AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene90854

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90854.t1 MTR_1g115405 96.825 252 8 0 1 252 1 252 1.35e-175 483
MS.gene90854.t1 MTR_7g023350 87.302 252 32 0 1 252 1 252 6.52e-152 423
MS.gene90854.t1 MTR_4g063090 74.206 252 65 0 1 252 1 252 5.09e-127 360
MS.gene90854.t1 MTR_7g103030 66.667 252 82 2 1 252 1 250 8.98e-107 309
MS.gene90854.t1 MTR_1g077540 54.264 258 112 1 1 252 1 258 7.41e-96 281
MS.gene90854.t1 MTR_2g101370 58.300 247 101 2 6 252 5 249 9.22e-93 273
MS.gene90854.t1 MTR_8g013680 57.085 247 104 2 6 252 4 248 3.10e-91 270
MS.gene90854.t1 MTR_6g069040 56.078 255 109 1 1 252 1 255 9.37e-91 268
MS.gene90854.t1 MTR_1g006490 51.417 247 115 3 5 251 3 244 4.74e-82 246
MS.gene90854.t1 MTR_5g012810 54.032 248 111 2 5 252 3 247 1.15e-81 245
MS.gene90854.t1 MTR_1g006590 50.206 243 116 3 5 247 3 240 2.14e-77 234
MS.gene90854.t1 MTR_2g060360 39.583 240 138 2 12 251 10 242 2.24e-55 178
MS.gene90854.t1 MTR_2g094270 39.919 248 124 7 13 240 32 274 1.65e-40 141
MS.gene90854.t1 MTR_7g101190 40.000 230 122 6 21 235 39 267 1.26e-37 134
MS.gene90854.t1 MTR_3g118010 38.723 235 118 7 21 238 37 262 6.16e-35 126
MS.gene90854.t1 MTR_4g059390 36.290 248 134 7 12 240 30 272 2.89e-33 122
MS.gene90854.t1 MTR_5g063930 37.344 241 130 7 16 248 32 259 5.54e-32 118
MS.gene90854.t1 MTR_4g415300 37.295 244 126 8 13 239 48 281 1.51e-31 117
MS.gene90854.t1 MTR_5g010150 35.246 244 138 7 10 239 41 278 1.51e-30 115
MS.gene90854.t1 MTR_8g098375 34.167 240 139 6 10 235 41 275 1.86e-30 115
MS.gene90854.t1 MTR_1g095070 42.541 181 92 4 69 238 25 204 3.16e-30 112
MS.gene90854.t1 MTR_2g094270 38.785 214 109 6 13 209 32 240 6.56e-29 110
MS.gene90854.t1 MTR_3g070210 34.016 244 141 7 10 239 44 281 2.31e-28 109
MS.gene90854.t1 MTR_5g082070 34.156 243 133 7 10 234 44 277 3.59e-28 108
MS.gene90854.t1 MTR_3g008920 35.470 234 134 7 20 250 25 244 1.69e-24 98.6
MS.gene90854.t1 MTR_4g084880 33.333 234 147 3 20 251 34 260 6.79e-24 97.4
MS.gene90854.t1 MTR_1g097840 32.895 228 133 7 25 246 78 291 1.08e-22 94.7
MS.gene90854.t1 MTR_2g017620 32.479 234 145 6 20 250 23 246 1.54e-22 93.2
MS.gene90854.t1 MTR_5g079570 32.877 219 133 3 20 235 39 246 1.86e-22 93.2
MS.gene90854.t1 MTR_2g017620 32.479 234 145 6 20 250 37 260 2.34e-22 93.2
MS.gene90854.t1 MTR_7g010650 31.878 229 138 5 21 245 37 251 6.58e-22 92.0
MS.gene90854.t1 MTR_2g017620 34.286 175 111 3 78 251 9 180 4.25e-21 87.8
MS.gene90854.t1 MTR_2g104940 28.634 227 154 3 25 251 84 302 9.30e-21 89.4
MS.gene90854.t1 MTR_8g087710 31.034 232 151 5 20 250 38 261 1.13e-20 88.6
MS.gene90854.t1 MTR_2g017590 31.466 232 150 5 20 250 35 258 2.70e-20 87.4
MS.gene90854.t1 MTR_1g095070 39.877 163 78 5 69 216 25 182 3.13e-20 85.9
MS.gene90854.t1 MTR_4g006730 29.358 218 146 3 25 242 79 288 3.77e-20 87.8
MS.gene90854.t1 MTR_2g017660 30.734 218 144 3 20 237 38 248 2.87e-19 84.7
MS.gene90854.t1 MTR_4g006730 28.708 209 141 3 34 242 1 201 3.82e-18 80.9
MS.gene90854.t1 MTR_3g070210 31.111 225 128 7 10 216 44 259 3.86e-18 81.6
MS.gene90854.t1 MTR_4g059390 33.918 171 96 5 21 179 39 204 5.94e-18 79.7
MS.gene90854.t1 MTR_4g006630 28.708 209 141 3 34 242 1 201 6.38e-18 80.1
MS.gene90854.t1 MTR_8g087720 30.638 235 150 6 20 251 37 261 9.51e-18 80.5
MS.gene90854.t1 MTR_4g415300 34.463 177 97 5 13 179 48 215 6.11e-17 77.8
MS.gene90854.t1 MTR_2g017610 33.019 212 127 7 20 227 37 237 2.17e-16 77.0
MS.gene90854.t1 MTR_2g017570 32.547 212 128 7 20 227 37 237 7.70e-16 75.5
MS.gene90854.t1 MTR_4g075570 32.124 193 101 8 69 239 96 280 1.05e-15 75.9
MS.gene90854.t1 MTR_5g010150 31.638 177 109 4 10 179 41 212 1.61e-15 73.6
MS.gene90854.t1 MTR_8g098375 32.530 166 100 4 10 168 41 201 3.09e-15 73.2
MS.gene90854.t1 MTR_1g070385 29.268 164 113 2 79 242 115 275 3.32e-14 72.4
MS.gene90854.t1 MTR_3g070210 31.176 170 97 5 10 168 44 204 8.39e-14 68.9
MS.gene90854.t1 MTR_4g075590 28.063 253 143 10 12 239 28 266 1.64e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90854.t1 AT4G01470 79.762 252 51 0 1 252 1 252 1.03e-144 405
MS.gene90854.t1 AT2G36830 69.444 252 76 1 1 252 1 251 6.10e-122 347
MS.gene90854.t1 AT3G26520 68.379 253 79 1 1 252 1 253 8.89e-119 339
MS.gene90854.t1 AT3G16240 54.656 247 112 0 6 252 4 250 4.55e-93 274
MS.gene90854.t1 AT1G73190 56.031 257 100 2 9 252 12 268 1.21e-90 269
MS.gene90854.t1 AT1G17810 54.297 256 105 2 9 252 12 267 7.16e-88 261
MS.gene90854.t1 AT5G47450 53.586 237 110 0 5 241 3 239 4.24e-86 256
MS.gene90854.t1 AT4G17340 52.439 246 117 0 5 250 3 248 1.96e-80 242
MS.gene90854.t1 AT2G25810 50.602 249 118 3 3 251 1 244 8.09e-77 233
MS.gene90854.t1 AT3G47440 39.914 233 139 1 19 251 21 252 3.09e-52 170
MS.gene90854.t1 AT3G54820 38.528 231 124 7 21 235 38 266 1.47e-36 130
MS.gene90854.t1 AT3G53420 39.565 230 123 6 21 235 39 267 7.06e-36 129
MS.gene90854.t1 AT3G53420 39.565 230 123 6 21 235 39 267 7.06e-36 129
MS.gene90854.t1 AT2G37170 37.395 238 133 6 13 235 29 265 3.80e-35 127
MS.gene90854.t1 AT2G37170 36.975 238 134 6 13 235 72 308 5.28e-35 128
MS.gene90854.t1 AT2G37180 36.820 239 135 6 12 235 28 265 2.42e-34 125
MS.gene90854.t1 AT5G60660 37.768 233 129 6 21 238 39 270 8.04e-34 124
MS.gene90854.t1 AT4G35100 37.872 235 120 7 21 238 38 263 6.05e-33 121
MS.gene90854.t1 AT4G35100 37.872 235 120 7 21 238 38 263 6.05e-33 121
MS.gene90854.t1 AT2G39010 37.551 245 125 8 12 235 29 266 6.84e-33 121
MS.gene90854.t1 AT2G16850 38.723 235 118 8 21 238 36 261 1.32e-32 120
MS.gene90854.t1 AT4G00430 36.032 247 131 8 10 239 42 278 1.48e-30 115
MS.gene90854.t1 AT4G23400 36.207 232 129 7 21 239 53 278 1.49e-29 112
MS.gene90854.t1 AT1G01620 35.246 244 131 8 13 239 44 277 8.84e-29 110
MS.gene90854.t1 AT2G45960 34.711 242 132 7 10 234 41 273 2.49e-28 109
MS.gene90854.t1 AT3G61430 35.146 239 129 7 13 234 44 273 2.71e-28 109
MS.gene90854.t1 AT3G61430 35.146 239 129 7 13 234 44 273 2.71e-28 109
MS.gene90854.t1 AT1G01620 38.071 197 99 7 60 239 15 205 2.63e-26 102
MS.gene90854.t1 AT5G37810 32.051 234 144 3 21 250 43 265 9.65e-23 94.4
MS.gene90854.t1 AT1G80760 29.536 237 149 5 21 252 80 303 1.56e-21 91.7
MS.gene90854.t1 AT5G37820 34.595 185 117 2 68 250 119 301 1.79e-21 91.7
MS.gene90854.t1 AT5G37820 34.595 185 117 2 68 250 83 265 2.67e-21 90.5
MS.gene90854.t1 AT4G18910 28.689 244 148 6 20 250 51 281 2.09e-20 88.2
MS.gene90854.t1 AT4G19030 30.417 240 149 6 20 250 54 284 8.28e-20 86.7
MS.gene90854.t1 AT4G10380 30.088 226 150 4 21 246 78 295 9.68e-20 86.7
MS.gene90854.t1 AT1G52180 55.556 72 32 0 145 216 53 124 6.56e-19 80.5
MS.gene90854.t1 AT2G39010 37.427 171 86 6 12 168 29 192 1.89e-18 81.6
MS.gene90854.t1 AT2G45960 32.143 224 126 7 10 216 41 255 4.35e-18 81.6
MS.gene90854.t1 AT2G45960 32.143 224 126 7 10 216 41 255 4.46e-18 82.0
MS.gene90854.t1 AT1G31885 31.004 229 130 7 20 234 42 256 3.65e-17 79.7
MS.gene90854.t1 AT3G06100 30.631 222 145 6 16 237 43 255 6.03e-17 78.6
MS.gene90854.t1 AT1G31885 34.807 181 99 6 67 234 28 202 3.82e-16 76.3
MS.gene90854.t1 AT3G06100 30.939 181 123 2 57 237 29 207 8.11e-16 74.7
MS.gene90854.t1 AT4G00430 33.728 169 93 5 10 168 42 201 4.58e-15 72.4
MS.gene90854.t1 AT3G06100 33.083 133 87 2 105 237 44 174 3.18e-11 61.2

Find 70 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGTTGGTGCAAATATTTC+TGG 0.152046 1.4:-87566330 MS.gene90854:CDS
TATTGGGTTGGCCCATTTAT+TGG 0.173975 1.4:-87565353 MS.gene90854:CDS
GGACTCATCATTGGGTCTAT+TGG 0.245534 1.4:-87565370 MS.gene90854:CDS
GCATCATTATCTCATGCATT+TGG 0.272168 1.4:-87566369 MS.gene90854:CDS
ACACCAACATTCCCTCTCTT+TGG 0.279029 1.4:+87565512 None:intergenic
GCAGTAGCTGAACCAATAAA+TGG 0.292987 1.4:+87565341 None:intergenic
TCTAGAAGTCACTATTTGAT+AGG 0.300485 1.4:+87565270 None:intergenic
GACTCATCATTGGGTCTATT+GGG 0.324641 1.4:-87565369 MS.gene90854:CDS
CTTTATGATAATATCTTCAT+TGG 0.331709 1.4:-87565311 MS.gene90854:CDS
GTCACATTTGGTGCTTTCAT+TGG 0.337136 1.4:-87566288 MS.gene90854:CDS
CATCATTATCTCATGCATTT+GGG 0.337895 1.4:-87566368 MS.gene90854:CDS
TAGGTGCAAATATCTTGGTT+GGG 0.348151 1.4:-87565460 MS.gene90854:CDS
ATGAACCCAGCAGTGTCATT+TGG 0.350767 1.4:-87565416 MS.gene90854:CDS
TTTGAGATTGTGATGACATT+TGG 0.368730 1.4:-87565569 MS.gene90854:CDS
CACCAACATTCCCTCTCTTT+GGG 0.379452 1.4:+87565513 None:intergenic
TTAGCAATTGGTTGTGTTGT+AGG 0.382904 1.4:-87565479 MS.gene90854:CDS
GATGCAACTATGAGACCTTC+AGG 0.383026 1.4:+87566387 None:intergenic
TATTGGATTGCACAGTTACT+TGG 0.390300 1.4:-87566234 MS.gene90854:CDS
TGAACCCAGCAGTGTCATTT+GGG 0.394408 1.4:-87565415 MS.gene90854:CDS
CTAGAAGTCACTATTTGATA+GGG 0.409762 1.4:+87565271 None:intergenic
ATTCTTCTCAATTCCTGCAC+TGG 0.411800 1.4:-87566195 MS.gene90854:CDS
TTTGGGCCTGCTGTGGTTAG+TGG 0.417445 1.4:-87565398 MS.gene90854:CDS
GTGGGACATGGACTCATCAT+TGG 0.427196 1.4:-87565379 MS.gene90854:CDS
TGTTGTAGGTGCAAATATCT+TGG 0.429108 1.4:-87565465 MS.gene90854:CDS
GCAATCTACAGAATAGCAAT+TGG 0.439083 1.4:-87566904 MS.gene90854:CDS
TCATGCATTTGGGTTATTTG+TGG 0.441279 1.4:-87566358 MS.gene90854:CDS
AGGTGCAAATATCTTGGTTG+GGG 0.447005 1.4:-87565459 MS.gene90854:CDS
CATCATTGGGTCTATTGGGT+TGG 0.461096 1.4:-87565365 MS.gene90854:CDS
GTAGGTGCAAATATCTTGGT+TGG 0.462763 1.4:-87565461 MS.gene90854:CDS
GCAGGATTGCTAGCCTCTCT+AGG 0.469123 1.4:+87566877 None:intergenic
ACATTTGGTGCTTTCATTGG+AGG 0.472714 1.4:-87566285 MS.gene90854:CDS
TGCTGGCCAAGGCTCCAGCA+TGG 0.476065 1.4:-87566803 MS.gene90854:CDS
CTGCTGTGGTTAGTGGGACA+TGG 0.476983 1.4:-87565391 MS.gene90854:CDS
ACAACACAACCAATTGCTAA+TGG 0.477910 1.4:+87565482 None:intergenic
CTTCTCAATTCCTGCACTGG+TGG 0.486622 1.4:-87566192 MS.gene90854:CDS
ATTTACCATTCCACCAGTGC+AGG 0.488777 1.4:+87566182 None:intergenic
GTGAACCCTGCAGTCACATT+TGG 0.490396 1.4:-87566300 MS.gene90854:CDS
TATAGGCCATGCTGGAGCCT+TGG 0.492628 1.4:+87566797 None:intergenic
CAGGATTGCTAGCCTCTCTA+GGG 0.497959 1.4:+87566878 None:intergenic
TTATTTGTGGCTGTTTCTGT+TGG 0.501056 1.4:-87566345 MS.gene90854:CDS
GAAGATATTATCATAAAGAA+TGG 0.501221 1.4:+87565316 None:intergenic
CAATTCCTGCACTGGTGGAA+TGG 0.501839 1.4:-87566187 MS.gene90854:intron
GCAGGCCCAAATGACACTGC+TGG 0.509169 1.4:+87565410 None:intergenic
TGGGACATGGACTCATCATT+GGG 0.515058 1.4:-87565378 MS.gene90854:CDS
GTTGTAGCACCATTAGCAAT+TGG 0.518540 1.4:-87565491 MS.gene90854:CDS
CAGTAGCTGAACCAATAAAT+GGG 0.522724 1.4:+87565342 None:intergenic
AAGGCTGCTCTAATTGCAGC+AGG 0.523234 1.4:+87566859 None:intergenic
AAAGCACCAAATGTGACTGC+AGG 0.524218 1.4:+87566294 None:intergenic
GATTGTGATGACATTTGGAT+TGG 0.530182 1.4:-87565564 MS.gene90854:CDS
TTACTCACTATAGGCCATGC+TGG 0.531666 1.4:+87566789 None:intergenic
TTGGGCCTGCTGTGGTTAGT+GGG 0.535621 1.4:-87565397 MS.gene90854:CDS
AATGGAGCTGCCACTCCTGA+AGG 0.566075 1.4:-87566402 MS.gene90854:CDS
GCAGATAAACTTACAAACAA+TGG 0.566186 1.4:-87566420 MS.gene90854:intron
ATACAAAATACTTCTCAAGA+AGG 0.568809 1.4:+87566254 None:intergenic
TATCCTCTGGTGTGTCTGTG+TGG 0.569335 1.4:-87565604 MS.gene90854:CDS
TAGAAGTCACTATTTGATAG+GGG 0.573582 1.4:+87565272 None:intergenic
CATGTCCCACTAACCACAGC+AGG 0.579587 1.4:+87565392 None:intergenic
CAGGCCCAAATGACACTGCT+GGG 0.586045 1.4:+87565411 None:intergenic
GTTGGTGCAAATATTTCTGG+TGG 0.597567 1.4:-87566327 MS.gene90854:CDS
GACCCAAAGAGAGGGAATGT+TGG 0.602021 1.4:-87565515 MS.gene90854:CDS
AGTGTCATTTGGGCCTGCTG+TGG 0.612489 1.4:-87565405 MS.gene90854:CDS
CAGCAATAGACCCAAAGAGA+GGG 0.627157 1.4:-87565523 MS.gene90854:CDS
ACAGCAATAGACCCAAAGAG+AGG 0.635119 1.4:-87565524 MS.gene90854:CDS
CATAGAGAAGAACTCTGCAA+AGG 0.637931 1.4:+87566840 None:intergenic
AAGCACCAAATGTGACTGCA+GGG 0.650741 1.4:+87566295 None:intergenic
AGCAATTGGATCCCCTAGAG+AGG 0.652271 1.4:-87566890 MS.gene90854:CDS
AACTATGAGACCTTCAGGAG+TGG 0.653111 1.4:+87566392 None:intergenic
GGTGCAAATATCTTGGTTGG+GGG 0.667124 1.4:-87565458 MS.gene90854:CDS
AGGATTGCTAGCCTCTCTAG+GGG 0.675172 1.4:+87566879 None:intergenic
ATTCCACACAGACACACCAG+AGG 0.744381 1.4:+87565601 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATCTGGATTTAAAAATGA+AGG + chr1.4:87566115-87566134 None:intergenic 20.0%
!! CTTCACTTAATATAAAATAC+AGG - chr1.4:87566040-87566059 MS.gene90854:intron 20.0%
!! CTTTATGATAATATCTTCAT+TGG - chr1.4:87566867-87566886 MS.gene90854:CDS 20.0%
!! GAAGATATTATCATAAAGAA+TGG + chr1.4:87566865-87566884 None:intergenic 20.0%
!! GAGTGTAAAAAAAATGTATA+TGG + chr1.4:87565447-87565466 None:intergenic 20.0%
!!! AAAATTTGAAGATAGTTTGT+TGG - chr1.4:87565727-87565746 MS.gene90854:intron 20.0%
!!! AAGATCTAGTATTTCTAAAA+TGG + chr1.4:87565516-87565535 None:intergenic 20.0%
!!! ACAACATTAATTTAAAGTGT+CGG - chr1.4:87566456-87566475 MS.gene90854:intron 20.0%
!!! TTATTGATTGATATTTGAGT+AGG - chr1.4:87565485-87565504 MS.gene90854:CDS 20.0%
! AAATTGGAAGACTAAATATC+TGG + chr1.4:87566130-87566149 None:intergenic 25.0%
! ATACAAAATACTTCTCAAGA+AGG + chr1.4:87565927-87565946 None:intergenic 25.0%
! ATGTGACAGAAATTATAGAA+GGG + chr1.4:87565624-87565643 None:intergenic 25.0%
! TATATAGAAGTAATTGAACG+TGG - chr1.4:87566394-87566413 MS.gene90854:CDS 25.0%
! TCAATAAAAAGATAGAGTGT+TGG - chr1.4:87565569-87565588 MS.gene90854:CDS 25.0%
! TTATCTAGATTACTCACTAT+AGG + chr1.4:87565401-87565420 None:intergenic 25.0%
!! TTGTACTTCGTTTAATTTAG+AGG + chr1.4:87566085-87566104 None:intergenic 25.0%
!! TTGTTGACATTTTCTACATA+TGG - chr1.4:87566529-87566548 MS.gene90854:intron 25.0%
!!! AAACCAGAAACTTTTGAAAT+TGG + chr1.4:87566146-87566165 None:intergenic 25.0%
!!! ATCTAGTATTTCTAAAATGG+TGG + chr1.4:87565513-87565532 None:intergenic 25.0%
!!! TCTAGTATTTCTAAAATGGT+GGG + chr1.4:87565512-87565531 None:intergenic 25.0%
!!! TCTTGAGAAGTATTTTGTAT+TGG - chr1.4:87565927-87565946 MS.gene90854:intron 25.0%
AAATTAAACCCAAATGTGAG+CGG + chr1.4:87566177-87566196 None:intergenic 30.0%
CATCATTATCTCATGCATTT+GGG - chr1.4:87565810-87565829 MS.gene90854:intron 30.0%
CTAGAAGTCACTATTTGATA+GGG + chr1.4:87566910-87566929 None:intergenic 30.0%
CTTCCAATTTCAAAAGTTTC+TGG - chr1.4:87566140-87566159 MS.gene90854:intron 30.0%
GATGTGACAGAAATTATAGA+AGG + chr1.4:87565625-87565644 None:intergenic 30.0%
GCAGATAAACTTACAAACAA+TGG - chr1.4:87565758-87565777 MS.gene90854:intron 30.0%
GTTTCAATGTCAGTAATTAG+AGG + chr1.4:87566211-87566230 None:intergenic 30.0%
TAGAAGTCACTATTTGATAG+GGG + chr1.4:87566909-87566928 None:intergenic 30.0%
TGTTGTGTTCAATGTCTTTA+TGG + chr1.4:87566442-87566461 None:intergenic 30.0%
! TGATAATGTTGAAATGGAGT+GGG - chr1.4:87566244-87566263 MS.gene90854:CDS 30.0%
! TTTGAGATTGTGATGACATT+TGG - chr1.4:87566609-87566628 MS.gene90854:intron 30.0%
!! CTAGTATTTCTAAAATGGTG+GGG + chr1.4:87565511-87565530 None:intergenic 30.0%
!!! ATGCTCATTTTTGTTTTTGC+TGG - chr1.4:87565358-87565377 MS.gene90854:CDS 30.0%
ACAACACAACCAATTGCTAA+TGG + chr1.4:87566699-87566718 None:intergenic 35.0%
CAGTAGCTGAACCAATAAAT+GGG + chr1.4:87566839-87566858 None:intergenic 35.0%
GATTGTGATGACATTTGGAT+TGG - chr1.4:87566614-87566633 MS.gene90854:intron 35.0%
GCAATCTACAGAATAGCAAT+TGG - chr1.4:87565274-87565293 MS.gene90854:CDS 35.0%
GCATCATTATCTCATGCATT+TGG - chr1.4:87565809-87565828 MS.gene90854:intron 35.0%
TAGGTGCAAATATCTTGGTT+GGG - chr1.4:87566718-87566737 MS.gene90854:intron 35.0%
TATTGGATTGCACAGTTACT+TGG - chr1.4:87565944-87565963 MS.gene90854:intron 35.0%
TCTGTTGGTGCAAATATTTC+TGG - chr1.4:87565848-87565867 MS.gene90854:intron 35.0%
TGTAAGTTTATCTGCCACAA+TGG + chr1.4:87565753-87565772 None:intergenic 35.0%
TGTTGTAGGTGCAAATATCT+TGG - chr1.4:87566713-87566732 MS.gene90854:intron 35.0%
TTAGCAATTGGTTGTGTTGT+AGG - chr1.4:87566699-87566718 MS.gene90854:intron 35.0%
! ACGACGTGATAATGTTGAAA+TGG - chr1.4:87566238-87566257 MS.gene90854:CDS 35.0%
! GTGATAATGTTGAAATGGAG+TGG - chr1.4:87566243-87566262 MS.gene90854:CDS 35.0%
! TCATGCATTTGGGTTATTTG+TGG - chr1.4:87565820-87565839 MS.gene90854:intron 35.0%
! TGACATTTTCTACATATGGC+AGG - chr1.4:87566533-87566552 MS.gene90854:intron 35.0%
!! TTATTTGTGGCTGTTTCTGT+TGG - chr1.4:87565833-87565852 MS.gene90854:intron 35.0%
!!! ATTTTTGTTTTTGCTGGCCA+AGG - chr1.4:87565364-87565383 MS.gene90854:CDS 35.0%
AGGTGCAAATATCTTGGTTG+GGG - chr1.4:87566719-87566738 MS.gene90854:intron 40.0%
ATTCTTCTCAATTCCTGCAC+TGG - chr1.4:87565983-87566002 MS.gene90854:intron 40.0%
CATAGAGAAGAACTCTGCAA+AGG + chr1.4:87565341-87565360 None:intergenic 40.0%
GACTCATCATTGGGTCTATT+GGG - chr1.4:87566809-87566828 MS.gene90854:CDS 40.0%
GCAGTAGCTGAACCAATAAA+TGG + chr1.4:87566840-87566859 None:intergenic 40.0%
GTAGGTGCAAATATCTTGGT+TGG - chr1.4:87566717-87566736 MS.gene90854:intron 40.0%
GTGTATGTGTCCAATACATG+TGG + chr1.4:87566420-87566439 None:intergenic 40.0%
GTTGTAGCACCATTAGCAAT+TGG - chr1.4:87566687-87566706 MS.gene90854:intron 40.0%
TCTATTCACCGCTCACATTT+GGG - chr1.4:87566166-87566185 MS.gene90854:intron 40.0%
TTCTATTCACCGCTCACATT+TGG - chr1.4:87566165-87566184 MS.gene90854:intron 40.0%
!! ACATTTGGTGCTTTCATTGG+AGG - chr1.4:87565893-87565912 MS.gene90854:intron 40.0%
!! AGATAGTTTGTTGGCCATTG+TGG - chr1.4:87565736-87565755 MS.gene90854:intron 40.0%
!! GTCACATTTGGTGCTTTCAT+TGG - chr1.4:87565890-87565909 MS.gene90854:intron 40.0%
!! GTTGGTGCAAATATTTCTGG+TGG - chr1.4:87565851-87565870 MS.gene90854:intron 40.0%
!! TATTGGGTTGGCCCATTTAT+TGG - chr1.4:87566825-87566844 MS.gene90854:CDS 40.0%
AACTATGAGACCTTCAGGAG+TGG + chr1.4:87565789-87565808 None:intergenic 45.0%
AAGCACCAAATGTGACTGCA+GGG + chr1.4:87565886-87565905 None:intergenic 45.0%
ACACCAACATTCCCTCTCTT+TGG + chr1.4:87566669-87566688 None:intergenic 45.0%
ACAGCAATAGACCCAAAGAG+AGG - chr1.4:87566654-87566673 MS.gene90854:intron 45.0%
ATTTACCATTCCACCAGTGC+AGG + chr1.4:87565999-87566018 None:intergenic 45.0%
CACCAACATTCCCTCTCTTT+GGG + chr1.4:87566668-87566687 None:intergenic 45.0%
CAGCAATAGACCCAAAGAGA+GGG - chr1.4:87566655-87566674 MS.gene90854:intron 45.0%
CATCATTGGGTCTATTGGGT+TGG - chr1.4:87566813-87566832 MS.gene90854:CDS 45.0%
GATGCAACTATGAGACCTTC+AGG + chr1.4:87565794-87565813 None:intergenic 45.0%
GGACTCATCATTGGGTCTAT+TGG - chr1.4:87566808-87566827 MS.gene90854:CDS 45.0%
GGTGCAAATATCTTGGTTGG+GGG - chr1.4:87566720-87566739 MS.gene90854:intron 45.0%
TGGGACATGGACTCATCATT+GGG - chr1.4:87566800-87566819 MS.gene90854:CDS 45.0%
TTACTCACTATAGGCCATGC+TGG + chr1.4:87565392-87565411 None:intergenic 45.0%
TTGAACGTGGCCACATGTAT+TGG - chr1.4:87566407-87566426 MS.gene90854:CDS 45.0%
! AAAGCACCAAATGTGACTGC+AGG + chr1.4:87565887-87565906 None:intergenic 45.0%
! ATGAACCCAGCAGTGTCATT+TGG - chr1.4:87566762-87566781 MS.gene90854:intron 45.0%
! TCAGCTTTTGCTCTATCCTC+TGG - chr1.4:87566561-87566580 MS.gene90854:intron 45.0%
!! TGAACCCAGCAGTGTCATTT+GGG - chr1.4:87566763-87566782 MS.gene90854:intron 45.0%
!!! TTGGTTGGGGGTGTTTTTGA+TGG - chr1.4:87566732-87566751 MS.gene90854:intron 45.0%
AAGGCTGCTCTAATTGCAGC+AGG + chr1.4:87565322-87565341 None:intergenic 50.0%
AGCAATTGGATCCCCTAGAG+AGG - chr1.4:87565288-87565307 MS.gene90854:CDS 50.0%
ATTCCACACAGACACACCAG+AGG + chr1.4:87566580-87566599 None:intergenic 50.0%
CTTCTCAATTCCTGCACTGG+TGG - chr1.4:87565986-87566005 MS.gene90854:intron 50.0%
GACCCAAAGAGAGGGAATGT+TGG - chr1.4:87566663-87566682 MS.gene90854:intron 50.0%
GTGAACCCTGCAGTCACATT+TGG - chr1.4:87565878-87565897 MS.gene90854:intron 50.0%
GTGGGACATGGACTCATCAT+TGG - chr1.4:87566799-87566818 MS.gene90854:CDS 50.0%
TATCCTCTGGTGTGTCTGTG+TGG - chr1.4:87566574-87566593 MS.gene90854:intron 50.0%
! AGGATTGCTAGCCTCTCTAG+GGG + chr1.4:87565302-87565321 None:intergenic 50.0%
! CAATTCCTGCACTGGTGGAA+TGG - chr1.4:87565991-87566010 MS.gene90854:intron 50.0%
! CAGGATTGCTAGCCTCTCTA+GGG + chr1.4:87565303-87565322 None:intergenic 50.0%
AATGGAGCTGCCACTCCTGA+AGG - chr1.4:87565776-87565795 MS.gene90854:intron 55.0%
CAGGCCCAAATGACACTGCT+GGG + chr1.4:87566770-87566789 None:intergenic 55.0%
CATGTCCCACTAACCACAGC+AGG + chr1.4:87566789-87566808 None:intergenic 55.0%
CTGCTGTGGTTAGTGGGACA+TGG - chr1.4:87566787-87566806 MS.gene90854:intron 55.0%
TATAGGCCATGCTGGAGCCT+TGG + chr1.4:87565384-87565403 None:intergenic 55.0%
TTGGGCCTGCTGTGGTTAGT+GGG - chr1.4:87566781-87566800 MS.gene90854:intron 55.0%
TTTGGGCCTGCTGTGGTTAG+TGG - chr1.4:87566780-87566799 MS.gene90854:intron 55.0%
! GCAGGATTGCTAGCCTCTCT+AGG + chr1.4:87565304-87565323 None:intergenic 55.0%
!! AGTGTCATTTGGGCCTGCTG+TGG - chr1.4:87566773-87566792 MS.gene90854:intron 55.0%
GCAGGCCCAAATGACACTGC+TGG + chr1.4:87566771-87566790 None:intergenic 60.0%
TGCTGGCCAAGGCTCCAGCA+TGG - chr1.4:87565375-87565394 MS.gene90854:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 87565271 87566929 87565271 ID=MS.gene90854
chr1.4 mRNA 87565271 87566929 87565271 ID=MS.gene90854.t1;Parent=MS.gene90854
chr1.4 exon 87566797 87566929 87566797 ID=MS.gene90854.t1.exon1;Parent=MS.gene90854.t1
chr1.4 CDS 87566797 87566929 87566797 ID=cds.MS.gene90854.t1;Parent=MS.gene90854.t1
chr1.4 exon 87566188 87566438 87566188 ID=MS.gene90854.t1.exon2;Parent=MS.gene90854.t1
chr1.4 CDS 87566188 87566438 87566188 ID=cds.MS.gene90854.t1;Parent=MS.gene90854.t1
chr1.4 exon 87565271 87565645 87565271 ID=MS.gene90854.t1.exon3;Parent=MS.gene90854.t1
chr1.4 CDS 87565271 87565645 87565271 ID=cds.MS.gene90854.t1;Parent=MS.gene90854.t1
Gene Sequence

>MS.gene90854

ATGGCAATCTACAGAATAGCAATTGGATCCCCTAGAGAGGCTAGCAATCCTGCTGCAATTAGAGCAGCCTTTGCAGAGTTCTTCTCTATGCTCATTTTTGTTTTTGCTGGCCAAGGCTCCAGCATGGCCTATAGTGAGTAATCTAGATAATCTCTTGAAGAGTATTACATATTCCATATACATTTTTTTTACACTCTTTTTTATACTCGTTCAATTATTGATTGATATTTGAGTAGGCCCCACCATTTTAGAAATACTAGATCTTAGATAAAGTGACATAGATGTACGATAATTTCACTCAATAAAAAGATAGAGTGTTGGAAACGAATTATTAGTTAGTTTATTGTAAGCCCTTCTATAATTTCTGTCACATCAGAAACTTATTTTGTGACATTAAAAGATAAAATTGCAGTTAGAATTTTATTTCTTATTATTTTTCAATGCTTAGCATTGTTGAAAATTTGAAGATAGTTTGTTGGCCATTGTGGCAGATAAACTTACAAACAATGGAGCTGCCACTCCTGAAGGTCTCATAGTTGCATCATTATCTCATGCATTTGGGTTATTTGTGGCTGTTTCTGTTGGTGCAAATATTTCTGGTGGACATGTGAACCCTGCAGTCACATTTGGTGCTTTCATTGGAGGAAACATTACCTTCTTGAGAAGTATTTTGTATTGGATTGCACAGTTACTTGGCGCAGTTGTTGCTTGCATTCTTCTCAATTCCTGCACTGGTGGAATGGTAAATAAATAAATTTGCACATGCATTCTTCACTTAATATAAAATACAGGTTCAAGTGTACTTTTTGTGCCTCTAAATTAAACGAAGTACAATTTTAATCCTTCATTTTTAAATCCAGATATTTAGTCTTCCAATTTCAAAAGTTTCTGGTTTTCTATTCACCGCTCACATTTGGGTTTAATTTTGTTGATGTGTCCTCTAATTACTGACATTGAAACACATTTGACGACGTGATAATGTTGAAATGGAGTGGGTTTAATTTTATCTGTATTCACATTTGTGTTTTATTAACTATAAAACACAAACTTGATCAAAAAAAGAAACTATAAAACACAAAAATCACACGCGACATTGACATGCTAATACATATAAAAATTTGAATATATAGAAGTAATTGAACGTGGCCACATGTATTGGACACATACACCATAAAGACATTGAACACAACATTAATTTAAAGTGTCGGTGTTACATAGATTATTCGCTCGCATTTAATGATTGAATTTGAATATAATTTTGTTGACATTTTCTACATATGGCAGGAAACATCAGCTTTTGCTCTATCCTCTGGTGTGTCTGTGTGGAATGCATTAGTTTTTGAGATTGTGATGACATTTGGATTGGTATATACAGTTTATGCAACAGCAATAGACCCAAAGAGAGGGAATGTTGGTGTTGTAGCACCATTAGCAATTGGTTGTGTTGTAGGTGCAAATATCTTGGTTGGGGGTGTTTTTGATGGTGCATCAATGAACCCAGCAGTGTCATTTGGGCCTGCTGTGGTTAGTGGGACATGGACTCATCATTGGGTCTATTGGGTTGGCCCATTTATTGGTTCAGCTACTGCTGCCATTCTTTATGATAATATCTTCATTGGTGATGATGCTCATGAACCCCTATCAAATAGTGACTTCTAG
Protein sequence

>MS.gene90854.t1

MAIYRIAIGSPREASNPAAIRAAFAEFFSMLIFVFAGQGSSMAYNKLTNNGAATPEGLIVASLSHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITFLRSILYWIAQLLGAVVACILLNSCTGGMETSAFALSSGVSVWNALVFEIVMTFGLVYTVYATAIDPKRGNVGVVAPLAIGCVVGANILVGGVFDGASMNPAVSFGPAVVSGTWTHHWVYWVGPFIGSATAAILYDNIFIGDDAHEPLSNSDF