AlfalfaGEDB | MS.gene91511

M. sativa cultivar XinJiangDaYe / MS.gene91511

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0016787 GO:0019538 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564
PFAM: PF14541.9 PF14543.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91511.t1	XP_013464878.1	97.3	482	12	1	1	482	1	481	4.80E-262	913.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91511.t1	Q9S9K4	39.8	415	228	9	40	449	40	437	6.9e-76	286.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91511.t1	A0A072VBY9	97.3	482	12	1	1	482	1	481	3.5e-262	913.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050414	MS.gene91511	0.826897	2.11E-54	-1.69E-46
MS.gene050646	MS.gene91511	0.826381	2.80E-54	-1.69E-46
MS.gene051279	MS.gene91511	0.808871	2.50E-50	-1.69E-46
MS.gene052016	MS.gene91511	0.805933	1.05E-49	-1.69E-46
MS.gene052037	MS.gene91511	0.811086	8.35E-51	-1.69E-46
MS.gene052118	MS.gene91511	0.828762	7.51E-55	-1.69E-46
MS.gene052463	MS.gene91511	0.804716	1.89E-49	-1.69E-46
MS.gene052609	MS.gene91511	0.804253	2.36E-49	-1.69E-46
MS.gene053620	MS.gene91511	0.804804	1.81E-49	-1.69E-46
MS.gene054892	MS.gene91511	0.81075	9.87E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91511.t1	MTR_2g084550	97.303	482	12	1	1	482	1	481	0.0	944
MS.gene91511.t1	MTR_4g056420	75.267	469	111	2	6	470	1	468	0.0	731
MS.gene91511.t1	MTR_7g102750	63.011	465	169	3	4	466	5	468	0.0	612
MS.gene91511.t1	MTR_1g061940	60.917	458	171	5	5	458	9	462	0.0	569
MS.gene91511.t1	MTR_7g102750	63.350	412	148	3	4	413	5	415	0.0	543
MS.gene91511.t1	MTR_1g078240	41.228	456	245	8	18	467	19	457	5.48e-111	337
MS.gene91511.t1	MTR_1g078240	41.228	456	246	8	18	467	19	458	8.60e-111	337
MS.gene91511.t1	MTR_7g080230	39.462	446	249	9	8	445	5	437	3.15e-104	320
MS.gene91511.t1	MTR_7g021510	37.634	465	265	9	19	473	18	467	6.01e-100	308
MS.gene91511.t1	MTR_1g078240	41.067	375	208	5	18	391	19	381	3.13e-92	285

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91511.t1	AT5G22850	72.786	463	122	2	1	460	1	462	0.0	689
MS.gene91511.t1	AT1G08210	62.151	465	173	3	2	466	55	516	0.0	564
MS.gene91511.t1	AT1G08210	62.151	465	173	3	2	466	41	502	0.0	563
MS.gene91511.t1	AT1G08210	62.151	465	173	3	2	466	7	468	0.0	563
MS.gene91511.t1	AT2G36670	58.455	479	187	5	11	484	27	498	0.0	560
MS.gene91511.t1	AT2G36670	57.851	484	187	6	11	484	27	503	0.0	555
MS.gene91511.t1	AT1G08210	58.740	492	173	4	2	466	7	495	0.0	548
MS.gene91511.t1	AT2G36670	60.688	407	153	4	78	484	33	432	7.23e-176	501
MS.gene91511.t1	AT2G36670	60.688	407	153	4	78	484	33	432	7.23e-176	501
MS.gene91511.t1	AT3G02740	39.062	448	245	9	5	439	8	440	1.15e-105	323

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Find 109 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCACCGCATTGACAAA+GGG	0.548435	2.1:-16908540	None:intergenic
AAATCTGACAGAGCAGTTGA+TGG	0.478478	2.1:+16908003	MS.gene91511:CDS
AACGGTTGTCCACAGACAAG+TGG	0.572605	2.1:+16907467	MS.gene91511:CDS
AATACCACAATCTGTACGTA+CGG	0.559219	2.1:+16908737	MS.gene91511:CDS
AATGTTTCTTAATTACCGAC+AGG	0.509619	2.1:+16908778	MS.gene91511:CDS
ACAACCGTACGTACAGATTG+TGG	0.610972	2.1:-16908741	None:intergenic
ACACTGGAAGTGATGTTCTC+TGG	0.404650	2.1:+16907426	MS.gene91511:CDS
ACCTGCAACCCACTTGTCTG+TGG	0.577779	2.1:-16907476	None:intergenic
ACCTTTGATCCATTTCAAGT+CGG	0.554751	2.1:+16906638	MS.gene91511:CDS
ACGGTTGTCCACAGACAAGT+GGG	0.671786	2.1:+16907468	MS.gene91511:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTAAACAGATAGATTGCA+AGG	-	chr2.1:16909335-16909354	None:intergenic	30.0%
AATGTTTCTTAATTACCGAC+AGG	+	chr2.1:16908778-16908797	MS.gene91511:CDS	30.0%
AGGCCTGAAATATTTGAAAA+TGG	-	chr2.1:16908376-16908395	None:intergenic	30.0%
AGTGGAAATAGAACATACAT+AGG	-	chr2.1:16910459-16910478	None:intergenic	30.0%
AGTGGAGTATAAACTATGTT+AGG	-	chr2.1:16908168-16908187	None:intergenic	30.0%
ATAAAAACATCCTAACCTGT+CGG	-	chr2.1:16908796-16908815	None:intergenic	30.0%
CAATTATCACAGATATACAG+TGG	-	chr2.1:16910477-16910496	None:intergenic	30.0%
CACTGTATATCTGTGATAAT+TGG	+	chr2.1:16910475-16910494	MS.gene91511:intron	30.0%
CGAATCATTTATTAAGGCAT+AGG	+	chr2.1:16909230-16909249	MS.gene91511:intron	30.0%
GATTAAACCAATAAACACGA+AGG	-	chr2.1:16907917-16907936	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	16906431	16910555	16906431	ID=MS.gene91511
chr2.1	mRNA	16906431	16910555	16906431	ID=MS.gene91511.t1;Parent=MS.gene91511
chr2.1	exon	16906431	16906660	16906431	ID=MS.gene91511.t1.exon1;Parent=MS.gene91511.t1
chr2.1	CDS	16906431	16906660	16906431	ID=cds.MS.gene91511.t1;Parent=MS.gene91511.t1
chr2.1	exon	16907367	16907496	16907367	ID=MS.gene91511.t1.exon2;Parent=MS.gene91511.t1
chr2.1	CDS	16907367	16907496	16907367	ID=cds.MS.gene91511.t1;Parent=MS.gene91511.t1
chr2.1	exon	16907610	16907860	16907610	ID=MS.gene91511.t1.exon3;Parent=MS.gene91511.t1
chr2.1	CDS	16907610	16907860	16907610	ID=cds.MS.gene91511.t1;Parent=MS.gene91511.t1
chr2.1	exon	16907972	16908199	16907972	ID=MS.gene91511.t1.exon4;Parent=MS.gene91511.t1
chr2.1	CDS	16907972	16908199	16907972	ID=cds.MS.gene91511.t1;Parent=MS.gene91511.t1
chr2.1	exon	16908392	16908554	16908392	ID=MS.gene91511.t1.exon5;Parent=MS.gene91511.t1
chr2.1	CDS	16908392	16908554	16908392	ID=cds.MS.gene91511.t1;Parent=MS.gene91511.t1
chr2.1	exon	16908726	16908799	16908726	ID=MS.gene91511.t1.exon6;Parent=MS.gene91511.t1
chr2.1	CDS	16908726	16908799	16908726	ID=cds.MS.gene91511.t1;Parent=MS.gene91511.t1
chr2.1	exon	16908905	16909001	16908905	ID=MS.gene91511.t1.exon7;Parent=MS.gene91511.t1
chr2.1	CDS	16908905	16909001	16908905	ID=cds.MS.gene91511.t1;Parent=MS.gene91511.t1
chr2.1	exon	16909622	16909688	16909622	ID=MS.gene91511.t1.exon8;Parent=MS.gene91511.t1
chr2.1	CDS	16909622	16909688	16909622	ID=cds.MS.gene91511.t1;Parent=MS.gene91511.t1
chr2.1	exon	16910051	16910122	16910051	ID=MS.gene91511.t1.exon9;Parent=MS.gene91511.t1
chr2.1	CDS	16910051	16910122	16910051	ID=cds.MS.gene91511.t1;Parent=MS.gene91511.t1
chr2.1	exon	16910246	16910379	16910246	ID=MS.gene91511.t1.exon10;Parent=MS.gene91511.t1
chr2.1	CDS	16910246	16910379	16910246	ID=cds.MS.gene91511.t1;Parent=MS.gene91511.t1
chr2.1	exon	16910541	16910555	16910541	ID=MS.gene91511.t1.exon11;Parent=MS.gene91511.t1
chr2.1	CDS	16910541	16910555	16910541	ID=cds.MS.gene91511.t1;Parent=MS.gene91511.t1

Gene Sequence

>MS.gene91511

ATGGCGGTTGTTTTTATATTCACCGCCATATTGTTAACGGCGGCGACGGTGATTGTTTCTGGATCTCCGGCGACTCTAACGTTGGAAAGAGCTTTTCCGACGAATCATGGAATTGAGCTGAATCAGCTCAAAGCTAGAGACTTGTTAAGGCATGGTAGATTCTTGCAGTCTTCTTCAAATGGTGTTGTTGATTTCGCTGTTCATGGTACCTTTGATCCATTTCAAGTCGGGTAATTCAATCGAATTTCACTTTTTTTGATAAAGGGTTGGTTTTACTTTTCATGTTTTTGGTTTCGTGTGTTTGAATCAAGTTGAATGCTTTTTGGATTTCATTTTTAGTGGATTTTGAGTAATGGGTTTCTTAATTTGTTTAGAATCTTATCTATAATTCTTCAATTTATGGCAATATCATGTTGATGTTTTTTTTCTTTCTTTTTTGATCAGTTTAGAGTGTTCTTTTATTCATGTTTCTCTATTTGTTTAGTCATTAAAAGTTTACAACAAAGATTGCTTGATTTAGTTTAGTTTAGTTTAGTTCTCTATGGCTAGAGAATTTCAATTTTGTTTTCTATTTTTGGAAACTTGAAGATAGTTTCTTTAAGTGATGATAGGCCAATATATGGTTTCTATAAGTGATTCTAAATTGCTTTCATGATTTCGTTCAAGTTTGTTTTTCTGCATCAACACTTCAGATTGAAGGTGTGTCGGTGTCTGACACGAGACACTTCAGTTTCTTAGCACCAACACTTCTAAATTGCTTTCTTAATTTCCTTCAAGTTAGTTTTGCTTACATTCAAATTTCAATCATTCGATTTGCGTAAGTGTCGTGTTGGGTGTCCATCTTAGTGCAGCTTATCTTTTCCTCTTTGCATTATATCTTATCTTTTTGTGTGTGCGTGCGCGTGTGTTTGATTTAAAATTGATGGACTATTGCAGGCTCTATTTTACAAAGGTGCAGTTAGGTACTCCTCCAGTTGAATTTTATGTGCAAATTGACACTGGAAGTGATGTTCTCTGGGTCAGTTGTAGCTCTTGCAACGGTTGTCCACAGACAAGTGGGTTGCAGGTAAATTCAATTTTCTCTATTTGTTGATTATGTATCATGTTTGCAGAACAGTGAACAATGTAGAGATGGAATATGTCAATATAATGGTTTACTGTTTATGGATTATGTCACAGATTGAGCTCAATTTTTTCGACCCTAGGAGTTCATCAACATCCTCGTTAATCTCTTGTTCTGACAAAAGGTGCAACAGTGGAATACAATCATCAGACGCAACCTGTTCCAGTCAGACCAACCAGTGCTCTTACACTTTCCAGTATGGAGATGGTAGCGGAACCTCAGGCTATTACGTGTCTGATACAATGCATTTGGATACTATTTTTGAGGGATCCGTGTCTACAAATTCTTCAGCTCCTGTAGTTTTTGGGTGAGCTTTCATGAGCATGAAATGGTTGATATTTGATAGTGTTTCTTTTTTTTCCTTCGTGTTTATTGGTTTAATCTAATCTCGGAAACCGTTACTTTGTGAATCGAGCAGTTGTAGTAACCAGCAGAGTGGAGACTTGACAAAATCTGACAGAGCAGTTGATGGTATATTTGGATTTGGGCAACAGCAAATGTCTGTGATCTCACAGCTCTCATCACAAGGGATTGCTTCTGGAGTATTCTCTCATTGTCTTAGAGGAGATAGCTCTGGTGGAGGAATTCTGGTTCTTGGTGAGATTGTGGAGCCTAACATAGTTTATACTCCACTTGTTCCATCACAGTAAGCCCTTGAAAATAAAATTGCTATTAATTAAACCTTCTTTTCGTTAACTTAAGTATCCATGATGAGAGCAATCTCAATTCTTTATTAAAAGTAGCTAGCAATCAGAGATCTGTGTGTTTGTTCTTAGGACCACGAGCATAATCAAATGTTAAGTTTTTAGCTAACTGAACCCATTTTCAAATATTTCAGGCCTCATTACAACTTAAACCTACAGAGCATATCTGTCAACGGCCAGGCACTTCAAGTCGATCCATCAGTTTTTGCAACATCAAGCAACAGAGGCACCATTGTTGATTCTGGAACAACTTTAGCATACCTTGCAGAAGAGGCTTATGATCCCTTTGTCAATGCGGTGAGTTTCTTTTGGGTAATTTCAAGCTTATTCAATTTATCATTAACATTATGTTGCTTTAGGCTTTAATGCTTTAATGCTTTATGCATTACTTAGCAATCATGTCATGTTTTTGGCTTGGTTGGAGATTTATCAAACATTGATGGTAAAATGATTTTTCAACTACTGCAGATTACAGCTACAATACCACAATCTGTACGTACGGTTGTTTCCAGGGGAAATCAATGTTTCTTAATTACCGACAGGTTAGGATGTTTTTATTTCCATTTGTACATTTTTTACGATTATGTGGTATAAATAGATCATCTTGATGCTCTTTTTTCTAACTCCTTTCGTATTATTGTGTTTAGTGTCACTAACATATTTCCTCAAGTAAGTCTGAACTTTGCTGGTGGTGCATCTATGGTTTTAAGACCACAGGACTACCTTATACAACAGAATTCTATTGTACGTATTCAAGCTTCAATTTTTTCTTTTTCATTTTTCTGAGGATTGGTTTGGATTTTGTCATTTCCAAAGATAATACTTTTAAGTTAGAGTGAGTTGCAGTTGGCAGTTATAGAAGTGTCGCTGTCTAATGAAATCCATTAATCTGATTTTGATTTTACTTTGCTTCTAAAGATGCCTAATGTGCCTTTCTTTACGACATTTTACATGATGGCTTATTGTATTGAACGAATCATTTATTAAGGCATAGGATACTGCCGAAATTATTCTCAAGTACTACAAACTCAATTTGCAATTCTAATATATTTGGTTTAAAATTTCCTTTATTATCCTTGCAATCTATCTGTTTAGTTGAGTGCATTAGCAGGATACAAACAAAGAAAGACAATTTTTCTTGTAATTAACATTACATGTCATTTTCCATCTGAAATCTATTACTTTTTAGTGTAGAGAAAGGTTTAAGACGTGTCTTAGATATTTACACCAAATTCTTAGATATTGTTGATTCCTTTGATTACATGCATTTATTTTTCATATTCAGCTTATGCTTCACTTTGTTTGGTTTTTATATGCCGTATGTTTTCTCACTAAATGCTACGGTGAACCTATGCATGTTACAGGGTGGTGCAGCAGTGTGGTGTATTGGCTTTCAGAAAAGCCAGGGTCAAGGAGTAACAATTCTAGGAGGTATAATACCACTTTGAACTCAAAAATTTAGATCATGAACCAATATTTAGAAGGAAATGTTTATATTGATTATATCTTACTTTATTCCACGTATAAACTTTTAGTATGAAATTATTACCTCCTCCTGTTTTACCTTCTTGCCCCGCCTTCGGCCAAAAAATGATCACCATTACTATTGGGATTTAAAATTAGTATGATTTACAATTATCCCATTAAAAACAATGATATACACTTAAAAGTATCATTCATGTACTTAAATTATTGTTCATAAATAATCTGTTAGGGATATTTTTTTTCCTTCAAGAGTGTTATACAACTATTACTAACAACATCACTTCTTTGACTTCTTTGTGTTTTGGCAGATCTCGTATTAAAAGACAAAATTGTTGTTTACGATCTGGTCGGTCAACGCATTGGATGGGCTAACTATGACTGTAAGTTTCAGCTACACTACCAGAAAGACATATAGTGAATTTCATATGGAAAGATTTATCTTTTTTATTATCCTTGACATTGCATTAGATTCTAATCATGCTGTTTTTAATTAAACAATGCAGGTTCTTTGACAGTTAATGTTTCTGCATCAACTGGCACTGGCAGAAGTGAATACGTGAATGCTGGAGAGATAGGTGGAAGCAATTCTTTACATGATGGACTTGCGTCGTCAAAGACAGGGTTTATAGCACTCTTTGTAACACTGATTTGCAGCTTTGGTTTTTTATAGTATCTATATATGCATTGTGAGAGATAGATCTAATATTCTTTCTCCTATGTATGTTCTATTTCCACTGTATATCTGTGATAATTGGAGATACCACATGTTATTTTCAATATTGATTGTGTGCACAATAGGGTTTTCAGGTTTAG

Protein sequence

>MS.gene91511.t1

MAVVFIFTAILLTAATVIVSGSPATLTLERAFPTNHGIELNQLKARDLLRHGRFLQSSSNGVVDFAVHGTFDPFQVGLYFTKVQLGTPPVEFYVQIDTGSDVLWVSCSSCNGCPQTSGLQIELNFFDPRSSSTSSLISCSDKRCNSGIQSSDATCSSQTNQCSYTFQYGDGSGTSGYYVSDTMHLDTIFEGSVSTNSSAPVVFGCSNQQSGDLTKSDRAVDGIFGFGQQQMSVISQLSSQGIASGVFSHCLRGDSSGGGILVLGEIVEPNIVYTPLVPSQPHYNLNLQSISVNGQALQVDPSVFATSSNRGTIVDSGTTLAYLAEEAYDPFVNAITATIPQSVRTVVSRGNQCFLITDSVTNIFPQVSLNFAGGASMVLRPQDYLIQQNSIGGAAVWCIGFQKSQGQGVTILGDLVLKDKIVVYDLVGQRIGWANYDCSLTVNVSASTGTGRSEYVNAGEIGGSNSLHDGLASSKTGFIALFGFQV