Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059749.t1 | XP_024632265.1 | 95.7 | 696 | 29 | 1 | 354 | 1049 | 17 | 711 | 0.00E+00 | 1257.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059749.t1 | Q8L636 | 33.9 | 676 | 316 | 10 | 368 | 1042 | 33 | 578 | 9.0e-89 | 330.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059749.t1 | A0A396JA21 | 95.7 | 696 | 29 | 1 | 354 | 1049 | 17 | 711 | 0.0e+00 | 1257.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051113 | MS.gene059749 | -0.800845 | 1.19E-48 | -1.69E-46 |
| MS.gene055486 | MS.gene059749 | 0.814361 | 1.60E-51 | -1.69E-46 |
| MS.gene059749 | MS.gene060666 | 0.926332 | 5.43E-91 | -1.69E-46 |
| MS.gene059749 | MS.gene060837 | 0.817473 | 3.24E-52 | -1.69E-46 |
| MS.gene059749 | MS.gene062586 | 0.917179 | 7.27E-86 | -1.69E-46 |
| MS.gene059749 | MS.gene064168 | 0.80471 | 1.90E-49 | -1.69E-46 |
| MS.gene059749 | MS.gene065204 | 0.807638 | 4.58E-50 | -1.69E-46 |
| MS.gene059749 | MS.gene08520 | 0.801667 | 8.08E-49 | -1.69E-46 |
| MS.gene059749 | MS.gene23025 | 0.813952 | 1.97E-51 | -1.69E-46 |
| MS.gene059749 | MS.gene25651 | 0.819962 | 8.82E-53 | -1.69E-46 |
| MS.gene059749 | MS.gene31318 | -0.806437 | 8.23E-50 | -1.69E-46 |
| MS.gene059749 | MS.gene48593 | 0.80623 | 9.10E-50 | -1.69E-46 |
| MS.gene059749 | MS.gene49263 | -0.802207 | 6.26E-49 | -1.69E-46 |
| MS.gene059749 | MS.gene49717 | 0.809269 | 2.06E-50 | -1.69E-46 |
| MS.gene059749 | MS.gene58383 | 0.941736 | 2.47E-101 | -1.69E-46 |
| MS.gene059749 | MS.gene61160 | 0.814786 | 1.29E-51 | -1.69E-46 |
| MS.gene059749 | MS.gene61305 | -0.826386 | 2.79E-54 | -1.69E-46 |
| MS.gene059749 | MS.gene71665 | 0.820205 | 7.76E-53 | -1.69E-46 |
| MS.gene059749 | MS.gene71666 | 0.817203 | 3.73E-52 | -1.69E-46 |
| MS.gene059749 | MS.gene71667 | 0.830443 | 2.93E-55 | -1.69E-46 |
| MS.gene059749 | MS.gene71861 | 0.814733 | 1.33E-51 | -1.69E-46 |
| MS.gene059749 | MS.gene71972 | -0.827735 | 1.33E-54 | -1.69E-46 |
| MS.gene059749 | MS.gene78111 | 0.802443 | 5.60E-49 | -1.69E-46 |
| MS.gene059749 | MS.gene82008 | 0.81985 | 9.35E-53 | -1.69E-46 |
| MS.gene059749 | MS.gene85059 | 0.804134 | 2.50E-49 | -1.69E-46 |
| MS.gene059749 | MS.gene91316 | -0.833708 | 4.57E-56 | -1.69E-46 |
| MS.gene059749 | MS.gene95748 | 0.831105 | 2.02E-55 | -1.69E-46 |
| MS.gene059749 | MS.gene99360 | 0.812399 | 4.32E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059749.t1 | MTR_2g078350 | 81.288 | 497 | 90 | 2 | 473 | 968 | 1 | 495 | 0.0 | 803 |
| MS.gene059749.t1 | MTR_2g078340 | 95.745 | 376 | 15 | 1 | 603 | 978 | 2 | 376 | 0.0 | 730 |
| MS.gene059749.t1 | MTR_2g078240 | 39.319 | 323 | 178 | 7 | 737 | 1042 | 115 | 436 | 2.94e-64 | 224 |
| MS.gene059749.t1 | MTR_2g078240 | 32.432 | 185 | 123 | 2 | 540 | 723 | 55 | 238 | 1.46e-30 | 126 |
| MS.gene059749.t1 | MTR_2g078250 | 35.043 | 117 | 56 | 1 | 358 | 474 | 35 | 131 | 3.19e-20 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059749.t1 | AT1G53210 | 35.749 | 414 | 245 | 7 | 366 | 778 | 31 | 424 | 1.85e-77 | 266 |
| MS.gene059749.t1 | AT1G53210 | 38.838 | 327 | 176 | 4 | 737 | 1042 | 255 | 578 | 6.54e-58 | 211 |
| MS.gene059749.t1 | AT1G29020 | 33.115 | 305 | 182 | 8 | 746 | 1040 | 289 | 581 | 2.11e-42 | 165 |
| MS.gene059749.t1 | AT1G29020 | 24.490 | 392 | 250 | 9 | 368 | 732 | 35 | 407 | 4.38e-31 | 130 |
| MS.gene059749.t1 | AT1G29020 | 33.115 | 305 | 182 | 8 | 746 | 1040 | 256 | 548 | 2.33e-42 | 164 |
| MS.gene059749.t1 | AT1G29020 | 25.538 | 372 | 238 | 9 | 368 | 732 | 35 | 374 | 1.05e-31 | 132 |
| MS.gene059749.t1 | AT1G29025 | 32.581 | 310 | 184 | 7 | 747 | 1041 | 271 | 570 | 6.66e-36 | 145 |
| MS.gene059749.t1 | AT1G29025 | 28.649 | 370 | 234 | 9 | 368 | 725 | 36 | 387 | 1.01e-34 | 141 |
| MS.gene059749.t1 | AT2G34020 | 28.701 | 331 | 213 | 6 | 733 | 1041 | 273 | 602 | 1.67e-35 | 144 |
| MS.gene059749.t1 | AT2G34020 | 26.463 | 393 | 252 | 11 | 366 | 740 | 46 | 419 | 5.16e-33 | 136 |
| MS.gene059749.t1 | AT1G21280 | 34.807 | 181 | 112 | 4 | 38 | 214 | 13 | 191 | 1.84e-32 | 127 |
| MS.gene059749.t1 | AT2G34030 | 29.560 | 318 | 207 | 7 | 741 | 1047 | 253 | 564 | 1.08e-31 | 132 |
| MS.gene059749.t1 | AT2G34030 | 25.000 | 384 | 259 | 10 | 368 | 744 | 36 | 397 | 1.01e-25 | 113 |
| MS.gene059749.t1 | AT2G34020 | 26.374 | 364 | 212 | 7 | 733 | 1041 | 273 | 635 | 9.19e-31 | 130 |
| MS.gene059749.t1 | AT2G34020 | 25.000 | 424 | 252 | 13 | 366 | 740 | 46 | 452 | 3.41e-28 | 122 |
Find 214 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTCATTTATTTCTGATTT+TGG | 0.111752 | 2.4:-20122349 | MS.gene059749:CDS |
| TCCATTGGAAATCAATTTAT+TGG | 0.127818 | 2.4:+20122515 | None:intergenic |
| CCTAATGTAGCTGCCATAAA+TGG | 0.132670 | 2.4:-20114342 | MS.gene059749:CDS |
| TTTGGGTCATTGCAGATTTA+TGG | 0.164534 | 2.4:-20111637 | MS.gene059749:intron |
| TTGAAGGGACATCTTATTTC+TGG | 0.167355 | 2.4:-20113521 | MS.gene059749:CDS |
| CCTGAATCCTTAATTCTTCT+TGG | 0.168153 | 2.4:-20122207 | MS.gene059749:intron |
| CCATGTTCTAATAACATTCT+TGG | 0.194031 | 2.4:-20122369 | MS.gene059749:CDS |
| AAATCTGACTCACCCATTTA+TGG | 0.207244 | 2.4:+20114329 | None:intergenic |
| ATTCCATGGAGAATCATATT+TGG | 0.230860 | 2.4:-20122310 | MS.gene059749:CDS |
| ATTCTTCTTTGGTTATAATT+TGG | 0.231142 | 2.4:+20114003 | None:intergenic |
| ACTAATTTCATTGTCTTTGT+TGG | 0.251278 | 2.4:+20113180 | None:intergenic |
| GCCACTAACAAATTCTTCTT+TGG | 0.253466 | 2.4:+20113992 | None:intergenic |
| CGCCATGTTGACTGAATTCA+TGG | 0.254167 | 2.4:+20114144 | None:intergenic |
| ATGGAAACCTAAAGAAGATT+TGG | 0.261926 | 2.4:-20137600 | MS.gene059749:CDS |
| ACTCATCCCAAATCTTCTTT+AGG | 0.288440 | 2.4:+20137593 | None:intergenic |
| TATCCGGAGTGGTGGAATAA+TGG | 0.300064 | 2.4:-20137187 | MS.gene059749:CDS |
| GAACAAATCTTCAAGATTCT+TGG | 0.301871 | 2.4:-20122276 | MS.gene059749:CDS |
| AGCAATACCAAGAAGAATTA+AGG | 0.303063 | 2.4:+20122200 | None:intergenic |
| AGTTCGTGCGTCACGCTCTT+TGG | 0.311279 | 2.4:+20137342 | None:intergenic |
| CCATTTATGGCAGCTACATT+AGG | 0.318327 | 2.4:+20114342 | None:intergenic |
| ATTGAAGGGTGATAATTATC+AGG | 0.320118 | 2.4:-20137929 | MS.gene059749:CDS |
| GTATCTAATATCATTGGTTA+TGG | 0.321573 | 2.4:-20111431 | MS.gene059749:CDS |
| GATAGGTTATGGCATTACTA+TGG | 0.332693 | 2.4:-20115056 | MS.gene059749:intron |
| CGCAAATTGGGCTTCTTGAA+TGG | 0.344620 | 2.4:-20137868 | MS.gene059749:CDS |
| CCAAGAAGAATTAAGGATTC+AGG | 0.344838 | 2.4:+20122207 | None:intergenic |
| TATCCAAAGCATGCTTTGTT+TGG | 0.347188 | 2.4:+20113952 | None:intergenic |
| AGAATTTGAGTTTATCCATT+TGG | 0.348639 | 2.4:+20113132 | None:intergenic |
| GGGCGTGGCAAGGCTCCTTT+TGG | 0.355683 | 2.4:-20137106 | MS.gene059749:CDS |
| GTGGGAAGTGTACTTGCAAC+TGG | 0.357118 | 2.4:-20137537 | MS.gene059749:CDS |
| CCATTGGAAATCAATTTATT+GGG | 0.359879 | 2.4:+20122516 | None:intergenic |
| CCTTCAATTGAGGTCAGAAT+TGG | 0.360400 | 2.4:-20137662 | MS.gene059749:CDS |
| CAGAGTGTTGCTGCTTACTA+TGG | 0.363405 | 2.4:-20137619 | MS.gene059749:CDS |
| ACTTCTTGCTTCAAGATCAT+TGG | 0.366067 | 2.4:-20137211 | MS.gene059749:CDS |
| ATCTATGAACAAAATGTATC+AGG | 0.369645 | 2.4:-20113910 | MS.gene059749:intron |
| GTGTTTATGAACAACATTCT+TGG | 0.370916 | 2.4:-20111610 | MS.gene059749:CDS |
| ACCAAAGAAGAATTTGTTAG+TGG | 0.372618 | 2.4:-20113993 | MS.gene059749:CDS |
| AAGTCATGCTCAAAATGATA+TGG | 0.374538 | 2.4:-20113492 | MS.gene059749:CDS |
| TTCGTTCCATTGTAAGTTGA+AGG | 0.375748 | 2.4:+20137289 | None:intergenic |
| AGTGAGAATGAATTTGTTGA+TGG | 0.383299 | 2.4:-20113160 | MS.gene059749:CDS |
| TTTCCGTTTGAATCACCATT+TGG | 0.383940 | 2.4:+20138033 | None:intergenic |
| ACATGACAAATATTCATATC+AGG | 0.384570 | 2.4:+20137955 | None:intergenic |
| CTTCAAGATCATTGGCTATC+CGG | 0.386009 | 2.4:-20137203 | MS.gene059749:CDS |
| ATAATAGCACTTCATGTTCA+AGG | 0.391160 | 2.4:-20122549 | MS.gene059749:intron |
| TAACCATGCAGTCACCCCTT+TGG | 0.396965 | 2.4:+20112645 | None:intergenic |
| TAACCAAACAAAGCATGCTT+TGG | 0.398521 | 2.4:-20113955 | MS.gene059749:CDS |
| ATTAGATACAAGAGGTATGT+TGG | 0.398858 | 2.4:+20111445 | None:intergenic |
| TCTTCCATTTGATGAATATG+AGG | 0.402559 | 2.4:+20120997 | None:intergenic |
| TCCTCAATCTCGCTTGCATC+TGG | 0.403863 | 2.4:+20137832 | None:intergenic |
| CCTCTTGTATCTAATATCAT+TGG | 0.406295 | 2.4:-20111437 | MS.gene059749:CDS |
| ATCTAACAACATACCATGGC+TGG | 0.406776 | 2.4:-20138120 | None:intergenic |
| GGCAATTGTTTGTATTGTGA+TGG | 0.409059 | 2.4:-20111515 | MS.gene059749:CDS |
| TTGTTGATGGTTTCACCAAA+TGG | 0.409569 | 2.4:-20113147 | MS.gene059749:CDS |
| AGGTTATTCGAGCAAGTTGA+TGG | 0.409987 | 2.4:-20113319 | MS.gene059749:CDS |
| TGGAATAATGGGCGAGGGAG+TGG | 0.411709 | 2.4:-20137175 | MS.gene059749:CDS |
| ATCCGGAGTGGTGGAATAAT+GGG | 0.412862 | 2.4:-20137186 | MS.gene059749:CDS |
| GACCTCAATTGAAGGATTTG+TGG | 0.414583 | 2.4:+20137670 | None:intergenic |
| GAGTATTGTAAACAAATGTA+TGG | 0.419297 | 2.4:-20122399 | MS.gene059749:CDS |
| TTTCGCGCAAAACGCAAATT+GGG | 0.421405 | 2.4:-20137880 | MS.gene059749:CDS |
| GAAGTAAAAGAGTTGTTGCT+TGG | 0.423281 | 2.4:-20114101 | MS.gene059749:CDS |
| CAAGTAGAGCTTGCACTTGT+GGG | 0.424193 | 2.4:-20137555 | MS.gene059749:CDS |
| TGGAAACCTAAAGAAGATTT+GGG | 0.426003 | 2.4:-20137599 | MS.gene059749:CDS |
| CAATAGAAAAGTGTTGTTGT+AGG | 0.428167 | 2.4:+20137701 | None:intergenic |
| TGGTGTGTCAAGACAGAATT+TGG | 0.429886 | 2.4:+20137058 | None:intergenic |
| ACTGGAGTTGGATTGTTAGC+TGG | 0.429890 | 2.4:-20121109 | MS.gene059749:CDS |
| AACCTTGACAGATGATCAAT+GGG | 0.433617 | 2.4:-20137014 | MS.gene059749:CDS |
| CCAATTCTGACCTCAATTGA+AGG | 0.435429 | 2.4:+20137662 | None:intergenic |
| GCGAAAAGCATTACGCATAC+TGG | 0.435873 | 2.4:+20137897 | None:intergenic |
| GAACAACATTCTTGGCTTTG+TGG | 0.441869 | 2.4:-20111602 | MS.gene059749:CDS |
| CCCAATAAATTGATTTCCAA+TGG | 0.444689 | 2.4:-20122516 | MS.gene059749:CDS |
| TGCTCAAGTTGTGGAAGAAT+CGG | 0.448324 | 2.4:-20137244 | MS.gene059749:CDS |
| GATACCTCATATTCATCAAA+TGG | 0.449371 | 2.4:-20121001 | MS.gene059749:CDS |
| CACTGGACTTTCAAGTGATA+AGG | 0.450927 | 2.4:-20121155 | MS.gene059749:CDS |
| TATGAGTACTTGTTATTCCA+TGG | 0.456039 | 2.4:-20122324 | MS.gene059749:CDS |
| TTTCTCACGTGTTCAATCCA+TGG | 0.456370 | 2.4:+20113554 | None:intergenic |
| TCAATTTATTGGGAAGAAAA+CGG | 0.458579 | 2.4:+20122526 | None:intergenic |
| GAGAAAAGAACGTGAATTGA+AGG | 0.458601 | 2.4:-20113537 | MS.gene059749:CDS |
| TGGAAGAGAATCAAACCAAA+GGG | 0.459663 | 2.4:-20112660 | MS.gene059749:CDS |
| CTTAATAATGATAATGAGAA+AGG | 0.459999 | 2.4:-20122453 | MS.gene059749:CDS |
| CCTGCTTCTCACAGTTGTGT+GGG | 0.461639 | 2.4:-20121077 | MS.gene059749:CDS |
| GCCATAGCATATGTGATGTT+GGG | 0.464181 | 2.4:-20112619 | MS.gene059749:CDS |
| GTCCTCTCTGATATTTGTGT+CGG | 0.465420 | 2.4:+20114067 | None:intergenic |
| AGCTCAAAATCTTCTTCTCA+TGG | 0.466725 | 2.4:-20113097 | MS.gene059749:CDS |
| CATCTCATACTTCATTTACC+AGG | 0.467416 | 2.4:-20114888 | MS.gene059749:intron |
| CTAATGTAGCTGCCATAAAT+GGG | 0.468804 | 2.4:-20114341 | MS.gene059749:intron |
| GTAGTGAGGGAGACTCATTT+TGG | 0.469435 | 2.4:-20113256 | MS.gene059749:CDS |
| TTCCTCTTTATTCCCAGCCA+TGG | 0.469477 | 2.4:+20138107 | None:intergenic |
| CATTCTCTGTATCATCGATC+TGG | 0.471145 | 2.4:+20138067 | None:intergenic |
| AACTCAAATTCTAGTAAAGC+AGG | 0.473066 | 2.4:-20113121 | MS.gene059749:CDS |
| CAACCTTGACAGATGATCAA+TGG | 0.475057 | 2.4:-20137015 | MS.gene059749:CDS |
| ATTTGTCATGTTACATTGAA+GGG | 0.476035 | 2.4:-20137943 | MS.gene059749:CDS |
| AGAATAAAACAAGCTTTGAC+TGG | 0.476703 | 2.4:-20120977 | MS.gene059749:intron |
| AAGTAAAAGAGTTGTTGCTT+GGG | 0.476825 | 2.4:-20114100 | MS.gene059749:CDS |
| CTCTAAAATTTGTAGCCAAA+GGG | 0.478062 | 2.4:+20112494 | None:intergenic |
| GGGTGATAATTATCAGGAAT+GGG | 0.480794 | 2.4:-20137923 | MS.gene059749:CDS |
| GCAATTGTTTGTATTGTGAT+GGG | 0.481583 | 2.4:-20111514 | MS.gene059749:CDS |
| ATCTTCAAGATTCTTGGTCC+AGG | 0.484678 | 2.4:-20122270 | MS.gene059749:CDS |
| TTAACTCCATGCTCGTAGCT+TGG | 0.485439 | 2.4:-20137798 | MS.gene059749:CDS |
| GGAGAATCATATTTGGCTGC+TGG | 0.485636 | 2.4:-20122303 | MS.gene059749:CDS |
| TCTCTAAAATTTGTAGCCAA+AGG | 0.487209 | 2.4:+20112493 | None:intergenic |
| AGCCATAGCATATGTGATGT+TGG | 0.487880 | 2.4:-20112620 | MS.gene059749:CDS |
| TTAGATACAAGAGGTATGTT+GGG | 0.494840 | 2.4:+20111446 | None:intergenic |
| TCCTGCTTCTCACAGTTGTG+TGG | 0.499987 | 2.4:-20121078 | MS.gene059749:CDS |
| TAGAAAGATGGCAAGAATCA+TGG | 0.500404 | 2.4:-20115023 | MS.gene059749:CDS |
| AGGGTGATAATTATCAGGAA+TGG | 0.505668 | 2.4:-20137924 | MS.gene059749:CDS |
| CCCACACAACTGTGAGAAGC+AGG | 0.506345 | 2.4:+20121077 | None:intergenic |
| CAGATCGATGATACAGAGAA+TGG | 0.507182 | 2.4:-20138066 | MS.gene059749:CDS |
| TTGATAAAGATGCTATCAAA+AGG | 0.508297 | 2.4:-20113439 | MS.gene059749:intron |
| CACCATGACAGAAATGTTGT+TGG | 0.509556 | 2.4:-20137040 | MS.gene059749:CDS |
| GAGTATGCTTCCACTGGAGT+TGG | 0.510075 | 2.4:-20121121 | MS.gene059749:CDS |
| CCTCACTACTTTCTCTAACT+CGG | 0.512226 | 2.4:+20113270 | None:intergenic |
| AAAGGTGTTGATTCTAGTAC+AGG | 0.514064 | 2.4:-20137133 | MS.gene059749:CDS |
| CTGCTTCTCACAGTTGTGTG+GGG | 0.517244 | 2.4:-20121076 | MS.gene059749:CDS |
| ACCAGATGCAAGCGAGATTG+AGG | 0.520500 | 2.4:-20137833 | MS.gene059749:CDS |
| GAGTAGGAATCTGCATTATG+AGG | 0.520550 | 2.4:+20114981 | None:intergenic |
| TACTATTACCTACTATGATA+CGG | 0.522685 | 2.4:-20137743 | MS.gene059749:CDS |
| CAGCAACACTCTGACCACTT+TGG | 0.524103 | 2.4:+20137629 | None:intergenic |
| TGGTGCAAAATGAGCAGCAT+TGG | 0.524191 | 2.4:+20137078 | None:intergenic |
| GCAGCATTGGCAACACCAAA+AGG | 0.524289 | 2.4:+20137091 | None:intergenic |
| AAGCCAAATGGTGATTCAAA+CGG | 0.525232 | 2.4:-20138036 | MS.gene059749:CDS |
| ACAAGTAGAGCTTGCACTTG+TGG | 0.527293 | 2.4:-20137556 | MS.gene059749:CDS |
| GGAAGATGTTGAGAAGGTAA+TGG | 0.527786 | 2.4:-20112680 | MS.gene059749:CDS |
| CATTGATCATCTGTCAAGGT+TGG | 0.528527 | 2.4:+20137016 | None:intergenic |
| TGATACGGTAAAAGAGTTGT+GGG | 0.529617 | 2.4:-20137728 | MS.gene059749:CDS |
| TCTAGTACAGGACGTGGGCG+TGG | 0.532114 | 2.4:-20137121 | MS.gene059749:CDS |
| TATTTGTCATGTTACATTGA+AGG | 0.534297 | 2.4:-20137944 | MS.gene059749:CDS |
| CAAAAGATCCTAGCTGAGGA+TGG | 0.534878 | 2.4:-20114369 | MS.gene059749:CDS |
| TACAGGACGTGGGCGTGGCA+AGG | 0.535982 | 2.4:-20137116 | MS.gene059749:CDS |
| CAAGCGAGATTGAGGATTGG+TGG | 0.536773 | 2.4:-20137825 | MS.gene059749:CDS |
| TTCAGCGGATGTACTGGTGG+TGG | 0.537087 | 2.4:-20111536 | MS.gene059749:CDS |
| GCGCAAGAGTATGCTTCCAC+TGG | 0.540034 | 2.4:-20121127 | MS.gene059749:CDS |
| TACTTCTCACACAATGTATG+AGG | 0.540505 | 2.4:-20112425 | MS.gene059749:intron |
| TCCCCATTGATCATCTGTCA+AGG | 0.542535 | 2.4:+20137012 | None:intergenic |
| AAATCTATCTGCTCAAGTTG+TGG | 0.542565 | 2.4:-20137253 | MS.gene059749:CDS |
| AAAGGTAACAGTAAAGGTAA+AGG | 0.542658 | 2.4:-20137151 | MS.gene059749:CDS |
| GGATGTCCACAGAGGAAAAG+TGG | 0.542719 | 2.4:+20111471 | None:intergenic |
| AGTATTGTAAACAAATGTAT+GGG | 0.543326 | 2.4:-20122398 | MS.gene059749:CDS |
| GTAGAGAAAGAGAACAGAGT+AGG | 0.543401 | 2.4:+20114965 | None:intergenic |
| CACTTCAAATGAAAAGCTGA+CGG | 0.543604 | 2.4:-20136948 | MS.gene059749:CDS |
| AAACCAAAGGGGTGACTGCA+TGG | 0.544322 | 2.4:-20112648 | MS.gene059749:CDS |
| TGAATCTTCTTCTAATTCAG+AGG | 0.544738 | 2.4:-20122421 | MS.gene059749:CDS |
| TTGAACATCATCAACTCCAT+TGG | 0.546197 | 2.4:+20122500 | None:intergenic |
| AATATTCATATCAGGATGAT+CGG | 0.551255 | 2.4:+20137963 | None:intergenic |
| TTCGAGCAAGTTGATGGCGA+TGG | 0.551497 | 2.4:-20113313 | MS.gene059749:CDS |
| GGCCACAAATCCTTCAATTG+AGG | 0.552319 | 2.4:-20137672 | MS.gene059749:CDS |
| CGAGTTAGAGAAAGTAGTGA+GGG | 0.552437 | 2.4:-20113269 | MS.gene059749:CDS |
| GCTAGCTTCTTTGATTGCTG+AGG | 0.553027 | 2.4:+20112465 | None:intergenic |
| TCCCAACATCACATATGCTA+TGG | 0.553481 | 2.4:+20112618 | None:intergenic |
| TCGGAAGGATGCAGATAGAA+TGG | 0.554437 | 2.4:+20137982 | None:intergenic |
| ATACAAGAGGTATGTTGGGA+AGG | 0.556594 | 2.4:+20111450 | None:intergenic |
| ATGATACGGTAAAAGAGTTG+TGG | 0.560221 | 2.4:-20137729 | MS.gene059749:CDS |
| TATATATGAGAGATATCACT+TGG | 0.563447 | 2.4:-20111564 | MS.gene059749:CDS |
| GACCAACAACATTTCTGTCA+TGG | 0.564686 | 2.4:+20137038 | None:intergenic |
| GTAGGTAATAGTAGAGCGAA+AGG | 0.566437 | 2.4:+20137753 | None:intergenic |
| GGATATAGACACTAGAAAGA+TGG | 0.566650 | 2.4:-20115035 | MS.gene059749:CDS |
| CTAACTCGGATCTTGAAACA+TGG | 0.570677 | 2.4:+20113284 | None:intergenic |
| TAGGAGTTCCATCCTCAGCT+AGG | 0.570837 | 2.4:+20114361 | None:intergenic |
| CAGCCAAATATGATTCTCCA+TGG | 0.571361 | 2.4:+20122307 | None:intergenic |
| AGATCGATGATACAGAGAAT+GGG | 0.573160 | 2.4:-20138065 | MS.gene059749:CDS |
| AATGGGTCGAAGAAGCCAAA+TGG | 0.576007 | 2.4:-20138048 | MS.gene059749:CDS |
| TACCATGGCTGGGAATAAAG+AGG | 0.576411 | 2.4:-20138109 | None:intergenic |
| CCAAGAATGTTATTAGAACA+TGG | 0.576847 | 2.4:+20122369 | None:intergenic |
| AATGGGCGAGGGAGTGGCAA+AGG | 0.579123 | 2.4:-20137169 | MS.gene059749:CDS |
| CATGCTCAAAATGATATGGT+TGG | 0.579422 | 2.4:-20113488 | MS.gene059749:CDS |
| AATGATGAGAGAAACTATCA+AGG | 0.581313 | 2.4:+20114925 | None:intergenic |
| GAGTGGTGGAATAATGGGCG+AGG | 0.581701 | 2.4:-20137181 | MS.gene059749:CDS |
| TGCTTCTCACAGTTGTGTGG+GGG | 0.582840 | 2.4:-20121075 | MS.gene059749:CDS |
| CCGAGTTAGAGAAAGTAGTG+AGG | 0.583038 | 2.4:-20113270 | MS.gene059749:CDS |
| GGATAGAAAGTACCTCCCTA+AGG | 0.588674 | 2.4:-20113934 | MS.gene059749:CDS |
| GGTAGGATGCTCAATGATGA+TGG | 0.588759 | 2.4:-20113467 | MS.gene059749:CDS |
| TTCATATCAGGATGATCGGA+AGG | 0.589350 | 2.4:+20137967 | None:intergenic |
| TGGGAAGTGTACTTGCAACT+GGG | 0.590684 | 2.4:-20137536 | MS.gene059749:CDS |
| TCTAACAACATACCATGGCT+GGG | 0.590867 | 2.4:-20138119 | None:intergenic |
| CGCCCATTATTCCACCACTC+CGG | 0.592013 | 2.4:+20137184 | None:intergenic |
| TGCAGATAGAATGGTGAGGT+CGG | 0.592063 | 2.4:+20137991 | None:intergenic |
| ACTTCAAATGAAAAGCTGAC+GGG | 0.592597 | 2.4:-20136947 | MS.gene059749:intron |
| GAAGAATTAAGGATTCAGGA+AGG | 0.595239 | 2.4:+20122211 | None:intergenic |
| AGTGGCAAAGGTAACAGTAA+AGG | 0.596027 | 2.4:-20137157 | MS.gene059749:CDS |
| GGCAGTCCTTCAACTTACAA+TGG | 0.597753 | 2.4:-20137295 | MS.gene059749:CDS |
| GACATGGGAAGATGTTGAGA+AGG | 0.598738 | 2.4:-20112686 | MS.gene059749:CDS |
| GGAATCTGCATTATGAGGAG+TGG | 0.600129 | 2.4:+20114986 | None:intergenic |
| AAGAATTAAGGATTCAGGAA+GGG | 0.601558 | 2.4:+20122212 | None:intergenic |
| TGGTAAGGCTGTAGATGCAG+AGG | 0.605117 | 2.4:-20113236 | MS.gene059749:CDS |
| ATGCAAGCGAGATTGAGGAT+TGG | 0.606584 | 2.4:-20137828 | MS.gene059749:CDS |
| CTGGGCTGCTGATTTGAGCA+AGG | 0.607292 | 2.4:-20137518 | MS.gene059749:CDS |
| TGTTGGCATCAAGATCATGA+AGG | 0.608130 | 2.4:+20113197 | None:intergenic |
| AGAAAAGAACGTGAATTGAA+GGG | 0.610687 | 2.4:-20113536 | MS.gene059749:CDS |
| AGAGCGTGACGCACGAACTG+AGG | 0.611832 | 2.4:-20137338 | MS.gene059749:CDS |
| TCATTGGCTATCCGGAGTGG+TGG | 0.612964 | 2.4:-20137195 | MS.gene059749:CDS |
| ATGGAAGAGAATCAAACCAA+AGG | 0.619841 | 2.4:-20112661 | MS.gene059749:CDS |
| CTCAAAATGATATGGTTGGT+AGG | 0.623371 | 2.4:-20113484 | MS.gene059749:CDS |
| CACAACTGTGAGAAGCAGGA+TGG | 0.623998 | 2.4:+20121081 | None:intergenic |
| GTTGATTCTAGTACAGGACG+TGG | 0.630010 | 2.4:-20137127 | MS.gene059749:CDS |
| AGCTAACAATCCAACTCCAG+TGG | 0.632470 | 2.4:+20121111 | None:intergenic |
| TACCATGAATTCAGTCAACA+TGG | 0.636729 | 2.4:-20114146 | MS.gene059749:CDS |
| TGTTCATAGATTCCTTAGGG+AGG | 0.638172 | 2.4:+20113922 | None:intergenic |
| GCGTGACGCACGAACTGAGG+CGG | 0.638341 | 2.4:-20137335 | MS.gene059749:CDS |
| TGTAAGTTGAAGGACTGCCA+TGG | 0.641193 | 2.4:+20137299 | None:intergenic |
| TTGCTTGCCAACAATAACAC+AGG | 0.646292 | 2.4:+20121051 | None:intergenic |
| AGTGGTGGAATAATGGGCGA+GGG | 0.647831 | 2.4:-20137180 | MS.gene059749:CDS |
| AGATCATTGGCTATCCGGAG+TGG | 0.668160 | 2.4:-20137198 | MS.gene059749:CDS |
| TCTACAAAAGATCCTAGCTG+AGG | 0.670159 | 2.4:-20114373 | MS.gene059749:CDS |
| GAATCATATTTGGCTGCTGG+AGG | 0.671094 | 2.4:-20122300 | MS.gene059749:CDS |
| TCAAACGGAAAGAAGCATGT+CGG | 0.675570 | 2.4:-20138021 | MS.gene059749:CDS |
| AAAAGTGGAACGAAAACTAG+TGG | 0.676799 | 2.4:+20111486 | None:intergenic |
| CCAATGATATTAGATACAAG+AGG | 0.680585 | 2.4:+20111437 | None:intergenic |
| TTGGCTCGTTGTAACCAAAG+TGG | 0.682859 | 2.4:-20137643 | MS.gene059749:CDS |
| TTGATTCTAGTACAGGACGT+GGG | 0.700862 | 2.4:-20137126 | MS.gene059749:CDS |
| GGAAGAGAATCAAACCAAAG+GGG | 0.710553 | 2.4:-20112659 | MS.gene059749:CDS |
| ATATATGAGAGATATCACTT+GGG | 0.731670 | 2.4:-20111563 | MS.gene059749:CDS |
| AGCCGACACAAATATCAGAG+AGG | 0.740662 | 2.4:-20114069 | MS.gene059749:CDS |
| CATGAATTCAGTCAACATGG+CGG | 0.757091 | 2.4:-20114143 | MS.gene059749:CDS |
| GTTGGGAAGGATGTCCACAG+AGG | 0.762076 | 2.4:+20111463 | None:intergenic |
| AGGATGCAGATAGAATGGTG+AGG | 0.781512 | 2.4:+20137987 | None:intergenic |
| ACCTTGACAGATGATCAATG+GGG | 0.833181 | 2.4:-20137013 | MS.gene059749:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 20111396 | 20138127 | 20111396 | ID=MS.gene059749 |
| chr2.4 | mRNA | 20111396 | 20138127 | 20111396 | ID=MS.gene059749.t1;Parent=MS.gene059749 |
| chr2.4 | exon | 20137501 | 20138127 | 20137501 | ID=MS.gene059749.t1.exon1;Parent=MS.gene059749.t1 |
| chr2.4 | CDS | 20137501 | 20138127 | 20137501 | ID=cds.MS.gene059749.t1;Parent=MS.gene059749.t1 |
| chr2.4 | exon | 20136948 | 20137386 | 20136948 | ID=MS.gene059749.t1.exon2;Parent=MS.gene059749.t1 |
| chr2.4 | CDS | 20136948 | 20137386 | 20136948 | ID=cds.MS.gene059749.t1;Parent=MS.gene059749.t1 |
| chr2.4 | exon | 20122208 | 20122564 | 20122208 | ID=MS.gene059749.t1.exon3;Parent=MS.gene059749.t1 |
| chr2.4 | CDS | 20122208 | 20122564 | 20122208 | ID=cds.MS.gene059749.t1;Parent=MS.gene059749.t1 |
| chr2.4 | exon | 20120978 | 20121178 | 20120978 | ID=MS.gene059749.t1.exon4;Parent=MS.gene059749.t1 |
| chr2.4 | CDS | 20120978 | 20121178 | 20120978 | ID=cds.MS.gene059749.t1;Parent=MS.gene059749.t1 |
| chr2.4 | exon | 20114889 | 20115073 | 20114889 | ID=MS.gene059749.t1.exon5;Parent=MS.gene059749.t1 |
| chr2.4 | CDS | 20114889 | 20115073 | 20114889 | ID=cds.MS.gene059749.t1;Parent=MS.gene059749.t1 |
| chr2.4 | exon | 20114342 | 20114487 | 20114342 | ID=MS.gene059749.t1.exon6;Parent=MS.gene059749.t1 |
| chr2.4 | CDS | 20114342 | 20114487 | 20114342 | ID=cds.MS.gene059749.t1;Parent=MS.gene059749.t1 |
| chr2.4 | exon | 20113911 | 20114172 | 20113911 | ID=MS.gene059749.t1.exon7;Parent=MS.gene059749.t1 |
| chr2.4 | CDS | 20113911 | 20114172 | 20113911 | ID=cds.MS.gene059749.t1;Parent=MS.gene059749.t1 |
| chr2.4 | exon | 20113440 | 20113588 | 20113440 | ID=MS.gene059749.t1.exon8;Parent=MS.gene059749.t1 |
| chr2.4 | CDS | 20113440 | 20113588 | 20113440 | ID=cds.MS.gene059749.t1;Parent=MS.gene059749.t1 |
| chr2.4 | exon | 20113087 | 20113339 | 20113087 | ID=MS.gene059749.t1.exon9;Parent=MS.gene059749.t1 |
| chr2.4 | CDS | 20113087 | 20113339 | 20113087 | ID=cds.MS.gene059749.t1;Parent=MS.gene059749.t1 |
| chr2.4 | exon | 20112426 | 20112707 | 20112426 | ID=MS.gene059749.t1.exon10;Parent=MS.gene059749.t1 |
| chr2.4 | CDS | 20112426 | 20112707 | 20112426 | ID=cds.MS.gene059749.t1;Parent=MS.gene059749.t1 |
| chr2.4 | exon | 20111396 | 20111644 | 20111396 | ID=MS.gene059749.t1.exon11;Parent=MS.gene059749.t1 |
| chr2.4 | CDS | 20111396 | 20111644 | 20111396 | ID=cds.MS.gene059749.t1;Parent=MS.gene059749.t1 |
| Gene Sequence |
| Protein sequence |
