Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92342.t1 | XP_003610648.1 | 82.5 | 573 | 78 | 2 | 1 | 564 | 1 | 560 | 1.60E-155 | 559.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92342.t1 | G7K0Z8 | 82.5 | 573 | 78 | 2 | 1 | 564 | 1 | 560 | 1.1e-155 | 559.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene92342 | 0.814328 | 1.63E-51 | -1.69E-46 |
| MS.gene049350 | MS.gene92342 | 0.82109 | 4.86E-53 | -1.69E-46 |
| MS.gene049807 | MS.gene92342 | 0.823057 | 1.70E-53 | -1.69E-46 |
| MS.gene049887 | MS.gene92342 | 0.807982 | 3.87E-50 | -1.69E-46 |
| MS.gene051700 | MS.gene92342 | 0.810006 | 1.43E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene92342 | 0.80336 | 3.62E-49 | -1.69E-46 |
| MS.gene051720 | MS.gene92342 | 0.824532 | 7.67E-54 | -1.69E-46 |
| MS.gene052463 | MS.gene92342 | 0.800433 | 1.44E-48 | -1.69E-46 |
| MS.gene053122 | MS.gene92342 | 0.811938 | 5.45E-51 | -1.69E-46 |
| MS.gene053144 | MS.gene92342 | 0.821324 | 4.29E-53 | -1.69E-46 |
| MS.gene053536 | MS.gene92342 | 0.808271 | 3.36E-50 | -1.69E-46 |
| MS.gene053538 | MS.gene92342 | 0.809054 | 2.29E-50 | -1.69E-46 |
| MS.gene054584 | MS.gene92342 | 0.811609 | 6.43E-51 | -1.69E-46 |
| MS.gene055465 | MS.gene92342 | 0.811061 | 8.45E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene92342 | 0.802778 | 4.77E-49 | -1.69E-46 |
| MS.gene055468 | MS.gene92342 | 0.814303 | 1.65E-51 | -1.69E-46 |
| MS.gene055513 | MS.gene92342 | 0.808821 | 2.56E-50 | -1.69E-46 |
| MS.gene055537 | MS.gene92342 | 0.823847 | 1.11E-53 | -1.69E-46 |
| MS.gene055580 | MS.gene92342 | -0.829599 | 4.70E-55 | -1.69E-46 |
| MS.gene056043 | MS.gene92342 | -0.824549 | 7.60E-54 | -1.69E-46 |
| MS.gene057166 | MS.gene92342 | 0.812249 | 4.66E-51 | -1.69E-46 |
| MS.gene058492 | MS.gene92342 | 0.806845 | 6.75E-50 | -1.69E-46 |
| MS.gene059625 | MS.gene92342 | 0.80383 | 2.89E-49 | -1.69E-46 |
| MS.gene061100 | MS.gene92342 | 0.815858 | 7.45E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92342.t1 | MTR_5g005430 | 90.603 | 564 | 49 | 1 | 1 | 564 | 1 | 560 | 0.0 | 892 |
| MS.gene92342.t1 | MTR_1g105890 | 43.361 | 595 | 252 | 21 | 1 | 562 | 1 | 543 | 2.53e-90 | 288 |
| MS.gene92342.t1 | MTR_4g097790 | 46.667 | 75 | 32 | 2 | 1 | 74 | 1 | 68 | 2.10e-16 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92342.t1 | AT4G33740 | 56.322 | 87 | 35 | 2 | 2 | 85 | 1 | 87 | 4.17e-22 | 100 |
| MS.gene92342.t1 | AT4G33740 | 56.322 | 87 | 35 | 2 | 2 | 85 | 1 | 87 | 4.17e-22 | 100 |
| MS.gene92342.t1 | AT4G33740 | 56.322 | 87 | 35 | 2 | 2 | 85 | 1 | 87 | 4.17e-22 | 100 |
| MS.gene92342.t1 | AT4G33740 | 56.322 | 87 | 35 | 2 | 2 | 85 | 1 | 87 | 4.17e-22 | 100 |
| MS.gene92342.t1 | AT4G33740 | 56.322 | 87 | 35 | 2 | 2 | 85 | 1 | 87 | 4.17e-22 | 100 |
| MS.gene92342.t1 | AT2G22795 | 46.988 | 83 | 41 | 1 | 1 | 83 | 1 | 80 | 2.53e-17 | 86.3 |
| MS.gene92342.t1 | AT4G37820 | 52.113 | 71 | 32 | 1 | 4 | 74 | 3 | 71 | 8.75e-17 | 84.0 |
| MS.gene92342.t1 | AT4G37820 | 52.113 | 71 | 32 | 1 | 4 | 74 | 3 | 71 | 8.75e-17 | 84.0 |
Find 114 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTCCTGACATGTTATTTC+TGG | 0.173078 | 5.1:+491575 | None:intergenic |
| AACTTCTGTAATACTAAAAT+TGG | 0.190284 | 5.1:+491764 | None:intergenic |
| TCTCCTACATTTCTATTATC+TGG | 0.238866 | 5.1:+491042 | None:intergenic |
| TGTTGGTTGGTATTTGCTTC+TGG | 0.291558 | 5.1:-492610 | MS.gene92342:CDS |
| ATACCATCTTCTGTATAATT+AGG | 0.304707 | 5.1:+491804 | None:intergenic |
| GCTTATTCCAATTCAAGTTC+TGG | 0.306628 | 5.1:-491726 | MS.gene92342:CDS |
| TTCATTACCAGAACTTGAAT+TGG | 0.326061 | 5.1:+491719 | None:intergenic |
| TCAAGTTCTGGTAATGAAAC+TGG | 0.326493 | 5.1:-491714 | MS.gene92342:CDS |
| CAGAAGTTAAACTGGTTGTT+GGG | 0.331210 | 5.1:-491749 | MS.gene92342:CDS |
| CTCTGATGTAAACGCAGAAA+TGG | 0.331678 | 5.1:-491850 | MS.gene92342:CDS |
| TTGCTTCTGGCTGATCTATC+AGG | 0.333840 | 5.1:-492597 | MS.gene92342:CDS |
| GGAAGAAAAGATCTTCTTCC+GGG | 0.341538 | 5.1:-492482 | MS.gene92342:CDS |
| GTCTCAGTTGGAGCTCAAAA+TGG | 0.360252 | 5.1:-492524 | MS.gene92342:CDS |
| ATTATACAGAAGATGGTATC+AGG | 0.366912 | 5.1:-491800 | MS.gene92342:CDS |
| ATCGTCTGAACACAATAAAA+TGG | 0.377431 | 5.1:-491547 | MS.gene92342:CDS |
| ACAAAATGAACACGAAGAAC+GGG | 0.379052 | 5.1:-492225 | MS.gene92342:CDS |
| TAGTATTACAGAAGTTAAAC+TGG | 0.396422 | 5.1:-491757 | MS.gene92342:CDS |
| GACATGTTATTTCTGGCTGC+AGG | 0.407938 | 5.1:+491582 | None:intergenic |
| TGGAAGAAAAGATCTTCTTC+CGG | 0.408303 | 5.1:-492483 | MS.gene92342:CDS |
| ATCCGAAGTTCCATTCATAA+AGG | 0.410931 | 5.1:+491149 | None:intergenic |
| ATTAGTGTTCTCATTCATAT+AGG | 0.414485 | 5.1:+491230 | None:intergenic |
| TCAAATTCATCCTTTATGAA+TGG | 0.419707 | 5.1:-491159 | MS.gene92342:CDS |
| ACAGAAGTTAAACTGGTTGT+TGG | 0.428985 | 5.1:-491750 | MS.gene92342:CDS |
| GGCTATCAGATTACAAAACT+TGG | 0.437141 | 5.1:-492503 | MS.gene92342:CDS |
| TTTAACATGGACTGCTAAGT+TGG | 0.441414 | 5.1:+491398 | None:intergenic |
| TGAAAAGCATGAAGAGGAAG+AGG | 0.447303 | 5.1:-492438 | MS.gene92342:CDS |
| GTATAATTAGGCTTGCTCTC+TGG | 0.457199 | 5.1:+491816 | None:intergenic |
| ACTTACTTGCGTGTCACCCT+TGG | 0.459293 | 5.1:+491188 | None:intergenic |
| TCAACCACCTCTGGTTTCTC+AGG | 0.459457 | 5.1:+492092 | None:intergenic |
| ACTAATGCTGCTAAATATGA+AGG | 0.459622 | 5.1:-491213 | MS.gene92342:CDS |
| AATGAGGAGTTTGTGGATGA+AGG | 0.465680 | 5.1:-492065 | MS.gene92342:CDS |
| AGAAGAGGAGGGTGATGAGA+AGG | 0.466870 | 5.1:-492033 | MS.gene92342:CDS |
| GTTTCTAAAGAAAACTTGTC+CGG | 0.467051 | 5.1:-491423 | MS.gene92342:CDS |
| AGAGAAGGAGAAGGAGAAGG+TGG | 0.474097 | 5.1:-492311 | MS.gene92342:CDS |
| TCATTGCGATCAACCACCTC+TGG | 0.481679 | 5.1:+492083 | None:intergenic |
| ATGCCAGATAATAGAAATGT+AGG | 0.485346 | 5.1:-491045 | MS.gene92342:CDS |
| AAGCCTAATTATACAGAAGA+TGG | 0.487043 | 5.1:-491807 | MS.gene92342:CDS |
| GGATGAAGGAAATCAAGGTT+TGG | 0.491585 | 5.1:-491994 | MS.gene92342:CDS |
| AACAAAATGAACACGAAGAA+CGG | 0.491765 | 5.1:-492226 | MS.gene92342:CDS |
| AGCAAGGATGAAGGAAATCA+AGG | 0.496922 | 5.1:-491999 | MS.gene92342:CDS |
| AGCAGGAACAACAGATCTAA+AGG | 0.497680 | 5.1:-492665 | MS.gene92342:CDS |
| ATGAACACGAAGAAAGAAAC+GGG | 0.497925 | 5.1:-492373 | MS.gene92342:CDS |
| ATCCTTTATGAATGGAACTT+CGG | 0.499887 | 5.1:-491151 | MS.gene92342:CDS |
| TCTGATGTAAACGCAGAAAT+GGG | 0.503166 | 5.1:-491849 | MS.gene92342:CDS |
| GCTAGTTAACCATGATAAAA+CGG | 0.503653 | 5.1:-492694 | None:intergenic |
| CTGCAGATTATGCTGTTGGT+TGG | 0.505746 | 5.1:-492623 | MS.gene92342:CDS |
| AACGAAAACAGCAAGGATGA+AGG | 0.509666 | 5.1:-492008 | MS.gene92342:CDS |
| CAACAACATTCATGAGGCTC+GGG | 0.509728 | 5.1:-491964 | MS.gene92342:CDS |
| AAAAGAGGACGATGAAAGAG+GGG | 0.511122 | 5.1:-492144 | MS.gene92342:CDS |
| CTGCAGGGACAACTATTGTA+AGG | 0.512132 | 5.1:+491598 | None:intergenic |
| TGATCGCAATGAGGAGTTTG+TGG | 0.516841 | 5.1:-492072 | MS.gene92342:CDS |
| GCAACAACATTCATGAGGCT+CGG | 0.519705 | 5.1:-491965 | MS.gene92342:CDS |
| AATGAACACGAAGAAAGAAA+CGG | 0.520665 | 5.1:-492374 | MS.gene92342:CDS |
| GGAGTTTGTGGATGAAGGGA+AGG | 0.522970 | 5.1:-492060 | MS.gene92342:CDS |
| GCAGACCGAGGGATTAGAGC+AGG | 0.525111 | 5.1:-491457 | MS.gene92342:CDS |
| GCAGCCAGAAATAACATGTC+AGG | 0.527721 | 5.1:-491579 | MS.gene92342:CDS |
| ACAGAAAATAGAGCTGCAGC+TGG | 0.529229 | 5.1:-491375 | MS.gene92342:CDS |
| TGATAAAACGGTCGTCAAGC+AGG | 0.530364 | 5.1:-492682 | MS.gene92342:CDS |
| GACGAGAGCAGAACGAGAGA+AGG | 0.533330 | 5.1:-492173 | MS.gene92342:CDS |
| GGCTCGGGAGGAACAATACA+AGG | 0.540595 | 5.1:-491949 | MS.gene92342:CDS |
| AGGGAAGGAGAAAGAAGAGG+AGG | 0.544345 | 5.1:-492045 | MS.gene92342:CDS |
| TGCTAAATATGAAGGGTCCA+AGG | 0.545406 | 5.1:-491205 | MS.gene92342:CDS |
| ATGAGGAGTTTGTGGATGAA+GGG | 0.546674 | 5.1:-492064 | MS.gene92342:CDS |
| GGGAAGGAGAAAGAAGAGGA+GGG | 0.549282 | 5.1:-492044 | MS.gene92342:CDS |
| ACATGTTATTTCTGGCTGCA+GGG | 0.549403 | 5.1:+491583 | None:intergenic |
| TGTTCTGCAGATTATGCTGT+TGG | 0.552262 | 5.1:-492627 | MS.gene92342:CDS |
| AATTTGTCTAACCCAGTGGC+TGG | 0.553884 | 5.1:-491684 | MS.gene92342:CDS |
| GAGAGCAGAACGAGAGAAGG+AGG | 0.556814 | 5.1:-492170 | MS.gene92342:CDS |
| ACCACCCTGCTCTAATCCCT+CGG | 0.557966 | 5.1:+491452 | None:intergenic |
| AGTGATAAGAAAGTCTCAGT+TGG | 0.557973 | 5.1:-492536 | MS.gene92342:CDS |
| GTACCTCTGTCATGTCCTTG+AGG | 0.558334 | 5.1:+491085 | None:intergenic |
| GATGAGAGCAGAACGAGAGA+AGG | 0.558452 | 5.1:-492326 | MS.gene92342:CDS |
| GGAAGATGAGAATATTGTAG+AGG | 0.560456 | 5.1:-492417 | MS.gene92342:CDS |
| CAACAGATCTAAAGGCATCA+AGG | 0.565273 | 5.1:-492657 | MS.gene92342:CDS |
| GCGTTCTCACGATAAGAAGA+AGG | 0.567366 | 5.1:-492570 | MS.gene92342:CDS |
| GTGTCTATCAAAGTATATCA+AGG | 0.570233 | 5.1:+491641 | None:intergenic |
| TCAAAATGAAAAGCATGAAG+AGG | 0.571274 | 5.1:-492444 | MS.gene92342:CDS |
| AAAGAGGACGATGAAAGAGG+GGG | 0.572846 | 5.1:-492143 | MS.gene92342:CDS |
| TTATAATTCTCATATCCTCA+AGG | 0.573636 | 5.1:-491100 | MS.gene92342:CDS |
| CAACATTCATGAGGCTCGGG+AGG | 0.581579 | 5.1:-491961 | MS.gene92342:CDS |
| TGAAGGGAAGGAGAAAGAAG+AGG | 0.582603 | 5.1:-492048 | MS.gene92342:CDS |
| ACGAGAGAAGGAGAAGGAGA+AGG | 0.584082 | 5.1:-492314 | MS.gene92342:CDS |
| AATTATAAGAATCAGTGGCT+TGG | 0.585787 | 5.1:+491115 | None:intergenic |
| AGAAGTTAAACTGGTTGTTG+GGG | 0.586941 | 5.1:-491748 | MS.gene92342:CDS |
| ATGGACTGCTAAGTTGGAGC+CGG | 0.591756 | 5.1:+491404 | None:intergenic |
| AAAAGAGGAAGATGAAACTG+GGG | 0.595044 | 5.1:-492285 | MS.gene92342:CDS |
| GATGGTATCAGGAGTCAACC+TGG | 0.595196 | 5.1:-491789 | MS.gene92342:CDS |
| CTAATGCTGCTAAATATGAA+GGG | 0.595625 | 5.1:-491212 | MS.gene92342:CDS |
| AGATGAATCTTCAAATCTAG+AGG | 0.599916 | 5.1:-491352 | MS.gene92342:CDS |
| GCTAAATATGAAGGGTCCAA+GGG | 0.599933 | 5.1:-491204 | MS.gene92342:CDS |
| ATTGTGTTCAGACGATGTGT+CGG | 0.604098 | 5.1:+491554 | None:intergenic |
| AGCAGAACGAGAGAAGGAGA+AGG | 0.605886 | 5.1:-492320 | MS.gene92342:CDS |
| TGATTTACTTCATTCTTACC+CGG | 0.607541 | 5.1:+492464 | None:intergenic |
| AGAAATGTAGGAGATAATGA+TGG | 0.608490 | 5.1:-491033 | MS.gene92342:CDS |
| ATGAGAATTATAAGAATCAG+TGG | 0.611143 | 5.1:+491110 | None:intergenic |
| TTTGATGAGAACCAGCCACT+GGG | 0.627617 | 5.1:+491673 | None:intergenic |
| GATGAATCTTCAAATCTAGA+GGG | 0.629674 | 5.1:-491351 | MS.gene92342:CDS |
| GTAATACTAAAATTGGAACC+AGG | 0.635984 | 5.1:+491771 | None:intergenic |
| CTCGGGAGGAACAATACAAG+GGG | 0.664138 | 5.1:-491947 | MS.gene92342:CDS |
| GAATCTTCAAATCTAGAGGG+TGG | 0.667924 | 5.1:-491348 | MS.gene92342:CDS |
| GAAGGAGAACGAAAACAGCA+AGG | 0.672903 | 5.1:-492015 | MS.gene92342:CDS |
| TGAAAGCAACAACATTCATG+AGG | 0.674356 | 5.1:-491970 | MS.gene92342:CDS |
| CAAAATGAACACGAAGAACG+GGG | 0.677137 | 5.1:-492224 | MS.gene92342:CDS |
| CAGACCGAGGGATTAGAGCA+GGG | 0.679001 | 5.1:-491456 | MS.gene92342:CDS |
| AGAGGTGGTTGATCGCAATG+AGG | 0.693637 | 5.1:-492081 | MS.gene92342:CDS |
| TGTACGAGTATCATGAGTGA+CGG | 0.695658 | 5.1:+491908 | None:intergenic |
| TGATCCTGAGAAACCAGAGG+TGG | 0.697094 | 5.1:-492096 | MS.gene92342:CDS |
| AATGAACACGAAGAACGGGG+TGG | 0.704025 | 5.1:-492221 | MS.gene92342:CDS |
| CAACAATTTGTCTAACCCAG+TGG | 0.709069 | 5.1:-491688 | MS.gene92342:CDS |
| GCTCGGGAGGAACAATACAA+GGG | 0.714403 | 5.1:-491948 | MS.gene92342:CDS |
| AAATGATCCTGAGAAACCAG+AGG | 0.721754 | 5.1:-492099 | MS.gene92342:CDS |
| TATCCTCAAGGACATGACAG+AGG | 0.731803 | 5.1:-491088 | MS.gene92342:CDS |
| ACCGAGGGATTAGAGCAGGG+TGG | 0.749722 | 5.1:-491453 | MS.gene92342:CDS |
| TCGGGAGGAACAATACAAGG+GGG | 0.791856 | 5.1:-491946 | MS.gene92342:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTTCTGTAATACTAAAAT+TGG | + | chr5.1:491933-491952 | None:intergenic | 20.0% |
| ! | ATACCATCTTCTGTATAATT+AGG | + | chr5.1:491893-491912 | None:intergenic | 25.0% |
| ! | ATGAGAATTATAAGAATCAG+TGG | + | chr5.1:492587-492606 | None:intergenic | 25.0% |
| ! | ATTAGTGTTCTCATTCATAT+AGG | + | chr5.1:492467-492486 | None:intergenic | 25.0% |
| ! | TAGTATTACAGAAGTTAAAC+TGG | - | chr5.1:491937-491956 | MS.gene92342:CDS | 25.0% |
| ! | TCAAATTCATCCTTTATGAA+TGG | - | chr5.1:492535-492554 | MS.gene92342:CDS | 25.0% |
| ! | TTATAATTCTCATATCCTCA+AGG | - | chr5.1:492594-492613 | MS.gene92342:CDS | 25.0% |
| !!! | AATAAAATGGTAACGTTTTC+AGG | - | chr5.1:492160-492179 | MS.gene92342:CDS | 25.0% |
| !!! | CTCTATTTTCTGTTTTAACA+TGG | + | chr5.1:492312-492331 | None:intergenic | 25.0% |
| AAAAAGAGGAAGATGAAACT+GGG | - | chr5.1:491408-491427 | MS.gene92342:CDS | 30.0% | |
| AACAAAATGAACACGAAGAA+CGG | - | chr5.1:491468-491487 | MS.gene92342:CDS | 30.0% | |
| AAGCCTAATTATACAGAAGA+TGG | - | chr5.1:491887-491906 | MS.gene92342:CDS | 30.0% | |
| AATGAACACGAAGAAAGAAA+CGG | - | chr5.1:491320-491339 | MS.gene92342:CDS | 30.0% | |
| AATTATAAGAATCAGTGGCT+TGG | + | chr5.1:492582-492601 | None:intergenic | 30.0% | |
| ACTAATGCTGCTAAATATGA+AGG | - | chr5.1:492481-492500 | MS.gene92342:CDS | 30.0% | |
| AGAAATGTAGGAGATAATGA+TGG | - | chr5.1:492661-492680 | MS.gene92342:CDS | 30.0% | |
| AGATGAATCTTCAAATCTAG+AGG | - | chr5.1:492342-492361 | MS.gene92342:CDS | 30.0% | |
| ATCCTTTATGAATGGAACTT+CGG | - | chr5.1:492543-492562 | MS.gene92342:CDS | 30.0% | |
| ATCGTCTGAACACAATAAAA+TGG | - | chr5.1:492147-492166 | MS.gene92342:CDS | 30.0% | |
| ATGCCAGATAATAGAAATGT+AGG | - | chr5.1:492649-492668 | MS.gene92342:CDS | 30.0% | |
| ATTATACAGAAGATGGTATC+AGG | - | chr5.1:491894-491913 | MS.gene92342:CDS | 30.0% | |
| CTAATGCTGCTAAATATGAA+GGG | - | chr5.1:492482-492501 | MS.gene92342:CDS | 30.0% | |
| GATGAATCTTCAAATCTAGA+GGG | - | chr5.1:492343-492362 | MS.gene92342:CDS | 30.0% | |
| GTAATACTAAAATTGGAACC+AGG | + | chr5.1:491926-491945 | None:intergenic | 30.0% | |
| GTGTCTATCAAAGTATATCA+AGG | + | chr5.1:492056-492075 | None:intergenic | 30.0% | |
| TCTCCTACATTTCTATTATC+TGG | + | chr5.1:492655-492674 | None:intergenic | 30.0% | |
| TGATTTACTTCATTCTTACC+CGG | + | chr5.1:491233-491252 | None:intergenic | 30.0% | |
| TTCATTACCAGAACTTGAAT+TGG | + | chr5.1:491978-491997 | None:intergenic | 30.0% | |
| ! | GTTTCTAAAGAAAACTTGTC+CGG | - | chr5.1:492271-492290 | MS.gene92342:CDS | 30.0% |
| ! | TCAAAATGAAAAGCATGAAG+AGG | - | chr5.1:491250-491269 | MS.gene92342:CDS | 30.0% |
| !! | ACTTTTAATTCAACAGTCAC+TGG | - | chr5.1:492199-492218 | MS.gene92342:CDS | 30.0% |
| AAAAAGAGGACGATGAAAGA+GGG | - | chr5.1:491549-491568 | MS.gene92342:CDS | 35.0% | |
| AAAAGAGGAAGATGAAACTG+GGG | - | chr5.1:491409-491428 | MS.gene92342:CDS | 35.0% | |
| ACAAAATGAACACGAAGAAC+GGG | - | chr5.1:491469-491488 | MS.gene92342:CDS | 35.0% | |
| ACAGAAGTTAAACTGGTTGT+TGG | - | chr5.1:491944-491963 | MS.gene92342:CDS | 35.0% | |
| AGAAGTTAAACTGGTTGTTG+GGG | - | chr5.1:491946-491965 | MS.gene92342:CDS | 35.0% | |
| AGTGATAAGAAAGTCTCAGT+TGG | - | chr5.1:491158-491177 | MS.gene92342:CDS | 35.0% | |
| ATCCGAAGTTCCATTCATAA+AGG | + | chr5.1:492548-492567 | None:intergenic | 35.0% | |
| ATGAACACGAAGAAAGAAAC+GGG | - | chr5.1:491321-491340 | MS.gene92342:CDS | 35.0% | |
| CAGAAGTTAAACTGGTTGTT+GGG | - | chr5.1:491945-491964 | MS.gene92342:CDS | 35.0% | |
| GAAAAAGAGGAAGATGAAAC+TGG | - | chr5.1:491407-491426 | MS.gene92342:CDS | 35.0% | |
| GGAAGATGAGAATATTGTAG+AGG | - | chr5.1:491277-491296 | MS.gene92342:CDS | 35.0% | |
| GGCTATCAGATTACAAAACT+TGG | - | chr5.1:491191-491210 | MS.gene92342:CDS | 35.0% | |
| TCTGATGTAAACGCAGAAAT+GGG | - | chr5.1:491845-491864 | MS.gene92342:CDS | 35.0% | |
| TGAAAGCAACAACATTCATG+AGG | - | chr5.1:491724-491743 | MS.gene92342:CDS | 35.0% | |
| TGGAAGAAAAGATCTTCTTC+CGG | - | chr5.1:491211-491230 | MS.gene92342:CDS | 35.0% | |
| ! | GCTTATTCCAATTCAAGTTC+TGG | - | chr5.1:491968-491987 | MS.gene92342:CDS | 35.0% |
| ! | TCAAGTTCTGGTAATGAAAC+TGG | - | chr5.1:491980-491999 | MS.gene92342:CDS | 35.0% |
| ! | TTTAACATGGACTGCTAAGT+TGG | + | chr5.1:492299-492318 | None:intergenic | 35.0% |
| AAAAGAGGACGATGAAAGAG+GGG | - | chr5.1:491550-491569 | MS.gene92342:CDS | 40.0% | |
| AAATGATCCTGAGAAACCAG+AGG | - | chr5.1:491595-491614 | MS.gene92342:CDS | 40.0% | |
| AACGAAAACAGCAAGGATGA+AGG | - | chr5.1:491686-491705 | MS.gene92342:CDS | 40.0% | |
| AATGAGGAGTTTGTGGATGA+AGG | - | chr5.1:491629-491648 | MS.gene92342:CDS | 40.0% | |
| AGCAAGGATGAAGGAAATCA+AGG | - | chr5.1:491695-491714 | MS.gene92342:CDS | 40.0% | |
| AGCAGGAACAACAGATCTAA+AGG | - | chr5.1:491029-491048 | MS.gene92342:CDS | 40.0% | |
| ATGAGGAGTTTGTGGATGAA+GGG | - | chr5.1:491630-491649 | MS.gene92342:CDS | 40.0% | |
| ATTGTGTTCAGACGATGTGT+CGG | + | chr5.1:492143-492162 | None:intergenic | 40.0% | |
| CAAAATGAACACGAAGAACG+GGG | - | chr5.1:491470-491489 | MS.gene92342:CDS | 40.0% | |
| CAACAATTTGTCTAACCCAG+TGG | - | chr5.1:492006-492025 | MS.gene92342:CDS | 40.0% | |
| CTCTGATGTAAACGCAGAAA+TGG | - | chr5.1:491844-491863 | MS.gene92342:CDS | 40.0% | |
| GAAAAAGAGGACGATGAAAG+AGG | - | chr5.1:491548-491567 | MS.gene92342:CDS | 40.0% | |
| GAATCTTCAAATCTAGAGGG+TGG | - | chr5.1:492346-492365 | MS.gene92342:CDS | 40.0% | |
| GCTAAATATGAAGGGTCCAA+GGG | - | chr5.1:492490-492509 | MS.gene92342:CDS | 40.0% | |
| GGAAGAAAAGATCTTCTTCC+GGG | - | chr5.1:491212-491231 | MS.gene92342:CDS | 40.0% | |
| GGATGAAGGAAATCAAGGTT+TGG | - | chr5.1:491700-491719 | MS.gene92342:CDS | 40.0% | |
| TGCTAAATATGAAGGGTCCA+AGG | - | chr5.1:492489-492508 | MS.gene92342:CDS | 40.0% | |
| TGTACGAGTATCATGAGTGA+CGG | + | chr5.1:491789-491808 | None:intergenic | 40.0% | |
| TGTTCTGCAGATTATGCTGT+TGG | - | chr5.1:491067-491086 | MS.gene92342:CDS | 40.0% | |
| ! | GTATAATTAGGCTTGCTCTC+TGG | + | chr5.1:491881-491900 | None:intergenic | 40.0% |
| ! | TGAAAAGCATGAAGAGGAAG+AGG | - | chr5.1:491256-491275 | MS.gene92342:CDS | 40.0% |
| ! | TGTTGGTTGGTATTTGCTTC+TGG | - | chr5.1:491084-491103 | MS.gene92342:CDS | 40.0% |
| !! | ACATGTTATTTCTGGCTGCA+GGG | + | chr5.1:492114-492133 | None:intergenic | 40.0% |
| !! | CAACAGATCTAAAGGCATCA+AGG | - | chr5.1:491037-491056 | MS.gene92342:CDS | 40.0% |
| !! | GGTTCCTGACATGTTATTTC+TGG | + | chr5.1:492122-492141 | None:intergenic | 40.0% |
| AAAGAGGACGATGAAAGAGG+GGG | - | chr5.1:491551-491570 | MS.gene92342:CDS | 45.0% | |
| AATTTGTCTAACCCAGTGGC+TGG | - | chr5.1:492010-492029 | MS.gene92342:CDS | 45.0% | |
| ACAGAAAATAGAGCTGCAGC+TGG | - | chr5.1:492319-492338 | MS.gene92342:CDS | 45.0% | |
| AGGAGAAGGTGGAGAAAAAG+AGG | - | chr5.1:491394-491413 | MS.gene92342:CDS | 45.0% | |
| CAACAACATTCATGAGGCTC+GGG | - | chr5.1:491730-491749 | MS.gene92342:CDS | 45.0% | |
| CTGCAGATTATGCTGTTGGT+TGG | - | chr5.1:491071-491090 | MS.gene92342:CDS | 45.0% | |
| CTGCAGGGACAACTATTGTA+AGG | + | chr5.1:492099-492118 | None:intergenic | 45.0% | |
| GAAGGAGAACGAAAACAGCA+AGG | - | chr5.1:491679-491698 | MS.gene92342:CDS | 45.0% | |
| GAGAGAAGGAGGAGAAAAAG+AGG | - | chr5.1:491535-491554 | MS.gene92342:CDS | 45.0% | |
| GCAACAACATTCATGAGGCT+CGG | - | chr5.1:491729-491748 | MS.gene92342:CDS | 45.0% | |
| GCAGCCAGAAATAACATGTC+AGG | - | chr5.1:492115-492134 | MS.gene92342:CDS | 45.0% | |
| GCGTTCTCACGATAAGAAGA+AGG | - | chr5.1:491124-491143 | MS.gene92342:CDS | 45.0% | |
| GTCTCAGTTGGAGCTCAAAA+TGG | - | chr5.1:491170-491189 | MS.gene92342:CDS | 45.0% | |
| GTGAAAAATGTGCAGACCGA+GGG | - | chr5.1:492226-492245 | MS.gene92342:CDS | 45.0% | |
| TATCCTCAAGGACATGACAG+AGG | - | chr5.1:492606-492625 | MS.gene92342:CDS | 45.0% | |
| TGAAGGGAAGGAGAAAGAAG+AGG | - | chr5.1:491646-491665 | MS.gene92342:CDS | 45.0% | |
| TGATAAAACGGTCGTCAAGC+AGG | - | chr5.1:491012-491031 | MS.gene92342:CDS | 45.0% | |
| TGATCGCAATGAGGAGTTTG+TGG | - | chr5.1:491622-491641 | MS.gene92342:CDS | 45.0% | |
| TGTGAAAAATGTGCAGACCG+AGG | - | chr5.1:492225-492244 | MS.gene92342:CDS | 45.0% | |
| TTTGATGAGAACCAGCCACT+GGG | + | chr5.1:492024-492043 | None:intergenic | 45.0% | |
| ! | TTGCTTCTGGCTGATCTATC+AGG | - | chr5.1:491097-491116 | MS.gene92342:CDS | 45.0% |
| ! | TTTTGATGAGAACCAGCCAC+TGG | + | chr5.1:492025-492044 | None:intergenic | 45.0% |
| !! | GACATGTTATTTCTGGCTGC+AGG | + | chr5.1:492115-492134 | None:intergenic | 45.0% |
| AATGAACACGAAGAACGGGG+TGG | - | chr5.1:491473-491492 | MS.gene92342:CDS | 50.0% | |
| ACGAGAGAAGGAGAAGGAGA+AGG | - | chr5.1:491380-491399 | MS.gene92342:CDS | 50.0% | |
| ACTTACTTGCGTGTCACCCT+TGG | + | chr5.1:492509-492528 | None:intergenic | 50.0% | |
| AGAAGAGGAGGGTGATGAGA+AGG | - | chr5.1:491661-491680 | MS.gene92342:CDS | 50.0% | |
| AGAGAAGGAGAAGGAGAAGG+TGG | - | chr5.1:491383-491402 | MS.gene92342:CDS | 50.0% | |
| AGAGGTGGTTGATCGCAATG+AGG | - | chr5.1:491613-491632 | MS.gene92342:CDS | 50.0% | |
| AGCAGAACGAGAGAAGGAGA+AGG | - | chr5.1:491374-491393 | MS.gene92342:CDS | 50.0% | |
| AGGGAAGGAGAAAGAAGAGG+AGG | - | chr5.1:491649-491668 | MS.gene92342:CDS | 50.0% | |
| AGGGGGAGAAGATGATGAGA+TGG | - | chr5.1:491568-491587 | MS.gene92342:CDS | 50.0% | |
| CTCGGGAGGAACAATACAAG+GGG | - | chr5.1:491747-491766 | MS.gene92342:CDS | 50.0% | |
| GATGAGAGCAGAACGAGAGA+AGG | - | chr5.1:491368-491387 | MS.gene92342:CDS | 50.0% | |
| GATGGTATCAGGAGTCAACC+TGG | - | chr5.1:491905-491924 | MS.gene92342:CDS | 50.0% | |
| GCTCGGGAGGAACAATACAA+GGG | - | chr5.1:491746-491765 | MS.gene92342:CDS | 50.0% | |
| GGAGTTTGTGGATGAAGGGA+AGG | - | chr5.1:491634-491653 | MS.gene92342:CDS | 50.0% | |
| GGGAAGGAGAAAGAAGAGGA+GGG | - | chr5.1:491650-491669 | MS.gene92342:CDS | 50.0% | |
| GTACCTCTGTCATGTCCTTG+AGG | + | chr5.1:492612-492631 | None:intergenic | 50.0% | |
| TCATTGCGATCAACCACCTC+TGG | + | chr5.1:491614-491633 | None:intergenic | 50.0% | |
| TCGGGAGGAACAATACAAGG+GGG | - | chr5.1:491748-491767 | MS.gene92342:CDS | 50.0% | |
| TGATCCTGAGAAACCAGAGG+TGG | - | chr5.1:491598-491617 | MS.gene92342:CDS | 50.0% | |
| ! | ATGGACTGCTAAGTTGGAGC+CGG | + | chr5.1:492293-492312 | None:intergenic | 50.0% |
| ! | TCAACCACCTCTGGTTTCTC+AGG | + | chr5.1:491605-491624 | None:intergenic | 50.0% |
| ACCACCCTGCTCTAATCCCT+CGG | + | chr5.1:492245-492264 | None:intergenic | 55.0% | |
| CAACATTCATGAGGCTCGGG+AGG | - | chr5.1:491733-491752 | MS.gene92342:CDS | 55.0% | |
| CAGACCGAGGGATTAGAGCA+GGG | - | chr5.1:492238-492257 | MS.gene92342:CDS | 55.0% | |
| GACGAGAGCAGAACGAGAGA+AGG | - | chr5.1:491521-491540 | MS.gene92342:CDS | 55.0% | |
| GAGAGCAGAACGAGAGAAGG+AGG | - | chr5.1:491371-491390 | MS.gene92342:CDS | 55.0% | |
| GGCTCGGGAGGAACAATACA+AGG | - | chr5.1:491745-491764 | MS.gene92342:CDS | 55.0% | |
| ACCGAGGGATTAGAGCAGGG+TGG | - | chr5.1:492241-492260 | MS.gene92342:CDS | 60.0% | |
| GCAGACCGAGGGATTAGAGC+AGG | - | chr5.1:492237-492256 | MS.gene92342:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 491011 | 492705 | 491011 | ID=MS.gene92342 |
| chr5.1 | mRNA | 491011 | 492705 | 491011 | ID=MS.gene92342.t1;Parent=MS.gene92342 |
| chr5.1 | exon | 491011 | 492705 | 491011 | ID=MS.gene92342.t1.exon1;Parent=MS.gene92342.t1 |
| chr5.1 | CDS | 491011 | 492705 | 491011 | ID=cds.MS.gene92342.t1;Parent=MS.gene92342.t1 |
| Gene Sequence |
| Protein sequence |
