Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91316.t1 | XP_013469976.2 | 95.9 | 98 | 4 | 0 | 1 | 98 | 1 | 98 | 1.60E-10 | 75.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91316.t1 | A0A3Q7YAN5 | 75.5 | 98 | 16 | 1 | 1 | 98 | 1 | 90 | 8.3e-06 | 59.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049396 | MS.gene91316 | -0.801974 | 6.99E-49 | -1.69E-46 |
| MS.gene054003 | MS.gene91316 | -0.820635 | 6.18E-53 | -1.69E-46 |
| MS.gene054486 | MS.gene91316 | -0.811109 | 8.25E-51 | -1.69E-46 |
| MS.gene055486 | MS.gene91316 | -0.833058 | 6.63E-56 | -1.69E-46 |
| MS.gene055909 | MS.gene91316 | -0.814754 | 1.31E-51 | -1.69E-46 |
| MS.gene055911 | MS.gene91316 | -0.811672 | 6.23E-51 | -1.69E-46 |
| MS.gene056166 | MS.gene91316 | -0.811016 | 8.65E-51 | -1.69E-46 |
| MS.gene056448 | MS.gene91316 | -0.857415 | 1.66E-62 | -1.69E-46 |
| MS.gene056511 | MS.gene91316 | -0.808886 | 2.48E-50 | -1.69E-46 |
| MS.gene057173 | MS.gene91316 | 0.820201 | 7.77E-53 | -1.69E-46 |
| MS.gene058157 | MS.gene91316 | -0.815404 | 9.41E-52 | -1.69E-46 |
| MS.gene059749 | MS.gene91316 | -0.833708 | 4.57E-56 | -1.69E-46 |
| MS.gene060482 | MS.gene91316 | -0.829197 | 5.89E-55 | -1.69E-46 |
| MS.gene060666 | MS.gene91316 | -0.831939 | 1.26E-55 | -1.69E-46 |
| MS.gene060837 | MS.gene91316 | -0.842724 | 2.17E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 46 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACCCGGCGCCGGAGACTTA+TGG | 0.351875 | 1.3:+72886105 | MS.gene91316:CDS |
| CCACCTCGTCAGCAAAATTC+AGG | 0.380629 | 1.3:+72886255 | MS.gene91316:CDS |
| ACAAGGTTACCCTCCACAAC+AGG | 0.383576 | 1.3:+72886161 | MS.gene91316:CDS |
| GAATAGAGGATGGACCTTGC+TGG | 0.394206 | 1.3:-72885952 | None:intergenic |
| TCAAGGCTATCCTCCACAAC+AGG | 0.403285 | 1.3:+72886194 | MS.gene91316:CDS |
| TCTCTGCTGTTGCTGTCTCT+TGG | 0.422721 | 1.3:+72887720 | MS.gene91316:CDS |
| CAGCAAAATTCAGGCGGTGC+TGG | 0.441154 | 1.3:+72886264 | MS.gene91316:CDS |
| TTTCCATAAGTCTCCGGCGC+CGG | 0.444590 | 1.3:-72886108 | None:intergenic |
| TTCCATAAGTCTCCGGCGCC+GGG | 0.453331 | 1.3:-72886107 | None:intergenic |
| AATAGAGGATGGACCTTGCT+GGG | 0.456352 | 1.3:-72885951 | None:intergenic |
| CGCCGACGGGCGGTTGCTGT+TGG | 0.456584 | 1.3:-72885922 | None:intergenic |
| CATGGAATTAATAGGTTACC+CGG | 0.471275 | 1.3:+72886089 | MS.gene91316:intron |
| GTGCTGGTTGCATGGAAGGC+TGG | 0.477733 | 1.3:+72886280 | MS.gene91316:CDS |
| GGCGGTGCTGGTTGCATGGA+AGG | 0.485634 | 1.3:+72886276 | MS.gene91316:CDS |
| TAACCTTGTGGAGGATATCC+TGG | 0.496681 | 1.3:-72886147 | None:intergenic |
| TTCAGGCGGTGCTGGTTGCA+TGG | 0.511069 | 1.3:+72886272 | MS.gene91316:CDS |
| TGCTGGGGAGGAACGCCGAC+GGG | 0.513380 | 1.3:-72885935 | None:intergenic |
| TGCGGTGGGTAGCCCTGTTG+TGG | 0.549001 | 1.3:-72886207 | None:intergenic |
| GAGGATGGACCTTGCTGGGG+AGG | 0.552104 | 1.3:-72885947 | None:intergenic |
| TTGCTGGGGAGGAACGCCGA+CGG | 0.554888 | 1.3:-72885936 | None:intergenic |
| TGTGGAGGATATCCTGGTGG+AGG | 0.557895 | 1.3:-72886141 | None:intergenic |
| TGAGGTGGATAGCCCTGTTG+TGG | 0.565061 | 1.3:-72886174 | None:intergenic |
| ATTAATAGGTTACCCGGCGC+CGG | 0.567543 | 1.3:+72886095 | MS.gene91316:intron |
| GTCGGCGTTCCTCCCCAGCA+AGG | 0.585619 | 1.3:+72885938 | MS.gene91316:CDS |
| TGGGGAGGAACGCCGACGGG+CGG | 0.586625 | 1.3:-72885932 | None:intergenic |
| GGTGGATAGCCCTGTTGTGG+AGG | 0.592582 | 1.3:-72886171 | None:intergenic |
| TACTGAGGAGCATATTGCGG+TGG | 0.605867 | 1.3:-72886222 | None:intergenic |
| AACCAACAGCAACCGCCCGT+CGG | 0.612199 | 1.3:+72885920 | MS.gene91316:CDS |
| GTGGAGGATATCCTGGTGGA+GGG | 0.625281 | 1.3:-72886140 | None:intergenic |
| AAAGATGCTTACCCTCCACC+AGG | 0.636903 | 1.3:+72886129 | MS.gene91316:CDS |
| CAACAGGGCTATCCACCTCA+AGG | 0.638659 | 1.3:+72886177 | MS.gene91316:CDS |
| GGTGGTGGCTGAGCGTACTG+AGG | 0.643562 | 1.3:-72886237 | None:intergenic |
| ACTGAGGAGCATATTGCGGT+GGG | 0.646934 | 1.3:-72886221 | None:intergenic |
| TGTTGTGGAGGGTAACCTTG+TGG | 0.649835 | 1.3:-72886159 | None:intergenic |
| ATAGAGGATGGACCTTGCTG+GGG | 0.654237 | 1.3:-72885950 | None:intergenic |
| GTGGATAGCCCTGTTGTGGA+GGG | 0.654497 | 1.3:-72886170 | None:intergenic |
| CAAGGTTACCCTCCACAACA+GGG | 0.654753 | 1.3:+72886162 | MS.gene91316:CDS |
| CCACCAGGATATCCTCCACA+AGG | 0.654889 | 1.3:+72886144 | MS.gene91316:CDS |
| CAAGGCTATCCTCCACAACA+GGG | 0.660569 | 1.3:+72886195 | MS.gene91316:CDS |
| GGTGGGTAGCCCTGTTGTGG+AGG | 0.665741 | 1.3:-72886204 | None:intergenic |
| GCGTACTGAGGAGCATATTG+CGG | 0.667195 | 1.3:-72886225 | None:intergenic |
| TGTTGTGGAGGATAGCCTTG+AGG | 0.680004 | 1.3:-72886192 | None:intergenic |
| TGTGGAGGATAGCCTTGAGG+TGG | 0.684209 | 1.3:-72886189 | None:intergenic |
| CCTCGTCAGCAAAATTCAGG+CGG | 0.710460 | 1.3:+72886258 | MS.gene91316:CDS |
| CCTTGTGGAGGATATCCTGG+TGG | 0.714352 | 1.3:-72886144 | None:intergenic |
| TGTGGAGGGTAACCTTGTGG+AGG | 0.722140 | 1.3:-72886156 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTGAAATTAAAATTGAA+TGG | + | chr1.3:72886376-72886395 | MS.gene91316:intron | 10.0% |
| !!! | TTTAATTTCAATTTTAACTT+GGG | - | chr1.3:72886370-72886389 | None:intergenic | 10.0% |
| !!! | TTTTAATTTCAATTTTAACT+TGG | - | chr1.3:72886371-72886390 | None:intergenic | 10.0% |
| !! | AAAAGAATAAGAAACTAATA+AGG | - | chr1.3:72887558-72887577 | None:intergenic | 15.0% |
| !! | TTTAATACATATACAAACAA+AGG | - | chr1.3:72886724-72886743 | None:intergenic | 15.0% |
| !!! | TAACAAGCTTTAAAAATTAA+AGG | + | chr1.3:72886952-72886971 | MS.gene91316:intron | 15.0% |
| !!! | TTATTAGTTTCTTATTCTTT+TGG | + | chr1.3:72887557-72887576 | MS.gene91316:intron | 15.0% |
| !!! | TTTTAAATTTCAAGATAAGT+TGG | + | chr1.3:72886751-72886770 | MS.gene91316:intron | 15.0% |
| !!! | TTTTCTTTCTTTATTTTTGT+GGG | + | chr1.3:72886557-72886576 | MS.gene91316:intron | 15.0% |
| !!! | TTTTTAAAGCTTGTTAATTT+AGG | - | chr1.3:72886948-72886967 | None:intergenic | 15.0% |
| !!! | TTTTTCTTTCTTTATTTTTG+TGG | + | chr1.3:72886556-72886575 | MS.gene91316:intron | 15.0% |
| !! | AAATGAAATGAAAGTGATTA+TGG | + | chr1.3:72886405-72886424 | MS.gene91316:intron | 20.0% |
| !! | AATTTGCAAACAGAAAATTA+AGG | - | chr1.3:72886340-72886359 | None:intergenic | 20.0% |
| !! | CTTAAAATATATAAGTCAAG+TGG | + | chr1.3:72887095-72887114 | MS.gene91316:intron | 20.0% |
| !! | GAAAACCAGAAATTAAAATA+AGG | - | chr1.3:72887615-72887634 | None:intergenic | 20.0% |
| !! | TTGACAAACAGAAATTAATA+AGG | - | chr1.3:72887590-72887609 | None:intergenic | 20.0% |
| !!! | CAAAACCTTATTTTAATTTC+TGG | + | chr1.3:72887607-72887626 | MS.gene91316:intron | 20.0% |
| !!! | TTGATATTTTTAAACTCTTG+TGG | - | chr1.3:72887323-72887342 | None:intergenic | 20.0% |
| ! | AAAGAACAAAGATAAACGTA+TGG | - | chr1.3:72887419-72887438 | None:intergenic | 25.0% |
| ! | AAATATATAAGTCAAGTGGA+AGG | + | chr1.3:72887099-72887118 | MS.gene91316:intron | 25.0% |
| ! | AAGATGATAAATTAACATGC+AGG | - | chr1.3:72886017-72886036 | None:intergenic | 25.0% |
| ! | AATATATAAGTCAAGTGGAA+GGG | + | chr1.3:72887100-72887119 | MS.gene91316:intron | 25.0% |
| ! | AATGTGAAAAAAGTAAAGAG+AGG | - | chr1.3:72886638-72886657 | None:intergenic | 25.0% |
| ! | AGTGATTTCATGGAATTAAT+AGG | + | chr1.3:72886081-72886100 | MS.gene91316:intron | 25.0% |
| ! | ATGCATCTAGTAATTTGAAA+AGG | + | chr1.3:72886813-72886832 | MS.gene91316:intron | 25.0% |
| ! | ATTGTTTATAGTTGTTGAGT+AGG | - | chr1.3:72887010-72887029 | None:intergenic | 25.0% |
| ! | CAAAAATAAAGTCAAATGAG+TGG | + | chr1.3:72886852-72886871 | MS.gene91316:intron | 25.0% |
| ! | CTGCAACATTTACAAATTAT+AGG | - | chr1.3:72887691-72887710 | None:intergenic | 25.0% |
| ! | GTGTATAATATATATGCATG+CGG | - | chr1.3:72885982-72886001 | None:intergenic | 25.0% |
| ! | GTTTCAATTAAGTGATTTCA+TGG | + | chr1.3:72886071-72886090 | MS.gene91316:intron | 25.0% |
| ! | TATACAAACAAAGGACAATA+TGG | - | chr1.3:72886715-72886734 | None:intergenic | 25.0% |
| ! | TGCATCTAGTAATTTGAAAA+GGG | + | chr1.3:72886814-72886833 | MS.gene91316:intron | 25.0% |
| !! | TTGCATTAATATGCATTTTG+AGG | - | chr1.3:72887448-72887467 | None:intergenic | 25.0% |
| !!! | AGTAGGTTGGTTTTAATTTT+AGG | - | chr1.3:72886993-72887012 | None:intergenic | 25.0% |
| !!! | ATAAGTTGGTAGTGTTAATT+AGG | + | chr1.3:72886765-72886784 | MS.gene91316:intron | 25.0% |
| !!! | CATTTTTTAAGAAAAGCTGT+CGG | + | chr1.3:72886654-72886673 | MS.gene91316:intron | 25.0% |
| !!! | TAAGTTGGTAGTGTTAATTA+GGG | + | chr1.3:72886766-72886785 | MS.gene91316:intron | 25.0% |
| AATGCAAATGCAACAATTCT+TGG | + | chr1.3:72887461-72887480 | MS.gene91316:intron | 30.0% | |
| AATTTGTAAATGTTGCAGCT+TGG | + | chr1.3:72887693-72887712 | MS.gene91316:intron | 30.0% | |
| ACACAATACTAAAAAGGTGA+AGG | + | chr1.3:72887219-72887238 | MS.gene91316:intron | 30.0% | |
| AGTAAAGAGAGGTTACATTA+AGG | - | chr1.3:72886627-72886646 | None:intergenic | 30.0% | |
| ATAACGTGACGAAAGATAAT+AGG | - | chr1.3:72886515-72886534 | None:intergenic | 30.0% | |
| ATATATAAGTCAAGTGGAAG+GGG | + | chr1.3:72887101-72887120 | MS.gene91316:intron | 30.0% | |
| ATTGGTATATCCGATGATAT+GGG | - | chr1.3:72886584-72886603 | None:intergenic | 30.0% | |
| CTTGAGACACAATACTAAAA+AGG | + | chr1.3:72887213-72887232 | MS.gene91316:intron | 30.0% | |
| GCATCTAGTAATTTGAAAAG+GGG | + | chr1.3:72886815-72886834 | MS.gene91316:intron | 30.0% | |
| GTGTTTGTATAACTGGAAAT+AGG | - | chr1.3:72887525-72887544 | None:intergenic | 30.0% | |
| TGAAAAGGGGTTTAGATTTA+GGG | + | chr1.3:72886828-72886847 | MS.gene91316:intron | 30.0% | |
| TGAAATGAAAGTGATTATGG+AGG | + | chr1.3:72886408-72886427 | MS.gene91316:intron | 30.0% | |
| TTGAAAAGGGGTTTAGATTT+AGG | + | chr1.3:72886827-72886846 | MS.gene91316:intron | 30.0% | |
| TTTATAGTTGTTGAGTAGGT+TGG | - | chr1.3:72887006-72887025 | None:intergenic | 30.0% | |
| TTTGTATAACTGGAAATAGG+TGG | - | chr1.3:72887522-72887541 | None:intergenic | 30.0% | |
| ! | CGTTTATCTTTGTTCTTTTG+TGG | + | chr1.3:72887421-72887440 | MS.gene91316:intron | 30.0% |
| ! | GACAATATACCATTTCTAGA+TGG | - | chr1.3:72887176-72887195 | None:intergenic | 30.0% |
| ! | TGGTATATTGTCTTGTTCAA+CGG | + | chr1.3:72887184-72887203 | MS.gene91316:intron | 30.0% |
| ! | TGTTAATTAGGGGTATGTTT+AGG | + | chr1.3:72886777-72886796 | MS.gene91316:intron | 30.0% |
| !! | AAGTTGGTAGTGTTAATTAG+GGG | + | chr1.3:72886767-72886786 | MS.gene91316:intron | 30.0% |
| AAGAGAGGTTACATTAAGGA+CGG | - | chr1.3:72886623-72886642 | None:intergenic | 35.0% | |
| CAAATGAGTGGCTAGATATA+TGG | + | chr1.3:72886864-72886883 | MS.gene91316:intron | 35.0% | |
| CAGATCAGATTACATCACAT+TGG | - | chr1.3:72887666-72887685 | None:intergenic | 35.0% | |
| CATGGAATTAATAGGTTACC+CGG | + | chr1.3:72886089-72886108 | MS.gene91316:intron | 35.0% | |
| GATTGGTATATCCGATGATA+TGG | - | chr1.3:72886585-72886604 | None:intergenic | 35.0% | |
| GGATATTCATTCAGATCAAG+CGG | + | chr1.3:72886429-72886448 | MS.gene91316:intron | 35.0% | |
| TAAGGAACAATCCAGAAAGA+TGG | - | chr1.3:72886322-72886341 | None:intergenic | 35.0% | |
| TACGTGTGTGTTTGTATAAC+TGG | - | chr1.3:72887532-72887551 | None:intergenic | 35.0% | |
| AATGATGTCAATGACGTGCA+GGG | + | chr1.3:72887145-72887164 | MS.gene91316:intron | 40.0% | |
| AGGGTTTAGCCATCTAGAAA+TGG | + | chr1.3:72887164-72887183 | MS.gene91316:intron | 40.0% | |
| ATGCATGCGGTTAAGAATAG+AGG | - | chr1.3:72885969-72885988 | None:intergenic | 40.0% | |
| ATGCGGTTAAGAATAGAGGA+TGG | - | chr1.3:72885965-72885984 | None:intergenic | 40.0% | |
| TAATGATGTCAATGACGTGC+AGG | + | chr1.3:72887144-72887163 | MS.gene91316:intron | 40.0% | |
| TGAGTGGCTAGATATATGGA+CGG | + | chr1.3:72886868-72886887 | MS.gene91316:intron | 40.0% | |
| ! | GCATCTTTTCCATAAGTCTC+CGG | - | chr1.3:72886117-72886136 | None:intergenic | 40.0% |
| ! | TAAAAAGGTGAAGGCGTATG+TGG | + | chr1.3:72887228-72887247 | MS.gene91316:intron | 40.0% |
| ! | TTTTGTGGGACCCATATCAT+CGG | + | chr1.3:72886571-72886590 | MS.gene91316:intron | 40.0% |
| AATAGAGGATGGACCTTGCT+GGG | - | chr1.3:72885954-72885973 | None:intergenic | 45.0% | |
| AGAGGTTACATTAAGGACGG+AGG | - | chr1.3:72886620-72886639 | None:intergenic | 45.0% | |
| ATAAGTCAAGTGGAAGGGGT+GGG | + | chr1.3:72887105-72887124 | MS.gene91316:intron | 45.0% | |
| ATCTTGGAATTGATCGCTGG+TGG | + | chr1.3:72886456-72886475 | MS.gene91316:intron | 45.0% | |
| CAATCCAGAAAGATGGAGAG+AGG | - | chr1.3:72886315-72886334 | None:intergenic | 45.0% | |
| GAGGTTACATTAAGGACGGA+GGG | - | chr1.3:72886619-72886638 | None:intergenic | 45.0% | |
| GGAGGGAGTAGTATGTAGAT+TGG | - | chr1.3:72886602-72886621 | None:intergenic | 45.0% | |
| TAACCTTGTGGAGGATATCC+TGG | - | chr1.3:72886150-72886169 | None:intergenic | 45.0% | |
| TACTCCTCTCTCCATCTTTC+TGG | + | chr1.3:72886308-72886327 | MS.gene91316:intron | 45.0% | |
| TATAAGTCAAGTGGAAGGGG+TGG | + | chr1.3:72887104-72887123 | MS.gene91316:intron | 45.0% | |
| TGGCTAGATATATGGACGGA+GGG | + | chr1.3:72886872-72886891 | MS.gene91316:intron | 45.0% | |
| !! | TCTAATAATAAAATTAAAAA+AGG | - | chr1.3:72887275-72887294 | None:intergenic | 5.0% |
| AAAGATGCTTACCCTCCACC+AGG | + | chr1.3:72886129-72886148 | MS.gene91316:CDS | 50.0% | |
| ACAAGGTTACCCTCCACAAC+AGG | + | chr1.3:72886161-72886180 | MS.gene91316:CDS | 50.0% | |
| ATAGAGGATGGACCTTGCTG+GGG | - | chr1.3:72885953-72885972 | None:intergenic | 50.0% | |
| ATTAATAGGTTACCCGGCGC+CGG | + | chr1.3:72886095-72886114 | MS.gene91316:intron | 50.0% | |
| CAAGGCTATCCTCCACAACA+GGG | + | chr1.3:72886195-72886214 | MS.gene91316:CDS | 50.0% | |
| CAAGGTTACCCTCCACAACA+GGG | + | chr1.3:72886162-72886181 | MS.gene91316:CDS | 50.0% | |
| CCACCTCGTCAGCAAAATTC+AGG | + | chr1.3:72886255-72886274 | MS.gene91316:CDS | 50.0% | |
| CCTCGTCAGCAAAATTCAGG+CGG | + | chr1.3:72886258-72886277 | MS.gene91316:CDS | 50.0% | |
| GAATAGAGGATGGACCTTGC+TGG | - | chr1.3:72885955-72885974 | None:intergenic | 50.0% | |
| GCGATCTTGGAATTGATCGC+TGG | + | chr1.3:72886453-72886472 | MS.gene91316:intron | 50.0% | |
| GTGGCTAGATATATGGACGG+AGG | + | chr1.3:72886871-72886890 | MS.gene91316:intron | 50.0% | |
| TCAAGGCTATCCTCCACAAC+AGG | + | chr1.3:72886194-72886213 | MS.gene91316:CDS | 50.0% | |
| TCTCTGCTGTTGCTGTCTCT+TGG | + | chr1.3:72887720-72887739 | MS.gene91316:CDS | 50.0% | |
| TGTTGTGGAGGGTAACCTTG+TGG | - | chr1.3:72886162-72886181 | None:intergenic | 50.0% | |
| ! | ACTGAGGAGCATATTGCGGT+GGG | - | chr1.3:72886224-72886243 | None:intergenic | 50.0% |
| ! | CCTGAATTTTGCTGACGAGG+TGG | - | chr1.3:72886258-72886277 | None:intergenic | 50.0% |
| ! | GAATTTTGCTGACGAGGTGG+TGG | - | chr1.3:72886255-72886274 | None:intergenic | 50.0% |
| ! | GCGTACTGAGGAGCATATTG+CGG | - | chr1.3:72886228-72886247 | None:intergenic | 50.0% |
| ! | TACTGAGGAGCATATTGCGG+TGG | - | chr1.3:72886225-72886244 | None:intergenic | 50.0% |
| ! | TGTTGTGGAGGATAGCCTTG+AGG | - | chr1.3:72886195-72886214 | None:intergenic | 50.0% |
| CAACAGGGCTATCCACCTCA+AGG | + | chr1.3:72886177-72886196 | MS.gene91316:CDS | 55.0% | |
| CAGATCAAGCGGTGCGATCT+TGG | + | chr1.3:72886440-72886459 | MS.gene91316:intron | 55.0% | |
| CAGCAAAATTCAGGCGGTGC+TGG | + | chr1.3:72886264-72886283 | MS.gene91316:CDS | 55.0% | |
| CCACCAGGATATCCTCCACA+AGG | + | chr1.3:72886144-72886163 | MS.gene91316:CDS | 55.0% | |
| CCTTGTGGAGGATATCCTGG+TGG | - | chr1.3:72886147-72886166 | None:intergenic | 55.0% | |
| GTGGAGGATATCCTGGTGGA+GGG | - | chr1.3:72886143-72886162 | None:intergenic | 55.0% | |
| GTGGATAGCCCTGTTGTGGA+GGG | - | chr1.3:72886173-72886192 | None:intergenic | 55.0% | |
| TGAGGTGGATAGCCCTGTTG+TGG | - | chr1.3:72886177-72886196 | None:intergenic | 55.0% | |
| TGTGGAGGATATCCTGGTGG+AGG | - | chr1.3:72886144-72886163 | None:intergenic | 55.0% | |
| TGTGGAGGGTAACCTTGTGG+AGG | - | chr1.3:72886159-72886178 | None:intergenic | 55.0% | |
| TTTCCATAAGTCTCCGGCGC+CGG | - | chr1.3:72886111-72886130 | None:intergenic | 55.0% | |
| ! | CCGCCTGAATTTTGCTGACG+AGG | - | chr1.3:72886261-72886280 | None:intergenic | 55.0% |
| ! | TGTGGAGGATAGCCTTGAGG+TGG | - | chr1.3:72886192-72886211 | None:intergenic | 55.0% |
| AACCAACAGCAACCGCCCGT+CGG | + | chr1.3:72885920-72885939 | MS.gene91316:CDS | 60.0% | |
| GGTGGATAGCCCTGTTGTGG+AGG | - | chr1.3:72886174-72886193 | None:intergenic | 60.0% | |
| TTCCATAAGTCTCCGGCGCC+GGG | - | chr1.3:72886110-72886129 | None:intergenic | 60.0% | |
| !! | GTGCTGGTTGCATGGAAGGC+TGG | + | chr1.3:72886280-72886299 | MS.gene91316:CDS | 60.0% |
| !! | TTCAGGCGGTGCTGGTTGCA+TGG | + | chr1.3:72886272-72886291 | MS.gene91316:CDS | 60.0% |
| GAGGATGGACCTTGCTGGGG+AGG | - | chr1.3:72885950-72885969 | None:intergenic | 65.0% | |
| GGTGGGTAGCCCTGTTGTGG+AGG | - | chr1.3:72886207-72886226 | None:intergenic | 65.0% | |
| TGCGGTGGGTAGCCCTGTTG+TGG | - | chr1.3:72886210-72886229 | None:intergenic | 65.0% | |
| TTGCTGGGGAGGAACGCCGA+CGG | - | chr1.3:72885939-72885958 | None:intergenic | 65.0% | |
| ! | GGTGGTGGCTGAGCGTACTG+AGG | - | chr1.3:72886240-72886259 | None:intergenic | 65.0% |
| ! | TACCCGGCGCCGGAGACTTA+TGG | + | chr1.3:72886105-72886124 | MS.gene91316:CDS | 65.0% |
| !! | GGCGGTGCTGGTTGCATGGA+AGG | + | chr1.3:72886276-72886295 | MS.gene91316:CDS | 65.0% |
| GTCGGCGTTCCTCCCCAGCA+AGG | + | chr1.3:72885938-72885957 | MS.gene91316:CDS | 70.0% | |
| TGCTGGGGAGGAACGCCGAC+GGG | - | chr1.3:72885938-72885957 | None:intergenic | 70.0% | |
| CGCCGACGGGCGGTTGCTGT+TGG | - | chr1.3:72885925-72885944 | None:intergenic | 75.0% | |
| TGGGGAGGAACGCCGACGGG+CGG | - | chr1.3:72885935-72885954 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 72885908 | 72887756 | 72885908 | ID=MS.gene91316 |
| chr1.3 | mRNA | 72885908 | 72887756 | 72885908 | ID=MS.gene91316.t1;Parent=MS.gene91316 |
| chr1.3 | exon | 72885908 | 72885959 | 72885908 | ID=MS.gene91316.t1.exon1;Parent=MS.gene91316.t1 |
| chr1.3 | CDS | 72885908 | 72885959 | 72885908 | ID=cds.MS.gene91316.t1;Parent=MS.gene91316.t1 |
| chr1.3 | exon | 72886103 | 72886301 | 72886103 | ID=MS.gene91316.t1.exon2;Parent=MS.gene91316.t1 |
| chr1.3 | CDS | 72886103 | 72886301 | 72886103 | ID=cds.MS.gene91316.t1;Parent=MS.gene91316.t1 |
| chr1.3 | exon | 72887711 | 72887756 | 72887711 | ID=MS.gene91316.t1.exon3;Parent=MS.gene91316.t1 |
| chr1.3 | CDS | 72887711 | 72887756 | 72887711 | ID=cds.MS.gene91316.t1;Parent=MS.gene91316.t1 |
| Gene Sequence |
| Protein sequence |
