AlfalfaGEDB | MS.gene91444

M. sativa cultivar XinJiangDaYe / MS.gene91444

KEGG: K02692
GO: GO:0005575 GO:0008150 GO:0008152 GO:0009521 GO:0009522 GO:0009538 GO:0009987 GO:0015979 GO:0032991 GO:0044237 GO:0098796
PFAM: PF02531.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91444.t1	AGV54746.1	84.2	203	31	1	1	202	1	203	1.70E-91	345.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91444.t1	P32869	78.9	204	40	2	1	202	1	203	4.0e-86	318.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91444.t1	T2DMR3	84.2	203	31	1	1	202	1	203	1.2e-91	345.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049285	MS.gene91444	0.800206	1.61E-48	-1.69E-46
MS.gene049320	MS.gene91444	0.813525	2.45E-51	-1.69E-46
MS.gene049615	MS.gene91444	0.80814	3.59E-50	-1.69E-46
MS.gene05010	MS.gene91444	0.811238	7.74E-51	-1.69E-46
MS.gene050518	MS.gene91444	0.801436	9.01E-49	-1.69E-46
MS.gene050686	MS.gene91444	0.801166	1.02E-48	-1.69E-46
MS.gene05100	MS.gene91444	0.807134	5.86E-50	-1.69E-46
MS.gene051551	MS.gene91444	0.801675	8.05E-49	-1.69E-46
MS.gene052271	MS.gene91444	0.806849	6.74E-50	-1.69E-46
MS.gene053009	MS.gene91444	0.800522	1.39E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91444.t1	MTR_1g104630	81.188	202	25	1	1	202	1	189	1.80e-115	327
MS.gene91444.t1	MTR_5g006130	77.358	212	31	2	1	202	1	205	7.91e-113	320

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91444.t1	AT1G03130	79.290	169	29	1	40	202	32	200	4.97e-96	278
MS.gene91444.t1	AT4G02770	90.210	143	14	0	60	202	62	204	4.18e-95	276

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Find 79 sgRNAs with CRISPR-Local

Find 85 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGGGGAGGGAGTGTT+TGG	0.285103	1.2:+77558216	None:intergenic
AAAGAACAATGTTTGGCTCT+TGG	0.389124	1.2:-77558042	MS.gene91444:CDS
AAAGTGAACCCGGGTCGCCA+AGG	0.500800	1.2:-77557916	MS.gene91444:CDS
AAATTGGGGAGGGAGTGTTT+GGG	0.508064	1.2:+77558217	None:intergenic
AACCCGGGTCGCCAAGGGGT+TGG	0.516971	1.2:-77557910	MS.gene91444:CDS
AAGGGGTTGGTCAGAACTTT+AGG	0.293589	1.2:-77557897	MS.gene91444:CDS
AAGTATTGAACTTCCCCATT+GGG	0.462594	1.2:+77557967	None:intergenic
AAGTGAACCCGGGTCGCCAA+GGG	0.549528	1.2:-77557915	MS.gene91444:CDS
AATGTGGGTGATTGTTTCCA+TGG	0.524862	1.2:+77558354	None:intergenic
AGAGAGAGGATGGGTGAAGA+GGG	0.517214	1.2:+77558407	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CACATAAAATTCCTCAACTT+GGG	+	chr1.2:77558117-77558136	None:intergenic	30.0%
TCACATAAAATTCCTCAACT+TGG	+	chr1.2:77558118-77558137	None:intergenic	30.0%
AGCAAGGAAAGAACAATGTT+TGG	-	chr1.2:77558226-77558245	MS.gene91444:CDS	35.0%
AGTTCAATACTTGCATCCTA+AGG	-	chr1.2:77558319-77558338	MS.gene91444:CDS	35.0%
CTTGCTAACTTGAGAAGATT+GGG	+	chr1.2:77558212-77558231	None:intergenic	35.0%
TAAGAATGTTAGTCCTGTAG+AGG	-	chr1.2:77558409-77558428	MS.gene91444:CDS	35.0%
TGGGAAACACTCTATAGAAT+TGG	+	chr1.2:77558292-77558311	None:intergenic	35.0%
TTGAAATTGTGAGCTTGAGA+GGG	+	chr1.2:77557965-77557984	None:intergenic	35.0%
AATGTGGGTGATTGTTTCCA+TGG	+	chr1.2:77557924-77557943	None:intergenic	40.0%
AGAGATACGGTCATTAGGTT+TGG	+	chr1.2:77557898-77557917	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	77557846	77558451	77557846	ID=MS.gene91444
chr1.2	mRNA	77557846	77558451	77557846	ID=MS.gene91444.t1;Parent=MS.gene91444
chr1.2	exon	77557846	77558451	77557846	ID=MS.gene91444.t1.exon1;Parent=MS.gene91444.t1
chr1.2	CDS	77557846	77558451	77557846	ID=cds.MS.gene91444.t1;Parent=MS.gene91444.t1

Gene Sequence

>MS.gene91444

ATGGCCATGACAACTCAAACCTCCCTCTTCACCCATCCTCTCTCTGGTCCCAAACCTAATGACCGTATCTCTGTACCATGGAAACAATCACCCACATTGTCCTTCACCAATCCAAACCCTCTCAAGCTCACAATTTCAAGAAACATCATAACAGCAGCTGTTGCTGAGGAAGCAACAGAGGCACCAATTGGCTTCACCCCACCTGAGTTAGTCCCAAACACTCCCTCCCCAATTTTCAGTGGCAGCACTGGAGGCCTTTTATGTAAGGCCCAAGTTGAGGAATTTTATGTGATCACATGGGATTCACCAAAAGAACAAATCTTTGAAATGCCTACTGGTGGTGCAGCCATCATGAGGGAAGGTCCCAATCTTCTCAAGTTAGCAAGGAAAGAACAATGTTTGGCTCTTGGAACTACGTTGAGGTCAAAGTACAAGATCAAGTACCAATTCTATAGAGTGTTTCCCAATGGGGAAGTTCAATACTTGCATCCTAAGGATGGTGTGTACCCAGAGAAAGTGAACCCGGGTCGCCAAGGGGTTGGTCAGAACTTTAGGTCTATTGGTAAGAATGTTAGTCCTGTAGAGGTTAAGTTCAGTGGCAAGCAA

Protein sequence

>MS.gene91444.t1

MAMTTQTSLFTHPLSGPKPNDRISVPWKQSPTLSFTNPNPLKLTISRNIITAAVAEEATEAPIGFTPPELVPNTPSPIFSGSTGGLLCKAQVEEFYVITWDSPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTTLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGQNFRSIGKNVSPVEVKFSGKQ