Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92982.t1 | XP_013470093.1 | 76.4 | 377 | 14 | 2 | 1 | 305 | 1 | 374 | 2.50E-139 | 505 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92982.t1 | A2RVM8 | 34.6 | 350 | 109 | 9 | 1 | 267 | 1 | 313 | 2.6e-28 | 127.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92982.t1 | A0A072VR18 | 76.4 | 377 | 14 | 2 | 1 | 305 | 1 | 374 | 1.8e-139 | 505.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene92982 | 0.826017 | 3.42E-54 | -1.69E-46 |
| MS.gene049672 | MS.gene92982 | 0.811673 | 6.22E-51 | -1.69E-46 |
| MS.gene050310 | MS.gene92982 | 0.802722 | 4.90E-49 | -1.69E-46 |
| MS.gene051018 | MS.gene92982 | 0.80126 | 9.79E-49 | -1.69E-46 |
| MS.gene051199 | MS.gene92982 | 0.819785 | 9.68E-53 | -1.69E-46 |
| MS.gene051263 | MS.gene92982 | 0.810806 | 9.60E-51 | -1.69E-46 |
| MS.gene051478 | MS.gene92982 | 0.804035 | 2.62E-49 | -1.69E-46 |
| MS.gene05157 | MS.gene92982 | 0.813527 | 2.45E-51 | -1.69E-46 |
| MS.gene051664 | MS.gene92982 | 0.804394 | 2.21E-49 | -1.69E-46 |
| MS.gene051720 | MS.gene92982 | 0.802558 | 5.30E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene92982 | 0.801278 | 9.71E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene92982 | 0.836124 | 1.12E-56 | -1.69E-46 |
| MS.gene053536 | MS.gene92982 | 0.81394 | 1.98E-51 | -1.69E-46 |
| MS.gene053538 | MS.gene92982 | 0.812724 | 3.67E-51 | -1.69E-46 |
| MS.gene054584 | MS.gene92982 | 0.82565 | 4.18E-54 | -1.69E-46 |
| MS.gene055465 | MS.gene92982 | 0.822512 | 2.28E-53 | -1.69E-46 |
| MS.gene055466 | MS.gene92982 | 0.81654 | 5.25E-52 | -1.69E-46 |
| MS.gene055537 | MS.gene92982 | 0.807977 | 3.88E-50 | -1.69E-46 |
| MS.gene055580 | MS.gene92982 | -0.820975 | 5.16E-53 | -1.69E-46 |
| MS.gene056169 | MS.gene92982 | 0.816587 | 5.12E-52 | -1.69E-46 |
| MS.gene056228 | MS.gene92982 | 0.846477 | 2.12E-59 | -1.69E-46 |
| MS.gene05894 | MS.gene92982 | 0.816577 | 5.15E-52 | -1.69E-46 |
| MS.gene060519 | MS.gene92982 | 0.829014 | 6.52E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92982.t1 | MTR_1g107565 | 93.043 | 230 | 13 | 1 | 76 | 305 | 148 | 374 | 7.06e-143 | 407 |
| MS.gene92982.t1 | MTR_1g107565 | 100.000 | 77 | 0 | 0 | 1 | 77 | 1 | 77 | 3.43e-48 | 165 |
| MS.gene92982.t1 | MTR_2g022250 | 71.429 | 77 | 19 | 1 | 1 | 77 | 1 | 74 | 7.99e-30 | 118 |
| MS.gene92982.t1 | MTR_4g117140 | 68.831 | 77 | 21 | 1 | 1 | 77 | 1 | 74 | 2.49e-28 | 114 |
| MS.gene92982.t1 | MTR_4g117220 | 68.831 | 77 | 21 | 1 | 1 | 77 | 1 | 74 | 3.31e-28 | 114 |
| MS.gene92982.t1 | MTR_1g082650 | 67.532 | 77 | 22 | 1 | 1 | 77 | 1 | 74 | 7.52e-28 | 113 |
| MS.gene92982.t1 | MTR_4g065780 | 87.273 | 55 | 7 | 0 | 201 | 255 | 31 | 85 | 1.09e-26 | 105 |
| MS.gene92982.t1 | MTR_7g108560 | 67.606 | 71 | 23 | 0 | 7 | 77 | 16 | 86 | 3.23e-26 | 105 |
| MS.gene92982.t1 | MTR_2g022240 | 64.935 | 77 | 24 | 1 | 1 | 77 | 1 | 74 | 1.52e-23 | 100 |
| MS.gene92982.t1 | MTR_7g113110 | 61.538 | 65 | 25 | 0 | 13 | 77 | 33 | 97 | 3.20e-21 | 92.8 |
| MS.gene92982.t1 | MTR_3g067750 | 56.716 | 67 | 29 | 0 | 10 | 76 | 9 | 75 | 3.50e-20 | 87.0 |
| MS.gene92982.t1 | MTR_4g119820 | 58.209 | 67 | 28 | 0 | 10 | 76 | 71 | 137 | 8.49e-20 | 88.6 |
| MS.gene92982.t1 | MTR_2g436830 | 60.000 | 70 | 28 | 0 | 10 | 79 | 12 | 81 | 1.12e-18 | 84.7 |
| MS.gene92982.t1 | MTR_1g083310 | 55.072 | 69 | 30 | 1 | 10 | 77 | 12 | 80 | 2.21e-17 | 82.0 |
| MS.gene92982.t1 | MTR_8g091420 | 37.190 | 121 | 70 | 3 | 14 | 129 | 30 | 149 | 6.20e-15 | 71.2 |
| MS.gene92982.t1 | MTR_3g087770 | 50.746 | 67 | 33 | 0 | 11 | 77 | 28 | 94 | 1.11e-14 | 70.5 |
| MS.gene92982.t1 | MTR_5g097550 | 54.688 | 64 | 28 | 1 | 15 | 77 | 15 | 78 | 9.32e-14 | 70.1 |
| MS.gene92982.t1 | MTR_1g030630 | 43.939 | 66 | 37 | 0 | 12 | 77 | 24 | 89 | 1.25e-13 | 67.4 |
| MS.gene92982.t1 | MTR_5g025150 | 39.394 | 66 | 40 | 0 | 12 | 77 | 22 | 87 | 1.62e-12 | 64.3 |
| MS.gene92982.t1 | MTR_1g078090 | 38.889 | 72 | 44 | 0 | 10 | 81 | 50 | 121 | 2.39e-12 | 65.1 |
| MS.gene92982.t1 | MTR_6g026890 | 37.705 | 61 | 38 | 0 | 17 | 77 | 20 | 80 | 3.14e-12 | 63.5 |
| MS.gene92982.t1 | MTR_4g073040 | 40.845 | 71 | 41 | 1 | 8 | 77 | 23 | 93 | 4.01e-12 | 63.5 |
| MS.gene92982.t1 | MTR_2g091235 | 41.935 | 62 | 36 | 0 | 17 | 78 | 6 | 67 | 5.06e-12 | 62.8 |
| MS.gene92982.t1 | MTR_1g092670 | 40.909 | 66 | 39 | 0 | 13 | 78 | 4 | 69 | 5.84e-12 | 60.8 |
| MS.gene92982.t1 | MTR_7g013660 | 40.000 | 65 | 39 | 0 | 13 | 77 | 4 | 68 | 2.34e-11 | 60.8 |
| MS.gene92982.t1 | MTR_3g117890 | 39.706 | 68 | 40 | 1 | 11 | 77 | 24 | 91 | 2.54e-11 | 61.2 |
| MS.gene92982.t1 | MTR_3g435930 | 36.905 | 84 | 52 | 1 | 12 | 94 | 115 | 198 | 3.74e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92982.t1 | AT1G23000 | 61.607 | 112 | 42 | 1 | 1 | 112 | 1 | 111 | 3.13e-36 | 133 |
| MS.gene92982.t1 | AT1G23000 | 61.607 | 112 | 42 | 1 | 1 | 112 | 61 | 171 | 1.52e-35 | 132 |
| MS.gene92982.t1 | AT3G06130 | 72.727 | 77 | 18 | 1 | 1 | 77 | 1 | 74 | 9.98e-33 | 124 |
| MS.gene92982.t1 | AT3G06130 | 72.727 | 77 | 18 | 1 | 1 | 77 | 1 | 74 | 2.86e-32 | 125 |
| MS.gene92982.t1 | AT5G19090 | 71.429 | 77 | 19 | 1 | 1 | 77 | 1 | 74 | 3.50e-31 | 122 |
| MS.gene92982.t1 | AT5G19090 | 71.429 | 77 | 19 | 1 | 1 | 77 | 1 | 74 | 3.50e-31 | 122 |
| MS.gene92982.t1 | AT5G19090 | 71.429 | 77 | 19 | 1 | 1 | 77 | 1 | 74 | 9.08e-31 | 121 |
| MS.gene92982.t1 | AT5G19090 | 71.429 | 77 | 19 | 1 | 1 | 77 | 1 | 74 | 9.08e-31 | 121 |
| MS.gene92982.t1 | AT5G19090 | 71.429 | 77 | 19 | 1 | 1 | 77 | 1 | 74 | 9.08e-31 | 121 |
| MS.gene92982.t1 | AT3G05220 | 63.768 | 69 | 25 | 0 | 9 | 77 | 6 | 74 | 1.14e-24 | 104 |
| MS.gene92982.t1 | AT5G27690 | 54.054 | 74 | 33 | 1 | 5 | 77 | 21 | 94 | 2.57e-22 | 95.9 |
| MS.gene92982.t1 | AT5G37860 | 55.385 | 65 | 29 | 0 | 12 | 76 | 9 | 73 | 8.16e-18 | 81.6 |
| MS.gene92982.t1 | AT1G56210 | 57.143 | 63 | 27 | 0 | 13 | 75 | 40 | 102 | 2.48e-17 | 81.6 |
| MS.gene92982.t1 | AT1G06330 | 43.284 | 67 | 38 | 0 | 12 | 78 | 1 | 67 | 7.78e-14 | 68.2 |
| MS.gene92982.t1 | AT3G56891 | 42.623 | 61 | 35 | 0 | 17 | 77 | 20 | 80 | 8.46e-13 | 65.9 |
| MS.gene92982.t1 | AT1G71050 | 40.909 | 66 | 39 | 0 | 12 | 77 | 27 | 92 | 5.52e-12 | 63.2 |
| MS.gene92982.t1 | AT3G56891 | 43.636 | 55 | 31 | 0 | 23 | 77 | 3 | 57 | 6.16e-12 | 62.8 |
| MS.gene92982.t1 | AT2G18196 | 39.706 | 68 | 41 | 0 | 10 | 77 | 43 | 110 | 1.50e-11 | 62.4 |
| MS.gene92982.t1 | AT5G66110 | 38.028 | 71 | 43 | 1 | 8 | 77 | 14 | 84 | 3.04e-11 | 60.8 |
| MS.gene92982.t1 | AT5G66110 | 38.028 | 71 | 43 | 1 | 8 | 77 | 14 | 84 | 3.04e-11 | 60.8 |
| MS.gene92982.t1 | AT1G66240 | 39.394 | 66 | 40 | 0 | 13 | 78 | 33 | 98 | 6.07e-11 | 58.9 |
Find 63 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATAACCATGTTCTGATT+TGG | 0.207548 | 1.2:+80408284 | None:intergenic |
| CAGCAGAAGGTAACAGTTTC+AGG | 0.218037 | 1.2:-80408704 | MS.gene92982:CDS |
| TCATAACCATGTTCTGATTT+GGG | 0.272787 | 1.2:+80408285 | None:intergenic |
| GCTGGTAGTGCTACTGTTCT+AGG | 0.303996 | 1.2:-80408089 | MS.gene92982:CDS |
| TTAACATAGATGGTGGATAT+TGG | 0.307758 | 1.2:+80407991 | None:intergenic |
| ACCAATGTCACTCGCCCTTT+TGG | 0.321785 | 1.2:+80408157 | None:intergenic |
| GGTGGAAATTCCAATGGTTT+AGG | 0.330691 | 1.2:-80408068 | MS.gene92982:CDS |
| TTCATGTTCATTAACATAGA+TGG | 0.342463 | 1.2:+80407981 | None:intergenic |
| CTTTAGCATCTGAAAATGAT+TGG | 0.354821 | 1.2:+80408394 | None:intergenic |
| GAAGTTGAACAATGCTCAAT+TGG | 0.375959 | 1.2:-80408219 | MS.gene92982:CDS |
| TTTGCATAGGAGTAATTTGC+AGG | 0.391852 | 1.2:+80407819 | None:intergenic |
| AAACTCCTTCAGAGAATTGA+AGG | 0.417205 | 1.2:-80409257 | MS.gene92982:intron |
| GTTATGAAGGAAGGTGCTAA+TGG | 0.420368 | 1.2:-80408269 | MS.gene92982:CDS |
| CCAGTAACAAAACCACCATT+TGG | 0.437509 | 1.2:+80408014 | None:intergenic |
| ATCAAGAAACTAGTAAGATC+TGG | 0.446205 | 1.2:-80408659 | MS.gene92982:CDS |
| TTGTAATAATAGCCAGTGTT+AGG | 0.451520 | 1.2:+80407858 | None:intergenic |
| CTTTAAGCTCCTTAAAATCC+AGG | 0.466184 | 1.2:-80409511 | MS.gene92982:intron |
| CAATGCTCAATTGGCTCAGT+TGG | 0.471941 | 1.2:-80408210 | MS.gene92982:CDS |
| AATGCTGGCAATGGAAATAG+TGG | 0.481459 | 1.2:-80408320 | MS.gene92982:CDS |
| AATGGAAATAGTGGCAAGAA+AGG | 0.499764 | 1.2:-80408311 | MS.gene92982:CDS |
| TCTATGTTAATGAACATGAA+TGG | 0.505347 | 1.2:-80407978 | MS.gene92982:CDS |
| TTATGAAGGAAGGTGCTAAT+GGG | 0.505662 | 1.2:-80408268 | MS.gene92982:CDS |
| AAATCAGAACATGGTTATGA+AGG | 0.507037 | 1.2:-80408282 | MS.gene92982:CDS |
| TTACATTATTGAACAGCTGC+TGG | 0.507630 | 1.2:+80407737 | None:intergenic |
| TCAACCTTGGAGAATCCAAA+AGG | 0.510252 | 1.2:-80408172 | MS.gene92982:CDS |
| TCCACTGCATCTATTCCAAA+TGG | 0.510572 | 1.2:-80408029 | MS.gene92982:CDS |
| TCCAAAAGGGCGAGTGACAT+TGG | 0.516238 | 1.2:-80408158 | MS.gene92982:CDS |
| GTTCTGCATCTATTTGAACT+TGG | 0.517770 | 1.2:+80408726 | None:intergenic |
| GGGAACAATAACAATGGTGC+TGG | 0.520248 | 1.2:-80408107 | MS.gene92982:CDS |
| GATGCAAACAATGTGAAGAA+AGG | 0.525694 | 1.2:-80408362 | MS.gene92982:CDS |
| GGTGCTATGATGAATTTAGC+TGG | 0.532345 | 1.2:-80408137 | MS.gene92982:CDS |
| GGAAATTCCAATGGTTTAGG+AGG | 0.533330 | 1.2:-80408065 | MS.gene92982:CDS |
| GCTCAATTGGCTCAGTTGGT+TGG | 0.533914 | 1.2:-80408206 | MS.gene92982:CDS |
| AGTGACCTTCAATTCTCTGA+AGG | 0.534789 | 1.2:+80409252 | None:intergenic |
| CCAGTGTTAGGAGGAACAAA+AGG | 0.539360 | 1.2:+80407870 | None:intergenic |
| AAGATGAACAATGCTGGCAA+TGG | 0.540672 | 1.2:-80408329 | MS.gene92982:CDS |
| GTTCTAGGTGGAAATTCCAA+TGG | 0.542544 | 1.2:-80408074 | MS.gene92982:CDS |
| CTGGAAAATATGCTGAGCTC+TGG | 0.547828 | 1.2:-80408640 | MS.gene92982:intron |
| AGCCTCAGATGATGTATCAC+AGG | 0.555215 | 1.2:-80407896 | MS.gene92982:CDS |
| CAGAACATGGTTATGAAGGA+AGG | 0.555580 | 1.2:-80408278 | MS.gene92982:CDS |
| ATCTTCATTGATGAACATGC+AGG | 0.556065 | 1.2:-80407940 | MS.gene92982:CDS |
| TGCATGTTCATCAATGAAGA+TGG | 0.558115 | 1.2:+80407942 | None:intergenic |
| ATAGCTAAGATGAACAATGC+TGG | 0.570218 | 1.2:-80408335 | MS.gene92982:CDS |
| ATGTTCATTAACATAGATGG+TGG | 0.570507 | 1.2:+80407984 | None:intergenic |
| AGGAAAACCTCCTAAACCAT+TGG | 0.574088 | 1.2:+80408058 | None:intergenic |
| TGCAAATGCTTGTCATCCAA+CGG | 0.579292 | 1.2:-80407802 | MS.gene92982:CDS |
| AATAGATGCAGAACAGCAGA+AGG | 0.582210 | 1.2:-80408717 | MS.gene92982:CDS |
| GGTAACAGTTTCAGGTAGTG+TGG | 0.582801 | 1.2:-80408696 | MS.gene92982:CDS |
| CAACCTTGGAGAATCCAAAA+GGG | 0.584061 | 1.2:-80408171 | MS.gene92982:CDS |
| ATAGATGCAGTGGATCCTGC+AGG | 0.590027 | 1.2:+80408038 | None:intergenic |
| TAATAATAGCCAGTGTTAGG+AGG | 0.598615 | 1.2:+80407861 | None:intergenic |
| ACCATTTGGAATAGATGCAG+TGG | 0.604596 | 1.2:+80408028 | None:intergenic |
| ACTGCATCTATTCCAAATGG+TGG | 0.607866 | 1.2:-80408026 | MS.gene92982:CDS |
| TGGATGACAAGCATTTGCAT+AGG | 0.623233 | 1.2:+80407806 | None:intergenic |
| GGTAATGAAAGTCTCAACCT+TGG | 0.624155 | 1.2:-80408185 | MS.gene92982:CDS |
| TTTAATGGGAACAATAACAA+TGG | 0.630005 | 1.2:-80408113 | MS.gene92982:CDS |
| GCTGCAGAGTGATCCTCCGT+TGG | 0.636749 | 1.2:+80407786 | None:intergenic |
| AAAGTGAACATTCACTGTGA+TGG | 0.643761 | 1.2:-80409299 | MS.gene92982:CDS |
| AGGAAACCCAAATCAGAACA+TGG | 0.652284 | 1.2:-80408291 | MS.gene92982:CDS |
| TGGGATTGAGCAGAAAACAA+TGG | 0.655937 | 1.2:-80408249 | MS.gene92982:CDS |
| GACCTGTGATACATCATCTG+AGG | 0.691567 | 1.2:+80407894 | None:intergenic |
| GGTAGTGCTACTGTTCTAGG+TGG | 0.717323 | 1.2:-80408086 | MS.gene92982:CDS |
| AAATGCTTGTCATCCAACGG+AGG | 0.734621 | 1.2:-80407799 | MS.gene92982:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAAGACCAAATATT+AGG | + | chr1.2:80407887-80407906 | None:intergenic | 15.0% |
| !! | TTTATGGATAATGTTAATAA+GGG | + | chr1.2:80407792-80407811 | None:intergenic | 15.0% |
| !!! | ATTGGTTTGATTTTTTTTTT+TGG | - | chr1.2:80408468-80408487 | MS.gene92982:intron | 15.0% |
| !!! | TTTTATGGATAATGTTAATA+AGG | + | chr1.2:80407793-80407812 | None:intergenic | 15.0% |
| !! | TAAAATAATAGAAGAGAGAA+GGG | + | chr1.2:80407855-80407874 | None:intergenic | 20.0% |
| !! | TGAATATTATGAATATGATG+AGG | - | chr1.2:80408803-80408822 | MS.gene92982:intron | 20.0% |
| !! | TTATGGATAATGTTAATAAG+GGG | + | chr1.2:80407791-80407810 | None:intergenic | 20.0% |
| !! | TTTCTTGAAGTTAAAATGTA+CGG | - | chr1.2:80408110-80408129 | MS.gene92982:CDS | 20.0% |
| !!! | ATTTTAACTTCAAGAAAACA+AGG | + | chr1.2:80408107-80408126 | None:intergenic | 20.0% |
| !!! | TAGTTTAGTTTCCTAATATT+TGG | - | chr1.2:80407873-80407892 | MS.gene92982:CDS | 20.0% |
| ! | AAAATAATAGAAGAGAGAAG+GGG | + | chr1.2:80407854-80407873 | None:intergenic | 25.0% |
| ! | ATAATATTCATCATCCTCTT+CGG | + | chr1.2:80408793-80408812 | None:intergenic | 25.0% |
| ! | CTAAAATAATAGAAGAGAGA+AGG | + | chr1.2:80407856-80407875 | None:intergenic | 25.0% |
| ! | TAAACACCTATAGAACAAAA+GGG | + | chr1.2:80408519-80408538 | None:intergenic | 25.0% |
| ! | TCTATGTTAATGAACATGAA+TGG | - | chr1.2:80409287-80409306 | MS.gene92982:CDS | 25.0% |
| ! | TTAAAGGGAGACATAAAAAA+TGG | - | chr1.2:80408252-80408271 | MS.gene92982:CDS | 25.0% |
| ! | TTCATGTTCATTAACATAGA+TGG | + | chr1.2:80409287-80409306 | None:intergenic | 25.0% |
| ! | TTTAATGGGAACAATAACAA+TGG | - | chr1.2:80409152-80409171 | MS.gene92982:intron | 25.0% |
| !! | TTTAGTTTACTCACAATGAT+GGG | - | chr1.2:80408206-80408225 | MS.gene92982:CDS | 25.0% |
| !!! | AGCATGTTGTTTTAGTTTTA+TGG | + | chr1.2:80407808-80407827 | None:intergenic | 25.0% |
| !!! | ATGAATTTAGCTGGTTTTAA+TGG | - | chr1.2:80409137-80409156 | MS.gene92982:intron | 25.0% |
| !!! | GCTACTTTTTAAATCTTCAA+TGG | - | chr1.2:80408328-80408347 | MS.gene92982:CDS | 25.0% |
| !!! | TGAATTTAGCTGGTTTTAAT+GGG | - | chr1.2:80409138-80409157 | MS.gene92982:intron | 25.0% |
| AAATAATAGAAGAGAGAAGG+GGG | + | chr1.2:80407853-80407872 | None:intergenic | 30.0% | |
| AAATCAGAACATGGTTATGA+AGG | - | chr1.2:80408983-80409002 | MS.gene92982:intron | 30.0% | |
| AAATCTTCAATGGAAAGCTT+AGG | - | chr1.2:80408338-80408357 | MS.gene92982:CDS | 30.0% | |
| AAGAACAAAGGACAAAAACA+AGG | - | chr1.2:80408711-80408730 | MS.gene92982:CDS | 30.0% | |
| ATACCTTAGTGTACACTATA+TGG | - | chr1.2:80408423-80408442 | MS.gene92982:intron | 30.0% | |
| ATCAAGAAACTAGTAAGATC+TGG | - | chr1.2:80408606-80408625 | MS.gene92982:intron | 30.0% | |
| ATGTTCATTAACATAGATGG+TGG | + | chr1.2:80409284-80409303 | None:intergenic | 30.0% | |
| CAAAAATCAGCAGAAATTTC+CGG | - | chr1.2:80408758-80408777 | MS.gene92982:intron | 30.0% | |
| CTTTAGCATCTGAAAATGAT+TGG | + | chr1.2:80408874-80408893 | None:intergenic | 30.0% | |
| GGTTAATGTAAACATCACAT+TGG | - | chr1.2:80408450-80408469 | MS.gene92982:intron | 30.0% | |
| GTAAACACCTATAGAACAAA+AGG | + | chr1.2:80408520-80408539 | None:intergenic | 30.0% | |
| TAACTCGCATGACTTATAAA+AGG | + | chr1.2:80408235-80408254 | None:intergenic | 30.0% | |
| TAGTGTACACTATATGGATA+TGG | - | chr1.2:80408429-80408448 | MS.gene92982:intron | 30.0% | |
| TATAAGTCATGCGAGTTAAA+GGG | - | chr1.2:80408237-80408256 | MS.gene92982:CDS | 30.0% | |
| TATCCATATAGTGTACACTA+AGG | + | chr1.2:80408429-80408448 | None:intergenic | 30.0% | |
| TCATAACCATGTTCTGATTT+GGG | + | chr1.2:80408983-80409002 | None:intergenic | 30.0% | |
| TTAGTTTACTCACAATGATG+GGG | - | chr1.2:80408207-80408226 | MS.gene92982:CDS | 30.0% | |
| TTATAAGTCATGCGAGTTAA+AGG | - | chr1.2:80408236-80408255 | MS.gene92982:CDS | 30.0% | |
| TTCATAACCATGTTCTGATT+TGG | + | chr1.2:80408984-80409003 | None:intergenic | 30.0% | |
| TTGTAATAATAGCCAGTGTT+AGG | + | chr1.2:80409410-80409429 | None:intergenic | 30.0% | |
| ! | GTTTAGTTTACTCACAATGA+TGG | - | chr1.2:80408205-80408224 | MS.gene92982:CDS | 30.0% |
| ! | TTTTGACCCTTTTGTTCTAT+AGG | - | chr1.2:80408510-80408529 | MS.gene92982:intron | 30.0% |
| !! | CTTTTGATTCTGATTGTTGT+TGG | + | chr1.2:80408661-80408680 | None:intergenic | 30.0% |
| !! | TTAACATAGATGGTGGATAT+TGG | + | chr1.2:80409277-80409296 | None:intergenic | 30.0% |
| !!! | ATTTTTTTTTTTGGCGTGCT+TGG | - | chr1.2:80408477-80408496 | MS.gene92982:intron | 30.0% |
| AAACTCCTTCAGAGAATTGA+AGG | - | chr1.2:80408008-80408027 | MS.gene92982:CDS | 35.0% | |
| AAAGTGAACATTCACTGTGA+TGG | - | chr1.2:80407966-80407985 | MS.gene92982:CDS | 35.0% | |
| AATAATAGAAGAGAGAAGGG+GGG | + | chr1.2:80407852-80407871 | None:intergenic | 35.0% | |
| AATGGAAATAGTGGCAAGAA+AGG | - | chr1.2:80408954-80408973 | MS.gene92982:intron | 35.0% | |
| ATAGCTAAGATGAACAATGC+TGG | - | chr1.2:80408930-80408949 | MS.gene92982:intron | 35.0% | |
| ATCTTCATTGATGAACATGC+AGG | - | chr1.2:80409325-80409344 | MS.gene92982:intron | 35.0% | |
| ATGTTAATAAGGGGAGAAAG+AGG | + | chr1.2:80407782-80407801 | None:intergenic | 35.0% | |
| CTTTAAGCTCCTTAAAATCC+AGG | - | chr1.2:80407754-80407773 | MS.gene92982:CDS | 35.0% | |
| GAAGTTGAACAATGCTCAAT+TGG | - | chr1.2:80409046-80409065 | MS.gene92982:intron | 35.0% | |
| GATGCAAACAATGTGAAGAA+AGG | - | chr1.2:80408903-80408922 | MS.gene92982:intron | 35.0% | |
| GTCAAAGATGACAAGAACAA+AGG | - | chr1.2:80408699-80408718 | MS.gene92982:CDS | 35.0% | |
| GTTCTGCATCTATTTGAACT+TGG | + | chr1.2:80408542-80408561 | None:intergenic | 35.0% | |
| TAATAATAGCCAGTGTTAGG+AGG | + | chr1.2:80409407-80409426 | None:intergenic | 35.0% | |
| TGAATATGATGAGGAAGAAG+AGG | - | chr1.2:80408812-80408831 | MS.gene92982:intron | 35.0% | |
| TGCATGTTCATCAATGAAGA+TGG | + | chr1.2:80409326-80409345 | None:intergenic | 35.0% | |
| TGGAAAGCTTAGGCTATAAA+AGG | - | chr1.2:80408348-80408367 | MS.gene92982:CDS | 35.0% | |
| TTACATTATTGAACAGCTGC+TGG | + | chr1.2:80409531-80409550 | None:intergenic | 35.0% | |
| ! | TTTGCATAGGAGTAATTTGC+AGG | + | chr1.2:80409449-80409468 | None:intergenic | 35.0% |
| !! | AAAAACAAGGACTGGTCAAA+GGG | - | chr1.2:80408724-80408743 | MS.gene92982:CDS | 35.0% |
| !! | AACTGTTTTGTTGCAACAAG+TGG | - | chr1.2:80408294-80408313 | MS.gene92982:CDS | 35.0% |
| !! | TTATGAAGGAAGGTGCTAAT+GGG | - | chr1.2:80408997-80409016 | MS.gene92982:intron | 35.0% |
| !!! | AAAGAGGTACCTGGATTTTA+AGG | + | chr1.2:80407766-80407785 | None:intergenic | 35.0% |
| AAGATGAACAATGCTGGCAA+TGG | - | chr1.2:80408936-80408955 | MS.gene92982:intron | 40.0% | |
| AATAGATGCAGAACAGCAGA+AGG | - | chr1.2:80408548-80408567 | MS.gene92982:intron | 40.0% | |
| AATGCTGGCAATGGAAATAG+TGG | - | chr1.2:80408945-80408964 | MS.gene92982:intron | 40.0% | |
| ACTGCATCTATTCCAAATGG+TGG | - | chr1.2:80409239-80409258 | MS.gene92982:intron | 40.0% | |
| AGGAAAACCTCCTAAACCAT+TGG | + | chr1.2:80409210-80409229 | None:intergenic | 40.0% | |
| AGGAAACCCAAATCAGAACA+TGG | - | chr1.2:80408974-80408993 | MS.gene92982:intron | 40.0% | |
| AGTGACCTTCAATTCTCTGA+AGG | + | chr1.2:80408016-80408035 | None:intergenic | 40.0% | |
| ATATGATGAGGAAGAAGAGG+AGG | - | chr1.2:80408815-80408834 | MS.gene92982:intron | 40.0% | |
| CAAAGGACAAAAACAAGGAC+TGG | - | chr1.2:80408716-80408735 | MS.gene92982:CDS | 40.0% | |
| CAACCTTGGAGAATCCAAAA+GGG | - | chr1.2:80409094-80409113 | MS.gene92982:intron | 40.0% | |
| CAGAACATGGTTATGAAGGA+AGG | - | chr1.2:80408987-80409006 | MS.gene92982:intron | 40.0% | |
| CCAGTAACAAAACCACCATT+TGG | + | chr1.2:80409254-80409273 | None:intergenic | 40.0% | |
| GGAAATTCCAATGGTTTAGG+AGG | - | chr1.2:80409200-80409219 | MS.gene92982:intron | 40.0% | |
| GGTAATGAAAGTCTCAACCT+TGG | - | chr1.2:80409080-80409099 | MS.gene92982:intron | 40.0% | |
| GGTGGAAATTCCAATGGTTT+AGG | - | chr1.2:80409197-80409216 | MS.gene92982:intron | 40.0% | |
| TCAACCTTGGAGAATCCAAA+AGG | - | chr1.2:80409093-80409112 | MS.gene92982:intron | 40.0% | |
| TCCACTGCATCTATTCCAAA+TGG | - | chr1.2:80409236-80409255 | MS.gene92982:intron | 40.0% | |
| TGCAAATGCTTGTCATCCAA+CGG | - | chr1.2:80409463-80409482 | MS.gene92982:intron | 40.0% | |
| TGGATGACAAGCATTTGCAT+AGG | + | chr1.2:80409462-80409481 | None:intergenic | 40.0% | |
| TGGGATTGAGCAGAAAACAA+TGG | - | chr1.2:80409016-80409035 | MS.gene92982:intron | 40.0% | |
| ! | ACCATTTGGAATAGATGCAG+TGG | + | chr1.2:80409240-80409259 | None:intergenic | 40.0% |
| ! | GGTGCTATGATGAATTTAGC+TGG | - | chr1.2:80409128-80409147 | MS.gene92982:intron | 40.0% |
| ! | GTTCTAGGTGGAAATTCCAA+TGG | - | chr1.2:80409191-80409210 | MS.gene92982:intron | 40.0% |
| !! | CAAAAACAAGGACTGGTCAA+AGG | - | chr1.2:80408723-80408742 | MS.gene92982:CDS | 40.0% |
| !! | GTTATGAAGGAAGGTGCTAA+TGG | - | chr1.2:80408996-80409015 | MS.gene92982:intron | 40.0% |
| !!! | CCAAATGGTGGTTTTGTTAC+TGG | - | chr1.2:80409251-80409270 | MS.gene92982:intron | 40.0% |
| AAATGCTTGTCATCCAACGG+AGG | - | chr1.2:80409466-80409485 | MS.gene92982:intron | 45.0% | |
| AGCCTCAGATGATGTATCAC+AGG | - | chr1.2:80409369-80409388 | MS.gene92982:intron | 45.0% | |
| ATGAAGAGATGCGGTTCATC+AGG | - | chr1.2:80408841-80408860 | MS.gene92982:intron | 45.0% | |
| CAGCAGAAGGTAACAGTTTC+AGG | - | chr1.2:80408561-80408580 | MS.gene92982:intron | 45.0% | |
| CCAGTGTTAGGAGGAACAAA+AGG | + | chr1.2:80409398-80409417 | None:intergenic | 45.0% | |
| CTGGAAAATATGCTGAGCTC+TGG | - | chr1.2:80408625-80408644 | MS.gene92982:intron | 45.0% | |
| GACCTGTGATACATCATCTG+AGG | + | chr1.2:80409374-80409393 | None:intergenic | 45.0% | |
| GGGAACAATAACAATGGTGC+TGG | - | chr1.2:80409158-80409177 | MS.gene92982:intron | 45.0% | |
| TCCTCTTCGGAACTAAAAGC+CGG | + | chr1.2:80408780-80408799 | None:intergenic | 45.0% | |
| TGAAGAGATGCGGTTCATCA+GGG | - | chr1.2:80408842-80408861 | MS.gene92982:intron | 45.0% | |
| ! | CAATGCTCAATTGGCTCAGT+TGG | - | chr1.2:80409055-80409074 | MS.gene92982:intron | 45.0% |
| ! | CCTTTTGTTCCTCCTAACAC+TGG | - | chr1.2:80409395-80409414 | MS.gene92982:intron | 45.0% |
| ! | GGTAACAGTTTCAGGTAGTG+TGG | - | chr1.2:80408569-80408588 | MS.gene92982:intron | 45.0% |
| !!! | AAGATATTTTAAAAAAAAAA+AGG | + | chr1.2:80408394-80408413 | None:intergenic | 5.0% |
| AGGAGGAGGATGAAGAGATG+CGG | - | chr1.2:80408832-80408851 | MS.gene92982:intron | 50.0% | |
| ATAGATGCAGTGGATCCTGC+AGG | + | chr1.2:80409230-80409249 | None:intergenic | 50.0% | |
| TCCAAAAGGGCGAGTGACAT+TGG | - | chr1.2:80409107-80409126 | MS.gene92982:intron | 50.0% | |
| TGATGAGGAAGAAGAGGAGG+AGG | - | chr1.2:80408818-80408837 | MS.gene92982:intron | 50.0% | |
| ! | ACCAATGTCACTCGCCCTTT+TGG | + | chr1.2:80409111-80409130 | None:intergenic | 50.0% |
| ! | GCTCAATTGGCTCAGTTGGT+TGG | - | chr1.2:80409059-80409078 | MS.gene92982:intron | 50.0% |
| ! | GCTGGTAGTGCTACTGTTCT+AGG | - | chr1.2:80409176-80409195 | MS.gene92982:intron | 50.0% |
| ! | GGTAGTGCTACTGTTCTAGG+TGG | - | chr1.2:80409179-80409198 | MS.gene92982:intron | 50.0% |
| ! | GGTTTAGGAGGTTTTCCTGC+AGG | - | chr1.2:80409212-80409231 | MS.gene92982:intron | 50.0% |
| ! | TCGCCCTTTTGGATTCTCCA+AGG | + | chr1.2:80409100-80409119 | None:intergenic | 50.0% |
| !! | TAAGGGGAGAAAGAGGTACC+TGG | + | chr1.2:80407775-80407794 | None:intergenic | 50.0% |
| !!! | TCCGGCTTTTAGTTCCGAAG+AGG | - | chr1.2:80408776-80408795 | MS.gene92982:intron | 50.0% |
| GCTGCAGAGTGATCCTCCGT+TGG | + | chr1.2:80409482-80409501 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 80407737 | 80409550 | 80407737 | ID=MS.gene92982 |
| chr1.2 | mRNA | 80407737 | 80409550 | 80407737 | ID=MS.gene92982.t1;Parent=MS.gene92982 |
| chr1.2 | exon | 80409512 | 80409550 | 80409512 | ID=MS.gene92982.t1.exon1;Parent=MS.gene92982.t1 |
| chr1.2 | CDS | 80409512 | 80409550 | 80409512 | ID=cds.MS.gene92982.t1;Parent=MS.gene92982.t1 |
| chr1.2 | exon | 80409258 | 80409333 | 80409258 | ID=MS.gene92982.t1.exon2;Parent=MS.gene92982.t1 |
| chr1.2 | CDS | 80409258 | 80409333 | 80409258 | ID=cds.MS.gene92982.t1;Parent=MS.gene92982.t1 |
| chr1.2 | exon | 80408641 | 80408755 | 80408641 | ID=MS.gene92982.t1.exon3;Parent=MS.gene92982.t1 |
| chr1.2 | CDS | 80408641 | 80408755 | 80408641 | ID=cds.MS.gene92982.t1;Parent=MS.gene92982.t1 |
| chr1.2 | exon | 80407737 | 80408424 | 80407737 | ID=MS.gene92982.t1.exon4;Parent=MS.gene92982.t1 |
| chr1.2 | CDS | 80407737 | 80408424 | 80407737 | ID=cds.MS.gene92982.t1;Parent=MS.gene92982.t1 |
| Gene Sequence |
| Protein sequence |
