AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05010.t1 MTR_3g064900 95.317 363 17 0 1 363 1 363 0.0 718
MS.gene05010.t1 MTR_6g038640 53.994 363 163 2 1 363 1 359 8.64e-141 404
MS.gene05010.t1 MTR_6g038390 53.186 361 165 2 3 363 5 361 1.39e-139 401
MS.gene05010.t1 MTR_6g038650 52.342 363 164 3 1 363 1 354 7.23e-134 386
MS.gene05010.t1 MTR_6g038350 53.740 361 163 2 3 363 5 361 9.28e-133 384
MS.gene05010.t1 MTR_6g038370 53.740 361 163 2 3 363 5 361 9.28e-133 384
MS.gene05010.t1 MTR_1g097250 49.860 357 175 2 7 363 6 358 1.04e-124 363
MS.gene05010.t1 MTR_6g066230 48.907 366 180 4 1 363 1 362 2.81e-120 352
MS.gene05010.t1 MTR_6g038310 61.947 113 43 0 3 115 5 117 2.45e-39 136
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05010.t1 AT4G09670 51.515 363 172 2 1 363 1 359 2.74e-133 385
MS.gene05010.t1 AT1G66130 51.630 368 169 5 1 363 1 364 9.17e-129 374
MS.gene05010.t1 AT1G34200 45.330 364 183 5 1 363 1 349 6.24e-109 323

Find 108 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGCAAGTATTAGAGATTA+TGG 0.187812 3.4:+66499423 MS.gene05010:CDS
TGAGTCTTTCTACTAATTTC+TGG 0.199630 3.4:-66499468 None:intergenic
GGCCAATGGTGTGCAGTTTA+TGG 0.258616 3.4:+66497273 MS.gene05010:CDS
GCCAACAACTCAAGAATTCT+TGG 0.283873 3.4:+66498951 MS.gene05010:CDS
ACTGCATTGGTGCATCCTTA+TGG 0.311051 3.4:+66499037 MS.gene05010:CDS
TTGTAAACTACCTAGCTATA+AGG 0.315546 3.4:-66499544 None:intergenic
GACGAGGTTGTGGAGGATTC+AGG 0.327013 3.4:+66497106 MS.gene05010:CDS
CTTTCTAATTCCGATGGTAT+TGG 0.331158 3.4:+66497352 MS.gene05010:CDS
GCTTCATTTGACTTCACATT+TGG 0.336307 3.4:+66499291 MS.gene05010:CDS
TCCAAGAATTCTTGAGTTGT+TGG 0.338304 3.4:-66498952 None:intergenic
TTGCAAGTATTAGAGATTAT+GGG 0.349073 3.4:+66499424 MS.gene05010:CDS
CTTGTAGCCCTTTGCCCATA+AGG 0.361945 3.4:-66499052 None:intergenic
GGTCTCAGCCTTCTACAAAA+TGG 0.364608 3.4:+66499445 MS.gene05010:CDS
GAAGCACTAGTCTCCTTGTA+TGG 0.385920 3.4:-66499273 None:intergenic
CTGCATTGGTGCATCCTTAT+GGG 0.395767 3.4:+66499038 MS.gene05010:CDS
CAATGGGTCTATGCATCTTA+AGG 0.404896 3.4:+66499239 MS.gene05010:CDS
ATATTTGCAACTGTTTGATT+TGG 0.405206 3.4:-66499165 None:intergenic
TTGGATGCTCTTGGTGCCCT+TGG 0.407577 3.4:+66499000 MS.gene05010:CDS
CTACCTAGCTATAAGGAAAC+AGG 0.424774 3.4:-66499537 None:intergenic
TTGGCAACATGAACTTCCTC+TGG 0.425477 3.4:-66499354 None:intergenic
AATCACATCTTCTTTGCAAT+GGG 0.432768 3.4:+66499137 MS.gene05010:CDS
TGGCGATGGTGGCGCAGCCT+AGG 0.436432 3.4:-66496949 None:intergenic
ATGGCGGAGATGGTGGCGTT+GGG 0.440061 3.4:-66497001 None:intergenic
TTGGCATTGTTGATGTGCTA+TGG 0.440696 3.4:-66498933 None:intergenic
GCCGCATTTCGTGTGACGTC+GGG 0.450586 3.4:-66499099 None:intergenic
AATTTGTTGATCTTCACATT+GGG 0.460791 3.4:+66499319 MS.gene05010:CDS
GAGAAAGATACAGTGCGTTT+CGG 0.464561 3.4:+66496923 MS.gene05010:CDS
TGATTTGGAGCGGCTTCCTA+TGG 0.465763 3.4:-66497020 None:intergenic
GCATGTGCTGGTGGAGAAGC+CGG 0.466808 3.4:+66497204 MS.gene05010:CDS
CAATCACATCTTCTTTGCAA+TGG 0.469069 3.4:+66499136 MS.gene05010:CDS
TATGGCGGAGATGGTGGCGT+TGG 0.470684 3.4:-66497002 None:intergenic
ATTTCTTTCTCACACGTCCA+TGG 0.472573 3.4:+66499197 MS.gene05010:CDS
TGATGATACAAGAGTTTGCT+AGG 0.472779 3.4:+66499397 MS.gene05010:CDS
GCGGCTTCCTATGGCGGAGA+TGG 0.476940 3.4:-66497011 None:intergenic
CTATGTGGTTGCATCATCCT+AGG 0.478582 3.4:+66497302 MS.gene05010:CDS
CGGTAGCTATGACGAGGTTG+TGG 0.483799 3.4:+66497096 MS.gene05010:CDS
ACAGTGCGTTTCGGCATCCT+AGG 0.485332 3.4:+66496932 MS.gene05010:CDS
TTGCAACTGTTTGATTTGGT+TGG 0.486478 3.4:-66499161 None:intergenic
GTATCATCAAAGCTTCTTGA+GGG 0.492116 3.4:-66499383 None:intergenic
GGAAGCGCGGTGACGGTGGT+TGG 0.503525 3.4:-66499078 None:intergenic
TGTTCCATGTTCACAGTCCT+AGG 0.506149 3.4:-66497319 None:intergenic
TTGTTGATCTTCACATTGGG+TGG 0.508424 3.4:+66499322 MS.gene05010:CDS
TTATCTATAAGTGGTTCCAA+TGG 0.509254 3.4:+66499222 MS.gene05010:CDS
GACGTCGGGAAGCGCGGTGA+CGG 0.509701 3.4:-66499085 None:intergenic
AATTAGTAGAAAGACTCAAC+TGG 0.514181 3.4:+66499473 MS.gene05010:CDS
CCGTAGATTGTTACACTGGC+TGG 0.516890 3.4:-66497076 None:intergenic
AGCTTCTTGAGGGAGCTTGT+TGG 0.517538 3.4:-66499373 None:intergenic
GGCCGCATTTCGTGTGACGT+CGG 0.517811 3.4:-66499100 None:intergenic
GGTCCACTTACAAATTGAAC+GGG 0.518152 3.4:-66497376 None:intergenic
CTTAAGATGCATAGACCCAT+TGG 0.520577 3.4:-66499238 None:intergenic
ATTGATCTTTCTAATTCCGA+TGG 0.523334 3.4:+66497346 MS.gene05010:CDS
AAGCCAGAGTTGGATGCTCT+TGG 0.523659 3.4:+66498991 MS.gene05010:CDS
GCACCAAGAGCATCCAACTC+TGG 0.523813 3.4:-66498994 None:intergenic
ATCCATAAACTGCACACCAT+TGG 0.528802 3.4:-66497275 None:intergenic
TGGTGCATCCTTATGGGCAA+AGG 0.534190 3.4:+66499044 MS.gene05010:CDS
GTGCCCTTGGTGACTTAGCA+TGG 0.534689 3.4:+66499013 MS.gene05010:CDS
CCAGCCAGTGTAACAATCTA+CGG 0.537246 3.4:+66497076 MS.gene05010:CDS
ACATGTAGACTCGTCGGGAG+AGG 0.537706 3.4:-66497148 None:intergenic
CATTAGAGTAAAGCCAGAGT+TGG 0.540850 3.4:+66498981 MS.gene05010:CDS
TATCTATAAGTGGTTCCAAT+GGG 0.541220 3.4:+66499223 MS.gene05010:CDS
GTCGGGAAGCGCGGTGACGG+TGG 0.543015 3.4:-66499082 None:intergenic
TCATCCTAGGACTGTGAACA+TGG 0.546521 3.4:+66497315 MS.gene05010:CDS
GGTGCATCCTTATGGGCAAA+GGG 0.546980 3.4:+66499045 MS.gene05010:CDS
ACCTCACATGTAGACTCGTC+GGG 0.547814 3.4:-66497153 None:intergenic
GAAGCCGGCGGCACTTGATG+TGG 0.549884 3.4:+66497219 MS.gene05010:CDS
TCCGCCACATCAAGTGCCGC+CGG 0.550213 3.4:-66497223 None:intergenic
TGTATCATCAAAGCTTCTTG+AGG 0.553516 3.4:-66499384 None:intergenic
TCCATGGACTTATCTATAAG+TGG 0.554506 3.4:+66499213 MS.gene05010:CDS
AAATTTGTTGATCTTCACAT+TGG 0.555127 3.4:+66499318 MS.gene05010:CDS
GACTTAGCATGGTACTGCAT+TGG 0.559827 3.4:+66499024 MS.gene05010:CDS
AAGCACTAGTCTCCTTGTAT+GGG 0.562955 3.4:-66499272 None:intergenic
AATGGTGTGCAGTTTATGGA+TGG 0.565540 3.4:+66497277 MS.gene05010:CDS
GCTTCCTATGGCGGAGATGG+TGG 0.573189 3.4:-66497008 None:intergenic
GCCGGCGGCACTTGATGTGG+CGG 0.574067 3.4:+66497222 MS.gene05010:CDS
AGGAAGCCGCTCCAAATCAA+AGG 0.578719 3.4:+66497024 MS.gene05010:CDS
TTTGGAGCGGCTTCCTATGG+CGG 0.579701 3.4:-66497017 None:intergenic
GAAGAAGAAGCATGTGCTGG+TGG 0.585956 3.4:+66497195 MS.gene05010:CDS
CGACGAGTCTACATGTGAGG+TGG 0.586001 3.4:+66497155 MS.gene05010:CDS
TCGTGTGACGTCGGGAAGCG+CGG 0.588189 3.4:-66499091 None:intergenic
GACGTCACACGAAATGCGGC+CGG 0.594201 3.4:+66499102 MS.gene05010:CDS
GAGGAAGAAGAAGCATGTGC+TGG 0.594568 3.4:+66497192 MS.gene05010:CDS
TCCCGACGTCACACGAAATG+CGG 0.596125 3.4:+66499098 MS.gene05010:CDS
GGGTCCACTTACAAATTGAA+CGG 0.596830 3.4:-66497377 None:intergenic
AACGCCACCATCTCCGCCAT+AGG 0.596934 3.4:+66497004 MS.gene05010:CDS
CACCTCACATGTAGACTCGT+CGG 0.597850 3.4:-66497154 None:intergenic
GGACTTCATAATCCCATACA+AGG 0.597873 3.4:+66499260 MS.gene05010:CDS
TTAGAAGCTTGTGAGGCCAA+TGG 0.602079 3.4:+66497259 MS.gene05010:CDS
TTGATGCCTTTGATTTGGAG+CGG 0.603131 3.4:-66497030 None:intergenic
AGTTTATGGATGGGACTATG+TGG 0.604295 3.4:+66497287 MS.gene05010:CDS
TTTGATCTTAGAAGCTTGTG+AGG 0.608724 3.4:+66497252 MS.gene05010:CDS
GCTACCGTAGATTGTTACAC+TGG 0.617830 3.4:-66497080 None:intergenic
GACGAGTCTACATGTGAGGT+GGG 0.617838 3.4:+66497156 MS.gene05010:CDS
ACCACTTATAGATAAGTCCA+TGG 0.629957 3.4:-66499214 None:intergenic
TCCCGACGAGTCTACATGTG+AGG 0.632243 3.4:+66497152 MS.gene05010:CDS
TGTGATTGATAATATGACTC+CGG 0.634032 3.4:-66499121 None:intergenic
TAGCTATGACGAGGTTGTGG+AGG 0.640059 3.4:+66497099 MS.gene05010:CDS
TGTGCTGGTGGAGAAGCCGG+CGG 0.649516 3.4:+66497207 MS.gene05010:CDS
TTGAACGGGTCCAATACCAT+CGG 0.652449 3.4:-66497362 None:intergenic
ATGGTGTGCAGTTTATGGAT+GGG 0.666018 3.4:+66497278 MS.gene05010:CDS
CACATGCTTCTTCTTCCTCG+CGG 0.669854 3.4:-66497188 None:intergenic
GGTGGGCGGTTGCTGCCGCG+AGG 0.686221 3.4:+66497173 MS.gene05010:CDS
AGTACCATGCTAAGTCACCA+AGG 0.689002 3.4:-66499017 None:intergenic
GTACCATGCTAAGTCACCAA+GGG 0.692891 3.4:-66499016 None:intergenic
GGTTGTGGAGGATTCAGGTG+TGG 0.695144 3.4:+66497111 MS.gene05010:CDS
GGCGTTGGGAGTGAGAGTAA+TGG 0.710083 3.4:-66496987 None:intergenic
GAGTCTACATGTGAGGTGGG+CGG 0.731573 3.4:+66497159 MS.gene05010:CDS
AATCTACGGTAGCTATGACG+AGG 0.738834 3.4:+66497090 MS.gene05010:CDS
TGGGTGGAATGTGAGACCAG+AGG 0.750850 3.4:+66499338 MS.gene05010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATATTTAGGAAATT+TGG + chr3.4:66498687-66498706 MS.gene05010:intron 10.0%
!! AAAATGTTTATACATTATAA+AGG - chr3.4:66498886-66498905 None:intergenic 10.0%
!! ATATAAGATATAATGAAATA+GGG - chr3.4:66497401-66497420 None:intergenic 10.0%
!! ATTGAACTAAAAAAATATTT+AGG + chr3.4:66498679-66498698 MS.gene05010:intron 10.0%
!! CAACATATATAATTAAATTA+AGG - chr3.4:66497860-66497879 None:intergenic 10.0%
!! TATATAAGATATAATGAAAT+AGG - chr3.4:66497402-66497421 None:intergenic 10.0%
!! AAACAAAAAAAAAATCAGTT+TGG + chr3.4:66498549-66498568 MS.gene05010:intron 15.0%
!! CATATATAATTAAATTAAGG+AGG - chr3.4:66497857-66497876 None:intergenic 15.0%
!! TATAAGATATAATGAAATAG+GGG - chr3.4:66497400-66497419 None:intergenic 15.0%
!! TATATTCAATTAACCTTTAA+TGG + chr3.4:66497672-66497691 MS.gene05010:intron 15.0%
!! TCTATTTAACAAAAACTTAA+GGG - chr3.4:66497592-66497611 None:intergenic 15.0%
!!! AAACTCTAAATTTGTTTATA+AGG + chr3.4:66497435-66497454 MS.gene05010:intron 15.0%
!!! ATTGCAAGTTTTAAAATTAA+AGG + chr3.4:66498223-66498242 MS.gene05010:intron 15.0%
!!! TTGCAAGTTTTAAAATTAAA+GGG + chr3.4:66498224-66498243 MS.gene05010:intron 15.0%
!! AAACATCTATGAAAAGAAAA+CGG + chr3.4:66498136-66498155 MS.gene05010:intron 20.0%
!! CATACTAACAATTTAAATCT+TGG + chr3.4:66498454-66498473 MS.gene05010:intron 20.0%
!! GAAATTTGGATATAAAATTG+AGG + chr3.4:66498701-66498720 MS.gene05010:intron 20.0%
!! GTCTATTTAACAAAAACTTA+AGG - chr3.4:66497593-66497612 None:intergenic 20.0%
!! TACAAGTATTTAGGTAAATT+TGG + chr3.4:66497482-66497501 MS.gene05010:intron 20.0%
!! TATATTTGAGGAAAACTTAA+GGG + chr3.4:66498195-66498214 MS.gene05010:intron 20.0%
!!! AATTGATTTAAGTTCAACAA+TGG - chr3.4:66497708-66497727 None:intergenic 20.0%
!!! ATTTAGGTAAATTTGGAATA+GGG + chr3.4:66497489-66497508 MS.gene05010:intron 20.0%
!!! CAATGTTTAAATTTTGACAA+AGG + chr3.4:66498406-66498425 MS.gene05010:intron 20.0%
!!! TATTTAGGTAAATTTGGAAT+AGG + chr3.4:66497488-66497507 MS.gene05010:intron 20.0%
!!! TGCAAGTTTTAAAATTAAAG+GGG + chr3.4:66498225-66498244 MS.gene05010:intron 20.0%
!!! TTTTTGAAAGATCAATGAAA+TGG - chr3.4:66497971-66497990 None:intergenic 20.0%
! AAATCAATTTAGTAGCACAA+TGG + chr3.4:66498081-66498100 MS.gene05010:intron 25.0%
! AATTAAAAAGCCATAACCTA+TGG - chr3.4:66497797-66497816 None:intergenic 25.0%
! ATAATTAAATTAAGGAGGAG+AGG - chr3.4:66497852-66497871 None:intergenic 25.0%
! ATATTTGCAACTGTTTGATT+TGG - chr3.4:66499168-66499187 None:intergenic 25.0%
! ATTCAATTAACCTTTAATGG+AGG + chr3.4:66497675-66497694 MS.gene05010:intron 25.0%
! ATTTAACAAAAACTTAAGGG+AGG - chr3.4:66497589-66497608 None:intergenic 25.0%
! CAAAAAAAAAATCAGTTTGG+TGG + chr3.4:66498552-66498571 MS.gene05010:intron 25.0%
! CTAACAATTTAAATCTTGGT+AGG + chr3.4:66498458-66498477 MS.gene05010:intron 25.0%
! GTATATTTGAGGAAAACTTA+AGG + chr3.4:66498194-66498213 MS.gene05010:intron 25.0%
! TATATGTTGCACTCATATTA+TGG + chr3.4:66497871-66497890 MS.gene05010:intron 25.0%
! TTGCAAGTATTAGAGATTAT+GGG + chr3.4:66499424-66499443 MS.gene05010:CDS 25.0%
!! TGCTACTAAATTGATTTCTA+AGG - chr3.4:66498078-66498097 None:intergenic 25.0%
!!! AAATTTGTTGATCTTCACAT+TGG + chr3.4:66499318-66499337 MS.gene05010:CDS 25.0%
!!! AAATTTTGATGCCTTTGATT+TGG - chr3.4:66497038-66497057 None:intergenic 25.0%
!!! AATTTGTTGATCTTCACATT+GGG + chr3.4:66499319-66499338 MS.gene05010:CDS 25.0%
!!! AGTGTAAGTTTTAAAACTAG+AGG - chr3.4:66497564-66497583 None:intergenic 25.0%
!!! CAAGTTTTAAAATTAAAGGG+GGG + chr3.4:66498227-66498246 MS.gene05010:intron 25.0%
!!! GCAAGTTTTAAAATTAAAGG+GGG + chr3.4:66498226-66498245 MS.gene05010:intron 25.0%
!!! GTGTAAGTTTTAAAACTAGA+GGG - chr3.4:66497563-66497582 None:intergenic 25.0%
!!! TGTAAGTTTTAAAACTAGAG+GGG - chr3.4:66497562-66497581 None:intergenic 25.0%
AAGTAACAGAGTTAATAGCA+AGG + chr3.4:66498162-66498181 MS.gene05010:intron 30.0%
AATCACATCTTCTTTGCAAT+GGG + chr3.4:66499137-66499156 MS.gene05010:CDS 30.0%
AATTAGTAGAAAGACTCAAC+TGG + chr3.4:66499473-66499492 MS.gene05010:CDS 30.0%
ACATCAAGTGAAAGAGATTA+GGG + chr3.4:66498525-66498544 MS.gene05010:intron 30.0%
AGGAAAAGTGAGAATGAAAT+GGG - chr3.4:66497832-66497851 None:intergenic 30.0%
AGTAACAGAGTTAATAGCAA+GGG + chr3.4:66498163-66498182 MS.gene05010:intron 30.0%
ATAGCTAACAACTATCATTG+AGG + chr3.4:66498745-66498764 MS.gene05010:intron 30.0%
ATTCAAGAAACCATAGGTTA+TGG + chr3.4:66497784-66497803 MS.gene05010:intron 30.0%
ATTGATCTTTCTAATTCCGA+TGG + chr3.4:66497346-66497365 MS.gene05010:CDS 30.0%
CCAGTATACTACAAGTATTT+AGG + chr3.4:66497473-66497492 MS.gene05010:intron 30.0%
CCTAAATACTTGTAGTATAC+TGG - chr3.4:66497476-66497495 None:intergenic 30.0%
GATCAATGAAATGGAATTGA+CGG - chr3.4:66497962-66497981 None:intergenic 30.0%
GTCACTTACATAAAGTTCAA+GGG + chr3.4:66498257-66498276 MS.gene05010:intron 30.0%
GTTGCAAGTATTAGAGATTA+TGG + chr3.4:66499423-66499442 MS.gene05010:CDS 30.0%
TAATCTTATTCGAGACATGA+TGG - chr3.4:66498506-66498525 None:intergenic 30.0%
TACATCAAGTGAAAGAGATT+AGG + chr3.4:66498524-66498543 MS.gene05010:intron 30.0%
TATCTATAAGTGGTTCCAAT+GGG + chr3.4:66499223-66499242 MS.gene05010:CDS 30.0%
TGAGTCTTTCTACTAATTTC+TGG - chr3.4:66499471-66499490 None:intergenic 30.0%
TTATCTATAAGTGGTTCCAA+TGG + chr3.4:66499222-66499241 MS.gene05010:CDS 30.0%
! AAAAAATCAGTTTGGTGGTT+TGG + chr3.4:66498557-66498576 MS.gene05010:intron 30.0%
! AAAAATCAGTTTGGTGGTTT+GGG + chr3.4:66498558-66498577 MS.gene05010:intron 30.0%
! TGATTTAAGTTCAACAATGG+AGG - chr3.4:66497705-66497724 None:intergenic 30.0%
! TGTCACTTACATAAAGTTCA+AGG + chr3.4:66498256-66498275 MS.gene05010:intron 30.0%
! TGTGATTGATAATATGACTC+CGG - chr3.4:66499124-66499143 None:intergenic 30.0%
!! ATTAACAGTGTTGATAGCAA+AGG - chr3.4:66497624-66497643 None:intergenic 30.0%
!! TTTCTCTTTGGAATATGGAT+CGG + chr3.4:66498293-66498312 MS.gene05010:intron 30.0%
!!! GCAATTTTCTCTTTGGAATA+TGG + chr3.4:66498288-66498307 MS.gene05010:intron 30.0%
!!! GTAAGTTTTAAAACTAGAGG+GGG - chr3.4:66497561-66497580 None:intergenic 30.0%
AACTCCTTTAATCCGTTGTT+AGG - chr3.4:66498372-66498391 None:intergenic 35.0%
ACCACTTATAGATAAGTCCA+TGG - chr3.4:66499217-66499236 None:intergenic 35.0%
ACTTACATAAAGTTCAAGGG+AGG + chr3.4:66498260-66498279 MS.gene05010:intron 35.0%
ATTTGAGGAAAACTTAAGGG+AGG + chr3.4:66498198-66498217 MS.gene05010:intron 35.0%
CAATCACATCTTCTTTGCAA+TGG + chr3.4:66499136-66499155 MS.gene05010:CDS 35.0%
CATCAAGTGAAAGAGATTAG+GGG + chr3.4:66498526-66498545 MS.gene05010:intron 35.0%
CCAAACATTCAAGAAACCAT+AGG + chr3.4:66497778-66497797 MS.gene05010:intron 35.0%
CCTATGGTTTCTTGAATGTT+TGG - chr3.4:66497781-66497800 None:intergenic 35.0%
CTTTCTAATTCCGATGGTAT+TGG + chr3.4:66497352-66497371 MS.gene05010:CDS 35.0%
GAGAGTAAGCATCAATGAAA+TGG - chr3.4:66498006-66498025 None:intergenic 35.0%
GAGGAAAAGTGAGAATGAAA+TGG - chr3.4:66497833-66497852 None:intergenic 35.0%
GATGATTCGAATCCTAACAA+CGG + chr3.4:66498357-66498376 MS.gene05010:intron 35.0%
GGAAAAGTGAGAATGAAATG+GGG - chr3.4:66497831-66497850 None:intergenic 35.0%
GGAATTGACGGTTTAAAGAA+AGG - chr3.4:66497950-66497969 None:intergenic 35.0%
GGGAGCTATTTGTATATTTG+AGG + chr3.4:66498183-66498202 MS.gene05010:intron 35.0%
GTATCATCAAAGCTTCTTGA+GGG - chr3.4:66499386-66499405 None:intergenic 35.0%
TCAATTTAGTAGCACAATGG+TGG + chr3.4:66498084-66498103 MS.gene05010:intron 35.0%
TCCATGGACTTATCTATAAG+TGG + chr3.4:66499213-66499232 MS.gene05010:CDS 35.0%
TGTATCATCAAAGCTTCTTG+AGG - chr3.4:66499387-66499406 None:intergenic 35.0%
TTTGATCTTAGAAGCTTGTG+AGG + chr3.4:66497252-66497271 MS.gene05010:CDS 35.0%
! AAAATCAGTTTGGTGGTTTG+GGG + chr3.4:66498559-66498578 MS.gene05010:intron 35.0%
! GCTTCATTTGACTTCACATT+TGG + chr3.4:66499291-66499310 MS.gene05010:CDS 35.0%
! TCCAAGAATTCTTGAGTTGT+TGG - chr3.4:66498955-66498974 None:intergenic 35.0%
! TGATGATACAAGAGTTTGCT+AGG + chr3.4:66499397-66499416 MS.gene05010:CDS 35.0%
!! GAATCCTAACAACGGATTAA+AGG + chr3.4:66498365-66498384 MS.gene05010:intron 35.0%
!! GTGAAAAAGTCTTTAGAGCT+TGG + chr3.4:66499507-66499526 MS.gene05010:CDS 35.0%
!! TTCTCTTTGGAATATGGATC+GGG + chr3.4:66498294-66498313 MS.gene05010:intron 35.0%
!! TTGCAACTGTTTGATTTGGT+TGG - chr3.4:66499164-66499183 None:intergenic 35.0%
!!! ATTTCTGGCCATTTTGTAGA+AGG - chr3.4:66499456-66499475 None:intergenic 35.0%
!!! TGTCATTTTCATAGACCTCA+GGG - chr3.4:66497532-66497551 None:intergenic 35.0%
AATGGTGTGCAGTTTATGGA+TGG + chr3.4:66497277-66497296 MS.gene05010:CDS 40.0%
AGTTTATGGATGGGACTATG+TGG + chr3.4:66497287-66497306 MS.gene05010:CDS 40.0%
ATCCATAAACTGCACACCAT+TGG - chr3.4:66497278-66497297 None:intergenic 40.0%
ATGGTGTGCAGTTTATGGAT+GGG + chr3.4:66497278-66497297 MS.gene05010:CDS 40.0%
ATTTCTTTCTCACACGTCCA+TGG + chr3.4:66499197-66499216 MS.gene05010:CDS 40.0%
CAATGGGTCTATGCATCTTA+AGG + chr3.4:66499239-66499258 MS.gene05010:CDS 40.0%
CATTAGAGTAAAGCCAGAGT+TGG + chr3.4:66498981-66499000 MS.gene05010:CDS 40.0%
CTTAAGATGCATAGACCCAT+TGG - chr3.4:66499241-66499260 None:intergenic 40.0%
GAGAAAGATACAGTGCGTTT+CGG + chr3.4:66496923-66496942 MS.gene05010:CDS 40.0%
GCCAACAACTCAAGAATTCT+TGG + chr3.4:66498951-66498970 MS.gene05010:CDS 40.0%
GGACTTCATAATCCCATACA+AGG + chr3.4:66499260-66499279 MS.gene05010:CDS 40.0%
GGGTCCACTTACAAATTGAA+CGG - chr3.4:66497380-66497399 None:intergenic 40.0%
GGTCCACTTACAAATTGAAC+GGG - chr3.4:66497379-66497398 None:intergenic 40.0%
TGGGGGAATAACATAAGAGT+TGG + chr3.4:66498577-66498596 MS.gene05010:intron 40.0%
TTGGCATTGTTGATGTGCTA+TGG - chr3.4:66498936-66498955 None:intergenic 40.0%
TTGTTGATCTTCACATTGGG+TGG + chr3.4:66499322-66499341 MS.gene05010:CDS 40.0%
! AAATCAGTTTGGTGGTTTGG+GGG + chr3.4:66498560-66498579 MS.gene05010:intron 40.0%
! AAGCACTAGTCTCCTTGTAT+GGG - chr3.4:66499275-66499294 None:intergenic 40.0%
! TGGAGGTTTTCCTCCATTAA+AGG - chr3.4:66497688-66497707 None:intergenic 40.0%
!! AACAGTGTTGATAGCAAAGG+AGG - chr3.4:66497621-66497640 None:intergenic 40.0%
!! GTCATTTTCATAGACCTCAG+GGG - chr3.4:66497531-66497550 None:intergenic 40.0%
!! TTGATGCCTTTGATTTGGAG+CGG - chr3.4:66497033-66497052 None:intergenic 40.0%
!!! AATGGCTCTTGCTAGTTTTC+TGG - chr3.4:66496972-66496991 None:intergenic 40.0%
!!! GTGTCATTTTCATAGACCTC+AGG - chr3.4:66497533-66497552 None:intergenic 40.0%
AATCTACGGTAGCTATGACG+AGG + chr3.4:66497090-66497109 MS.gene05010:CDS 45.0%
AATTACATTCACCTCCCCTG+AGG + chr3.4:66497514-66497533 MS.gene05010:intron 45.0%
AGTACCATGCTAAGTCACCA+AGG - chr3.4:66499020-66499039 None:intergenic 45.0%
CCAGCCAGTGTAACAATCTA+CGG + chr3.4:66497076-66497095 MS.gene05010:CDS 45.0%
CTATGTGGTTGCATCATCCT+AGG + chr3.4:66497302-66497321 MS.gene05010:CDS 45.0%
GACTTAGCATGGTACTGCAT+TGG + chr3.4:66499024-66499043 MS.gene05010:CDS 45.0%
GCTACCGTAGATTGTTACAC+TGG - chr3.4:66497083-66497102 None:intergenic 45.0%
GGACCCGTTCAATTTGTAAG+TGG + chr3.4:66497373-66497392 MS.gene05010:intron 45.0%
GGTCTCAGCCTTCTACAAAA+TGG + chr3.4:66499445-66499464 MS.gene05010:CDS 45.0%
GTACCATGCTAAGTCACCAA+GGG - chr3.4:66499019-66499038 None:intergenic 45.0%
TCATCCTAGGACTGTGAACA+TGG + chr3.4:66497315-66497334 MS.gene05010:CDS 45.0%
TGTTCCATGTTCACAGTCCT+AGG - chr3.4:66497322-66497341 None:intergenic 45.0%
TTAGAAGCTTGTGAGGCCAA+TGG + chr3.4:66497259-66497278 MS.gene05010:CDS 45.0%
TTGAACGGGTCCAATACCAT+CGG - chr3.4:66497365-66497384 None:intergenic 45.0%
TTGGCAACATGAACTTCCTC+TGG - chr3.4:66499357-66499376 None:intergenic 45.0%
! ACTGCATTGGTGCATCCTTA+TGG + chr3.4:66499037-66499056 MS.gene05010:CDS 45.0%
! ATTTTCATAGACCTCAGGGG+AGG - chr3.4:66497528-66497547 None:intergenic 45.0%
! CTGCATTGGTGCATCCTTAT+GGG + chr3.4:66499038-66499057 MS.gene05010:CDS 45.0%
! GAAGCACTAGTCTCCTTGTA+TGG - chr3.4:66499276-66499295 None:intergenic 45.0%
! GGCGACTGCAATTTTCTCTT+TGG + chr3.4:66498281-66498300 MS.gene05010:intron 45.0%
! GGCTGGTAAACTGTTTTCGA+TGG - chr3.4:66497062-66497081 None:intergenic 45.0%
!!! TCTTGCTAGTTTTCTGGCGA+TGG - chr3.4:66496966-66496985 None:intergenic 45.0%
!! TAAAAATAAAAAATATTAGT+TGG - chr3.4:66498651-66498670 None:intergenic 5.0%
AAGCCAGAGTTGGATGCTCT+TGG + chr3.4:66498991-66499010 MS.gene05010:CDS 50.0%
ACCTCACATGTAGACTCGTC+GGG - chr3.4:66497156-66497175 None:intergenic 50.0%
AGCTTCTTGAGGGAGCTTGT+TGG - chr3.4:66499376-66499395 None:intergenic 50.0%
AGGAAGCCGCTCCAAATCAA+AGG + chr3.4:66497024-66497043 MS.gene05010:CDS 50.0%
ATCATCGTTTGCCACGCTGT+TGG - chr3.4:66498343-66498362 None:intergenic 50.0%
CACATGCTTCTTCTTCCTCG+CGG - chr3.4:66497191-66497210 None:intergenic 50.0%
CACCTCACATGTAGACTCGT+CGG - chr3.4:66497157-66497176 None:intergenic 50.0%
CCGTAGATTGTTACACTGGC+TGG - chr3.4:66497079-66497098 None:intergenic 50.0%
CTTGTAGCCCTTTGCCCATA+AGG - chr3.4:66499055-66499074 None:intergenic 50.0%
GACGAGTCTACATGTGAGGT+GGG + chr3.4:66497156-66497175 MS.gene05010:CDS 50.0%
GGCCAATGGTGTGCAGTTTA+TGG + chr3.4:66497273-66497292 MS.gene05010:CDS 50.0%
GGTGCATCCTTATGGGCAAA+GGG + chr3.4:66499045-66499064 MS.gene05010:CDS 50.0%
TAGCTATGACGAGGTTGTGG+AGG + chr3.4:66497099-66497118 MS.gene05010:CDS 50.0%
TCATCGTTTGCCACGCTGTT+GGG - chr3.4:66498342-66498361 None:intergenic 50.0%
TCATTGAGGTCTAGCGCAAG+TGG + chr3.4:66498759-66498778 MS.gene05010:intron 50.0%
TGGTGCATCCTTATGGGCAA+AGG + chr3.4:66499044-66499063 MS.gene05010:CDS 50.0%
! GAAGAAGAAGCATGTGCTGG+TGG + chr3.4:66497195-66497214 MS.gene05010:CDS 50.0%
! GAGGAAGAAGAAGCATGTGC+TGG + chr3.4:66497192-66497211 MS.gene05010:CDS 50.0%
! TGATTTGGAGCGGCTTCCTA+TGG - chr3.4:66497023-66497042 None:intergenic 50.0%
!!! TGCTAGTTTTCTGGCGATGG+TGG - chr3.4:66496963-66496982 None:intergenic 50.0%
AAACTAGACCCCCAACAGCG+TGG + chr3.4:66498329-66498348 MS.gene05010:intron 55.0%
ACAGTGCGTTTCGGCATCCT+AGG + chr3.4:66496932-66496951 MS.gene05010:CDS 55.0%
ACATGTAGACTCGTCGGGAG+AGG - chr3.4:66497151-66497170 None:intergenic 55.0%
ATCGTTTGCCACGCTGTTGG+GGG - chr3.4:66498340-66498359 None:intergenic 55.0%
CATCGTTTGCCACGCTGTTG+GGG - chr3.4:66498341-66498360 None:intergenic 55.0%
CGACGAGTCTACATGTGAGG+TGG + chr3.4:66497155-66497174 MS.gene05010:CDS 55.0%
CGGTAGCTATGACGAGGTTG+TGG + chr3.4:66497096-66497115 MS.gene05010:CDS 55.0%
GACGAGGTTGTGGAGGATTC+AGG + chr3.4:66497106-66497125 MS.gene05010:CDS 55.0%
GAGTCTACATGTGAGGTGGG+CGG + chr3.4:66497159-66497178 MS.gene05010:CDS 55.0%
GGTTGTGGAGGATTCAGGTG+TGG + chr3.4:66497111-66497130 MS.gene05010:CDS 55.0%
TCCCGACGAGTCTACATGTG+AGG + chr3.4:66497152-66497171 MS.gene05010:CDS 55.0%
TCCCGACGTCACACGAAATG+CGG + chr3.4:66499098-66499117 MS.gene05010:CDS 55.0%
TGGGTGGAATGTGAGACCAG+AGG + chr3.4:66499338-66499357 MS.gene05010:CDS 55.0%
! GGCGTTGGGAGTGAGAGTAA+TGG - chr3.4:66496990-66497009 None:intergenic 55.0%
! GTGCCCTTGGTGACTTAGCA+TGG + chr3.4:66499013-66499032 MS.gene05010:CDS 55.0%
! TTTGGAGCGGCTTCCTATGG+CGG - chr3.4:66497020-66497039 None:intergenic 55.0%
!! GCACCAAGAGCATCCAACTC+TGG - chr3.4:66498997-66499016 None:intergenic 55.0%
!! TTGGATGCTCTTGGTGCCCT+TGG + chr3.4:66499000-66499019 MS.gene05010:CDS 55.0%
AACGCCACCATCTCCGCCAT+AGG + chr3.4:66497004-66497023 MS.gene05010:CDS 60.0%
GACGTCACACGAAATGCGGC+CGG + chr3.4:66499102-66499121 MS.gene05010:CDS 60.0%
GCCGCATTTCGTGTGACGTC+GGG - chr3.4:66499102-66499121 None:intergenic 60.0%
GGCCGCATTTCGTGTGACGT+CGG - chr3.4:66499103-66499122 None:intergenic 60.0%
! ATGGCGGAGATGGTGGCGTT+GGG - chr3.4:66497004-66497023 None:intergenic 60.0%
! GCATGTGCTGGTGGAGAAGC+CGG + chr3.4:66497204-66497223 MS.gene05010:CDS 60.0%
! GCTTCCTATGGCGGAGATGG+TGG - chr3.4:66497011-66497030 None:intergenic 60.0%
! TATGGCGGAGATGGTGGCGT+TGG - chr3.4:66497005-66497024 None:intergenic 60.0%
GAAGCCGGCGGCACTTGATG+TGG + chr3.4:66497219-66497238 MS.gene05010:CDS 65.0%
TCGTGTGACGTCGGGAAGCG+CGG - chr3.4:66499094-66499113 None:intergenic 65.0%
! GCGGCTTCCTATGGCGGAGA+TGG - chr3.4:66497014-66497033 None:intergenic 65.0%
! TCCGCCACATCAAGTGCCGC+CGG - chr3.4:66497226-66497245 None:intergenic 65.0%
! TGTGCTGGTGGAGAAGCCGG+CGG + chr3.4:66497207-66497226 MS.gene05010:CDS 65.0%
GCCGGCGGCACTTGATGTGG+CGG + chr3.4:66497222-66497241 MS.gene05010:CDS 70.0%
! GACGTCGGGAAGCGCGGTGA+CGG - chr3.4:66499088-66499107 None:intergenic 70.0%
! GGAAGCGCGGTGACGGTGGT+TGG - chr3.4:66499081-66499100 None:intergenic 70.0%
! TGGCGATGGTGGCGCAGCCT+AGG - chr3.4:66496952-66496971 None:intergenic 70.0%
! GTCGGGAAGCGCGGTGACGG+TGG - chr3.4:66499085-66499104 None:intergenic 75.0%
! GGTGGGCGGTTGCTGCCGCG+AGG + chr3.4:66497173-66497192 MS.gene05010:CDS 80.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 66496917 66499551 66496917 ID=MS.gene05010
chr3.4 mRNA 66496917 66499551 66496917 ID=MS.gene05010.t1;Parent=MS.gene05010
chr3.4 exon 66496917 66497387 66496917 ID=MS.gene05010.t1.exon1;Parent=MS.gene05010.t1
chr3.4 CDS 66496917 66497387 66496917 ID=cds.MS.gene05010.t1;Parent=MS.gene05010.t1
chr3.4 exon 66498931 66499551 66498931 ID=MS.gene05010.t1.exon2;Parent=MS.gene05010.t1
chr3.4 CDS 66498931 66499551 66498931 ID=cds.MS.gene05010.t1;Parent=MS.gene05010.t1
Gene Sequence

>MS.gene05010

ATGACTGAGAAAGATACAGTGCGTTTCGGCATCCTAGGCTGCGCCACCATCGCCAGAAAACTAGCAAGAGCCATTACTCTCACTCCCAACGCCACCATCTCCGCCATAGGAAGCCGCTCCAAATCAAAGGCATCAAAATTTGCCATCGAAAACAGTTTACCAGCCAGTGTAACAATCTACGGTAGCTATGACGAGGTTGTGGAGGATTCAGGTGTGGATGCAGTGTACATTCCTCTCCCGACGAGTCTACATGTGAGGTGGGCGGTTGCTGCCGCGAGGAAGAAGAAGCATGTGCTGGTGGAGAAGCCGGCGGCACTTGATGTGGCGGAGCTTGATTTGATCTTAGAAGCTTGTGAGGCCAATGGTGTGCAGTTTATGGATGGGACTATGTGGTTGCATCATCCTAGGACTGTGAACATGGAACACTTGATTGATCTTTCTAATTCCGATGGTATTGGACCCGTTCAATTTGTAAGTGGACCCCTATTTCATTATATCTTATATATTTTTCAAAGAAAAAACTCTAAATTTGTTTATAAGGACTATTTCATTTTTACCAGTATACTACAAGTATTTAGGTAAATTTGGAATAGGGAAAATTACATTCACCTCCCCTGAGGTCTATGAAAATGACACTAACACCCCCTCTAGTTTTAAAACTTACACTAACCTCCCTTAAGTTTTTGTTAAATAGACAAACACCTCCTTTGCTATCAACACTGTTAATTTCTTCTATTAACTCAATTTTTTTTTAGTATATTCAATTAACCTTTAATGGAGGAAAACCTCCATTGTTGAACTTAAATCAATTTAAGAAACAAAATTCAAATATGAGTATATCAATCATTCAAGAAAGCTATTCCAAACATTCAAGAAACCATAGGTTATGGCTTTTTAATTTCACATTGATTCCCCATTTCATTCTCACTTTTCCTCTCCTCCTTAATTTAATTATATATGTTGCACTCATATTATGGATTATATGATTATGCTCACTCTGATATAATCATCAATTTAATTTGTCATTAATCCTTTCTTTAAACCGTCAATTCCATTTCATTGATCTTTCAAAAAAAAAAAAACAATCCATTTCATTGATGCTTACTCTCGTAATTGAAATTATCTTTCATTAGCTTAATAAAATCAGAATTTCATTGTCCTTAGAAATCAATTTAGTAGCACAATGGTGGTGAAAGCATACAAACAAGAACACATTTGTAAACATCTATGAAAAGAAAACGGAAAAAGTAACAGAGTTAATAGCAAGGGAGCTATTTGTATATTTGAGGAAAACTTAAGGGAGGTTATTGCAAGTTTTAAAATTAAAGGGGGGTGTTAGTGTCACTTACATAAAGTTCAAGGGAGGCGACTGCAATTTTCTCTTTGGAATATGGATCGGGTCTAGCATAAAAAAACTAGACCCCCAACAGCGTGGCAAACGATGATTCGAATCCTAACAACGGATTAAAGGAGTTAATAGTTAAATGTACAATGTTTAAATTTTGACAAAGGAAAAAAATACTAACATAACAATTAACATACTAACAATTTAAATCTTGGTAGGAAGAGATATTCATGTTCAATATCCATCATGTCTCGAATAAGATTACATCAAGTGAAAGAGATTAGGGGAAACAAAAAAAAAATCAGTTTGGTGGTTTGGGGGAATAACATAAGAGTTGGAGTGATAAGATATCATAAGTTAAATTAACTATTCGACTAACAAAAATACCAACTAATATTTTTTATTTTTAAAAATATTATTGAACTAAAAAAATATTTAGGAAATTTGGATATAAAATTGAGGACATAGTGTAAAAAATAATTTATAGCTAACAACTATCATTGAGGTCTAGCGCAAGTGGTTGATGCGTTGTATGAGTGTCATAAATTTTGAACTATCGAGTTTGATTCTACGCATAAAAAAAGTAATTTATACTTTAATATTAATTTTTGTGTTAGATTTCCTTTATAATGTATAAACATTTTCTTTGCATAACGTTGTGTATTGAAGATCCATAGCACATCAACAATGCCAACAACTCAAGAATTCTTGGAGAATAACATTAGAGTAAAGCCAGAGTTGGATGCTCTTGGTGCCCTTGGTGACTTAGCATGGTACTGCATTGGTGCATCCTTATGGGCAAAGGGCTACAAGCTACCAACCACCGTCACCGCGCTTCCCGACGTCACACGAAATGCGGCCGGAGTCATATTATCAATCACATCTTCTTTGCAATGGGACCAACCAAATCAAACAGTTGCAAATATTCACTGCTCATTTCTTTCTCACACGTCCATGGACTTATCTATAAGTGGTTCCAATGGGTCTATGCATCTTAAGGACTTCATAATCCCATACAAGGAGACTAGTGCTTCATTTGACTTCACATTTGGTGCAAAATTTGTTGATCTTCACATTGGGTGGAATGTGAGACCAGAGGAAGTTCATGTTGCCAACAAGCTCCCTCAAGAAGCTTTGATGATACAAGAGTTTGCTAGGCTTGTTGCAAGTATTAGAGATTATGGGTCTCAGCCTTCTACAAAATGGCCAGAAATTAGTAGAAAGACTCAACTGGTAGTTGATGCTGTGAAAAAGTCTTTAGAGCTTGGCTGCAAACCTGTTTCCTTATAG

Protein sequence

>MS.gene05010.t1

MTEKDTVRFGILGCATIARKLARAITLTPNATISAIGSRSKSKASKFAIENSLPASVTIYGSYDEVVEDSGVDAVYIPLPTSLHVRWAVAAARKKKHVLVEKPAALDVAELDLILEACEANGVQFMDGTMWLHHPRTVNMEHLIDLSNSDGIGPVQFIHSTSTMPTTQEFLENNIRVKPELDALGALGDLAWYCIGASLWAKGYKLPTTVTALPDVTRNAAGVILSITSSLQWDQPNQTVANIHCSFLSHTSMDLSISGSNGSMHLKDFIIPYKETSASFDFTFGAKFVDLHIGWNVRPEEVHVANKLPQEALMIQEFARLVASIRDYGSQPSTKWPEISRKTQLVVDAVKKSLELGCKPVSL