Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94168.t1 | XP_003616760.1 | 95.5 | 535 | 23 | 1 | 1 | 534 | 1 | 535 | 3.20E-275 | 957.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94168.t1 | Q5XVC7 | 41.1 | 528 | 237 | 13 | 21 | 534 | 49 | 516 | 6.4e-75 | 283.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94168.t1 | G7KH30 | 95.5 | 535 | 23 | 1 | 1 | 534 | 1 | 535 | 2.3e-275 | 957.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049302 | MS.gene94168 | 0.807543 | 4.80E-50 | -1.69E-46 |
| MS.gene049418 | MS.gene94168 | 0.863229 | 2.89E-64 | -1.69E-46 |
| MS.gene049698 | MS.gene94168 | 0.811525 | 6.70E-51 | -1.69E-46 |
| MS.gene049989 | MS.gene94168 | 0.816605 | 5.07E-52 | -1.69E-46 |
| MS.gene050297 | MS.gene94168 | 0.831088 | 2.04E-55 | -1.69E-46 |
| MS.gene050310 | MS.gene94168 | 0.813871 | 2.05E-51 | -1.69E-46 |
| MS.gene050589 | MS.gene94168 | 0.808839 | 2.54E-50 | -1.69E-46 |
| MS.gene051067 | MS.gene94168 | 0.858311 | 8.99E-63 | -1.69E-46 |
| MS.gene051478 | MS.gene94168 | 0.803369 | 3.60E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene94168 | 0.821796 | 3.34E-53 | -1.69E-46 |
| MS.gene053536 | MS.gene94168 | 0.80659 | 7.64E-50 | -1.69E-46 |
| MS.gene053538 | MS.gene94168 | 0.810285 | 1.24E-50 | -1.69E-46 |
| MS.gene054584 | MS.gene94168 | 0.826114 | 3.24E-54 | -1.69E-46 |
| MS.gene055777 | MS.gene94168 | 0.815856 | 7.46E-52 | -1.69E-46 |
| MS.gene056704 | MS.gene94168 | 0.80274 | 4.86E-49 | -1.69E-46 |
| MS.gene05709 | MS.gene94168 | 0.806785 | 6.95E-50 | -1.69E-46 |
| MS.gene058197 | MS.gene94168 | 0.81463 | 1.40E-51 | -1.69E-46 |
| MS.gene058198 | MS.gene94168 | 0.812791 | 3.55E-51 | -1.69E-46 |
| MS.gene058823 | MS.gene94168 | 0.813409 | 2.60E-51 | -1.69E-46 |
| MS.gene05894 | MS.gene94168 | 0.809694 | 1.67E-50 | -1.69E-46 |
| MS.gene059300 | MS.gene94168 | 0.832007 | 1.21E-55 | -1.69E-46 |
| MS.gene059424 | MS.gene94168 | 0.806211 | 9.18E-50 | -1.69E-46 |
| MS.gene06057 | MS.gene94168 | 0.847753 | 9.47E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94168.t1 | MTR_5g083980 | 95.619 | 525 | 23 | 0 | 10 | 534 | 11 | 535 | 0.0 | 994 |
| MS.gene94168.t1 | MTR_3g072350 | 53.528 | 581 | 194 | 11 | 17 | 534 | 12 | 579 | 5.57e-173 | 501 |
| MS.gene94168.t1 | MTR_3g072350 | 52.410 | 498 | 170 | 8 | 17 | 451 | 12 | 505 | 3.72e-141 | 417 |
| MS.gene94168.t1 | MTR_7g072550 | 36.691 | 556 | 278 | 13 | 26 | 530 | 27 | 559 | 2.77e-84 | 272 |
| MS.gene94168.t1 | MTR_4g029090 | 37.848 | 539 | 282 | 14 | 19 | 523 | 18 | 537 | 3.25e-71 | 238 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94168.t1 | AT2G40480 | 41.463 | 533 | 228 | 16 | 21 | 534 | 49 | 516 | 7.39e-92 | 290 |
| MS.gene94168.t1 | AT3G56270 | 36.842 | 456 | 198 | 17 | 23 | 460 | 37 | 420 | 1.66e-47 | 171 |
| MS.gene94168.t1 | AT2G38370 | 31.992 | 522 | 288 | 11 | 30 | 526 | 25 | 504 | 4.92e-44 | 164 |
| MS.gene94168.t1 | AT2G38370 | 31.992 | 522 | 288 | 11 | 30 | 526 | 42 | 521 | 8.76e-44 | 163 |
| MS.gene94168.t1 | AT3G51720 | 36.934 | 287 | 111 | 7 | 29 | 313 | 11 | 229 | 8.36e-19 | 89.4 |
Find 77 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTCAGGTATTTGAAATT+CGG | 0.271157 | 5.4:-66505511 | None:intergenic |
| CTTCTTCTTCTGATGTGATA+TGG | 0.272323 | 5.4:-66506012 | None:intergenic |
| AAAGAAGAAGAGATGGAAAA+TGG | 0.276556 | 5.4:+66503182 | MS.gene94168:CDS |
| TTTGCTGCGTAGAACTTCTT+TGG | 0.279623 | 5.4:-66505625 | None:intergenic |
| AAAGAAGCTGTTACACGTTT+TGG | 0.285585 | 5.4:+66503263 | MS.gene94168:CDS |
| TCTTCAGGTATTTGAAATTC+GGG | 0.319312 | 5.4:-66505510 | None:intergenic |
| ACTTGATGTGCTTGAAGAAC+TGG | 0.339651 | 5.4:+66504762 | MS.gene94168:CDS |
| TTCCTAAGGGGAATGATATT+CGG | 0.360853 | 5.4:-66506046 | None:intergenic |
| ACATATCGGGCGATGAAGTA+TGG | 0.361701 | 5.4:-66504945 | None:intergenic |
| TCACATCAGAAGAAGAAGTT+TGG | 0.372747 | 5.4:+66506017 | MS.gene94168:CDS |
| ATCATCATCTTCTTCTCCAT+TGG | 0.380777 | 5.4:-66503140 | None:intergenic |
| TAATTTCTCGAGAATCGTTT+TGG | 0.386491 | 5.4:-66504791 | None:intergenic |
| GATGATGATGGAAGATTCAT+TGG | 0.391517 | 5.4:+66503157 | MS.gene94168:CDS |
| TTTATCATTTCGCTTTCCTA+AGG | 0.403073 | 5.4:-66506060 | None:intergenic |
| GTGCTGCTGAAGAGGCTCTA+AGG | 0.408138 | 5.4:+66505700 | MS.gene94168:CDS |
| TAACTCGGTTAGCAACATAT+CGG | 0.412438 | 5.4:-66504959 | None:intergenic |
| GCTGAAATCAAGGCTCTATC+TGG | 0.415677 | 5.4:+66505405 | MS.gene94168:CDS |
| GATGTGATATGGACTGCTTT+TGG | 0.421669 | 5.4:-66506001 | None:intergenic |
| ACTCAATCGTGCGAAAATCT+TGG | 0.422943 | 5.4:+66504853 | MS.gene94168:CDS |
| TTCTTCAAGATAGACTCTTC+AGG | 0.424981 | 5.4:-66505525 | None:intergenic |
| TGGTTACCGCTTTACAAACT+TGG | 0.437609 | 5.4:+66503299 | MS.gene94168:CDS |
| ACCAGAAGCTCCTGTAGAAA+AGG | 0.464298 | 5.4:+66505170 | MS.gene94168:CDS |
| TGAGGAACAAGCAGCAAAGT+TGG | 0.465035 | 5.4:+66504708 | MS.gene94168:CDS |
| GCTTCTTTAACTGACTCAAA+TGG | 0.468928 | 5.4:-66503248 | None:intergenic |
| AACTCGGTTAGCAACATATC+GGG | 0.470317 | 5.4:-66504958 | None:intergenic |
| AAAGCAACGTGCTGCTGAAG+AGG | 0.489875 | 5.4:+66505692 | MS.gene94168:CDS |
| CGTTGCTCTAGCTGAAATCA+AGG | 0.490440 | 5.4:+66505395 | MS.gene94168:CDS |
| GGTAAAACTATAAACGATCT+CGG | 0.493887 | 5.4:+66505003 | MS.gene94168:CDS |
| TTCAGCTAGAGCAACGGCTT+CGG | 0.499012 | 5.4:-66505388 | None:intergenic |
| TTATCATTTCGCTTTCCTAA+GGG | 0.506744 | 5.4:-66506059 | None:intergenic |
| TTTGTCGTAGTATATTCGTC+AGG | 0.509274 | 5.4:-66505873 | None:intergenic |
| ACAAGCAGCAAAGTTGGAAA+AGG | 0.509543 | 5.4:+66504714 | MS.gene94168:CDS |
| AGATCTACTCAGCAGGAAGC+AGG | 0.509837 | 5.4:+66505848 | MS.gene94168:CDS |
| GTGGATGTTGAACAGTTCAA+TGG | 0.511134 | 5.4:+66505237 | MS.gene94168:CDS |
| CTGCAGAAGTTTCGAAGCAA+GGG | 0.512038 | 5.4:+66505277 | MS.gene94168:CDS |
| GTAAAACTATAAACGATCTC+GGG | 0.525454 | 5.4:+66505004 | MS.gene94168:CDS |
| TGAAGAGTCTATCTTGAAGA+AGG | 0.526219 | 5.4:+66505527 | MS.gene94168:CDS |
| GGAAGAGCACGCTGAAACCA+AGG | 0.526605 | 5.4:+66505902 | MS.gene94168:CDS |
| CTGAAGAGGCTCTAAGGAGA+TGG | 0.529424 | 5.4:+66505706 | MS.gene94168:CDS |
| CAATGAGAGATCTACTCAGC+AGG | 0.529935 | 5.4:+66505841 | MS.gene94168:CDS |
| GGAGAAGAAGATGATGATGA+TGG | 0.532180 | 5.4:+66503145 | MS.gene94168:CDS |
| CTTTGACATAAAGAAAATTG+AGG | 0.537769 | 5.4:+66504690 | MS.gene94168:CDS |
| TTTGAATAAGAAGATGAAGA+AGG | 0.538398 | 5.4:+66505050 | MS.gene94168:CDS |
| CACCCCTCAAAAGGTTGTGA+AGG | 0.541484 | 5.4:+66505206 | MS.gene94168:CDS |
| TCAAATGCTTCGAGCAATGA+GGG | 0.544411 | 5.4:+66505935 | MS.gene94168:CDS |
| CATTTGACTCAACGCTACCT+TGG | 0.550383 | 5.4:-66505919 | None:intergenic |
| ATCCGAATATCATTCCCCTT+AGG | 0.550700 | 5.4:+66506044 | MS.gene94168:CDS |
| GAAACCGAGGATCTTACAGC+TGG | 0.555875 | 5.4:-66505819 | None:intergenic |
| CAACTGAACATGAGAATGAC+GGG | 0.556282 | 5.4:+66505973 | MS.gene94168:CDS |
| GATTCCTGAAAACTATCTCA+AGG | 0.563847 | 5.4:+66505728 | MS.gene94168:CDS |
| CTTGATTTCAGCTAGAGCAA+CGG | 0.565358 | 5.4:-66505394 | None:intergenic |
| CTTGATGTGCTTGAAGAACT+GGG | 0.566278 | 5.4:+66504763 | MS.gene94168:CDS |
| CCGTCATTCTCATGTTCAGT+TGG | 0.568973 | 5.4:-66505972 | None:intergenic |
| ATATACTACGACAAAGGAGA+TGG | 0.572916 | 5.4:+66505881 | MS.gene94168:CDS |
| AAAGAAGCTAAGATGAACCT+TGG | 0.577340 | 5.4:+66504982 | MS.gene94168:CDS |
| GGTTGTGAAGGATTTCAAAG+TGG | 0.577609 | 5.4:+66505218 | MS.gene94168:CDS |
| AAAGATGGAAGAAGCTGCAA+TGG | 0.578367 | 5.4:+66505362 | MS.gene94168:CDS |
| TTAAGACTGCTGAGATGAGG+TGG | 0.586641 | 5.4:+66505328 | MS.gene94168:CDS |
| TGTTGAACAGTTCAATGGAA+TGG | 0.592209 | 5.4:+66505242 | MS.gene94168:CDS |
| TCTGCAGAAGTTTCGAAGCA+AGG | 0.594473 | 5.4:+66505276 | MS.gene94168:CDS |
| GCTTCACCAAGTTTGTAAAG+CGG | 0.595502 | 5.4:-66503305 | None:intergenic |
| GAAGCCAGCTGTAAGATCCT+CGG | 0.596662 | 5.4:+66505815 | MS.gene94168:CDS |
| TATCATTTCGCTTTCCTAAG+GGG | 0.598187 | 5.4:-66506058 | None:intergenic |
| TCATCGAGTTATGCATAGCT+CGG | 0.600248 | 5.4:-66505752 | None:intergenic |
| AGCTATCTCTGCTCAAAATG+TGG | 0.600750 | 5.4:+66505122 | MS.gene94168:CDS |
| ATATTAAGACTGCTGAGATG+AGG | 0.602890 | 5.4:+66505325 | MS.gene94168:CDS |
| CCAACTGAACATGAGAATGA+CGG | 0.608552 | 5.4:+66505972 | MS.gene94168:CDS |
| GTCAAATGCTTCGAGCAATG+AGG | 0.623709 | 5.4:+66505934 | MS.gene94168:CDS |
| TGACGAATATACTACGACAA+AGG | 0.630375 | 5.4:+66505875 | MS.gene94168:CDS |
| CTTCAGGTATTTGAAATTCG+GGG | 0.632963 | 5.4:-66505509 | None:intergenic |
| TGCAGAAGTTTCGAAGCAAG+GGG | 0.640876 | 5.4:+66505278 | MS.gene94168:CDS |
| TAGATCTCTCATTGAAACCG+AGG | 0.641066 | 5.4:-66505832 | None:intergenic |
| TCGGGCGATGAAGTATGGCA+TGG | 0.643983 | 5.4:-66504940 | None:intergenic |
| ATTCCTGAAAACTATCTCAA+GGG | 0.651330 | 5.4:+66505729 | MS.gene94168:CDS |
| GAAATCAAGGCTCTATCTGG+TGG | 0.653836 | 5.4:+66505408 | MS.gene94168:CDS |
| AGTTTGTAAAGCGGTAACCA+AGG | 0.675418 | 5.4:-66503296 | None:intergenic |
| TGTTCTCGCATAGAAAATCG+CGG | 0.731658 | 5.4:-66505444 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACAAATTAATAATTATG+TGG | + | chr5.4:66503626-66503645 | MS.gene94168:intron | 10.0% |
| !!! | TTATATTTTGACAAAATAAT+AGG | - | chr5.4:66504497-66504516 | None:intergenic | 10.0% |
| !! | AAACATAAAACATTGAAAAT+TGG | + | chr5.4:66504312-66504331 | MS.gene94168:intron | 15.0% |
| !! | ATTTACTGTTATGATAAAAA+AGG | + | chr5.4:66503355-66503374 | MS.gene94168:intron | 15.0% |
| !!! | ACACAATATTCTAAAAAAAT+TGG | + | chr5.4:66505593-66505612 | MS.gene94168:CDS | 15.0% |
| !!! | ATTTTGTTTATATAAGCTAT+TGG | + | chr5.4:66503587-66503606 | MS.gene94168:intron | 15.0% |
| !!! | TTTTGTTTATATAAGCTATT+GGG | + | chr5.4:66503588-66503607 | MS.gene94168:intron | 15.0% |
| !! | ATTCGCTATAACAAAAATAA+CGG | - | chr5.4:66504053-66504072 | None:intergenic | 20.0% |
| !! | TAACAGTAAATAAAAAAGAG+AGG | - | chr5.4:66503346-66503365 | None:intergenic | 20.0% |
| !!! | ATTTTAACAGAAGCTTTAAA+TGG | + | chr5.4:66505651-66505670 | MS.gene94168:CDS | 20.0% |
| !!! | CAATATTCTAAAAAAATTGG+AGG | + | chr5.4:66505596-66505615 | MS.gene94168:CDS | 20.0% |
| !!! | TACTTCATCAATTTTGAAAT+TGG | - | chr5.4:66505562-66505581 | None:intergenic | 20.0% |
| !!! | TCTTAAACTTTTCTATTACT+TGG | + | chr5.4:66504405-66504424 | MS.gene94168:intron | 20.0% |
| !!! | TTTAAGATCATAGTCAAATT+TGG | - | chr5.4:66504392-66504411 | None:intergenic | 20.0% |
| !!! | TTTGTAAATGTTGTTTTTGA+AGG | + | chr5.4:66503499-66503518 | MS.gene94168:intron | 20.0% |
| !!! | TTTTGTCAAAATATAACGAT+CGG | + | chr5.4:66504501-66504520 | MS.gene94168:intron | 20.0% |
| ! | AATAGAAAAACAAACAACAC+AGG | - | chr5.4:66503471-66503490 | None:intergenic | 25.0% |
| ! | ATTCACTAAAATTTGCATTG+AGG | - | chr5.4:66503798-66503817 | None:intergenic | 25.0% |
| ! | CTTTGACATAAAGAAAATTG+AGG | + | chr5.4:66504690-66504709 | MS.gene94168:CDS | 25.0% |
| ! | TTTGAATAAGAAGATGAAGA+AGG | + | chr5.4:66505050-66505069 | MS.gene94168:CDS | 25.0% |
| ! | TTTGTCAAAATATAACGATC+GGG | + | chr5.4:66504502-66504521 | MS.gene94168:intron | 25.0% |
| !! | AAAGTAAAATCCTTTTCTAC+AGG | - | chr5.4:66505183-66505202 | None:intergenic | 25.0% |
| !! | TATTCTAAAAAAATTGGAGG+AGG | + | chr5.4:66505599-66505618 | MS.gene94168:CDS | 25.0% |
| !! | TATTTCAGTTAGCAGATTTT+TGG | - | chr5.4:66503953-66503972 | None:intergenic | 25.0% |
| !! | TGTTTTCAAATTGCACAATA+AGG | - | chr5.4:66504142-66504161 | None:intergenic | 25.0% |
| !!! | ATGCAAATTTTAGTGAATTG+CGG | + | chr5.4:66503800-66503819 | MS.gene94168:intron | 25.0% |
| !!! | ATTTTTGTTATAGCGAATCT+AGG | + | chr5.4:66504055-66504074 | MS.gene94168:intron | 25.0% |
| !!! | GATGCATGTATTTTTTTTTG+CGG | + | chr5.4:66503913-66503932 | MS.gene94168:intron | 25.0% |
| !!! | TTTTTTTTTGCGGAAAATCA+AGG | + | chr5.4:66503923-66503942 | MS.gene94168:intron | 25.0% |
| AAAGAAGAAGAGATGGAAAA+TGG | + | chr5.4:66503182-66503201 | MS.gene94168:CDS | 30.0% | |
| AACATCAGAGTGAATTACAA+AGG | - | chr5.4:66504637-66504656 | None:intergenic | 30.0% | |
| ACATCAGAGTGAATTACAAA+GGG | - | chr5.4:66504636-66504655 | None:intergenic | 30.0% | |
| ATTCCTGAAAACTATCTCAA+GGG | + | chr5.4:66505729-66505748 | MS.gene94168:CDS | 30.0% | |
| ATTGGAAAAAGAAGAAGAGA+TGG | + | chr5.4:66503175-66503194 | MS.gene94168:CDS | 30.0% | |
| GAGATATGATTAGATGTATG+TGG | - | chr5.4:66504165-66504184 | None:intergenic | 30.0% | |
| GGTAAAACTATAAACGATCT+CGG | + | chr5.4:66505003-66505022 | MS.gene94168:CDS | 30.0% | |
| GTAAAACTATAAACGATCTC+GGG | + | chr5.4:66505004-66505023 | MS.gene94168:CDS | 30.0% | |
| GTGTTATCAATACTGAATTG+TGG | - | chr5.4:66503891-66503910 | None:intergenic | 30.0% | |
| TAAGATTGTCATTAGCAGAA+CGG | + | chr5.4:66504658-66504677 | MS.gene94168:intron | 30.0% | |
| TTATCATTTCGCTTTCCTAA+GGG | - | chr5.4:66506062-66506081 | None:intergenic | 30.0% | |
| TTTATCATTTCGCTTTCCTA+AGG | - | chr5.4:66506063-66506082 | None:intergenic | 30.0% | |
| ! | AAAACGACACTTTGTTATGT+TGG | - | chr5.4:66504221-66504240 | None:intergenic | 30.0% |
| ! | AAATGTAAAATCGACTTCAC+TGG | + | chr5.4:66503385-66503404 | MS.gene94168:intron | 30.0% |
| ! | AATGTAAAATCGACTTCACT+GGG | + | chr5.4:66503386-66503405 | MS.gene94168:intron | 30.0% |
| ! | CTCTTCAGGTATTTGAAATT+CGG | - | chr5.4:66505514-66505533 | None:intergenic | 30.0% |
| ! | TAATTTCTCGAGAATCGTTT+TGG | - | chr5.4:66504794-66504813 | None:intergenic | 30.0% |
| ! | TCTTCAGGTATTTGAAATTC+GGG | - | chr5.4:66505513-66505532 | None:intergenic | 30.0% |
| ! | TTCGCAATATTTTCTCTTGA+CGG | - | chr5.4:66504912-66504931 | None:intergenic | 30.0% |
| !! | CATCTTAGCTTCTTTTAACT+CGG | - | chr5.4:66504977-66504996 | None:intergenic | 30.0% |
| !! | GATCGTTTATAGTTTTACCA+AGG | - | chr5.4:66505002-66505021 | None:intergenic | 30.0% |
| !!! | CTTTGTCATTGCTTCTTTTT+TGG | - | chr5.4:66505148-66505167 | None:intergenic | 30.0% |
| AAAGAAGCTAAGATGAACCT+TGG | + | chr5.4:66504982-66505001 | MS.gene94168:CDS | 35.0% | |
| ATAATAGGCACTAACAAGAC+AGG | - | chr5.4:66504482-66504501 | None:intergenic | 35.0% | |
| ATAGATTTACGAGCAGATAG+AGG | + | chr5.4:66503977-66503996 | MS.gene94168:intron | 35.0% | |
| ATATACTACGACAAAGGAGA+TGG | + | chr5.4:66505881-66505900 | MS.gene94168:CDS | 35.0% | |
| ATATGCATTTCCTTATCTCG+CGG | - | chr5.4:66504353-66504372 | None:intergenic | 35.0% | |
| ATATTAAGACTGCTGAGATG+AGG | + | chr5.4:66505325-66505344 | MS.gene94168:CDS | 35.0% | |
| ATTAAACCAAAGACCTTGAG+AGG | - | chr5.4:66503772-66503791 | None:intergenic | 35.0% | |
| CATCAGAGTGAATTACAAAG+GGG | - | chr5.4:66504635-66504654 | None:intergenic | 35.0% | |
| CTTCTTCTTCTGATGTGATA+TGG | - | chr5.4:66506015-66506034 | None:intergenic | 35.0% | |
| GATTCCTGAAAACTATCTCA+AGG | + | chr5.4:66505728-66505747 | MS.gene94168:CDS | 35.0% | |
| TAACTCGGTTAGCAACATAT+CGG | - | chr5.4:66504962-66504981 | None:intergenic | 35.0% | |
| TATCATTTCGCTTTCCTAAG+GGG | - | chr5.4:66506061-66506080 | None:intergenic | 35.0% | |
| TCACATCAGAAGAAGAAGTT+TGG | + | chr5.4:66506017-66506036 | MS.gene94168:CDS | 35.0% | |
| TGAAGAGTCTATCTTGAAGA+AGG | + | chr5.4:66505527-66505546 | MS.gene94168:CDS | 35.0% | |
| TGACGAATATACTACGACAA+AGG | + | chr5.4:66505875-66505894 | MS.gene94168:CDS | 35.0% | |
| TGTTGAACAGTTCAATGGAA+TGG | + | chr5.4:66505242-66505261 | MS.gene94168:CDS | 35.0% | |
| TTCCTAAGGGGAATGATATT+CGG | - | chr5.4:66506049-66506068 | None:intergenic | 35.0% | |
| TTCTTCAAGATAGACTCTTC+AGG | - | chr5.4:66505528-66505547 | None:intergenic | 35.0% | |
| TTTGTCGTAGTATATTCGTC+AGG | - | chr5.4:66505876-66505895 | None:intergenic | 35.0% | |
| ! | AAAGAAGCTGTTACACGTTT+TGG | + | chr5.4:66503263-66503282 | MS.gene94168:CDS | 35.0% |
| ! | AAATCCTTCACAACCTTTTG+AGG | - | chr5.4:66505213-66505232 | None:intergenic | 35.0% |
| ! | AATCCTTCACAACCTTTTGA+GGG | - | chr5.4:66505212-66505231 | None:intergenic | 35.0% |
| ! | ATGTAAAATCGACTTCACTG+GGG | + | chr5.4:66503387-66503406 | MS.gene94168:intron | 35.0% |
| ! | CTTCAGGTATTTGAAATTCG+GGG | - | chr5.4:66505512-66505531 | None:intergenic | 35.0% |
| ! | GCTTCTTTAACTGACTCAAA+TGG | - | chr5.4:66503251-66503270 | None:intergenic | 35.0% |
| !! | GATGATGATGGAAGATTCAT+TGG | + | chr5.4:66503157-66503176 | MS.gene94168:CDS | 35.0% |
| AAAGATGGAAGAAGCTGCAA+TGG | + | chr5.4:66505362-66505381 | MS.gene94168:CDS | 40.0% | |
| AACTCGGTTAGCAACATATC+GGG | - | chr5.4:66504961-66504980 | None:intergenic | 40.0% | |
| ACAAACAACACAGGACTTCA+TGG | - | chr5.4:66503462-66503481 | None:intergenic | 40.0% | |
| ACAAGCAGCAAAGTTGGAAA+AGG | + | chr5.4:66504714-66504733 | MS.gene94168:CDS | 40.0% | |
| ACCATCAGACTAATCGAAGT+GGG | - | chr5.4:66503723-66503742 | None:intergenic | 40.0% | |
| ACTCAATCGTGCGAAAATCT+TGG | + | chr5.4:66504853-66504872 | MS.gene94168:CDS | 40.0% | |
| ACTTGATGTGCTTGAAGAAC+TGG | + | chr5.4:66504762-66504781 | MS.gene94168:CDS | 40.0% | |
| AGCTATCTCTGCTCAAAATG+TGG | + | chr5.4:66505122-66505141 | MS.gene94168:CDS | 40.0% | |
| AGTTTGTAAAGCGGTAACCA+AGG | - | chr5.4:66503299-66503318 | None:intergenic | 40.0% | |
| ATCCGAATATCATTCCCCTT+AGG | + | chr5.4:66506044-66506063 | MS.gene94168:CDS | 40.0% | |
| CAACTGAACATGAGAATGAC+GGG | + | chr5.4:66505973-66505992 | MS.gene94168:CDS | 40.0% | |
| CCAACTGAACATGAGAATGA+CGG | + | chr5.4:66505972-66505991 | MS.gene94168:CDS | 40.0% | |
| CTTGATGTGCTTGAAGAACT+GGG | + | chr5.4:66504763-66504782 | MS.gene94168:CDS | 40.0% | |
| CTTGATTTCAGCTAGAGCAA+CGG | - | chr5.4:66505397-66505416 | None:intergenic | 40.0% | |
| GAATTGTGGAAAACCCATCT+CGG | - | chr5.4:66503877-66503896 | None:intergenic | 40.0% | |
| GCTTCACCAAGTTTGTAAAG+CGG | - | chr5.4:66503308-66503327 | None:intergenic | 40.0% | |
| GGTTGTGAAGGATTTCAAAG+TGG | + | chr5.4:66505218-66505237 | MS.gene94168:CDS | 40.0% | |
| GTGAATTGCGGAAAATTGAG+AGG | + | chr5.4:66503812-66503831 | MS.gene94168:intron | 40.0% | |
| GTGGATGTTGAACAGTTCAA+TGG | + | chr5.4:66505237-66505256 | MS.gene94168:CDS | 40.0% | |
| TAGATCTCTCATTGAAACCG+AGG | - | chr5.4:66505835-66505854 | None:intergenic | 40.0% | |
| TCAAATGCTTCGAGCAATGA+GGG | + | chr5.4:66505935-66505954 | MS.gene94168:CDS | 40.0% | |
| TCAGCTAGTAGCAACATGAA+TGG | + | chr5.4:66504024-66504043 | MS.gene94168:intron | 40.0% | |
| TCATCGAGTTATGCATAGCT+CGG | - | chr5.4:66505755-66505774 | None:intergenic | 40.0% | |
| TGGTTACCGCTTTACAAACT+TGG | + | chr5.4:66503299-66503318 | MS.gene94168:CDS | 40.0% | |
| TGTTCTCGCATAGAAAATCG+CGG | - | chr5.4:66505447-66505466 | None:intergenic | 40.0% | |
| TTTGCTGCGTAGAACTTCTT+TGG | - | chr5.4:66505628-66505647 | None:intergenic | 40.0% | |
| ! | ATCCTTCACAACCTTTTGAG+GGG | - | chr5.4:66505211-66505230 | None:intergenic | 40.0% |
| ! | GCAATATTTTCTCTTGACGG+TGG | - | chr5.4:66504909-66504928 | None:intergenic | 40.0% |
| ! | GGAGAAGAAGATGATGATGA+TGG | + | chr5.4:66503145-66503164 | MS.gene94168:CDS | 40.0% |
| ! | GTGGTTTGCAGCTAAAAAGA+TGG | + | chr5.4:66505347-66505366 | MS.gene94168:CDS | 40.0% |
| ! | TACTTTTGACACCCCTCAAA+AGG | + | chr5.4:66505197-66505216 | MS.gene94168:CDS | 40.0% |
| !! | AGGAAAGACTTTTTCTCGAG+AGG | + | chr5.4:66505070-66505089 | MS.gene94168:CDS | 40.0% |
| !! | GATGTGATATGGACTGCTTT+TGG | - | chr5.4:66506004-66506023 | None:intergenic | 40.0% |
| !! | TAGTCTGATGGTGTTGACTT+CGG | + | chr5.4:66503731-66503750 | MS.gene94168:intron | 40.0% |
| ACATATCGGGCGATGAAGTA+TGG | - | chr5.4:66504948-66504967 | None:intergenic | 45.0% | |
| ACCAGAAGCTCCTGTAGAAA+AGG | + | chr5.4:66505170-66505189 | MS.gene94168:CDS | 45.0% | |
| ACTTCATGGCCCAATGGATA+AGG | - | chr5.4:66503448-66503467 | None:intergenic | 45.0% | |
| CAATGAGAGATCTACTCAGC+AGG | + | chr5.4:66505841-66505860 | MS.gene94168:CDS | 45.0% | |
| CACCATCAGACTAATCGAAG+TGG | - | chr5.4:66503724-66503743 | None:intergenic | 45.0% | |
| CATTTGACTCAACGCTACCT+TGG | - | chr5.4:66505922-66505941 | None:intergenic | 45.0% | |
| CCGTCATTCTCATGTTCAGT+TGG | - | chr5.4:66505975-66505994 | None:intergenic | 45.0% | |
| CGTTGCTCTAGCTGAAATCA+AGG | + | chr5.4:66505395-66505414 | MS.gene94168:CDS | 45.0% | |
| CTGCAGAAGTTTCGAAGCAA+GGG | + | chr5.4:66505277-66505296 | MS.gene94168:CDS | 45.0% | |
| GAAATCAAGGCTCTATCTGG+TGG | + | chr5.4:66505408-66505427 | MS.gene94168:CDS | 45.0% | |
| GATGCATCGAGTGTTATCAC+CGG | + | chr5.4:66503679-66503698 | MS.gene94168:intron | 45.0% | |
| GCAGATAGAGGAAGAGACAT+AGG | + | chr5.4:66503989-66504008 | MS.gene94168:intron | 45.0% | |
| GCTAGTAGCAACATGAATGG+TGG | + | chr5.4:66504027-66504046 | MS.gene94168:intron | 45.0% | |
| GCTGAAATCAAGGCTCTATC+TGG | + | chr5.4:66505405-66505424 | MS.gene94168:CDS | 45.0% | |
| GGGACTAACAAGATGCGTTA+GGG | + | chr5.4:66504522-66504541 | MS.gene94168:intron | 45.0% | |
| GTCAAATGCTTCGAGCAATG+AGG | + | chr5.4:66505934-66505953 | MS.gene94168:CDS | 45.0% | |
| TCTACGGAACCAGAGATTCT+GGG | - | chr5.4:66503419-66503438 | None:intergenic | 45.0% | |
| TCTGCAGAAGTTTCGAAGCA+AGG | + | chr5.4:66505276-66505295 | MS.gene94168:CDS | 45.0% | |
| TGAGGAACAAGCAGCAAAGT+TGG | + | chr5.4:66504708-66504727 | MS.gene94168:CDS | 45.0% | |
| TGCAGAAGTTTCGAAGCAAG+GGG | + | chr5.4:66505278-66505297 | MS.gene94168:CDS | 45.0% | |
| TTAAGACTGCTGAGATGAGG+TGG | + | chr5.4:66505328-66505347 | MS.gene94168:CDS | 45.0% | |
| ! | AAAACCCATCTCGGTTGGTA+TGG | - | chr5.4:66503868-66503887 | None:intergenic | 45.0% |
| ! | GAAGCTGTTACACGTTTTGG+TGG | + | chr5.4:66503266-66503285 | MS.gene94168:CDS | 45.0% |
| ! | TCCTTTTCTACAGGAGCTTC+TGG | - | chr5.4:66505174-66505193 | None:intergenic | 45.0% |
| ! | TTTGAAGTGTGCTCCTCTCA+AGG | + | chr5.4:66503756-66503775 | MS.gene94168:intron | 45.0% |
| ! | TTTTCTACAGGAGCTTCTGG+TGG | - | chr5.4:66505171-66505190 | None:intergenic | 45.0% |
| !! | ACCCACTTCGATTAGTCTGA+TGG | + | chr5.4:66503719-66503738 | MS.gene94168:intron | 45.0% |
| !! | ACTTTTTCTCGAGAGGACAC+GGG | + | chr5.4:66505077-66505096 | MS.gene94168:CDS | 45.0% |
| !! | GACTTTTTCTCGAGAGGACA+CGG | + | chr5.4:66505076-66505095 | MS.gene94168:CDS | 45.0% |
| !! | GTTACACGTTTTGGTGGAAG+TGG | + | chr5.4:66503272-66503291 | MS.gene94168:CDS | 45.0% |
| AGACCAGCGCCTTATCCATT+GGG | + | chr5.4:66503436-66503455 | MS.gene94168:intron | 50.0% | |
| AGATCTACTCAGCAGGAAGC+AGG | + | chr5.4:66505848-66505867 | MS.gene94168:CDS | 50.0% | |
| CACCCCTCAAAAGGTTGTGA+AGG | + | chr5.4:66505206-66505225 | MS.gene94168:CDS | 50.0% | |
| CGGGACTAACAAGATGCGTT+AGG | + | chr5.4:66504521-66504540 | MS.gene94168:intron | 50.0% | |
| GAAACCGAGGATCTTACAGC+TGG | - | chr5.4:66505822-66505841 | None:intergenic | 50.0% | |
| GAAGCCAGCTGTAAGATCCT+CGG | + | chr5.4:66505815-66505834 | MS.gene94168:CDS | 50.0% | |
| GAGAACTGAACCGCGAGATA+AGG | + | chr5.4:66504340-66504359 | MS.gene94168:intron | 50.0% | |
| GTCTACGGAACCAGAGATTC+TGG | - | chr5.4:66503420-66503439 | None:intergenic | 50.0% | |
| TAGACCAGCGCCTTATCCAT+TGG | + | chr5.4:66503435-66503454 | MS.gene94168:intron | 50.0% | |
| TATCACCGGTGAGTGAACTG+CGG | + | chr5.4:66503693-66503712 | MS.gene94168:intron | 50.0% | |
| TGTGCTCCTCTCAAGGTCTT+TGG | + | chr5.4:66503763-66503782 | MS.gene94168:intron | 50.0% | |
| TGTGGAAAACCCATCTCGGT+TGG | - | chr5.4:66503873-66503892 | None:intergenic | 50.0% | |
| TTCAGCTAGAGCAACGGCTT+CGG | - | chr5.4:66505391-66505410 | None:intergenic | 50.0% | |
| ! | AAAGCAACGTGCTGCTGAAG+AGG | + | chr5.4:66505692-66505711 | MS.gene94168:CDS | 50.0% |
| ! | CGGCCCTTGAGATAGTTTTC+AGG | - | chr5.4:66505735-66505754 | None:intergenic | 50.0% |
| ! | GTTTTCCGCAGTTCACTCAC+CGG | - | chr5.4:66503701-66503720 | None:intergenic | 50.0% |
| !! | ATGGATAAGGCGCTGGTCTA+CGG | - | chr5.4:66503435-66503454 | None:intergenic | 50.0% |
| !! | CTGAAGAGGCTCTAAGGAGA+TGG | + | chr5.4:66505706-66505725 | MS.gene94168:CDS | 50.0% |
| !! | GTTTTGGTGGAAGTGGTCCT+TGG | + | chr5.4:66503279-66503298 | MS.gene94168:CDS | 50.0% |
| !!! | GTGGCGTTGGTTTTGGACTT+TGG | - | chr5.4:66503846-66503865 | None:intergenic | 50.0% |
| !!! | TGGTATGGTGGCGTTGGTTT+TGG | - | chr5.4:66503853-66503872 | None:intergenic | 50.0% |
| CACAGGACTTCATGGCCCAA+TGG | - | chr5.4:66503454-66503473 | None:intergenic | 55.0% | |
| GCCACCATACCAACCGAGAT+GGG | + | chr5.4:66503861-66503880 | MS.gene94168:intron | 55.0% | |
| GGGATCGAACCCAGAATCTC+TGG | + | chr5.4:66503407-66503426 | MS.gene94168:intron | 55.0% | |
| TCGGGCGATGAAGTATGGCA+TGG | - | chr5.4:66504943-66504962 | None:intergenic | 55.0% | |
| ! | ACCCATCTCGGTTGGTATGG+TGG | - | chr5.4:66503865-66503884 | None:intergenic | 55.0% |
| ! | GGAAGAGCACGCTGAAACCA+AGG | + | chr5.4:66505902-66505921 | MS.gene94168:CDS | 55.0% |
| ! | GTGCTGCTGAAGAGGCTCTA+AGG | + | chr5.4:66505700-66505719 | MS.gene94168:CDS | 55.0% |
| CGCCACCATACCAACCGAGA+TGG | + | chr5.4:66503860-66503879 | MS.gene94168:intron | 60.0% | |
| TGGCCCAATGGATAAGGCGC+TGG | - | chr5.4:66503442-66503461 | None:intergenic | 60.0% | |
| ! | CTCGGTTGGTATGGTGGCGT+TGG | - | chr5.4:66503859-66503878 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 66503143 | 66506091 | 66503143 | ID=MS.gene94168 |
| chr5.4 | mRNA | 66503143 | 66506091 | 66503143 | ID=MS.gene94168.t1;Parent=MS.gene94168 |
| chr5.4 | exon | 66503143 | 66503331 | 66503143 | ID=MS.gene94168.t1.exon1;Parent=MS.gene94168.t1 |
| chr5.4 | CDS | 66503143 | 66503331 | 66503143 | ID=cds.MS.gene94168.t1;Parent=MS.gene94168.t1 |
| chr5.4 | exon | 66504676 | 66506091 | 66504676 | ID=MS.gene94168.t1.exon2;Parent=MS.gene94168.t1 |
| chr5.4 | CDS | 66504676 | 66506091 | 66504676 | ID=cds.MS.gene94168.t1;Parent=MS.gene94168.t1 |
| Gene Sequence |
| Protein sequence |
