Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93912.t1 | XP_013455261.1 | 99 | 512 | 5 | 0 | 1 | 512 | 107 | 618 | 4.40E-290 | 1006.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93912.t1 | Q291H5 | 55.8 | 373 | 156 | 2 | 5 | 370 | 130 | 500 | 1.7e-117 | 424.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93912.t1 | A0A072UHZ4 | 99.0 | 512 | 5 | 0 | 1 | 512 | 107 | 618 | 3.2e-290 | 1006.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049824 | MS.gene93912 | 0.809043 | 2.30E-50 | -1.69E-46 |
| MS.gene05462 | MS.gene93912 | 0.800759 | 1.24E-48 | -1.69E-46 |
| MS.gene057057 | MS.gene93912 | 0.802149 | 6.43E-49 | -1.69E-46 |
| MS.gene05978 | MS.gene93912 | 0.812298 | 4.55E-51 | -1.69E-46 |
| MS.gene060587 | MS.gene93912 | 0.815157 | 1.07E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene85146 | MS.gene93912 | PPI |
| MS.gene85145 | MS.gene93912 | PPI |
| MS.gene93912 | MS.gene025347 | PPI |
| MS.gene93912 | MS.gene062116 | PPI |
| MS.gene36347 | MS.gene93912 | PPI |
| MS.gene93912 | MS.gene85342 | PPI |
| MS.gene93912 | MS.gene070139 | PPI |
| MS.gene93912 | MS.gene76530 | PPI |
| MS.gene93912 | MS.gene069865 | PPI |
| MS.gene36348 | MS.gene93912 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93912.t1 | MTR_4g033210 | 99.023 | 512 | 5 | 0 | 1 | 512 | 107 | 618 | 0.0 | 1046 |
| MS.gene93912.t1 | MTR_5g021230 | 24.939 | 413 | 240 | 12 | 15 | 369 | 186 | 586 | 1.29e-26 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93912.t1 | AT1G72090 | 67.647 | 510 | 135 | 5 | 1 | 509 | 119 | 599 | 0.0 | 701 |
| MS.gene93912.t1 | AT4G36390 | 24.823 | 423 | 246 | 14 | 7 | 369 | 207 | 617 | 2.76e-25 | 110 |
Find 0 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATATTCCATTAATATT+AGG | + | 33274:4996-5015 | MS.gene93912:intron | 10.0% |
| !! | ATATTAATGAAAAAATGAAT+AGG | + | 33274:4763-4782 | MS.gene93912:intron | 10.0% |
| !! | ATTAAATAACATAATACATA+TGG | - | 33274:2289-2308 | None:intergenic | 10.0% |
| !! | TATTAATGAAAAAATGAATA+GGG | + | 33274:4764-4783 | MS.gene93912:intron | 10.0% |
| !!! | ATAAACATTTTTCTAATTTT+TGG | + | 33274:4219-4238 | MS.gene93912:intron | 10.0% |
| !!! | TTGTTTTTTGTTTTTTTTTT+TGG | + | 33274:3927-3946 | MS.gene93912:intron | 10.0% |
| !! | TAATATAATGCATTCATTTA+TGG | + | 33274:5541-5560 | MS.gene93912:intron | 15.0% |
| !!! | AAATCATAACTTCATTTTTT+AGG | + | 33274:3808-3827 | MS.gene93912:intron | 15.0% |
| !!! | ATTTTTTTTCTTGCAATAAA+AGG | + | 33274:3972-3991 | MS.gene93912:intron | 15.0% |
| !!! | CAAAATAACAAAAATTTGTT+TGG | + | 33274:5931-5950 | MS.gene93912:CDS | 15.0% |
| !!! | CTTGTCATTTATTATTATAT+TGG | - | 33274:3473-3492 | None:intergenic | 15.0% |
| !!! | TTTTATTGCAAGAAAAAAAA+TGG | - | 33274:3973-3992 | None:intergenic | 15.0% |
| !!! | TTTTTGTTTTTTTTTTTGGA+AGG | + | 33274:3931-3950 | MS.gene93912:intron | 15.0% |
| !!! | TTTTTTTTCTTGCAATAAAA+GGG | + | 33274:3973-3992 | MS.gene93912:intron | 15.0% |
| !! | AAAGTTTAGAAACAAATAAC+TGG | - | 33274:5151-5170 | None:intergenic | 20.0% |
| !! | AACTGATGAAATCTTATAAT+TGG | + | 33274:3495-3514 | MS.gene93912:intron | 20.0% |
| !! | ACTGATGAAATCTTATAATT+GGG | + | 33274:3496-3515 | MS.gene93912:intron | 20.0% |
| !! | ATGTATGAACAAAATATCTA+CGG | + | 33274:5330-5349 | MS.gene93912:intron | 20.0% |
| !! | ATTGATATAGATAATCTAGA+TGG | + | 33274:3609-3628 | MS.gene93912:intron | 20.0% |
| !! | CATATGGTAATTTCTAATAT+TGG | + | 33274:2730-2749 | MS.gene93912:intron | 20.0% |
| !! | GTTGTATCATTAACAAAAAA+AGG | - | 33274:4269-4288 | None:intergenic | 20.0% |
| !! | TTAATTCTATGTGTAACAAA+TGG | + | 33274:3355-3374 | MS.gene93912:intron | 20.0% |
| !!! | ATAACAAAAATTTGTTTGGA+TGG | + | 33274:5935-5954 | MS.gene93912:CDS | 20.0% |
| !!! | TATGATAGTATTTTTTAGTC+AGG | - | 33274:4202-4221 | None:intergenic | 20.0% |
| !!! | TTTTTGTTATTTTGATTCTG+TGG | - | 33274:5925-5944 | None:intergenic | 20.0% |
| ! | AAATCCACATATTATATCAG+TGG | - | 33274:3292-3311 | None:intergenic | 25.0% |
| ! | ATATTGTCAGTTTGAAGATA+AGG | - | 33274:4747-4766 | None:intergenic | 25.0% |
| ! | ATCACATGATTAAAATGATC+TGG | + | 33274:3585-3604 | MS.gene93912:intron | 25.0% |
| ! | CTGATGAAATCTTATAATTG+GGG | + | 33274:3497-3516 | MS.gene93912:intron | 25.0% |
| ! | GTAGATATTGAATCATGATT+TGG | + | 33274:4959-4978 | MS.gene93912:intron | 25.0% |
| ! | TATTAATTCATCACTAATGC+AGG | + | 33274:2638-2657 | MS.gene93912:intron | 25.0% |
| ! | TCCATTAATATTAGGATTTG+TGG | + | 33274:5004-5023 | MS.gene93912:intron | 25.0% |
| ! | TGTTACACATAGAATTAAGA+AGG | - | 33274:3353-3372 | None:intergenic | 25.0% |
| ! | TTAGTAACTATTCAAAAGGA+AGG | - | 33274:4143-4162 | None:intergenic | 25.0% |
| ! | TTTGTTCAAATAATTGCCAT+CGG | + | 33274:4414-4433 | MS.gene93912:intron | 25.0% |
| !! | ACAGTATTTGAGACTTTAAT+TGG | + | 33274:5206-5225 | MS.gene93912:intron | 25.0% |
| !! | AGAACTTGTATTCTTTTATG+AGG | - | 33274:3723-3742 | None:intergenic | 25.0% |
| !! | ATTTTCCATACAAAATGAAC+AGG | - | 33274:2256-2275 | None:intergenic | 25.0% |
| !! | TAATTCCTGTTCATTTTGTA+TGG | + | 33274:2248-2267 | MS.gene93912:intron | 25.0% |
| !! | TATTTGAGACTTTAATTGGT+TGG | + | 33274:5210-5229 | MS.gene93912:intron | 25.0% |
| !! | TATTTTGTTCATACATCCAA+CGG | - | 33274:5326-5345 | None:intergenic | 25.0% |
| !!! | AATGTTTTGATGTTGAGTTT+AGG | + | 33274:2860-2879 | MS.gene93912:intron | 25.0% |
| !!! | AATTTTTTCTTCAATGCTGA+AGG | + | 33274:5579-5598 | MS.gene93912:intron | 25.0% |
| !!! | AGATTTTCCTTTTGTTATGA+TGG | - | 33274:2019-2038 | None:intergenic | 25.0% |
| !!! | GAGTTTAGGTTTTATATCAA+TGG | + | 33274:2874-2893 | MS.gene93912:intron | 25.0% |
| !!! | TCATACTAACAGTTATTTCT+TGG | + | 33274:3653-3672 | MS.gene93912:intron | 25.0% |
| !!! | TTGCTTTATTAGTTTGTCTT+AGG | + | 33274:6106-6125 | MS.gene93912:CDS | 25.0% |
| !!! | TTTTTTTGGAAGGAAGATTT+AGG | + | 33274:3941-3960 | MS.gene93912:intron | 25.0% |
| AAGCTACTATGATAGTTTAG+AGG | + | 33274:3851-3870 | MS.gene93912:intron | 30.0% | |
| AATGAATCGAGAATATACTG+TGG | + | 33274:3209-3228 | MS.gene93912:CDS | 30.0% | |
| ATGAATCGAGAATATACTGT+GGG | + | 33274:3210-3229 | MS.gene93912:CDS | 30.0% | |
| ATGGATACCATCATAACAAA+AGG | + | 33274:2009-2028 | MS.gene93912:CDS | 30.0% | |
| ATGTATATGCACTAGTCAAA+AGG | - | 33274:2819-2838 | None:intergenic | 30.0% | |
| ATTACTGATATTGCAACTGA+TGG | + | 33274:4913-4932 | MS.gene93912:CDS | 30.0% | |
| ATTGCCACTGATATAATATG+TGG | + | 33274:3285-3304 | MS.gene93912:CDS | 30.0% | |
| CAAAGACATTTGTCAATTCA+CGG | - | 33274:4843-4862 | None:intergenic | 30.0% | |
| CAAGTTTGAATTCATACCTT+TGG | - | 33274:2225-2244 | None:intergenic | 30.0% | |
| CCACTTAGTAACTATTCAAA+AGG | - | 33274:4147-4166 | None:intergenic | 30.0% | |
| CCTAAACAACCAACATTAAT+TGG | - | 33274:2384-2403 | None:intergenic | 30.0% | |
| CTCTTGAATTTGTGAATAAG+AGG | + | 33274:3392-3411 | MS.gene93912:intron | 30.0% | |
| CTGATGGAGTTAAAGAAATA+TGG | + | 33274:2685-2704 | MS.gene93912:CDS | 30.0% | |
| GAAAAACCCTTACAATACTA+TGG | + | 33274:3139-3158 | MS.gene93912:intron | 30.0% | |
| GAGATTCTTCCAATTAATGT+TGG | + | 33274:2372-2391 | MS.gene93912:CDS | 30.0% | |
| GATATAATATGTGGATTTCC+AGG | + | 33274:3294-3313 | MS.gene93912:CDS | 30.0% | |
| GCCACAAATCCTAATATTAA+TGG | - | 33274:5008-5027 | None:intergenic | 30.0% | |
| GGGTTTCAACAAAATAATCA+CGG | - | 33274:5033-5052 | None:intergenic | 30.0% | |
| GTGATGAATTAATAGATGTG+AGG | - | 33274:2632-2651 | None:intergenic | 30.0% | |
| TAACTATTCAAAAGGAAGGA+TGG | - | 33274:4139-4158 | None:intergenic | 30.0% | |
| TCTTATTCGTAAGCTATTTG+AGG | + | 33274:4527-4546 | MS.gene93912:intron | 30.0% | |
| TGCCTAATATTAAGTCATGT+CGG | - | 33274:4022-4041 | None:intergenic | 30.0% | |
| TGTATATGCACTAGTCAAAA+GGG | - | 33274:2818-2837 | None:intergenic | 30.0% | |
| TGTTGAGAAAAAAGAAAGAG+AGG | + | 33274:5414-5433 | MS.gene93912:intron | 30.0% | |
| TTAGAAATTACCATATGCTC+CGG | - | 33274:2727-2746 | None:intergenic | 30.0% | |
| TTGTTCAAATAATTGCCATC+GGG | + | 33274:4415-4434 | MS.gene93912:intron | 30.0% | |
| TTTGAATTCATACCTTTGGA+AGG | - | 33274:2221-2240 | None:intergenic | 30.0% | |
| ! | ACTAAGGCATTCAATAAAGT+TGG | - | 33274:2948-2967 | None:intergenic | 30.0% |
| ! | AGTTTGCTCAAAATCTTCAT+CGG | - | 33274:3695-3714 | None:intergenic | 30.0% |
| ! | CCAATTAATGTTGGTTGTTT+AGG | + | 33274:2381-2400 | MS.gene93912:CDS | 30.0% |
| ! | CCTTTTGAATAGTTACTAAG+TGG | + | 33274:4144-4163 | MS.gene93912:intron | 30.0% |
| ! | CTTAGATCATGATGTTTTAC+AGG | + | 33274:2900-2919 | MS.gene93912:intron | 30.0% |
| ! | TCACTACTAAAGTACTTACA+AGG | - | 33274:2470-2489 | None:intergenic | 30.0% |
| ! | TTTTGCATAACCTAATTGCT+TGG | - | 33274:2842-2861 | None:intergenic | 30.0% |
| !! | AATTTGCTGTTCATATGCTA+AGG | + | 33274:4375-4394 | MS.gene93912:intron | 30.0% |
| !! | CAATAAAGCTTTGAACAAAC+AGG | + | 33274:5744-5763 | MS.gene93912:CDS | 30.0% |
| !! | GCTTACAATAAACTTTTTCC+TGG | - | 33274:5083-5102 | None:intergenic | 30.0% |
| !! | TTTGTTGATAAGGCTCTTTT+GGG | + | 33274:6054-6073 | MS.gene93912:CDS | 30.0% |
| !!! | CTTTCTTTTTTCTCAACAAG+AGG | - | 33274:5412-5431 | None:intergenic | 30.0% |
| !!! | TTATCATGCTTTTTTACCGT+TGG | + | 33274:5307-5326 | MS.gene93912:intron | 30.0% |
| AAAAACATTGTGCGACTATC+GGG | - | 33274:5180-5199 | None:intergenic | 35.0% | |
| AAAAGAAAGAGAGGTTGTGA+TGG | + | 33274:5423-5442 | MS.gene93912:intron | 35.0% | |
| AAAGAAAGAGAGGTTGTGAT+GGG | + | 33274:5424-5443 | MS.gene93912:intron | 35.0% | |
| AAAGGAAGAATCTGCACAAA+AGG | + | 33274:5968-5987 | MS.gene93912:CDS | 35.0% | |
| AAAGTGGGACTTTGTTGATA+AGG | + | 33274:6044-6063 | MS.gene93912:CDS | 35.0% | |
| AACCCTTACAATACTATGGA+TGG | + | 33274:3143-3162 | MS.gene93912:intron | 35.0% | |
| AAGGAAGAATCTGCACAAAA+GGG | + | 33274:5969-5988 | MS.gene93912:CDS | 35.0% | |
| AAGGCAAAGTGGAAAGAATT+TGG | + | 33274:4890-4909 | MS.gene93912:CDS | 35.0% | |
| AATAAACCACTAGTTGTTGC+TGG | + | 33274:2042-2061 | MS.gene93912:CDS | 35.0% | |
| AATGAATGCAAGATAACCTC+TGG | - | 33274:4712-4731 | None:intergenic | 35.0% | |
| AATTCATCACTAATGCAGGT+TGG | + | 33274:2642-2661 | MS.gene93912:intron | 35.0% | |
| ACAATAGCACCTAGAAAAAG+TGG | - | 33274:4078-4097 | None:intergenic | 35.0% | |
| ACTATGATAGTTTAGAGGCA+GGG | + | 33274:3856-3875 | MS.gene93912:intron | 35.0% | |
| AGATTTCACAAGTCTTGGTT+TGG | - | 33274:5804-5823 | None:intergenic | 35.0% | |
| ATAAGCATCTTACACAAAGG+GGG | - | 33274:4688-4707 | None:intergenic | 35.0% | |
| ATATTCTCGATTCATTGCCT+GGG | - | 33274:3205-3224 | None:intergenic | 35.0% | |
| ATTAAGACTATGCACTAACC+TGG | - | 33274:3315-3334 | None:intergenic | 35.0% | |
| ATTCATCACTAATGCAGGTT+GGG | + | 33274:2643-2662 | MS.gene93912:intron | 35.0% | |
| ATTTGTTTGGATGGATACTG+AGG | + | 33274:5944-5963 | MS.gene93912:CDS | 35.0% | |
| CACCATCCATAGTATTGTAA+GGG | - | 33274:3148-3167 | None:intergenic | 35.0% | |
| CACCGACATGACTTAATATT+AGG | + | 33274:4017-4036 | MS.gene93912:intron | 35.0% | |
| CATAAGCATCTTACACAAAG+GGG | - | 33274:4689-4708 | None:intergenic | 35.0% | |
| CTAATATTAAGTCATGTCGG+TGG | - | 33274:4019-4038 | None:intergenic | 35.0% | |
| GAAAAACATTGTGCGACTAT+CGG | - | 33274:5181-5200 | None:intergenic | 35.0% | |
| GAAAAAGGTTCCAAGTAATG+TGG | + | 33274:4804-4823 | MS.gene93912:CDS | 35.0% | |
| GCAGGTTCATGACAATTAAA+GGG | - | 33274:5053-5072 | None:intergenic | 35.0% | |
| GCATAAGCATCTTACACAAA+GGG | - | 33274:4690-4709 | None:intergenic | 35.0% | |
| GCATATACATCCAAGCAATT+AGG | + | 33274:2829-2848 | MS.gene93912:intron | 35.0% | |
| GGGTGCTCCAAATAAATTTA+AGG | + | 33274:3993-4012 | MS.gene93912:intron | 35.0% | |
| GTAAAATCTGTGGTATCTGA+TGG | + | 33274:2669-2688 | MS.gene93912:CDS | 35.0% | |
| GTCTTAGGTTTAGTGTTCTT+TGG | + | 33274:6121-6140 | MS.gene93912:CDS | 35.0% | |
| GTTGTAGAGGAGACTTTAAA+AGG | + | 33274:2150-2169 | MS.gene93912:CDS | 35.0% | |
| TACTATGATAGTTTAGAGGC+AGG | + | 33274:3855-3874 | MS.gene93912:intron | 35.0% | |
| TATATTCTCGATTCATTGCC+TGG | - | 33274:3206-3225 | None:intergenic | 35.0% | |
| TATCTATTGTGTAACTCCCT+AGG | - | 33274:2446-2465 | None:intergenic | 35.0% | |
| TCACCATCCATAGTATTGTA+AGG | - | 33274:3149-3168 | None:intergenic | 35.0% | |
| TGCAAAAAGGAGTAAACACA+TGG | - | 33274:3074-3093 | None:intergenic | 35.0% | |
| TTAATATTCACTACCTCCCA+TGG | + | 33274:5378-5397 | MS.gene93912:intron | 35.0% | |
| TTCAAGTGCTCAAGGATAAA+AGG | - | 33274:3026-3045 | None:intergenic | 35.0% | |
| TTCTTTCTCACCTGTTACAA+AGG | - | 33274:2342-2361 | None:intergenic | 35.0% | |
| TTGTAAGTGTACTCAAACAC+TGG | + | 33274:4599-4618 | MS.gene93912:intron | 35.0% | |
| ! | AAGAGATAGCAGAGGTTTTA+CGG | + | 33274:3045-3064 | MS.gene93912:CDS | 35.0% |
| ! | GATCTGATCTAAAGCAAGAA+AGG | + | 33274:6013-6032 | MS.gene93912:CDS | 35.0% |
| ! | TCGGTGGCCTTAAATTTATT+TGG | - | 33274:4003-4022 | None:intergenic | 35.0% |
| ! | TTTTCTTCAATGCTGAAGGT+TGG | + | 33274:5583-5602 | MS.gene93912:intron | 35.0% |
| !! | CTTTGTTGATAAGGCTCTTT+TGG | + | 33274:6053-6072 | MS.gene93912:CDS | 35.0% |
| !! | GCCTACTCACTTGTTATAAA+GGG | + | 33274:4100-4119 | MS.gene93912:intron | 35.0% |
| !! | TAAACTTTTTCCTGGCACTT+AGG | - | 33274:5075-5094 | None:intergenic | 35.0% |
| !! | TGCCTACTCACTTGTTATAA+AGG | + | 33274:4099-4118 | MS.gene93912:intron | 35.0% |
| !! | TTCTGAGATTTCACAAGTCT+TGG | - | 33274:5809-5828 | None:intergenic | 35.0% |
| !!! | CTTTCAGTTCCACTTTTTCT+AGG | + | 33274:4066-4085 | MS.gene93912:intron | 35.0% |
| !!! | GTTATTTCTTGGCCTTTTTC+AGG | + | 33274:3664-3683 | MS.gene93912:intron | 35.0% |
| !!! | TTTTAGGATGAAACTGATGC+AGG | + | 33274:3824-3843 | MS.gene93912:intron | 35.0% |
| AAAATGAATAGGGACACCTG+CGG | + | 33274:4774-4793 | MS.gene93912:intron | 40.0% | |
| AAGTGCTCAAGGATAAAAGG+TGG | - | 33274:3023-3042 | None:intergenic | 40.0% | |
| AATCATTCACGCCATACTCT+GGG | + | 33274:4863-4882 | MS.gene93912:CDS | 40.0% | |
| ACAGTCACTCACCAAATAGA+GGG | - | 33274:5476-5495 | None:intergenic | 40.0% | |
| ACCTAAGATAGCGAGATTAG+GGG | - | 33274:4316-4335 | None:intergenic | 40.0% | |
| AGAAGTCACATGTTCAGAGT+AGG | - | 33274:5518-5537 | None:intergenic | 40.0% | |
| AGAGAAGACATATCCTGAGT+AGG | - | 33274:5772-5791 | None:intergenic | 40.0% | |
| AGCTGGTAATTCTGCTACTA+AGG | - | 33274:2964-2983 | None:intergenic | 40.0% | |
| ATTGCCTGGGATATTCAGAT+TGG | - | 33274:3192-3211 | None:intergenic | 40.0% | |
| ATTGCTCCAGATGATATGCT+TGG | + | 33274:5637-5656 | MS.gene93912:CDS | 40.0% | |
| CACCTAAGATAGCGAGATTA+GGG | - | 33274:4317-4336 | None:intergenic | 40.0% | |
| CACCTGTTACAAAGGTTGAA+AGG | - | 33274:2334-2353 | None:intergenic | 40.0% | |
| CAGACCATCCAAATTCTATC+GGG | - | 33274:4448-4467 | None:intergenic | 40.0% | |
| CCAGACCATCCAAATTCTAT+CGG | - | 33274:4449-4468 | None:intergenic | 40.0% | |
| CTCAAGGATAAAAGGTGGAT+TGG | - | 33274:3018-3037 | None:intergenic | 40.0% | |
| CTTCTCTTCACCACATTACT+TGG | - | 33274:4817-4836 | None:intergenic | 40.0% | |
| GAACTTCCAAGCATATCATC+TGG | - | 33274:5646-5665 | None:intergenic | 40.0% | |
| GAGATTAGGGGAGGAAAAAA+AGG | - | 33274:4304-4323 | None:intergenic | 40.0% | |
| GCCCTTTATAACAAGTGAGT+AGG | - | 33274:4104-4123 | None:intergenic | 40.0% | |
| GGCAGGTTCATGACAATTAA+AGG | - | 33274:5054-5073 | None:intergenic | 40.0% | |
| GGCATAAGCATCTTACACAA+AGG | - | 33274:4691-4710 | None:intergenic | 40.0% | |
| TACAGTGTCCCTTGAATTGT+CGG | - | 33274:5896-5915 | None:intergenic | 40.0% | |
| TACTCTGAACATGTGACTTC+TGG | + | 33274:5517-5536 | MS.gene93912:intron | 40.0% | |
| TCACATGTGTGTGATATGTG+AGG | - | 33274:2594-2613 | None:intergenic | 40.0% | |
| TCACCTAAGATAGCGAGATT+AGG | - | 33274:4318-4337 | None:intergenic | 40.0% | |
| TGAGAAGACCGACAATTCAA+GGG | + | 33274:5885-5904 | MS.gene93912:CDS | 40.0% | |
| TGCCTTTCAACCTTTGTAAC+AGG | + | 33274:2329-2348 | MS.gene93912:intron | 40.0% | |
| TTGACCAATCTGAATATCCC+AGG | + | 33274:3185-3204 | MS.gene93912:intron | 40.0% | |
| TTGAGAAGACCGACAATTCA+AGG | + | 33274:5884-5903 | MS.gene93912:CDS | 40.0% | |
| TTGGATGGATACTGAGGAAA+AGG | + | 33274:5950-5969 | MS.gene93912:CDS | 40.0% | |
| ! | AAGAAAGGAGCATGAGAAAG+TGG | + | 33274:6028-6047 | MS.gene93912:CDS | 40.0% |
| ! | AGAAAGGAGCATGAGAAAGT+GGG | + | 33274:6029-6048 | MS.gene93912:CDS | 40.0% |
| ! | CTATCTCTTTCAAGTGCTCA+AGG | - | 33274:3034-3053 | None:intergenic | 40.0% |
| ! | CTGAAGGTTGGTCATACAAA+GGG | + | 33274:5595-5614 | MS.gene93912:intron | 40.0% |
| ! | CTTTAAAAGGTCACGAAGTG+AGG | + | 33274:2163-2182 | MS.gene93912:CDS | 40.0% |
| ! | TCACAATTTTATCCTCGACC+AGG | + | 33274:3757-3776 | MS.gene93912:CDS | 40.0% |
| ! | TGTTTTACAGGTCGTGACAT+TGG | + | 33274:2912-2931 | MS.gene93912:intron | 40.0% |
| !! | TCATCGGTTTCACCTGAAAA+AGG | - | 33274:3679-3698 | None:intergenic | 40.0% |
| AAGGCCCGATAGAATTTGGA+TGG | + | 33274:4441-4460 | MS.gene93912:intron | 45.0% | |
| AAGTCGAGATGTGAAAGAGC+TGG | + | 33274:2080-2099 | MS.gene93912:CDS | 45.0% | |
| AATAATTGCCATCGGGCCAA+AGG | + | 33274:4422-4441 | MS.gene93912:intron | 45.0% | |
| ACCAAATAGAGGGTGGTGTA+GGG | - | 33274:5466-5485 | None:intergenic | 45.0% | |
| ACCTGCGGCAAGAATGAAAA+AGG | + | 33274:4789-4808 | MS.gene93912:CDS | 45.0% | |
| AGATAACATCTGTGGGAAGG+TGG | + | 33274:5677-5696 | MS.gene93912:CDS | 45.0% | |
| AGCCAGAATCTTGTGCTTGT+GGG | + | 33274:5830-5849 | MS.gene93912:CDS | 45.0% | |
| AGTGAAGATACCGGAGCATA+TGG | + | 33274:2714-2733 | MS.gene93912:CDS | 45.0% | |
| CAACAACGCGATCAATTTGC+TGG | - | 33274:2128-2147 | None:intergenic | 45.0% | |
| CACAGTCACTCACCAAATAG+AGG | - | 33274:5477-5496 | None:intergenic | 45.0% | |
| CCAAGATAACATCTGTGGGA+AGG | + | 33274:5674-5693 | MS.gene93912:CDS | 45.0% | |
| CCGATAGAATTTGGATGGTC+TGG | + | 33274:4446-4465 | MS.gene93912:intron | 45.0% | |
| CCTCACATTTCACACACATG+CGG | + | 33274:2553-2572 | MS.gene93912:intron | 45.0% | |
| CCTTCCCACAGATGTTATCT+TGG | - | 33274:5677-5696 | None:intergenic | 45.0% | |
| CTCACATTTCACACACATGC+GGG | + | 33274:2554-2573 | MS.gene93912:intron | 45.0% | |
| CTGAACTGGCACATGCAAAA+AGG | - | 33274:3087-3106 | None:intergenic | 45.0% | |
| CTGATGGAGTTCACTTGGTA+AGG | + | 33274:4929-4948 | MS.gene93912:intron | 45.0% | |
| CTGGCCAAGATAACATCTGT+GGG | + | 33274:5670-5689 | MS.gene93912:CDS | 45.0% | |
| GAACAAACAGGTTCCTACTC+AGG | + | 33274:5756-5775 | MS.gene93912:CDS | 45.0% | |
| GAATCATTCACGCCATACTC+TGG | + | 33274:4862-4881 | MS.gene93912:CDS | 45.0% | |
| GAGATGTGAAAGAGCTGGAA+GGG | + | 33274:2085-2104 | MS.gene93912:CDS | 45.0% | |
| GCACTTGAAAGAGATAGCAG+AGG | + | 33274:3037-3056 | MS.gene93912:CDS | 45.0% | |
| GTGCGCAAATTTGTGCAAGA+GGG | - | 33274:2520-2539 | None:intergenic | 45.0% | |
| GTGTAAGATGCTTATGCCAG+AGG | + | 33274:4693-4712 | MS.gene93912:intron | 45.0% | |
| GTTCTCCAATAGCATAGCCA+TGG | + | 33274:5237-5256 | MS.gene93912:intron | 45.0% | |
| TAAGATAGCGAGATTAGGGG+AGG | - | 33274:4313-4332 | None:intergenic | 45.0% | |
| TACCTTAACTGAGCTTGTGC+CGG | + | 33274:3254-3273 | MS.gene93912:CDS | 45.0% | |
| TATGCTTGGAAGTTCAGCTC+TGG | + | 33274:5651-5670 | MS.gene93912:CDS | 45.0% | |
| TCACATCTCGACTTCCTTGA+GGG | - | 33274:2074-2093 | None:intergenic | 45.0% | |
| TCCAAATTCTATCGGGCCTT+TGG | - | 33274:4441-4460 | None:intergenic | 45.0% | |
| TCCCCTAATCTCGCTATCTT+AGG | + | 33274:4312-4331 | MS.gene93912:intron | 45.0% | |
| TCGCGTTGTTGAAGTTGTAG+AGG | + | 33274:2137-2156 | MS.gene93912:CDS | 45.0% | |
| TCTGGCCAAGATAACATCTG+TGG | + | 33274:5669-5688 | MS.gene93912:CDS | 45.0% | |
| TGCAACTGATGGAGTTCACT+TGG | + | 33274:4924-4943 | MS.gene93912:CDS | 45.0% | |
| TGCAAGACAAAACATGCTCG+AGG | + | 33274:2417-2436 | MS.gene93912:CDS | 45.0% | |
| TGTGCGCAAATTTGTGCAAG+AGG | - | 33274:2521-2540 | None:intergenic | 45.0% | |
| TGTTCATGCACAGAACCTAG+TGG | - | 33274:3892-3911 | None:intergenic | 45.0% | |
| TTCACATCTCGACTTCCTTG+AGG | - | 33274:2075-2094 | None:intergenic | 45.0% | |
| TTCCCACAAGCACAAGATTC+TGG | - | 33274:5835-5854 | None:intergenic | 45.0% | |
| ! | AGTTTAGAGGCAGGGTATCT+TGG | + | 33274:3864-3883 | MS.gene93912:intron | 45.0% |
| ! | GCTGAAGGTTGGTCATACAA+AGG | + | 33274:5594-5613 | MS.gene93912:intron | 45.0% |
| ! | TGGGAAGGTGGTCAGTTTTT+GGG | + | 33274:5689-5708 | MS.gene93912:CDS | 45.0% |
| !! | ACCTTTTTCATTCTTGCCGC+AGG | - | 33274:4793-4812 | None:intergenic | 45.0% |
| !! | AGATTTTGACGCGCAGGTTA+AGG | + | 33274:5355-5374 | MS.gene93912:intron | 45.0% |
| !! | GTTGATAAGGCTCTTTTGGG+TGG | + | 33274:6057-6076 | MS.gene93912:CDS | 45.0% |
| !!! | TATGTTATTTAATTTAATTT+GGG | + | 33274:2296-2315 | MS.gene93912:intron | 5.0% |
| !!! | TTATGTTATTTAATTTAATT+TGG | + | 33274:2295-2314 | MS.gene93912:intron | 5.0% |
| AAACATGCTCGAGGTCACCT+AGG | + | 33274:2426-2445 | MS.gene93912:CDS | 50.0% | |
| AACATGCTCGAGGTCACCTA+GGG | + | 33274:2427-2446 | MS.gene93912:CDS | 50.0% | |
| ACACAGCCAGCAACAACTAG+TGG | - | 33274:2051-2070 | None:intergenic | 50.0% | |
| ACCTTAACTGAGCTTGTGCC+GGG | + | 33274:3255-3274 | MS.gene93912:CDS | 50.0% | |
| AGCATAGTGCTTGCATCAGC+TGG | - | 33274:2981-3000 | None:intergenic | 50.0% | |
| ATAGCATAGCCATGGTCTGG+AGG | + | 33274:5245-5264 | MS.gene93912:intron | 50.0% | |
| CACCAAATAGAGGGTGGTGT+AGG | - | 33274:5467-5486 | None:intergenic | 50.0% | |
| CCAATAGCATAGCCATGGTC+TGG | + | 33274:5242-5261 | MS.gene93912:intron | 50.0% | |
| CCAGACCATGGCTATGCTAT+TGG | - | 33274:5245-5264 | None:intergenic | 50.0% | |
| CCGCATGTGTGTGAAATGTG+AGG | - | 33274:2556-2575 | None:intergenic | 50.0% | |
| CGAGATGTGAAAGAGCTGGA+AGG | + | 33274:2084-2103 | MS.gene93912:CDS | 50.0% | |
| CTGGAAGGGATCAGCATTGT+AGG | + | 33274:2099-2118 | MS.gene93912:CDS | 50.0% | |
| GAGCCAGAATCTTGTGCTTG+TGG | + | 33274:5829-5848 | MS.gene93912:CDS | 50.0% | |
| GCAAGCACTATGCTGCGTAT+TGG | + | 33274:2987-3006 | MS.gene93912:CDS | 50.0% | |
| GCATCACTTCCAGACTGAAC+TGG | - | 33274:3101-3120 | None:intergenic | 50.0% | |
| GCCAAAGGCCCGATAGAATT+TGG | + | 33274:4437-4456 | MS.gene93912:intron | 50.0% | |
| GGTTGGGCGTGTAAAATCTG+TGG | + | 33274:2659-2678 | MS.gene93912:intron | 50.0% | |
| GTCACTCACCAAATAGAGGG+TGG | - | 33274:5473-5492 | None:intergenic | 50.0% | |
| TAGCATAGCCATGGTCTGGA+GGG | + | 33274:5246-5265 | MS.gene93912:intron | 50.0% | |
| TCCCTACACCACCCTCTATT+TGG | + | 33274:5462-5481 | MS.gene93912:intron | 50.0% | |
| TGGCTGAGCAGTGAAGATAC+CGG | + | 33274:2705-2724 | MS.gene93912:CDS | 50.0% | |
| TTGCATGTGCCAGTTCAGTC+TGG | + | 33274:3089-3108 | MS.gene93912:CDS | 50.0% | |
| TTGCCTTCCATCCCAGAGTA+TGG | - | 33274:4877-4896 | None:intergenic | 50.0% | |
| ! | ATTCACGCCATACTCTGGGA+TGG | + | 33274:4867-4886 | MS.gene93912:CDS | 50.0% |
| ! | CTTTTTCCTGGCACTTAGGC+AGG | - | 33274:5071-5090 | None:intergenic | 50.0% |
| ! | GAAAGAGAGGTTGTGATGGG+AGG | + | 33274:5427-5446 | MS.gene93912:intron | 50.0% |
| ! | GGGAAGGTGGTCAGTTTTTG+GGG | + | 33274:5690-5709 | MS.gene93912:CDS | 50.0% |
| ! | GTGGGAAGGTGGTCAGTTTT+TGG | + | 33274:5688-5707 | MS.gene93912:CDS | 50.0% |
| !! | AAGCGCTGGCAATGTCTTAC+GGG | - | 33274:2196-2215 | None:intergenic | 50.0% |
| !! | CAAGCGCTGGCAATGTCTTA+CGG | - | 33274:2197-2216 | None:intergenic | 50.0% |
| AACAAGAGGCCCTGAGACCA+TGG | - | 33274:5398-5417 | None:intergenic | 55.0% | |
| ACAAGAGGCCCTGAGACCAT+GGG | - | 33274:5397-5416 | None:intergenic | 55.0% | |
| CACTACCTCCCATGGTCTCA+GGG | + | 33274:5386-5405 | MS.gene93912:intron | 55.0% | |
| CATGAACCTGCCTAAGTGCC+AGG | + | 33274:5062-5081 | MS.gene93912:intron | 55.0% | |
| CCTTAACTGAGCTTGTGCCG+GGG | + | 33274:3256-3275 | MS.gene93912:CDS | 55.0% | |
| GATGTGCCAGATCACACACC+TGG | - | 33274:3778-3797 | None:intergenic | 55.0% | |
| TCACTACCTCCCATGGTCTC+AGG | + | 33274:5385-5404 | MS.gene93912:intron | 55.0% | |
| TCAGTGGCAATCTGCATCCC+CGG | - | 33274:3276-3295 | None:intergenic | 55.0% | |
| ! | ACCTTTGGAAGGTCAAGCGC+TGG | - | 33274:2210-2229 | None:intergenic | 55.0% |
| ! | CAGGGTATCTTGGCTCCACT+AGG | + | 33274:3874-3893 | MS.gene93912:intron | 55.0% |
| !! | ACGCCATACTCTGGGATGGA+AGG | + | 33274:4871-4890 | MS.gene93912:CDS | 55.0% |
| !! | ACGGTCAGATTTTGACGCGC+AGG | + | 33274:5349-5368 | MS.gene93912:intron | 55.0% |
| !! | CTCTGGGATGGAAGGCAAAG+TGG | + | 33274:4879-4898 | MS.gene93912:CDS | 55.0% |
| !! | GAGGGTGCTGTCTAGGATGT+GGG | + | 33274:5264-5283 | MS.gene93912:intron | 55.0% |
| AGACAGCACCCTCCAGACCA+TGG | - | 33274:5257-5276 | None:intergenic | 60.0% | |
| CCAGATCACACACCTGGTCG+AGG | - | 33274:3772-3791 | None:intergenic | 60.0% | |
| CCCCGGCACAAGCTCAGTTA+AGG | - | 33274:3259-3278 | None:intergenic | 60.0% | |
| CCTCGACCAGGTGTGTGATC+TGG | + | 33274:3769-3788 | MS.gene93912:intron | 60.0% | |
| GCCAGCGCTTGACCTTCCAA+AGG | + | 33274:2206-2225 | MS.gene93912:CDS | 60.0% | |
| ! | GTTGCTGGCTGTGTCCCTCA+AGG | + | 33274:2057-2076 | MS.gene93912:CDS | 60.0% |
| !! | GGAGGGTGCTGTCTAGGATG+TGG | + | 33274:5263-5282 | MS.gene93912:intron | 60.0% |
| !! | TGGTCTGGAGGGTGCTGTCT+AGG | + | 33274:5257-5276 | MS.gene93912:intron | 60.0% |
| AGAGGCCCTGAGACCATGGG+AGG | - | 33274:5394-5413 | None:intergenic | 65.0% | |
| CTATCGGGCCTTTGGCCCGA+TGG | - | 33274:4433-4452 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 33274 | gene | 2009 | 6152 | 2009 | ID=MS.gene93912 |
| 33274 | mRNA | 2009 | 6152 | 2009 | ID=MS.gene93912.t1;Parent=MS.gene93912 |
| 33274 | exon | 2009 | 2227 | 2009 | ID=MS.gene93912.t1.exon1;Parent=MS.gene93912.t1 |
| 33274 | CDS | 2009 | 2227 | 2009 | ID=cds.MS.gene93912.t1;Parent=MS.gene93912.t1 |
| 33274 | exon | 2351 | 2470 | 2351 | ID=MS.gene93912.t1.exon2;Parent=MS.gene93912.t1 |
| 33274 | CDS | 2351 | 2470 | 2351 | ID=cds.MS.gene93912.t1;Parent=MS.gene93912.t1 |
| 33274 | exon | 2660 | 2735 | 2660 | ID=MS.gene93912.t1.exon3;Parent=MS.gene93912.t1 |
| 33274 | CDS | 2660 | 2735 | 2660 | ID=cds.MS.gene93912.t1;Parent=MS.gene93912.t1 |
| 33274 | exon | 2922 | 3130 | 2922 | ID=MS.gene93912.t1.exon4;Parent=MS.gene93912.t1 |
| 33274 | CDS | 2922 | 3130 | 2922 | ID=cds.MS.gene93912.t1;Parent=MS.gene93912.t1 |
| 33274 | exon | 3207 | 3315 | 3207 | ID=MS.gene93912.t1.exon5;Parent=MS.gene93912.t1 |
| 33274 | CDS | 3207 | 3315 | 3207 | ID=cds.MS.gene93912.t1;Parent=MS.gene93912.t1 |
| 33274 | exon | 3686 | 3778 | 3686 | ID=MS.gene93912.t1.exon6;Parent=MS.gene93912.t1 |
| 33274 | CDS | 3686 | 3778 | 3686 | ID=cds.MS.gene93912.t1;Parent=MS.gene93912.t1 |
| 33274 | exon | 4785 | 4945 | 4785 | ID=MS.gene93912.t1.exon7;Parent=MS.gene93912.t1 |
| 33274 | CDS | 4785 | 4945 | 4785 | ID=cds.MS.gene93912.t1;Parent=MS.gene93912.t1 |
| 33274 | exon | 5601 | 6152 | 5601 | ID=MS.gene93912.t1.exon8;Parent=MS.gene93912.t1 |
| 33274 | CDS | 5601 | 6152 | 5601 | ID=cds.MS.gene93912.t1;Parent=MS.gene93912.t1 |
| Gene Sequence |
| Protein sequence |
