AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91275


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91275.t1 MTR_2g084530 93.860 456 25 1 1 453 1 456 0.0 841
MS.gene91275.t1 MTR_4g056520 68.410 459 138 2 1 453 1 458 0.0 617
MS.gene91275.t1 MTR_4g057600 25.862 406 268 9 44 444 108 485 4.06e-34 134
MS.gene91275.t1 MTR_1g050545 28.637 433 253 15 38 453 90 483 2.18e-33 132
MS.gene91275.t1 MTR_2g095730 28.333 420 244 16 44 444 107 488 4.89e-33 131
MS.gene91275.t1 MTR_1g094155 25.901 444 273 13 29 452 86 493 6.64e-33 130
MS.gene91275.t1 MTR_2g095750 27.206 408 261 9 44 444 113 491 2.76e-31 126
MS.gene91275.t1 MTR_4g057585 25.858 437 279 13 21 445 84 487 1.23e-30 124
MS.gene91275.t1 MTR_4g057595 26.726 449 279 14 11 445 76 488 1.44e-30 124
MS.gene91275.t1 MTR_4g057570 26.047 430 281 14 27 446 83 485 2.55e-30 123
MS.gene91275.t1 MTR_5g097180 26.573 429 251 14 36 444 44 428 1.48e-29 120
MS.gene91275.t1 MTR_4g084710 24.703 421 269 11 36 444 46 430 5.40e-28 115
MS.gene91275.t1 MTR_4g075150 24.942 433 271 13 36 444 51 453 6.18e-25 107
MS.gene91275.t1 MTR_1g020090 25.727 447 274 16 17 446 84 489 2.58e-24 105
MS.gene91275.t1 MTR_7g013790 25.858 437 260 16 36 443 52 453 4.54e-24 104
MS.gene91275.t1 MTR_2g012850 25.231 432 266 14 36 441 52 452 9.18e-24 103
MS.gene91275.t1 MTR_3g079590 24.594 431 262 16 36 446 95 482 1.33e-23 103
MS.gene91275.t1 MTR_3g079560 24.883 426 267 13 36 446 95 482 2.51e-23 102
MS.gene91275.t1 MTR_4g075150 24.942 433 269 14 36 444 51 451 2.61e-23 102
MS.gene91275.t1 MTR_2g012860 25.508 443 253 14 36 441 58 460 2.62e-23 102
MS.gene91275.t1 MTR_1g021020 24.651 430 260 15 36 446 95 479 4.83e-23 102
MS.gene91275.t1 MTR_8g099930 25.592 422 268 15 36 437 50 445 5.47e-23 101
MS.gene91275.t1 MTR_4g089155 25.342 438 260 14 36 441 70 472 1.32e-22 100
MS.gene91275.t1 MTR_4g122950 25.571 438 275 18 36 446 56 469 2.75e-22 99.8
MS.gene91275.t1 MTR_1g021010 24.299 428 265 13 36 446 93 478 3.33e-22 99.4
MS.gene91275.t1 MTR_1g040370 25.060 419 248 11 36 446 47 407 8.74e-22 97.4
MS.gene91275.t1 MTR_3g498755 26.526 426 260 17 36 437 32 428 1.09e-21 97.4
MS.gene91275.t1 MTR_3g079570 24.648 426 267 13 36 446 96 482 2.72e-21 96.7
MS.gene91275.t1 MTR_2g095710 25.000 412 251 12 49 444 105 474 2.83e-21 96.7
MS.gene91275.t1 MTR_3g079600 24.171 422 278 11 36 446 93 483 5.08e-21 95.9
MS.gene91275.t1 MTR_3g034290 25.060 419 275 12 36 444 91 480 5.88e-21 95.5
MS.gene91275.t1 MTR_3g434850 26.144 459 294 19 6 446 15 446 8.82e-21 94.7
MS.gene91275.t1 MTR_0003s0560 25.369 406 232 15 65 444 117 477 1.18e-20 94.7
MS.gene91275.t1 MTR_2g449850 26.185 401 249 16 57 437 72 445 1.26e-20 94.4
MS.gene91275.t1 MTR_4g122960 24.434 442 273 18 36 446 56 467 1.98e-20 94.0
MS.gene91275.t1 MTR_3g079620 32.948 173 103 5 36 199 95 263 2.00e-20 94.0
MS.gene91275.t1 MTR_7g021130 26.603 421 263 17 36 437 47 440 5.26e-20 92.4
MS.gene91275.t1 MTR_0003s0560 27.155 232 139 8 36 244 90 314 3.30e-19 89.0
MS.gene91275.t1 MTR_2g062980 32.934 167 97 6 36 194 57 216 1.40e-18 88.2
MS.gene91275.t1 MTR_1g095540 24.009 429 271 19 31 437 44 439 1.83e-18 87.8
MS.gene91275.t1 MTR_1g095560 22.402 433 273 16 31 437 44 439 3.29e-18 87.0
MS.gene91275.t1 MTR_2g062990 34.437 151 88 5 36 178 57 204 4.69e-18 86.7
MS.gene91275.t1 MTR_7g080180 22.266 512 303 21 1 442 1 487 7.32e-18 86.3
MS.gene91275.t1 MTR_2g081620 24.057 424 277 17 36 443 58 452 7.47e-18 86.3
MS.gene91275.t1 MTR_3g079630 31.792 173 105 5 36 199 95 263 1.15e-17 85.5
MS.gene91275.t1 MTR_2g063000 32.680 153 90 5 36 178 56 205 2.24e-17 84.7
MS.gene91275.t1 MTR_8g011350 22.811 434 277 15 55 442 63 484 2.36e-17 84.7
MS.gene91275.t1 MTR_3g090130 23.645 406 263 13 65 449 72 451 1.85e-16 81.6
MS.gene91275.t1 MTR_1g095560 31.579 152 93 5 31 173 44 193 2.14e-16 81.6
MS.gene91275.t1 MTR_3g090150 23.502 434 281 16 38 449 54 458 2.19e-16 81.6
MS.gene91275.t1 MTR_3g034290 29.310 174 114 4 36 202 91 262 2.66e-16 80.9
MS.gene91275.t1 MTR_5g072570 31.176 170 103 5 36 196 46 210 4.13e-16 80.9
MS.gene91275.t1 MTR_7g080180 27.126 247 147 11 1 220 1 241 1.68e-15 79.0
MS.gene91275.t1 MTR_8g011350 28.877 187 117 5 55 227 63 247 1.86e-15 79.0
MS.gene91275.t1 MTR_7g051430 32.667 150 86 5 59 196 69 215 3.18e-14 74.7
MS.gene91275.t1 MTR_7g051430 32.667 150 86 5 59 196 69 215 3.70e-14 74.7
MS.gene91275.t1 MTR_2g018600 23.266 447 270 18 34 443 49 459 2.59e-13 72.0
MS.gene91275.t1 MTR_3g114620 39.823 113 31 2 115 227 12 87 3.43e-13 65.5
MS.gene91275.t1 MTR_2g018590 23.251 443 276 18 34 443 48 459 8.86e-13 70.5
MS.gene91275.t1 MTR_3g100420 22.465 503 286 22 3 441 24 486 1.58e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91275.t1 AT2G27920 62.037 432 155 4 28 451 29 459 0.0 543
MS.gene91275.t1 AT2G27920 59.221 385 148 4 75 451 4 387 1.95e-157 451
MS.gene91275.t1 AT2G27920 57.514 346 138 4 114 451 48 392 2.76e-133 390
MS.gene91275.t1 AT3G45010 26.328 433 281 10 21 444 89 492 6.21e-38 145
MS.gene91275.t1 AT3G10410 27.483 433 268 14 24 444 90 488 2.87e-33 132
MS.gene91275.t1 AT5G22980 25.121 414 260 11 44 444 111 487 1.76e-32 129
MS.gene91275.t1 AT1G15000 26.353 425 252 14 36 444 38 417 6.24e-32 127
MS.gene91275.t1 AT1G11080 26.682 446 261 17 36 446 67 481 2.18e-24 105
MS.gene91275.t1 AT1G11080 26.682 446 261 17 36 446 67 481 2.63e-24 105
MS.gene91275.t1 AT4G15100 26.126 444 270 14 36 449 61 476 1.84e-23 103
MS.gene91275.t1 AT1G61130 26.682 446 251 17 36 446 48 452 3.11e-22 99.4
MS.gene91275.t1 AT5G23210 25.522 431 286 12 36 444 68 485 4.48e-22 99.0
MS.gene91275.t1 AT3G52010 26.682 431 254 17 36 443 82 473 5.50e-22 98.6
MS.gene91275.t1 AT2G35770 25.178 421 270 15 36 441 55 445 1.28e-21 97.4
MS.gene91275.t1 AT2G24000 25.342 438 259 19 36 441 47 448 2.58e-20 93.6
MS.gene91275.t1 AT2G35780 24.762 420 266 15 36 437 47 434 2.87e-20 93.2
MS.gene91275.t1 AT4G30610 25.346 434 263 18 36 441 49 449 3.20e-20 93.2
MS.gene91275.t1 AT3G52000 25.412 425 263 14 36 443 81 468 3.52e-20 93.2
MS.gene91275.t1 AT2G05850 25.822 426 265 18 36 443 81 473 7.99e-20 92.4
MS.gene91275.t1 AT4G30810 24.703 421 275 16 46 451 67 460 1.66e-19 91.3
MS.gene91275.t1 AT2G33530 26.185 443 268 19 31 446 44 454 1.97e-19 90.9
MS.gene91275.t1 AT1G43780 31.016 187 111 5 36 208 54 236 2.44e-19 90.9
MS.gene91275.t1 AT2G24010 37.415 147 78 5 36 173 47 188 5.73e-19 89.4
MS.gene91275.t1 AT3G63470 23.821 424 272 16 36 443 98 486 1.02e-18 89.0
MS.gene91275.t1 AT5G23210 32.961 179 103 7 36 202 68 241 1.17e-18 88.6
MS.gene91275.t1 AT5G08260 24.609 447 275 18 36 450 56 472 1.44e-18 88.6
MS.gene91275.t1 AT1G28110 25.635 433 263 16 31 437 42 441 1.52e-18 88.2
MS.gene91275.t1 AT1G28110 25.635 433 263 16 31 437 42 441 1.52e-18 88.2
MS.gene91275.t1 AT5G42230 33.548 155 92 3 65 208 72 226 1.96e-18 87.8
MS.gene91275.t1 AT5G42230 33.548 155 92 3 65 208 72 226 1.96e-18 87.8
MS.gene91275.t1 AT4G12910 25.272 459 267 19 36 442 52 486 3.01e-18 87.4
MS.gene91275.t1 AT3G07990 36.301 146 81 5 36 172 51 193 3.12e-18 87.4
MS.gene91275.t1 AT5G42240 32.258 186 109 6 36 208 49 230 4.25e-18 87.0
MS.gene91275.t1 AT3G17180 33.562 146 86 5 36 173 56 198 1.14e-17 85.5
MS.gene91275.t1 AT3G17180 33.562 146 86 5 36 173 56 198 2.27e-17 84.7
MS.gene91275.t1 AT4G12910 27.344 256 161 9 36 279 52 294 6.19e-17 83.2
MS.gene91275.t1 AT2G12480 33.333 138 86 2 65 196 75 212 2.38e-16 81.3
MS.gene91275.t1 AT2G12480 33.333 138 86 2 65 196 75 212 2.59e-16 81.3
MS.gene91275.t1 AT2G12480 33.333 138 86 2 65 196 75 212 2.63e-16 81.3
MS.gene91275.t1 AT2G12480 33.333 138 86 2 65 196 75 212 2.81e-16 81.3
MS.gene91275.t1 AT3G25420 26.236 263 157 10 36 279 47 291 3.60e-16 81.3
MS.gene91275.t1 AT3G52020 25.747 435 253 20 36 443 96 487 7.26e-16 80.1
MS.gene91275.t1 AT3G02110 31.655 139 89 2 65 197 81 219 2.09e-15 78.6
MS.gene91275.t1 AT2G24010 33.333 162 79 6 36 173 18 174 4.63e-15 76.6
MS.gene91275.t1 AT2G24010 33.333 162 79 6 36 173 47 203 9.12e-15 76.6
MS.gene91275.t1 AT2G24010 33.333 162 79 6 36 173 18 174 1.04e-14 76.6
MS.gene91275.t1 AT5G36180 22.967 418 255 16 34 430 48 419 6.46e-14 73.9
MS.gene91275.t1 AT5G22960 30.769 143 77 5 33 173 34 156 1.08e-13 70.1
MS.gene91275.t1 AT1G73290 26.609 233 135 10 34 248 47 261 3.31e-13 70.5
MS.gene91275.t1 AT3G56540 30.935 139 87 4 36 168 96 231 3.33e-13 70.1
MS.gene91275.t1 AT1G73290 26.609 233 135 10 34 248 47 261 7.87e-13 70.5
MS.gene91275.t1 AT1G73290 26.609 233 135 10 34 248 47 261 8.63e-13 70.5
MS.gene91275.t1 AT1G73280 26.860 242 137 10 6 220 14 242 8.63e-13 70.1
MS.gene91275.t1 AT1G73300 22.459 423 255 18 34 432 48 421 1.12e-12 70.1
MS.gene91275.t1 AT1G73300 22.459 423 255 18 34 432 48 421 1.12e-12 70.1
MS.gene91275.t1 AT1G73280 26.860 242 137 10 6 220 14 242 1.98e-12 69.3
MS.gene91275.t1 AT2G22970 27.434 226 130 8 34 242 40 248 3.71e-12 67.8
MS.gene91275.t1 AT2G22980 23.002 413 257 17 34 430 41 408 4.50e-12 68.2
MS.gene91275.t1 AT2G22970 27.434 226 130 8 34 242 40 248 4.81e-12 68.2
MS.gene91275.t1 AT2G22970 27.434 226 130 8 34 242 40 248 5.18e-12 67.8
MS.gene91275.t1 AT2G22970 27.434 226 130 8 34 242 40 248 7.48e-12 67.4
MS.gene91275.t1 AT1G73310 26.724 232 130 10 34 245 48 259 1.11e-11 67.0
MS.gene91275.t1 AT1G73310 26.724 232 130 10 34 245 48 259 1.52e-11 66.6
MS.gene91275.t1 AT2G22980 23.450 371 229 14 34 388 41 372 2.40e-11 65.9
MS.gene91275.t1 AT2G22980 22.973 370 232 14 34 388 41 372 2.72e-11 65.9
MS.gene91275.t1 AT3G12220 31.293 147 84 4 34 168 42 183 3.59e-11 65.1
MS.gene91275.t1 AT3G12220 31.081 148 85 4 34 169 42 184 3.80e-11 65.1
MS.gene91275.t1 AT1G73270 28.333 180 103 7 34 196 48 218 8.37e-11 64.3
MS.gene91275.t1 AT3G10450 26.471 204 124 7 34 220 44 238 8.97e-11 63.9
MS.gene91275.t1 AT1G73270 28.333 180 103 7 34 196 48 218 8.98e-11 64.3
MS.gene91275.t1 AT3G12220 31.111 135 78 3 45 169 25 154 9.21e-11 63.9

Find 86 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCTTACCACATAGTCTTC+TGG 0.181107 2.3:+13487551 None:intergenic
CTTTGTGACACCATTTAATA+AGG 0.235411 2.3:+13486958 None:intergenic
ACAAACTTACGTAATATTCT+TGG 0.277759 2.3:+13486916 None:intergenic
TTTCTCACCTCAGCAATTCT+TGG 0.278398 2.3:+13486754 None:intergenic
GATCTAGACACCTTATTAAA+TGG 0.279796 2.3:-13486968 MS.gene91275:CDS
GAAATTCCTTGGCTCCAAAT+TGG 0.297340 2.3:+13488638 None:intergenic
TGAATTTAACAGGGTGGTTC+AGG 0.297436 2.3:-13488702 MS.gene91275:intron
CAAGTATCCAATAGAAGTTT+AGG 0.309556 2.3:+13480347 None:intergenic
ATGAAAACCTAAACTTCTAT+TGG 0.312505 2.3:-13480354 MS.gene91275:CDS
TGGTCCTCTTGATGCCAATT+TGG 0.315573 2.3:-13488652 MS.gene91275:CDS
TTCTTACCACATAGTCTTCT+GGG 0.318865 2.3:+13487552 None:intergenic
GCCAATCATTCTCTGGTTGC+AGG 0.324301 2.3:-13488823 MS.gene91275:CDS
GGTGGTTCAGGAGTTGGATT+TGG 0.332535 2.3:-13488690 MS.gene91275:CDS
TTTGTCACTCTTGTATTCCT+TGG 0.347875 2.3:-13489289 MS.gene91275:CDS
GGAAAATTTGCTGTTACTCT+TGG 0.356885 2.3:-13488150 MS.gene91275:CDS
CTCAACCAAGTGAAATTCCT+TGG 0.361943 2.3:+13488627 None:intergenic
TGAAGATGGATTAGAAGAAT+GGG 0.371841 2.3:-13489227 MS.gene91275:CDS
GTGAAGATGGATTAGAAGAA+TGG 0.379824 2.3:-13489228 MS.gene91275:CDS
AAAAGCAGATTTGCTATTTG+TGG 0.380443 2.3:-13488604 MS.gene91275:intron
TCACAGAAGCACACATGTTC+TGG 0.387689 2.3:-13488893 MS.gene91275:intron
GTTGATGAGTTGCTAGCTCT+TGG 0.389681 2.3:-13480747 MS.gene91275:CDS
CTTGACATGTCTTTCAAAAG+AGG 0.392714 2.3:+13487439 None:intergenic
CAAACTTACGTAATATTCTT+GGG 0.412359 2.3:+13486917 None:intergenic
CCCTGCAACCAGAGAATGAT+TGG 0.421423 2.3:+13488822 None:intergenic
CTTTCACTTCCGCAATATAG+AGG 0.424690 2.3:+13480403 None:intergenic
GAGCCAAGATTCAGTTCCCT+TGG 0.431242 2.3:+13480582 None:intergenic
ATATGACTTAAAGAAGCCTT+TGG 0.433079 2.3:+13480375 None:intergenic
TAGCAATAGCAGCAACTTTG+TGG 0.433976 2.3:-13487222 MS.gene91275:intron
AAACTGAACCCTGTACCAAC+TGG 0.435888 2.3:+13488309 None:intergenic
GCTATGCATGGCTGATCAAT+AGG 0.438784 2.3:+13480157 None:intergenic
CAACCAAGGGAACTGAATCT+TGG 0.446046 2.3:-13480585 MS.gene91275:CDS
TTGAGAACAGTTTGGCAGAA+AGG 0.457698 2.3:-13487316 MS.gene91275:intron
ATTTGACATTGCAGTTCTCA+TGG 0.458928 2.3:-13487465 MS.gene91275:intron
TAGGACAATCCAGTTGGTAC+AGG 0.460572 2.3:-13488318 MS.gene91275:CDS
TAACAGGGTGGTTCAGGAGT+TGG 0.461150 2.3:-13488696 MS.gene91275:intron
TTATCAATGCAACTTCTACA+TGG 0.477050 2.3:-13487265 MS.gene91275:CDS
AGCCATGGCCAATCATTCTC+TGG 0.493120 2.3:-13488830 MS.gene91275:CDS
GAGAATGATTGGCCATGGCT+TGG 0.495127 2.3:+13488833 None:intergenic
TGTTACTTGTGTAGATGGCC+AGG 0.495826 2.3:-13480457 MS.gene91275:intron
GGAGGGATTCTCCACTCTGA+AGG 0.508853 2.3:+13488854 None:intergenic
GTGTGGTATTAGCAAACAGC+TGG 0.517088 2.3:-13487580 MS.gene91275:CDS
ATATACTATCTTCAAGCCGC+TGG 0.518830 2.3:+13480103 None:intergenic
GGTGCTTTGAAGAGTGAAGA+TGG 0.519458 2.3:-13489241 MS.gene91275:CDS
ATGATTGGCCATGGCTTGGA+GGG 0.520573 2.3:+13488837 None:intergenic
ATTAGATGAAGTAAGATACT+TGG 0.520640 2.3:+13487003 None:intergenic
TTCTATTGGATACTTGATGC+TGG 0.524231 2.3:-13480340 MS.gene91275:CDS
TCTCTTCTCAATTGTTGATG+AGG 0.525067 2.3:+13487057 None:intergenic
AATGATTGGCCATGGCTTGG+AGG 0.533677 2.3:+13488836 None:intergenic
TTGATGCCAATTTGGAGCCA+AGG 0.533958 2.3:-13488644 MS.gene91275:CDS
ATCAAGCAACAACTTGAAGC+TGG 0.544410 2.3:-13487293 MS.gene91275:CDS
TTTGACATTGCAGTTCTCAT+GGG 0.549489 2.3:-13487464 MS.gene91275:intron
TGATCTCATTTGTGCAACCA+AGG 0.557323 2.3:-13480599 MS.gene91275:CDS
GGAAGACTGAAGACTACACT+TGG 0.560174 2.3:-13488099 MS.gene91275:CDS
AATATATAGGACAATCCAGT+TGG 0.566074 2.3:-13488324 MS.gene91275:intron
CCAATCATTCTCTGGTTGCA+GGG 0.566202 2.3:-13488822 MS.gene91275:CDS
TGGAGCCAAGGAATTTCACT+TGG 0.566368 2.3:-13488632 MS.gene91275:CDS
GAGGGATTCTCCACTCTGAA+GGG 0.578265 2.3:+13488855 None:intergenic
AACCAGAGAATGATTGGCCA+TGG 0.587974 2.3:+13488828 None:intergenic
GATCTCATTTGTGCAACCAA+GGG 0.589058 2.3:-13480598 MS.gene91275:CDS
GGCTCCAAATTGGCATCAAG+AGG 0.589597 2.3:+13488648 None:intergenic
GAAGATGGATTAGAAGAATG+GGG 0.592964 2.3:-13489226 MS.gene91275:CDS
TGCATAGCACTAAACATGGT+GGG 0.593720 2.3:-13480142 MS.gene91275:CDS
GACAGAACTCCTCTATATTG+CGG 0.597836 2.3:-13480412 MS.gene91275:CDS
TGGAGAATCCCTCCAAGCCA+TGG 0.599073 2.3:-13488845 MS.gene91275:CDS
TTGACATTGCAGTTCTCATG+GGG 0.607924 2.3:-13487463 MS.gene91275:intron
TATGAAACCAAGAATTGCTG+AGG 0.611925 2.3:-13486761 MS.gene91275:intron
ACTTGTCAAAACTGATGAGG+AGG 0.613052 2.3:-13488268 MS.gene91275:CDS
TGCAATTACACAGTCACCAG+CGG 0.617459 2.3:-13480119 MS.gene91275:CDS
ATTACTTGTCAAAACTGATG+AGG 0.618007 2.3:-13488271 MS.gene91275:CDS
CCTCGTAAAATAAGAAACCA+AGG 0.630013 2.3:+13489272 None:intergenic
CAGAAGCACACATGTTCTGG+TGG 0.633017 2.3:-13488890 MS.gene91275:CDS
AGACTGAAGACTACACTTGG+AGG 0.634439 2.3:-13488096 MS.gene91275:intron
AGGACAATCCAGTTGGTACA+GGG 0.637361 2.3:-13488317 MS.gene91275:CDS
TAATAATGTAGTCAAATCAG+TGG 0.640150 2.3:+13488242 None:intergenic
GATCTCCCCAGAAGACTATG+TGG 0.641298 2.3:-13487558 MS.gene91275:intron
TCTTACCACATAGTCTTCTG+GGG 0.642606 2.3:+13487553 None:intergenic
GCCATGCATAGCACTAAACA+TGG 0.646630 2.3:-13480146 MS.gene91275:CDS
GTCAATGTAACTGTGTACAA+TGG 0.655505 2.3:-13480723 MS.gene91275:CDS
ATGTCAAGAATTGATGACAA+TGG 0.657978 2.3:-13487424 MS.gene91275:CDS
ATGCATAGCACTAAACATGG+TGG 0.666932 2.3:-13480143 MS.gene91275:CDS
TTACAAAAGTCCCTTCAGAG+TGG 0.669530 2.3:-13488865 MS.gene91275:CDS
ACCATGTTTAGTGCTATGCA+TGG 0.680684 2.3:+13480145 None:intergenic
ATCATTCTCTGGTTGCAGGG+AGG 0.688272 2.3:-13488819 MS.gene91275:CDS
GGAAGTGAAAGAAAGACCAA+AGG 0.702647 2.3:-13480391 MS.gene91275:CDS
TATTCAAAGAAATATCAATG+AGG 0.703117 2.3:-13487033 MS.gene91275:CDS
AATTGCTGACAGATGGTATG+CGG 0.759275 2.3:-13486821 MS.gene91275:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr2.3 gene 13480114 13489332 13480114 ID=MS.gene91275
chr2.3 mRNA 13480114 13489332 13480114 ID=MS.gene91275.t1;Parent=MS.gene91275
chr2.3 exon 13489206 13489332 13489206 ID=MS.gene91275.t1.exon1;Parent=MS.gene91275.t1
chr2.3 CDS 13489206 13489332 13489206 ID=cds.MS.gene91275.t1;Parent=MS.gene91275.t1
chr2.3 exon 13488815 13488909 13488815 ID=MS.gene91275.t1.exon2;Parent=MS.gene91275.t1
chr2.3 CDS 13488815 13488909 13488815 ID=cds.MS.gene91275.t1;Parent=MS.gene91275.t1
chr2.3 exon 13488605 13488712 13488605 ID=MS.gene91275.t1.exon3;Parent=MS.gene91275.t1
chr2.3 CDS 13488605 13488712 13488605 ID=cds.MS.gene91275.t1;Parent=MS.gene91275.t1
chr2.3 exon 13488097 13488337 13488097 ID=MS.gene91275.t1.exon4;Parent=MS.gene91275.t1
chr2.3 CDS 13488097 13488337 13488097 ID=cds.MS.gene91275.t1;Parent=MS.gene91275.t1
chr2.3 exon 13487559 13487602 13487559 ID=MS.gene91275.t1.exon5;Parent=MS.gene91275.t1
chr2.3 CDS 13487559 13487602 13487559 ID=cds.MS.gene91275.t1;Parent=MS.gene91275.t1
chr2.3 exon 13487406 13487473 13487406 ID=MS.gene91275.t1.exon6;Parent=MS.gene91275.t1
chr2.3 CDS 13487406 13487473 13487406 ID=cds.MS.gene91275.t1;Parent=MS.gene91275.t1
chr2.3 exon 13487223 13487328 13487223 ID=MS.gene91275.t1.exon7;Parent=MS.gene91275.t1
chr2.3 CDS 13487223 13487328 13487223 ID=cds.MS.gene91275.t1;Parent=MS.gene91275.t1
chr2.3 exon 13486926 13487122 13486926 ID=MS.gene91275.t1.exon8;Parent=MS.gene91275.t1
chr2.3 CDS 13486926 13487122 13486926 ID=cds.MS.gene91275.t1;Parent=MS.gene91275.t1
chr2.3 exon 13486762 13486831 13486762 ID=MS.gene91275.t1.exon9;Parent=MS.gene91275.t1
chr2.3 CDS 13486762 13486831 13486762 ID=cds.MS.gene91275.t1;Parent=MS.gene91275.t1
chr2.3 exon 13480719 13480769 13480719 ID=MS.gene91275.t1.exon10;Parent=MS.gene91275.t1
chr2.3 CDS 13480719 13480769 13480719 ID=cds.MS.gene91275.t1;Parent=MS.gene91275.t1
chr2.3 exon 13480571 13480623 13480571 ID=MS.gene91275.t1.exon11;Parent=MS.gene91275.t1
chr2.3 CDS 13480571 13480623 13480571 ID=cds.MS.gene91275.t1;Parent=MS.gene91275.t1
chr2.3 exon 13480333 13480465 13480333 ID=MS.gene91275.t1.exon12;Parent=MS.gene91275.t1
chr2.3 CDS 13480333 13480465 13480333 ID=cds.MS.gene91275.t1;Parent=MS.gene91275.t1
chr2.3 exon 13480114 13480182 13480114 ID=MS.gene91275.t1.exon13;Parent=MS.gene91275.t1
chr2.3 CDS 13480114 13480182 13480114 ID=cds.MS.gene91275.t1;Parent=MS.gene91275.t1
Gene Sequence

>MS.gene91275

ATGGAGAAGCTTTATGTGTTTTTTGTCACTCTTGTATTCCTTGGTTTCTTATTTTACGAGGGAAAAGTTGGTGCTTTGAAGAGTGAAGATGGATTAGAAGAATGGGGATATGTGCAAGTTAGACCTAGTAAGCTAAATATAGTACTTGAATTGTGTAATTTCATGTTATTGTGTTTTCCAAACTTTTAAATTGATCGTGTCATGATATTGTAAACCCTAGTTTGAATTCTTTGTATTTCACTCATAAGTATAATACTACAATATTATTATTTCTATAAAAAAAAAAAAAAATAGTTCGAATTAAAGTGTGCTTTAGGTCTCAATATGTGTTATCATTAAGGTGTTACCGATTTTTAAAATTATGGCGTAATTAACTTAAACAATAATTGACATTACCATTTATTTTGAATTGTGTTATCACAGAAGCACACATGTTCTGGTGGCTTTACAAAAGTCCCTTCAGAGTGGAGAATCCCTCCAAGCCATGGCCAATCATTCTCTGGTTGCAGGGAGGACCTGTAAGTATTATTTGAATTAGGGCATGATTTTAATTTTGAACAAGAACAATCCATGTTTTTATGTGTTTGTGAAATGAAGTTTCAAATTATTGAATTTAACAGGGTGGTTCAGGAGTTGGATTTGGAAATTTTGTAGAGTTTGGTCCTCTTGATGCCAATTTGGAGCCAAGGAATTTCACTTGGTTGAGAAAAGCAGATTTGCTATTTGTGGTAACTCAATTTTTTTTCCTGATTTGTGTAACTCAATTTTGCCCATGTTTAGAAAAACGGTGAATTTTATAAAATTACAGTGATACCGTAATTACGGTTACTCACCAGAAATTTTCCTAAATTCACCGTTAATTCAAACATGCATCAGCTAAATCATTTCACTCTTTTTTTGTTGTTGCATACTTTGGTTCTTTTCTTTGAGGGTGAGGTTCTCAATTTCTAATCACTCATATTAAATGCATTTTTTGTTGATATTATAATATATAGGACAATCCAGTTGGTACAGGGTTCAGTTTTGTTGAGGATTCAAAATTACTTGTCAAAACTGATGAGGAGGCAGCCACTGATTTGACTACATTATTAATCAAGATATTTAATAATGATCCAAGTCTACAAAAATGTAATTTGTTCATTTTTGGGGAATCTTATGGTGGAAAATTTGCTGTTACTCTTGGATTATCAGCCCTCAAAGCAATTAAAAAAGGAAGACTGAAGACTACACTTGGAGGTATTATAATTTCCTTGAAATTTTTCATTTTTCATCTTTAAATGTGGTTAGTTTCTTCTGTTGATAGATTATGTATTATTTGAACATAGATTTAAACATATATTTATCTAGTTGGAGTCTGTCCAAACATATCGGTCCACGCCCCCCAAGCACAAGTTCTGTTAAAAGGCGAAATGGTTTGAAATACATATAGCGGTCCACAGCCCTCCAAGCACGAGTAATAGGCAAGGGCGAGTGGTTTGAAATGCATATTGGTGGTCCAATATATATATATAACACGATTAAAATCTTTTTTATAAGGAATAAGAAAACAACTACTAAAATGAAGAAATATAAAAGACTATATAGAAATCATTTCAAAGCAAAAATGAAAAGAAAAAACTAAACTGAAAATTGGATACATCACAAATAAAAATCATATTAACGTCATAAATGTGTTAAGAATAGTACTATATGGTATTTCTCGACTTTATGCTATTTTTATCCAAATTTAGGTGTGGTATTAGCAAACAGCTGGATCTCCCCAGAAGACTATGTGGTAAGAACAAAAATAATTCTACCCCAAGATGTTCTCAGCATTAATTTGAGCTTTCACTTTTTTAGTATTTAATTTGACATTGCAGTTCTCATGGGGTCCTCTTTTGAAAGACATGTCAAGAATTGATGACAATGGACTGCAAAAATCAAACATGTATGTAACATATGTTTTCATTCCCATCTTCTAGTATTAATCATTGTATTGTAGGATTAACATGATTTTGAGAACAGTTTGGCAGAAAGGATCAAGCAACAACTTGAAGCTGGTGAATTTATCAATGCAACTTCTACATGGATTCAACTTGAATATGTAATTAGCAATAGCAGCAACTTTGTGGTACTAACTTACATTTTTATTCATAATATATTTAAATTAATAATATAGATAAACTACTAATGAATAATTAATTTATTTATCTCATGTTTGTGTGTTTAAGGATTTCTATAATTTTATGGAGGACAATGGAAGTTATTCAGCAACCTCATCAACAATTGAGAAGAGATTATTCAAAGAAATATCAATGAGGCGTTACTCCAAGTATCTTACTTCATCTAATGTTGTTAATCGTGATCTAGACACCTTATTAAATGGTGTCACAAAGAAAAAATTGAAGATCATTCCCAAGAATATTACGTAAGTTTGTATAAACTATGCAAAATAAAAATAAATGTACTTAGAATTCCAATGATTAAAACCCTAATCTCATGTTTCTTGCAATTGCTGACAGATGGTATGCGGAGTCAGTTTATGTGATTGAAATTTTTTTAGGTGAATTTATGAAACCAAGAATTGCTGAGGTGAGAAAATATTTAACTAATTAGAACAAGTTTGGAAAATATTCATCACGGTTTCTTGTAAAAATTATGCTTTGATTTTCTAAACTTAGGTGATTTCTATTTGATGTTTGTTGTTTTTGGATTTCCAAACTGTTAAATTTGAATTTCCAAATTTATCATCTACCGAAGTTGTTACTAGGTTGAGTCACGACCAGGTCGCTCTCTTTAAGACGTTTCGTGGCACTACCCAAAGTTGTGCAAGGTAGACTATCAACCACGCCGCCTCCAGGATAAAACAAGCCCAGCTACAACTGTTCGATTAACTACTGCACTGTAGAAAAGTCGTTCGAGAATTACACCCTCAAAATATGGCTCAATCGTTTGATCGAAGCCACTCGATACGGTACGTAACCGCTCTATTCGAAACCGTTCAAATTAATATGGTATTATTACCATTCTATTATGGTGCTGAGACCACTCAAATATGGTGTTACCACCATTCTAACTTCTCCAAAACATGAATATGGCACTACGACCACTCAAATATGGTGATAACACCATTTCTCCTTAAAATTATTAAAATAATATATATACTGTTAAGATCATTCTTTAATATGATCTTAATAGTACTCTATATTCCGAAGAATCATATATTATCGAAGGGAATATGAACTTAAGACCAAGGGACTATGGTCTTAAGAACACTCTTAATACCGAAGGGACAGAAAGGAGTAGAAGCAGAAGAAACTTGTTAAAAACAAGTAGGAGGGAGAAGAGAGGAAAAAACACAGGAAGCATCGACTGTGAATTTTCGGTGCAAAGAATCAAATGGGGCGAGCTCTCCTTTTATAGGGAGAGTTTGTAACAAAAAACGAGTGACTTGGGGATTAAGTTTGCTTAATCCTTAAGCAAACGCGTTTTGTTTCTTAATTGGATATATCCGGAAGTTTCTGGATATGCTTTTGGATCGGGTCGGATCGTAACAAATTTATTTGTTACGCGTAGCGCTTACGGATAATGATTAAATTAATTAATTAATTAATTTAACATTTTCAAGTGACAAAAAAATATATATCAAATTTTTTTTTTTTTAAGCGTTCACCCGTTCATAAAATTGGGTACCCCAAGGGCACACCCTTGGAGGTCACTTTTCCCATATATAAACACTTACTAGTTGGGGTGACCCTTCAATGTGGGACATTTTTAAGTCACACCCACACACTAGTTTTTTCATAGTGTTTTTCTTTCCAATTTTCTTCACTAGAATTAACTAGTGTTCCAACAATCCCCCACTTGACTTCAAAATGGTTTCGAGAAATAACGTAAAACGTTTCCATAAGATTTGCTAATATACAAAGGTGTCGCCAACAACTTGAACCTTAGCATAGTGGAAGGTATTCTGATTTAACAAGAGTTGCTTACAGCATTGAACTCTATCTCAGACATAGAATCCACACACAAACCTTTTCATAGGTGTATTCTAAAAGCCCGTGCGTTTTAAGGCCCTGCACGTGTATCCCGGTTTTAACGAATGCTCTAGGAATTCTGCCTCGAAATTCCATAGGACTGGCCTAAGTTCCACATTCGTATAGGTGAGTCTATCAAGGGTACTCCTGTAGCTGTGTACCCCACTCAACATAGAGTATAGATCTCATTAAGAGTTACTATTACCTCATCCTTCTTTCGCTGCAGGATCATGCTTTCTATATTCTTTCTCTCATAGCATGTTCTACCACTTCATGACTTGTTTTTACCCATTGAACCTATTTCTTGGGATCTCCAGTCATGTAGGTCGGGTTACCATCACTTGTGGGCTATAGGCATTAGTCCCATCCTACTGGATGTTTCTTGGACTTTCTCTCTATTAAGTCCTTTCGTCAAAGGATCAGCTAAGTTTTCATTCGTACGTACAAAATCAACTCTAACCGCTCCATTTAGAGATACACTCTCTAATCGTGCTATGTTTTCGCCTTATCTGTCGTCTCTTACCATTGTAATAACGATTCTTAATCTTTGCAATAGCCGCGGTACTATCGCAATGAATTAACACAGCCGGTAACGGTTTCTCCCATGATGGGATTTCAGCTAGCAAGAATCTTAGCCAACTTGCTTCTTCACTAGTTTTCTCTAGTGTTCTCATCTCAGATTCATTCCATAGTGGACTGAGTCAATATCATTTGTTTTAACAAACAACTCCTCTAGTGATGCTCAATGTGCAAACACTAGTCGCTAAATATTCATCTGAAAGACGTTCTATTTTTATATCTTGTACCATTTAGGTTCAATATGTTACTCCTAGTGAAGTAATCTTAGAGTCATAGTATCCTCATGACTCTTTCTATAGCATGGCAATGCTTTCCATCCGTCTACTAGTAAACTTGCACAAGAGTTTCACGACATCGACAATGTCGGATCTAATACATTCAGTGGCATACCTAAGTGCTGCCAATGATGCTCGTATATTCTGTTTTTCTAAATCCATCTCAAGTGTTCTTACACTTGGATCATAATATATGATTGCAAGTTTACGGTGAAATAATTACATTTCTTTAAGATCTTCTCAACTTTGTGAGATTTATCAAAAAAGTTATCTTTTCTGATCTAGTAATCTTGAAACCAAGAATTACTTCAATTTTTATTTAGGTCTTTCTTATCAATGTTGTTGATAAACAATGATTTCACATAATTCATAACATGAATCTTTAAATCAAATATGAGCAAGTCGTCTTCATAAAGACATATGATCGTGCAAATATTATTTGTCACTTTCATTCACTTTATACTCATTCGACAACATTAGAATGTCAAATTTTTCATGTCATTCCTCAGGAGTTTATTTTAGACCATTCAAATAATTATCTAACTTACAGACCTTGTTTTCTTGTCCATGAATTGCAAAAATTTTCAGGTTGTTTCATATAGACTTGTTCTTCTAGTTCACCATAAAAAGACAACTTTCACATCCATTTGGAGTACTATCGAGTTATAAATGGCGGCTAAAGGGACTAGTACTCTTATGGATATGATTTTCGTGACTGGTGAATGAATGTCGAAGAAGTCTATATTTTTCTCTTTGTTTAAAACCTTTGACTACAAGGAAAGCCTTGTATTCATCGTACCATCAGGTTTTAGTTCCCTTTTTTTTTCAAAAATCCAAATACAACCGATTGATTTTGCAACTATGAGACAAGTCAACCAAGTGTCATGTTTTGTTAGACTCTAGAAAATTCATTTCATCGTTTATTGCTTTTGCCATAATTCAGCATCCAATGAGGATATAACTTCTTTAAGGCTTAATGAATCTTCTTTCAATGTATAAACCAAGTTCATACTCTTTAGCAATTTTAGCTTTCTTACCTCCTTGAGGTTCTATAACATCTTGTATGATGTTTTCATAACTATTTCTAATTACATGAATGTGATTAGATATAGTGCCCCCACTAGTTCTTAATTTTTAAAGGGAAATTTATTTTGCCCCCACTAATGTCGTGCTCCCATTAGAGCCCCCACTAGTGCCCCCACTATTCTTTAGTTAAAGGGGTAAATATTTACATAGAATTCGACATCTTTTAAATTCTATGATCACTTTAACATTTAGGTCATAAAACCTATATGTTTCGTTATTTATCGCATACCCGATGAATACACATTCATAGGCTCTACTAGTGAGTTCAACTCTCTTGGGGTCCAGGATCTTAATATAGTCCAGACAATCCCAAGTTCGAAAAATAAGACAAGTTGGATTGTCTTTTCTTCAAAAATTTCTCAATTAGAATTTTTGTTCTTAGACTTGGGTACTCTATAAATTTCAATTTTCGTTATAAAAAATTGAACATTCAAGCATATCAATTTTATTTTTCCAAAGTTCACAGTCATCAATAAATATGATAAAAATATTATTTTATCATTTCTAATTTATGTGTCATCAAATTAACACATATCATTATGTTTAGAGATTCATATCCTCTAAATTCTAATTTATATGAACTTTTGATTCATATATCTTGACTGCAATAAATAAAATTGTTTAATTATATAACTTCGGAATTAAGTCCAAGTTACTCAAGTTTAAAAATTAAACACTTGTTCGTGATCAATTTTGATATGTCAAATATTAAAATCACACAACTAATAACATAGAAGGAGAATTTAATTTTTAACATACCATCAAAGTGCAATCTTTTTCCACAAGAGTGCATGGTACACAAGTCTCTCTTTAAGTCTGAGTCAACTCAGTCTTATTCAATAGAAATCTGAAATTCAGATTCTTTCTTAAACATAAATAGAATTTCACAATTCCATTTATTTTTCTTATTGCATATTTACAAGTTTGGATTATGTAAAGCGATCGATGCATATGTTTATCAATTCTTGTTAAAGATTTGAAAACCAGTACGTGATATCAATGTTTAAACAAAACACTTTTAGAATTCACCATAACAAAATAACAGCCTTGCATTATTTTATTTTCCGCTCCAAACAATTTTTTATGTTTTGTAACAAACTAAACTTGTTTGGTTCTGTAACAAATAATTTGTTTTGTAACAAATTATTGTTTTCATCAAATAAATTTTTAGTAACTAATAATTTGTTTTTGTAACAAATTATTGTTTTCATCAAATAAATTTTTAGTAACTAATAATTTGTTTTGTAACAAATTATTGTTTTCATCAAATAAATTTTTAGTGTTGTTGATTGAAACAACAATCACTTCATCGTTTCATTCGAAAGATGTAAATCTATAGCTTGATTTATCCTTAATGTATTTAGGGATAACTTAACCTTAATATGTAACTTCTTCGGTAGACATAGCAGATCGAAACGTCTTAAAATTGTTGTTTTTGGATTTCCAAACTGTTAAATTTGAATTTCCAAATTTATCATCTACCGAAGTTGTTACTAGGTTGAGTCACGACCAGGTCGCTCTCTTTAAGACGTTTCGTGGCACTACCCAAAGTTGTGCAAGGTAGACTATCAACCACGCCGCCTCCAGGATAAAACAAGCCCAGCTACAACTGTTCGATTAACTACTGCACTGTAGAAAAGTCGTTCGAGAATTACACCCTCAAAATATGGCTCAATCGTTTGATCGAAGCCACTCGATACGGTACGTAACCGCTCTATTCGAAACCGTTCAAATTAATATGGTATTATTACCATTCTATTATGGTGCTGAGACCACTCAAATATGGTGTTACCACCATTCTAACTTCTCCAAAACATGAATATGGCACTACGACCACTCAAATATGGTGATAACACCATTTCTCCTTAAAATTATTAAAATAATATATATACTGTTAAGATCATTCTTTAATATGATCTTAATAGTACTCTATATTCCGAAGAATCATATATTATCGAAGGGAATATGAACTTAAGACCAAGGGACTATGGTCTTAAGAACACTCTTAATACCGAAGGGACAGAAAGGAGTAGAAGCAGAAGAAACTTGTTAAAAACAAGTAGGAGGGAGAAGAGAGGAAAAAACACAGGAAGCATCGACTGTGAATTTTCGGTGCAAAGAATCAAATGGGGCGAGCTCTCCTTTTATAGGGAGAGTTTGTAACAAAAAACGAGTGACTTGGGGATTAAGTTTGCTTAATCCTTAAGCAAACGCGTTTTGTTTCTTAATTGGATATATCCGGAAGTTTCTGGATATGCTTTTGGATCGGGTCGGATCGTAACAAATTTATTTGTTACGCGTAGCGCTTACGGATAATGATTAAATTAATTAATTAATTAATTTAACATTTTCAAGTGACAAAAAAATATATATCAAATTTTTTTTTTTTTTAAGCGTTCACCCGTTCATAAAATTGGGTACCCCAAGGGCACACCCTTGGAGGTCACTTTTCCCATATATAAACACTTACTAGTTGGGGTGACCCTTCAATGTGGGACATTTTTAAGTCACACCCACACACTAGTTTTTTCATAGTGTTTTTCTTTCCAATTTTCTTCACTAGAATTAACTAGTGTTCCAACAATGTTTCTAGTTTGATTCTATCAGGTTGATGAGTTGCTAGCTCTTGGAGTCAATGTAACTGTGTACAATGGACAAGTAAGTGTTCTTTTTAAAAAACTCGGTATCCGGCCCAAATACCGATTGTTCTTTTCTATTAGTAATCTTGCAATTCTTTTTTTTTACTGTTATAGCTTGATCTCATTTGTGCAACCAAGGGAACTGAATCTTGGCTCAAGAAACTCAAGTAAGCAACCTCTCATTTATTTATTCACCCCTCAACTTTGGTGAAAGCAAACATCAATTTTCATAATTGTATTTTTTTTTATTACTTTTTGTGTTACTTGTGTAGATGGCCAGGCCTTAAAAACTTTTTGAGGAAAGACAGAACTCCTCTATATTGCGGAAGTGAAAGAAAGACCAAAGGCTTCTTTAAGTCATATGAAAACCTAAACTTCTATTGGATACTTGATGCTGGCCATTTTGTAAGTCAAAATCCATCATCTCAAACACTATATATGCTTCTTTTTCTACCTAAAAAAAAATGTGCTTCTTTTTTAATATGGATATAGCTTCTAAGTATTTGTCTATGCTTATCTTTGTCCATGTATAATTTACTTGGGTCATTGTTGTAGGTACCTATTGATCAGCCATGCATAGCACTAAACATGGTGGGTGCAATTACACAGTCACCAGCGGCTTGA

Protein sequence

>MS.gene91275.t1

MEKLYVFFVTLVFLGFLFYEGKVGALKSEDGLEEWGYVQVRPKAHMFWWLYKSPFRVENPSKPWPIILWLQGGPGGSGVGFGNFVEFGPLDANLEPRNFTWLRKADLLFVDNPVGTGFSFVEDSKLLVKTDEEAATDLTTLLIKIFNNDPSLQKCNLFIFGESYGGKFAVTLGLSALKAIKKGRLKTTLGGVVLANSWISPEDYVFSWGPLLKDMSRIDDNGLQKSNILAERIKQQLEAGEFINATSTWIQLEYVISNSSNFVDFYNFMEDNGSYSATSSTIEKRLFKEISMRRYSKYLTSSNVVNRDLDTLLNGVTKKKLKIIPKNITWYAESVYVIEIFLGEFMKPRIAEVDELLALGVNVTVYNGQLDLICATKGTESWLKKLKWPGLKNFLRKDRTPLYCGSERKTKGFFKSYENLNFYWILDAGHFVPIDQPCIALNMVGAITQSPAA