1822507 | None:intergenic |
| ATTGATACATGCAGAGAAAA+AGG | 0.247887 | 1.4:+1823498 | MS.gene90702:CDS |
| ATTGGTGCTTTAACAAATTC+AGG | 0.252064 | 1.4:-1823528 | None:intergenic |
| TTCAGTAACGTTTAGGGTTC+CGG | 0.269534 | 1.4:-1822500 | None:intergenic |
| ATGATCAAGCCTACCATAAA+AGG | 0.270848 | 1.4:+1822409 | MS.gene90702:CDS |
| CATATTCTTGTTTGAGCATA+TGG | 0.271150 | 1.4:+1823163 | MS.gene90702:CDS |
| TGTTTGCGTCACAGGGGCTT+CGG | 0.316160 | 1.4:+1820384 | MS.gene90702:CDS |
| GATCATCCAAGTGGACAAAT+TGG | 0.337508 | 1.4:-1823127 | None:intergenic |
| TTGATCTTCAGTAACGTTTA+GGG | 0.340589 | 1.4:-1822506 | None:intergenic |
| TTTGAGCATATGGAAGTAGA+AGG | 0.341082 | 1.4:+1823173 | MS.gene90702:CDS |
| GCCGAAACTGTTTGCGTCAC+AGG | 0.351008 | 1.4:+1820376 | MS.gene90702:CDS |
| TGTGTGACACCATTACTTAT+TGG | 0.352169 | 1.4:-1823546 | None:intergenic |
| GAAGTCAATCTTGTGCTCTT+TGG | 0.352685 | 1.4:-1822776 | None:intergenic |
| AATCAATCTACGGACAGTTT+TGG | 0.354166 | 1.4:-1822464 | None:intergenic |
| CAAGAATATTCCAGATCAAT+TGG | 0.355555 | 1.4:+1823392 | MS.gene90702:CDS |
| GTTTGCGTCACAGGGGCTTC+GGG | 0.370303 | 1.4:+1820385 | MS.gene90702:CDS |
| CCCTGTGACGCAAACAGTTT+CGG | 0.380229 | 1.4:-1820377 | None:intergenic |
| CTTCGGGTTTCATCGGGTCA+TGG | 0.381174 | 1.4:+1820401 | MS.gene90702:CDS |
| CTCACAAGCTCCAATTGATC+TGG | 0.389786 | 1.4:-1823402 | None:intergenic |
| ACAGGGGCTTCGGGTTTCAT+CGG | 0.391119 | 1.4:+1820394 | MS.gene90702:CDS |
| ATCATCCCACCTCTTGTTGT+TGG | 0.405200 | 1.4:+1822805 | MS.gene90702:CDS |
| TTTGTGGGGATATTGTACTC+TGG | 0.409401 | 1.4:-1823263 | None:intergenic |
| CAAAGAGCAAACTGTCCATT+TGG | 0.411352 | 1.4:+1820724 | MS.gene90702:CDS |
| TTTATAAATGTACCAGTGAT+AGG | 0.412138 | 1.4:-1822877 | None:intergenic |
| CAGGGGCTTCGGGTTTCATC+GGG | 0.419287 | 1.4:+1820395 | MS.gene90702:CDS |
| TGAGTAAGTACTTACTTTGT+GGG | 0.423226 | 1.4:-1823278 | None:intergenic |
| TTGTGGGGATATTGTACTCT+GGG | 0.449070 | 1.4:-1823262 | None:intergenic |
| GAAGCAATTAAAGGGTGTAC+TGG | 0.456664 | 1.4:+1820780 | MS.gene90702:CDS |
| TATGGGTACCTCAGGGTCCT+TGG | 0.456797 | 1.4:-1820838 | None:intergenic |
| GACAGTTTGCTCTTTGCACC+TGG | 0.475948 | 1.4:-1820717 | None:intergenic |
| GCAAGGCCAATTTGTCCACT+TGG | 0.475951 | 1.4:+1823121 | MS.gene90702:CDS |
| TAGGAGAAAGGGCAGTGATT+AGG | 0.477149 | 1.4:-1822858 | None:intergenic |
| ATCAAAGAAGATCAAAGACT+TGG | 0.477770 | 1.4:+1823431 | MS.gene90702:CDS |
| GGCATAGTTGGAATAAGAAA+AGG | 0.483517 | 1.4:-1822829 | None:intergenic |
| GCACAAATTTGCAGGAAATG+AGG | 0.483996 | 1.4:+1823079 | MS.gene90702:intron |
| ATTAGGCTAGGTGGCATAGT+TGG | 0.487275 | 1.4:-1822841 | None:intergenic |
| TTGAGCATATGGAAGTAGAA+GGG | 0.498318 | 1.4:+1823174 | MS.gene90702:CDS |
| CCGAAACTGTTTGCGTCACA+GGG | 0.498950 | 1.4:+1820377 | MS.gene90702:CDS |
| AAAATAAAATATGGGTTCCA+TGG | 0.504913 | 1.4:+1820354 | None:intergenic |
| ACTCATGGAGCGCGGTTACA+TGG | 0.507446 | 1.4:+1820435 | MS.gene90702:CDS |
| ATTTGAATTTAAATACAGCT+TGG | 0.508167 | 1.4:+1823455 | MS.gene90702:CDS |
| ATGTACCAGTGATAGGAGAA+AGG | 0.508607 | 1.4:-1822870 | None:intergenic |
| GAATGCAGAAAACTTGAAGA+AGG | 0.510219 | 1.4:+1820674 | MS.gene90702:intron |
| TGTACCAGTGATAGGAGAAA+GGG | 0.510873 | 1.4:-1822869 | None:intergenic |
| TTGATTTACACATCGTCCGC+CGG | 0.512560 | 1.4:+1822481 | MS.gene90702:CDS |
| GTTAAAGCACCAATAAGTAA+TGG | 0.513064 | 1.4:+1823537 | MS.gene90702:CDS |
| TGAATTTAAATACAGCTTGG+AGG | 0.514592 | 1.4:+1823458 | MS.gene90702:CDS |
| ACCAAGGTCAGCCTTCCAAA+TGG | 0.516767 | 1.4:-1820739 | None:intergenic |
| TGAAGATCAAAAGCCCTTGT+GGG | 0.521869 | 1.4:+1822519 | MS.gene90702:CDS |
| TCCATTTGGAAGGCTGACCT+TGG | 0.530988 | 1.4:+1820738 | MS.gene90702:CDS |
| AAGGCTGACCTTGGTGAAGA+AGG | 0.534105 | 1.4:+1820747 | MS.gene90702:CDS |
| AGTCATTTGTTAGAACTGCC+AGG | 0.542432 | 1.4:+1820699 | MS.gene90702:CDS |
| CTGAAGATCAAAAGCCCTTG+TGG | 0.543581 | 1.4:+1822518 | MS.gene90702:CDS |
| ATGGCTTGTCATGAGACTCA+TGG | 0.550625 | 1.4:+1820420 | MS.gene90702:CDS |
| GACGCAAACAGTTTCGGCCA+TGG | 0.555179 | 1.4:-1820371 | None:intergenic |
| GGAGAGTGAAGATGACTGGC+TGG | 0.556468 | 1.4:+1822575 | MS.gene90702:CDS |
| CGAGCAACAGTCCGCGACCC+AGG | 0.559232 | 1.4:+1820460 | MS.gene90702:CDS |
| CACTTGCGGAGCAAGAAGCA+TGG | 0.562977 | 1.4:+1822746 | MS.gene90702:CDS |
| TGCAGGAGAGTGAAGATGAC+TGG | 0.565963 | 1.4:+1822571 | MS.gene90702:CDS |
| TCAAAGAAGATCAAAGACTT+GGG | 0.567744 | 1.4:+1823432 | MS.gene90702:CDS |
| GAAAGGGCAGTGATTAGGCT+AGG | 0.570840 | 1.4:-1822853 | None:intergenic |
| AAAGGACCAACAACAAGAGG+TGG | 0.582880 | 1.4:-1822811 | None:intergenic |
| ACTGCCCTTTCTCCTATCAC+TGG | 0.583168 | 1.4:+1822865 | MS.gene90702:CDS |
| GAGCAAACTGTCCATTTGGA+AGG | 0.583763 | 1.4:+1820728 | MS.gene90702:CDS |
| AGAAAAGGACCAACAACAAG+AGG | 0.606682 | 1.4:-1822814 | None:intergenic |
| ACGATGTGTAAATCAATCTA+CGG | 0.609135 | 1.4:-1822474 | None:intergenic |
| GAGTAAGTACTTACTTTGTG+GGG | 0.613168 | 1.4:-1823277 | None:intergenic |
| CATTATTCGATTATAAAGCA+AGG | 0.613434 | 1.4:+1823104 | MS.gene90702:CDS |
| GAGAGTGAAGATGACTGGCT+GGG | 0.614181 | 1.4:+1822576 | MS.gene90702:CDS |
| AGCATATGGAAGTAGAAGGG+AGG | 0.617663 | 1.4:+1823177 | MS.gene90702:CDS |
| CCAACAGCTCTCATCCCACA+AGG | 0.627961 | 1.4:-1822533 | None:intergenic |
| CATCATGAAAGCATGCCTCA+AGG | 0.630278 | 1.4:+1822441 | MS.gene90702:CDS |
| TCCTTGGACTCAAAATCCAT+AGG | 0.646498 | 1.4:-1820822 | None:intergenic |
| CCTTGTGGGATGAGAGCTGT+TGG | 0.652347 | 1.4:+1822533 | MS.gene90702:CDS |
| AAGGACCAACAACAAGAGGT+GGG | 0.653580 | 1.4:-1822810 | None:intergenic |
| AGGGCAGTGATTAGGCTAGG+TGG | 0.683144 | 1.4:-1822850 | None:intergenic |
| CTTCACAAAGATCATCCAAG+TGG | 0.692415 | 1.4:-1823136 | None:intergenic |
| CAACAGCTCTCATCCCACAA+GGG | 0.696587 | 1.4:-1822532 | None:intergenic |
| CGAAACTGTTTGCGTCACAG+GGG | 0.700520 | 1.4:+1820378 | MS.gene90702:CDS |
| GTCATGAGACTCATGGAGCG+CGG | 0.701087 | 1.4:+1820427 | MS.gene90702:CDS |
| CAAAACTACCTTCTTCACCA+AGG | 0.706268 | 1.4:-1820755 | None:intergenic |
| AGTAACGTTTAGGGTTCCGG+CGG | 0.708151 | 1.4:-1822497 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAAAAAAATCAGTAAA+AGG | - | chr1.4:1822133-1822152 | None:intergenic | 10.0% |
| !! | TTAAATTATAAAACTCTTAT+AGG | - | chr1.4:1822652-1822671 | None:intergenic | 10.0% |
| !!! | ATAAAAGTGAATTAAAATTT+TGG | + | chr1.4:1821780-1821799 | MS.gene90702:intron | 10.0% |
| !!! | ATTTTGATTAAAAAAATTGT+TGG | - | chr1.4:1820556-1820575 | None:intergenic | 10.0% |
| !!! | TATAGTTTGATTTATAATTT+TGG | - | chr1.4:1821966-1821985 | None:intergenic | 10.0% |
| !!! | TTTTTATAAACTTTAGTATA+TGG | - | chr1.4:1821927-1821946 | None:intergenic | 10.0% |
| !! | AAAAAAATGATTAGATTGTT+AGG | - | chr1.4:1822030-1822049 | None:intergenic | 15.0% |
| !! | AAAACTATAACTGAAAATTA+TGG | - | chr1.4:1821712-1821731 | None:intergenic | 15.0% |
| !! | AAAATGTACACATAAATAAT+AGG | + | chr1.4:1823324-1823343 | MS.gene90702:intron | 15.0% |
| !! | ATGCATATAAAATTAAAGTA+TGG | - | chr1.4:1820859-1820878 | None:intergenic | 15.0% |
| !! | TGCATATAAAATTAAAGTAT+GGG | - | chr1.4:1820858-1820877 | None:intergenic | 15.0% |
| !!! | AATTAAAATTTTGGTGATAA+TGG | + | chr1.4:1821789-1821808 | MS.gene90702:intron | 15.0% |
| !!! | ACAATCTAATCATTTTTTTT+TGG | + | chr1.4:1822031-1822050 | MS.gene90702:intron | 15.0% |
| !!! | ATACATTATTTAAAGTGATT+AGG | - | chr1.4:1822681-1822700 | None:intergenic | 15.0% |
| !!! | GTTTTAATACCATTATATAT+TGG | - | chr1.4:1821104-1821123 | None:intergenic | 15.0% |
| !! | ACCATTAATCCAATATATAA+TGG | + | chr1.4:1821092-1821111 | MS.gene90702:intron | 20.0% |
| !! | ACCATTATATATTGGATTAA+TGG | - | chr1.4:1821096-1821115 | None:intergenic | 20.0% |
| !! | AGCATAATGTAATTTATTAG+GGG | + | chr1.4:1821386-1821405 | MS.gene90702:intron | 20.0% |
| !! | ATCTCTTGTGAAAAATTTAT+TGG | + | chr1.4:1822088-1822107 | MS.gene90702:intron | 20.0% |
| !! | ATTTGAATTTAAATACAGCT+TGG | + | chr1.4:1823455-1823474 | MS.gene90702:CDS | 20.0% |
| !! | CAAAATTCAAGAAAATTGAT+GGG | + | chr1.4:1820630-1820649 | MS.gene90702:intron | 20.0% |
| !! | GAGCATAATGTAATTTATTA+GGG | + | chr1.4:1821385-1821404 | MS.gene90702:intron | 20.0% |
| !! | GCTTAAATTCCTTAAAAAAT+TGG | + | chr1.4:1822948-1822967 | MS.gene90702:intron | 20.0% |
| !! | GTTATTATCAATGTAGTAAT+GGG | - | chr1.4:1821033-1821052 | None:intergenic | 20.0% |
| !! | TCAAAATTCAAGAAAATTGA+TGG | + | chr1.4:1820629-1820648 | MS.gene90702:intron | 20.0% |
| !! | TGAGCATAATGTAATTTATT+AGG | + | chr1.4:1821384-1821403 | MS.gene90702:intron | 20.0% |
| !! | TTATAAACTTTAGTATATGG+TGG | - | chr1.4:1821924-1821943 | None:intergenic | 20.0% |
| !!! | ATTAGTCTAATTGTTCAAAT+TGG | + | chr1.4:1823358-1823377 | MS.gene90702:intron | 20.0% |
| !!! | ATTGTTCAAATTGGATTTTT+AGG | + | chr1.4:1823367-1823386 | MS.gene90702:intron | 20.0% |
| !!! | GAATCATTTCCAATTTTTTA+AGG | - | chr1.4:1822960-1822979 | None:intergenic | 20.0% |
| !!! | GTCACAACTATTTTTTTAAA+GGG | + | chr1.4:1821600-1821619 | MS.gene90702:intron | 20.0% |
| !!! | GTTTATATATACACACATTT+TGG | + | chr1.4:1820652-1820671 | MS.gene90702:intron | 20.0% |
| !!! | TGTCACAACTATTTTTTTAA+AGG | + | chr1.4:1821599-1821618 | MS.gene90702:intron | 20.0% |
| ! | AAATATAAAAAAAAGGGACC+TGG | - | chr1.4:1820481-1820500 | None:intergenic | 25.0% |
| ! | AAGTAAAACAAATGGTTGAT+TGG | + | chr1.4:1821820-1821839 | MS.gene90702:intron | 25.0% |
| ! | AATACATTCAGTAGAAATCA+AGG | + | chr1.4:1821312-1821331 | MS.gene90702:intron | 25.0% |
| ! | AATATAAAAAAAAGGGACCT+GGG | - | chr1.4:1820480-1820499 | None:intergenic | 25.0% |
| ! | ACTTCAAATGTTTAATTGAG+AGG | + | chr1.4:1821474-1821493 | MS.gene90702:intron | 25.0% |
| ! | AGTAACTACTAAAATGGAAA+CGG | - | chr1.4:1821071-1821090 | None:intergenic | 25.0% |
| ! | ATACATTCAGTAGAAATCAA+GGG | + | chr1.4:1821313-1821332 | MS.gene90702:intron | 25.0% |
| ! | CATTATTCGATTATAAAGCA+AGG | + | chr1.4:1823104-1823123 | MS.gene90702:CDS | 25.0% |
| ! | GGTTATTATCAATGTAGTAA+TGG | - | chr1.4:1821034-1821053 | None:intergenic | 25.0% |
| ! | TTTATAAATGTACCAGTGAT+AGG | - | chr1.4:1822880-1822899 | None:intergenic | 25.0% |
| !! | AATTGTTACTTAGTAGTAGA+CGG | - | chr1.4:1823038-1823057 | None:intergenic | 25.0% |
| !! | GAAGTTTTACATAAACTGTA+TGG | - | chr1.4:1821459-1821478 | None:intergenic | 25.0% |
| !!! | AGTTTTGATGAAGCAATTAA+AGG | + | chr1.4:1820771-1820790 | MS.gene90702:CDS | 25.0% |
| !!! | GTTTTGATGAAGCAATTAAA+GGG | + | chr1.4:1820772-1820791 | MS.gene90702:CDS | 25.0% |
| !!! | TAAAATTTTGGTGATAATGG+TGG | + | chr1.4:1821792-1821811 | MS.gene90702:intron | 25.0% |
| AACCTAGTATAACATCCTTT+GGG | + | chr1.4:1820977-1820996 | MS.gene90702:intron | 30.0% | |
| AAGGGTTAATGACAATGATT+TGG | + | chr1.4:1821618-1821637 | MS.gene90702:intron | 30.0% | |
| AATAATGCTAGTTATCCTGA+TGG | - | chr1.4:1821362-1821381 | None:intergenic | 30.0% | |
| AATAGCCTCTTCATTATTCA+AGG | + | chr1.4:1821870-1821889 | MS.gene90702:intron | 30.0% | |
| ACAATTGATCGAAGATAACA+TGG | + | chr1.4:1823052-1823071 | MS.gene90702:intron | 30.0% | |
| ACGATGTGTAAATCAATCTA+CGG | - | chr1.4:1822477-1822496 | None:intergenic | 30.0% | |
| AGGGTTAATGACAATGATTT+GGG | + | chr1.4:1821619-1821638 | MS.gene90702:intron | 30.0% | |
| AGGTGTATAACAATATGGTT+GGG | + | chr1.4:1822339-1822358 | MS.gene90702:intron | 30.0% | |
| AGTACAGGTGTATAACAATA+TGG | + | chr1.4:1822334-1822353 | MS.gene90702:intron | 30.0% | |
| AGTAGTGGTGTATAACAATA+TGG | + | chr1.4:1822276-1822295 | MS.gene90702:intron | 30.0% | |
| ATAGCCTCTTCATTATTCAA+GGG | + | chr1.4:1821871-1821890 | MS.gene90702:intron | 30.0% | |
| ATCAAAGAAGATCAAAGACT+TGG | + | chr1.4:1823431-1823450 | MS.gene90702:CDS | 30.0% | |
| ATGGTGAGTAACTACTAAAA+TGG | - | chr1.4:1821077-1821096 | None:intergenic | 30.0% | |
| ATGTAATTTATTAGGGGTGA+TGG | + | chr1.4:1821392-1821411 | MS.gene90702:intron | 30.0% | |
| ATTGATACATGCAGAGAAAA+AGG | + | chr1.4:1823498-1823517 | MS.gene90702:CDS | 30.0% | |
| CAAGAATATTCCAGATCAAT+TGG | + | chr1.4:1823392-1823411 | MS.gene90702:CDS | 30.0% | |
| GAAAATGATAAACATCCCAA+AGG | - | chr1.4:1820995-1821014 | None:intergenic | 30.0% | |
| GAAACGGTTCATACATTTAA+TGG | - | chr1.4:1821055-1821074 | None:intergenic | 30.0% | |
| GAACACAAATAGAACAAAGT+TGG | - | chr1.4:1821515-1821534 | None:intergenic | 30.0% | |
| TAAAACAAATGGTTGATTGG+TGG | + | chr1.4:1821823-1821842 | MS.gene90702:intron | 30.0% | |
| TAATGGGATGGTTACAAAAA+AGG | - | chr1.4:1821017-1821036 | None:intergenic | 30.0% | |
| TCAAAGAAGATCAAAGACTT+GGG | + | chr1.4:1823432-1823451 | MS.gene90702:CDS | 30.0% | |
| TCTATCATCTCATATATGCA+TGG | + | chr1.4:1820878-1820897 | MS.gene90702:intron | 30.0% | |
| TGAATTTAAATACAGCTTGG+AGG | + | chr1.4:1823458-1823477 | MS.gene90702:CDS | 30.0% | |
| TGAGTAAGTACTTACTTTGT+GGG | - | chr1.4:1823281-1823300 | None:intergenic | 30.0% | |
| TGGTTGAGAAGTAAAACAAA+TGG | + | chr1.4:1821812-1821831 | MS.gene90702:intron | 30.0% | |
| TTCAACATCATCTAGTGATA+AGG | + | chr1.4:1821532-1821551 | MS.gene90702:intron | 30.0% | |
| TTGAGTAAGTACTTACTTTG+TGG | - | chr1.4:1823282-1823301 | None:intergenic | 30.0% | |
| TTGATACATGCAGAGAAAAA+GGG | + | chr1.4:1823499-1823518 | MS.gene90702:CDS | 30.0% | |
| TTGATCTTCAGTAACGTTTA+GGG | - | chr1.4:1822509-1822528 | None:intergenic | 30.0% | |
| TTTGATCTTCAGTAACGTTT+AGG | - | chr1.4:1822510-1822529 | None:intergenic | 30.0% | |
| ! | ATTGGTGCTTTAACAAATTC+AGG | - | chr1.4:1823531-1823550 | None:intergenic | 30.0% |
| ! | CATATTCTTGTTTGAGCATA+TGG | + | chr1.4:1823163-1823182 | MS.gene90702:CDS | 30.0% |
| ! | GGAAATTCAATATTTTGCGA+GGG | - | chr1.4:1820921-1820940 | None:intergenic | 30.0% |
| ! | GTTAAAGCACCAATAAGTAA+TGG | + | chr1.4:1823537-1823556 | MS.gene90702:CDS | 30.0% |
| ! | TGGAAATTCAATATTTTGCG+AGG | - | chr1.4:1820922-1820941 | None:intergenic | 30.0% |
| ! | TTATCAATGTAGTAATGGGA+TGG | - | chr1.4:1821029-1821048 | None:intergenic | 30.0% |
| !! | ATGGTTTGTTAGATTCTCTA+TGG | + | chr1.4:1821411-1821430 | MS.gene90702:intron | 30.0% |
| !!! | TTTTGTTTCTAAGACACTTG+CGG | + | chr1.4:1822732-1822751 | MS.gene90702:CDS | 30.0% |
| AATCCCCTTGAATAATGAAG+AGG | - | chr1.4:1821878-1821897 | None:intergenic | 35.0% | |
| AATTAAAGTATGGGTACCTC+AGG | - | chr1.4:1820849-1820868 | None:intergenic | 35.0% | |
| ATCCCAAAGGATGTTATACT+AGG | - | chr1.4:1820982-1821001 | None:intergenic | 35.0% | |
| ATGATCAAGCCTACCATAAA+AGG | + | chr1.4:1822409-1822428 | MS.gene90702:CDS | 35.0% | |
| ATTAAAGTATGGGTACCTCA+GGG | - | chr1.4:1820848-1820867 | None:intergenic | 35.0% | |
| ATTCAGTAGAAATCAAGGGT+CGG | + | chr1.4:1821317-1821336 | MS.gene90702:intron | 35.0% | |
| CAACCTAGTATAACATCCTT+TGG | + | chr1.4:1820976-1820995 | MS.gene90702:intron | 35.0% | |
| CACTATGAAGCAATGTTCTT+TGG | - | chr1.4:1820942-1820961 | None:intergenic | 35.0% | |
| CAGGTGTATAACAATATGGT+TGG | + | chr1.4:1822338-1822357 | MS.gene90702:intron | 35.0% | |
| CTACGTAAATGAGATTGAGA+TGG | + | chr1.4:1821670-1821689 | MS.gene90702:intron | 35.0% | |
| CTGCTGCAAAAAGAAATATG+TGG | + | chr1.4:1822162-1822181 | MS.gene90702:intron | 35.0% | |
| GAATGCAGAAAACTTGAAGA+AGG | + | chr1.4:1820674-1820693 | MS.gene90702:intron | 35.0% | |
| GAGTAAGTACTTACTTTGTG+GGG | - | chr1.4:1823280-1823299 | None:intergenic | 35.0% | |
| GGCATAGTTGGAATAAGAAA+AGG | - | chr1.4:1822832-1822851 | None:intergenic | 35.0% | |
| TAGCCTCTTCATTATTCAAG+GGG | + | chr1.4:1821872-1821891 | MS.gene90702:intron | 35.0% | |
| TAGTGATAAGGACAGTGAAT+AGG | + | chr1.4:1821544-1821563 | MS.gene90702:intron | 35.0% | |
| TGTGTGACACCATTACTTAT+TGG | - | chr1.4:1823549-1823568 | None:intergenic | 35.0% | |
| TTGAGCATATGGAAGTAGAA+GGG | + | chr1.4:1823174-1823193 | MS.gene90702:CDS | 35.0% | |
| TTGTGCATGATCTTAAGTAG+TGG | + | chr1.4:1822261-1822280 | MS.gene90702:intron | 35.0% | |
| TTTGAGCATATGGAAGTAGA+AGG | + | chr1.4:1823173-1823192 | MS.gene90702:CDS | 35.0% | |
| ! | AATCAATCTACGGACAGTTT+TGG | - | chr1.4:1822467-1822486 | None:intergenic | 35.0% |
| ! | GTTTGTTAGATTCTCTATGG+TGG | + | chr1.4:1821414-1821433 | MS.gene90702:intron | 35.0% |
| !! | ATATTTTTATAGCTGCCCAG+TGG | - | chr1.4:1822232-1822251 | None:intergenic | 35.0% |
| !! | ATGGTTTTGCACAAATTTGC+AGG | + | chr1.4:1823071-1823090 | MS.gene90702:intron | 35.0% |
| !! | TATTTTTATAGCTGCCCAGT+GGG | - | chr1.4:1822231-1822250 | None:intergenic | 35.0% |
| ACAAGAGATGATCAGTGTTC+AGG | - | chr1.4:1822077-1822096 | None:intergenic | 40.0% | |
| AGAAAAGGACCAACAACAAG+AGG | - | chr1.4:1822817-1822836 | None:intergenic | 40.0% | |
| ATGTACCAGTGATAGGAGAA+AGG | - | chr1.4:1822873-1822892 | None:intergenic | 40.0% | |
| CAAAACTACCTTCTTCACCA+AGG | - | chr1.4:1820758-1820777 | None:intergenic | 40.0% | |
| CAAAGAGCAAACTGTCCATT+TGG | + | chr1.4:1820724-1820743 | MS.gene90702:CDS | 40.0% | |
| CTTCACAAAGATCATCCAAG+TGG | - | chr1.4:1823139-1823158 | None:intergenic | 40.0% | |
| GAAGTCAATCTTGTGCTCTT+TGG | - | chr1.4:1822779-1822798 | None:intergenic | 40.0% | |
| GATCATCCAAGTGGACAAAT+TGG | - | chr1.4:1823130-1823149 | None:intergenic | 40.0% | |
| GCACAAATTTGCAGGAAATG+AGG | + | chr1.4:1823079-1823098 | MS.gene90702:intron | 40.0% | |
| TAAATTAGTCGTGATCCCGT+CGG | - | chr1.4:1821213-1821232 | None:intergenic | 40.0% | |
| TCCTTGGACTCAAAATCCAT+AGG | - | chr1.4:1820825-1820844 | None:intergenic | 40.0% | |
| TGAAGATCAAAAGCCCTTGT+GGG | + | chr1.4:1822519-1822538 | MS.gene90702:CDS | 40.0% | |
| TGTACCAGTGATAGGAGAAA+GGG | - | chr1.4:1822872-1822891 | None:intergenic | 40.0% | |
| TTCAGTAGAAATCAAGGGTC+GGG | + | chr1.4:1821318-1821337 | MS.gene90702:intron | 40.0% | |
| TTCCTTCCACAATTCAAGAG+AGG | + | chr1.4:1821249-1821268 | MS.gene90702:intron | 40.0% | |
| TTGTGGGGATATTGTACTCT+GGG | - | chr1.4:1823265-1823284 | None:intergenic | 40.0% | |
| TTTGTGGGGATATTGTACTC+TGG | - | chr1.4:1823266-1823285 | None:intergenic | 40.0% | |
| ! | AGTCATTTGTTAGAACTGCC+AGG | + | chr1.4:1820699-1820718 | MS.gene90702:CDS | 40.0% |
| ! | ATTTCGCTAGCTTATCCATC+AGG | + | chr1.4:1821344-1821363 | MS.gene90702:intron | 40.0% |
| ! | GAAGCAATTAAAGGGTGTAC+TGG | + | chr1.4:1820780-1820799 | MS.gene90702:CDS | 40.0% |
| ! | GATGTCTAGCACTCCTTTTA+TGG | - | chr1.4:1822425-1822444 | None:intergenic | 40.0% |
| ! | GTGTACTGGAGTTTTTCATG+TGG | + | chr1.4:1820794-1820813 | MS.gene90702:CDS | 40.0% |
| ! | TCTAGCACTCCTTTTATGGT+AGG | - | chr1.4:1822421-1822440 | None:intergenic | 40.0% |
| ! | TGTTACTTAGTAGTAGACGG+TGG | - | chr1.4:1823035-1823054 | None:intergenic | 40.0% |
| ! | TTCAGTAACGTTTAGGGTTC+CGG | - | chr1.4:1822503-1822522 | None:intergenic | 40.0% |
| ! | TTTTCATGTGGCTACACCTA+TGG | + | chr1.4:1820806-1820825 | MS.gene90702:CDS | 40.0% |
| !! | ACCTATGGATTTTGAGTCCA+AGG | + | chr1.4:1820821-1820840 | MS.gene90702:CDS | 40.0% |
| AAAGGACCAACAACAAGAGG+TGG | - | chr1.4:1822814-1822833 | None:intergenic | 45.0% | |
| AAATTAGTCGTGATCCCGTC+GGG | - | chr1.4:1821212-1821231 | None:intergenic | 45.0% | |
| AAGGACCAACAACAAGAGGT+GGG | - | chr1.4:1822813-1822832 | None:intergenic | 45.0% | |
| ACAGTGAATAGGTACCTAGG+TGG | + | chr1.4:1821555-1821574 | MS.gene90702:intron | 45.0% | |
| AGCATATGGAAGTAGAAGGG+AGG | + | chr1.4:1823177-1823196 | MS.gene90702:CDS | 45.0% | |
| AGGACAGTGAATAGGTACCT+AGG | + | chr1.4:1821552-1821571 | MS.gene90702:intron | 45.0% | |
| ATTAGGCTAGGTGGCATAGT+TGG | - | chr1.4:1822844-1822863 | None:intergenic | 45.0% | |
| CACCTCTCTTGAATTGTGGA+AGG | - | chr1.4:1821254-1821273 | None:intergenic | 45.0% | |
| CTCACAAGCTCCAATTGATC+TGG | - | chr1.4:1823405-1823424 | None:intergenic | 45.0% | |
| CTGAAGATCAAAAGCCCTTG+TGG | + | chr1.4:1822518-1822537 | MS.gene90702:CDS | 45.0% | |
| GAGCAAACTGTCCATTTGGA+AGG | + | chr1.4:1820728-1820747 | MS.gene90702:CDS | 45.0% | |
| GTTGGGAATCGAGTCTGAAA+TGG | + | chr1.4:1822356-1822375 | MS.gene90702:intron | 45.0% | |
| TAGGAGAAAGGGCAGTGATT+AGG | - | chr1.4:1822861-1822880 | None:intergenic | 45.0% | |
| TTGATTTACACATCGTCCGC+CGG | + | chr1.4:1822481-1822500 | MS.gene90702:CDS | 45.0% | |
| TTGTGCACGATCTTGAGTAC+AGG | + | chr1.4:1822319-1822338 | MS.gene90702:intron | 45.0% | |
| ! | ATCATCCCACCTCTTGTTGT+TGG | + | chr1.4:1822805-1822824 | MS.gene90702:CDS | 45.0% |
| ! | ATGGCTTGTCATGAGACTCA+TGG | + | chr1.4:1820420-1820439 | MS.gene90702:CDS | 45.0% |
| ! | CATCATGAAAGCATGCCTCA+AGG | + | chr1.4:1822441-1822460 | MS.gene90702:CDS | 45.0% |
| ! | GGAGTGATGTTGAGTTTTGC+AGG | + | chr1.4:1822554-1822573 | MS.gene90702:CDS | 45.0% |
| ! | TGGCAAAGATGGTGATGACA+TGG | + | chr1.4:1821575-1821594 | MS.gene90702:intron | 45.0% |
| !! | AAGAGAGGTGCCACAATACA+AGG | + | chr1.4:1821264-1821283 | MS.gene90702:intron | 45.0% |
| !! | AGAGAGGTGCCACAATACAA+GGG | + | chr1.4:1821265-1821284 | MS.gene90702:intron | 45.0% |
| !! | ACATAAAAAATATAAAAAAA+AGG | - | chr1.4:1820488-1820507 | None:intergenic | 5.0% |
| !! | CATAAAAAATATAAAAAAAA+GGG | - | chr1.4:1820487-1820506 | None:intergenic | 5.0% |
| AAAAAAAGGGACCTGGGTCG+CGG | - | chr1.4:1820474-1820493 | None:intergenic | 50.0% | |
| AAGGCTGACCTTGGTGAAGA+AGG | + | chr1.4:1820747-1820766 | MS.gene90702:CDS | 50.0% | |
| ACCAAGGTCAGCCTTCCAAA+TGG | - | chr1.4:1820742-1820761 | None:intergenic | 50.0% | |
| ACTGCCCTTTCTCCTATCAC+TGG | + | chr1.4:1822865-1822884 | MS.gene90702:CDS | 50.0% | |
| AGGTACCTAGGTGGCAAAGA+TGG | + | chr1.4:1821564-1821583 | MS.gene90702:intron | 50.0% | |
| CAACAGCTCTCATCCCACAA+GGG | - | chr1.4:1822535-1822554 | None:intergenic | 50.0% | |
| CATCACCATCTTTGCCACCT+AGG | - | chr1.4:1821572-1821591 | None:intergenic | 50.0% | |
| CCCGAAGCAATTTATCCCGA+CGG | + | chr1.4:1821194-1821213 | MS.gene90702:intron | 50.0% | |
| CCCGTCGGGATAAATTGCTT+CGG | - | chr1.4:1821198-1821217 | None:intergenic | 50.0% | |
| CCCTGTGACGCAAACAGTTT+CGG | - | chr1.4:1820380-1820399 | None:intergenic | 50.0% | |
| CCGAAACTGTTTGCGTCACA+GGG | + | chr1.4:1820377-1820396 | MS.gene90702:CDS | 50.0% | |
| CCGAAGCAATTTATCCCGAC+GGG | + | chr1.4:1821195-1821214 | MS.gene90702:intron | 50.0% | |
| CCGTCGGGATAAATTGCTTC+GGG | - | chr1.4:1821197-1821216 | None:intergenic | 50.0% | |
| CGAAACTGTTTGCGTCACAG+GGG | + | chr1.4:1820378-1820397 | MS.gene90702:CDS | 50.0% | |
| GAAAGGGCAGTGATTAGGCT+AGG | - | chr1.4:1822856-1822875 | None:intergenic | 50.0% | |
| GCAAACACTTTCCACGAGAG+AGG | + | chr1.4:1822198-1822217 | MS.gene90702:intron | 50.0% | |
| GCAAGGCCAATTTGTCCACT+TGG | + | chr1.4:1823121-1823140 | MS.gene90702:CDS | 50.0% | |
| GTGGCACCTCTCTTGAATTG+TGG | - | chr1.4:1821258-1821277 | None:intergenic | 50.0% | |
| TCCATTTGGAAGGCTGACCT+TGG | + | chr1.4:1820738-1820757 | MS.gene90702:CDS | 50.0% | |
| TGCAGGAGAGTGAAGATGAC+TGG | + | chr1.4:1822571-1822590 | MS.gene90702:CDS | 50.0% | |
| ! | AGAGAGGATTTGCTCCCACT+GGG | + | chr1.4:1822214-1822233 | MS.gene90702:intron | 50.0% |
| ! | AGGTGCCACAATACAAGGGA+GGG | + | chr1.4:1821269-1821288 | MS.gene90702:intron | 50.0% |
| ! | AGTAACGTTTAGGGTTCCGG+CGG | - | chr1.4:1822500-1822519 | None:intergenic | 50.0% |
| ! | GACAGTTTGCTCTTTGCACC+TGG | - | chr1.4:1820720-1820739 | None:intergenic | 50.0% |
| ! | GAGAGTGAAGATGACTGGCT+GGG | + | chr1.4:1822576-1822595 | MS.gene90702:CDS | 50.0% |
| !! | TTTTGAGTCCAAGGACCCTG+AGG | + | chr1.4:1820830-1820849 | MS.gene90702:CDS | 50.0% |
| !!! | TACGGACAGTTTTGGCCTTG+AGG | - | chr1.4:1822459-1822478 | None:intergenic | 50.0% |
| ACTCATGGAGCGCGGTTACA+TGG | + | chr1.4:1820435-1820454 | MS.gene90702:CDS | 55.0% | |
| AGGGCAGTGATTAGGCTAGG+TGG | - | chr1.4:1822853-1822872 | None:intergenic | 55.0% | |
| CACTTGCGGAGCAAGAAGCA+TGG | + | chr1.4:1822746-1822765 | MS.gene90702:CDS | 55.0% | |
| CCAACAGCTCTCATCCCACA+AGG | - | chr1.4:1822536-1822555 | None:intergenic | 55.0% | |
| CCTTGTGGGATGAGAGCTGT+TGG | + | chr1.4:1822533-1822552 | MS.gene90702:CDS | 55.0% | |
| GACGCAAACAGTTTCGGCCA+TGG | - | chr1.4:1820374-1820393 | None:intergenic | 55.0% | |
| GACTGCCCTCCCTTGTATTG+TGG | - | chr1.4:1821277-1821296 | None:intergenic | 55.0% | |
| GCCGAAACTGTTTGCGTCAC+AGG | + | chr1.4:1820376-1820395 | MS.gene90702:CDS | 55.0% | |
| GGAGAGTGAAGATGACTGGC+TGG | + | chr1.4:1822575-1822594 | MS.gene90702:CDS | 55.0% | |
| GTCATGAGACTCATGGAGCG+CGG | + | chr1.4:1820427-1820446 | MS.gene90702:CDS | 55.0% | |
| TATGGGTACCTCAGGGTCCT+TGG | - | chr1.4:1820841-1820860 | None:intergenic | 55.0% | |
| TGGGAGCAAATCCTCTCTCG+TGG | - | chr1.4:1822212-1822231 | None:intergenic | 55.0% | |
| TGTTTGCGTCACAGGGGCTT+CGG | + | chr1.4:1820384-1820403 | MS.gene90702:CDS | 55.0% | |
| ! | ACAGGGGCTTCGGGTTTCAT+CGG | + | chr1.4:1820394-1820413 | MS.gene90702:CDS | 55.0% |
| ! | CTTCGGGTTTCATCGGGTCA+TGG | + | chr1.4:1820401-1820420 | MS.gene90702:CDS | 55.0% |
| ! | GAGAGAGGATTTGCTCCCAC+TGG | + | chr1.4:1822213-1822232 | MS.gene90702:intron | 55.0% |
| ! | GAGGTGCCACAATACAAGGG+AGG | + | chr1.4:1821268-1821287 | MS.gene90702:intron | 55.0% |
| GTTTGCGTCACAGGGGCTTC+GGG | + | chr1.4:1820385-1820404 | MS.gene90702:CDS | 60.0% | |
| ! | CAGGGGCTTCGGGTTTCATC+GGG | + | chr1.4:1820395-1820414 | MS.gene90702:CDS | 60.0% |
| CGAGCAACAGTCCGCGACCC+AGG | + | chr1.4:1820460-1820479 | MS.gene90702:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 1820364 | 1823575 | 1820364 | ID=MS.gene90702 |
| chr1.4 | mRNA | 1820364 | 1823575 | 1820364 | ID=MS.gene90702.t1;Parent=MS.gene90702 |
| chr1.4 | exon | 1820364 | 1820481 | 1820364 | ID=MS.gene90702.t1.exon1;Parent=MS.gene90702.t1 |
| chr1.4 | CDS | 1820364 | 1820481 | 1820364 | ID=cds.MS.gene90702.t1;Parent=MS.gene90702.t1 |
| chr1.4 | exon | 1820682 | 1820851 | 1820682 | ID=MS.gene90702.t1.exon2;Parent=MS.gene90702.t1 |
| chr1.4 | CDS | 1820682 | 1820851 | 1820682 | ID=cds.MS.gene90702.t1;Parent=MS.gene90702.t1 |
| chr1.4 | exon | 1822403 | 1822597 | 1822403 | ID=MS.gene90702.t1.exon3;Parent=MS.gene90702.t1 |
| chr1.4 | CDS | 1822403 | 1822597 | 1822403 | ID=cds.MS.gene90702.t1;Parent=MS.gene90702.t1 |
| chr1.4 | exon | 1822727 | 1822886 | 1822727 | ID=MS.gene90702.t1.exon4;Parent=MS.gene90702.t1 |
| chr1.4 | CDS | 1822727 | 1822886 | 1822727 | ID=cds.MS.gene90702.t1;Parent=MS.gene90702.t1 |
| chr1.4 | exon | 1823093 | 1823285 | 1823093 | ID=MS.gene90702.t1.exon5;Parent=MS.gene90702.t1 |
| chr1.4 | CDS | 1823093 | 1823285 | 1823093 | ID=cds.MS.gene90702.t1;Parent=MS.gene90702.t1 |
| chr1.4 | exon | 1823389 | 1823575 | 1823389 | ID=MS.gene90702.t1.exon6;Parent=MS.gene90702.t1 |
| chr1.4 | CDS | 1823389 | 1823575 | 1823389 | ID=cds.MS.gene90702.t1;Parent=MS.gene90702.t1 |
| Gene Sequence |
| Protein sequence |
