AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene94379

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94379.t1 MTR_4g033215 97.091 928 19 3 1 925 122 1044 0.0 1875
MS.gene94379.t1 MTR_7g092770 64.903 775 259 8 157 925 8 775 0.0 1066
MS.gene94379.t1 MTR_0305s0020 65.806 775 251 9 157 925 8 774 0.0 1048
MS.gene94379.t1 MTR_4g066150 64.267 778 269 6 149 925 1 770 0.0 1041
MS.gene94379.t1 MTR_5g010390 62.868 781 276 8 154 925 232 1007 0.0 1035
MS.gene94379.t1 MTR_3g027150 60.000 790 293 6 157 925 35 822 0.0 1001
MS.gene94379.t1 MTR_4g023460 55.084 895 358 10 70 925 253 1142 0.0 997
MS.gene94379.t1 MTR_0291s0010 59.217 792 303 7 152 925 8 797 0.0 989
MS.gene94379.t1 MTR_7g076900 55.400 787 325 9 157 925 235 1013 0.0 909
MS.gene94379.t1 MTR_8g031270 54.403 829 350 13 115 925 185 1003 0.0 908
MS.gene94379.t1 MTR_4g057675 50.699 787 359 11 153 925 12 783 0.0 768
MS.gene94379.t1 MTR_4g107850 49.738 764 335 16 183 925 303 1038 0.0 732
MS.gene94379.t1 MTR_4g071870 48.539 787 342 12 153 925 12 749 0.0 731
MS.gene94379.t1 MTR_6g027540 47.963 761 353 12 183 925 274 1009 0.0 713
MS.gene94379.t1 MTR_6g028050 44.967 765 379 15 181 925 284 1026 0.0 677
MS.gene94379.t1 MTR_1g015540 44.882 762 385 13 178 920 23 768 0.0 613
MS.gene94379.t1 MTR_5g096980 37.582 761 442 13 179 925 22 763 3.06e-168 509
MS.gene94379.t1 MTR_4g023250 60.000 130 50 1 795 924 1 128 3.13e-49 170
MS.gene94379.t1 MTR_4g023230 47.541 122 49 1 712 833 49 155 3.36e-30 117
MS.gene94379.t1 MTR_4g023390 47.115 104 33 2 798 901 16 97 1.85e-22 93.2
MS.gene94379.t1 MTR_4g023240 60.000 60 24 0 646 705 10 69 1.24e-15 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94379.t1 AT1G22610 74.856 867 187 6 68 925 185 1029 0.0 1330
MS.gene94379.t1 AT3G57880 66.150 774 249 8 157 925 8 773 0.0 1072
MS.gene94379.t1 AT3G57880 66.150 774 249 8 157 925 8 773 0.0 1072
MS.gene94379.t1 AT3G57880 66.150 774 249 8 157 925 8 773 0.0 1072
MS.gene94379.t1 AT3G57880 66.150 774 249 8 157 925 8 773 0.0 1072
MS.gene94379.t1 AT1G51570 65.464 776 254 8 157 925 8 776 0.0 1059
MS.gene94379.t1 AT5G12970 64.910 778 263 7 149 925 1 769 0.0 1049
MS.gene94379.t1 AT4G11610 59.857 842 314 12 98 925 180 1011 0.0 1023
MS.gene94379.t1 AT4G11610 59.857 842 314 12 98 925 176 1007 0.0 1023
MS.gene94379.t1 AT4G11610 59.857 842 314 12 98 925 43 874 0.0 1021
MS.gene94379.t1 AT5G06850 59.010 788 307 4 153 925 8 794 0.0 998
MS.gene94379.t1 AT5G48060 61.265 759 285 6 175 925 279 1036 0.0 983
MS.gene94379.t1 AT4G00700 51.357 884 373 15 59 925 163 1006 0.0 884
MS.gene94379.t1 AT4G00700 51.357 884 373 15 59 925 163 1006 0.0 884
MS.gene94379.t1 AT3G61300 53.535 792 335 14 142 925 206 972 0.0 874
MS.gene94379.t1 AT1G04150 54.293 792 319 13 157 925 241 1012 0.0 852
MS.gene94379.t1 AT4G20080 50.129 776 363 11 158 925 15 774 0.0 807
MS.gene94379.t1 AT1G74720 49.161 775 351 15 178 925 323 1081 0.0 739
MS.gene94379.t1 AT3G03680 47.903 787 352 16 166 925 262 1017 0.0 723
MS.gene94379.t1 AT5G17980 46.447 760 368 16 181 925 314 1049 0.0 686
MS.gene94379.t1 AT3G61720 36.776 794 421 24 181 924 32 794 3.34e-147 456
MS.gene94379.t1 AT5G03435 36.551 777 436 22 157 919 7 740 6.74e-141 437
MS.gene94379.t1 AT5G03435 38.927 578 316 14 157 725 7 556 2.11e-119 375
MS.gene94379.t1 AT5G44760 42.289 402 186 10 157 554 5 364 4.93e-92 300
MS.gene94379.t1 AT5G44760 23.392 513 260 15 351 827 36 451 2.88e-17 86.3
MS.gene94379.t1 AT1G03370 39.024 123 71 3 192 313 3 122 1.31e-14 79.0
MS.gene94379.t1 AT1G03370 39.024 123 71 3 192 313 3 122 1.52e-14 78.6

Find 223 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGTTGAACATAATGCATTT+TGG 0.124007 4.3:+67043051 None:intergenic
TGAGAGGCTTTAACCCTATT+TGG 0.166763 4.3:-67043858 MS.gene94379:CDS
CAACTATAATTGCTATAAAT+TGG 0.221955 4.3:+67042384 None:intergenic
TACTCATTATTATCCTCTTT+TGG 0.232381 4.3:-67043182 MS.gene94379:CDS
TGAACAAGGCAAGTTGTAAT+TGG 0.232879 4.3:+67042794 None:intergenic
TTTCTTTACTTGTTTGTGAT+TGG 0.239952 4.3:-67042719 MS.gene94379:CDS
ACGAGCATCCGGAAGCTTTC+CGG 0.246203 4.3:+67043693 None:intergenic
GTTTCCACCAATGCATATTC+TGG 0.248708 4.3:+67044573 None:intergenic
TCCTAACAATATTGAAATCT+TGG 0.261337 4.3:-67043761 MS.gene94379:CDS
CCTTCATAGGTAGCAAATTC+CGG 0.278494 4.3:+67043458 None:intergenic
ATAAGCTCCTCGTTCCAAAT+AGG 0.279173 4.3:+67043844 None:intergenic
TTCTTTACTTGTTTGTGATT+GGG 0.281409 4.3:-67042718 MS.gene94379:CDS
TGACATTATGCGATGAAAAT+TGG 0.281887 4.3:+67042877 None:intergenic
TCATCATCTTCTCACTGATC+TGG 0.283757 4.3:-67042433 MS.gene94379:CDS
CATATTCTGGATTCTGCTTT+GGG 0.284632 4.3:+67044586 None:intergenic
TCAGATCATTGTATCTGATT+TGG 0.286145 4.3:+67042283 None:intergenic
AACCCATTTGTTTCCATACT+TGG 0.294660 4.3:+67043399 None:intergenic
CATTGATTGGCTCCGCTATC+AGG 0.304148 4.3:-67043014 MS.gene94379:CDS
GCATATTCTGGATTCTGCTT+TGG 0.308566 4.3:+67044585 None:intergenic
GTGACAGTTGAGGACAAATT+TGG 0.316140 4.3:-67043784 MS.gene94379:CDS
TTGCACAGCTTGGGTTAATA+TGG 0.320005 4.3:-67043101 MS.gene94379:CDS
ATGGTTGGCAGTATCAATTC+AGG 0.324194 4.3:+67042743 None:intergenic
CTTGTTTGAGTTTCAACTCT+TGG 0.324264 4.3:+67044657 None:intergenic
GCATACTGTGTTGCCAAGTA+TGG 0.338450 4.3:-67043412 MS.gene94379:CDS
TTCCAATTCTCTGATCTTTG+TGG 0.338538 4.3:+67043248 None:intergenic
ATCTGCATTAACATAACATT+TGG 0.343336 4.3:+67044609 None:intergenic
CCCAAGATTTCAATATTGTT+AGG 0.347422 4.3:+67043760 None:intergenic
GAGTTCCACAAGCTTCTGTT+AGG 0.347484 4.3:-67043924 MS.gene94379:CDS
GAATTGGAAAGGTGAGAATA+AGG 0.347930 4.3:-67043234 MS.gene94379:CDS
TGTAAAGGAATTTCCTCATC+AGG 0.351220 4.3:+67044927 None:intergenic
ACTTGTTTGTGATTGGGATT+TGG 0.356204 4.3:-67042712 MS.gene94379:CDS
TGTGGAGGAGGGTGAGAATT+AGG 0.359962 4.3:+67044996 None:intergenic
TGATTGGGATTTGGAATTAC+CGG 0.361185 4.3:-67042703 MS.gene94379:CDS
AGCTTGTCATCCAGATGAAT+TGG 0.369444 4.3:-67042630 MS.gene94379:CDS
GGATTTGGAATTACCGGTTC+CGG 0.369744 4.3:-67042697 MS.gene94379:CDS
GATTTGGTTACTCATGATAA+AGG 0.374508 4.3:-67043949 MS.gene94379:CDS
AGTGATTGAAGCTCAAGATT+TGG 0.375103 4.3:-67043965 MS.gene94379:CDS
GACCACAAAGATCAGAGAAT+TGG 0.375978 4.3:-67043250 MS.gene94379:CDS
CCAAGTTTCACTTCCACATA+AGG 0.380141 4.3:+67044402 None:intergenic
AATCTCTTGAAGAAATTAAC+TGG 0.381502 4.3:+67042311 None:intergenic
TTCATAGACCTAGCGCGGTC+GGG 0.388551 4.3:-67043660 MS.gene94379:CDS
ATCTTAATGAAGTGCCGGTT+AGG 0.389058 4.3:-67044215 MS.gene94379:CDS
CTACCATCTTTGCCCTTCAT+AGG 0.399165 4.3:+67043445 None:intergenic
ATTGGAGACCGGAAAGCTTC+CGG 0.401323 4.3:-67043701 MS.gene94379:CDS
GCAGCTAGGTTGAGGTATAA+AGG 0.402038 4.3:-67044537 MS.gene94379:CDS
TGAGGTTTACTTGCACAGCT+TGG 0.403193 4.3:-67043111 MS.gene94379:CDS
TAAGCTCCTCGTTCCAAATA+GGG 0.405460 4.3:+67043845 None:intergenic
GGCTCCTCAGTGGTATAGAT+TGG 0.406615 4.3:-67044172 MS.gene94379:CDS
CTAAATCTCCAACCACAGTT+TGG 0.407369 4.3:+67042519 None:intergenic
AGCCAATCAATGTGTCTAAC+AGG 0.409018 4.3:+67043025 None:intergenic
GCAGGAGCAGGAGCAGGAGC+AGG 0.410631 4.3:+67044723 None:intergenic
GAGGTTTACTTGCACAGCTT+GGG 0.411394 4.3:-67043110 MS.gene94379:CDS
CTATCCGGCGGAACCCTAAC+CGG 0.413279 4.3:+67044201 None:intergenic
CCGGAATTTGCTACCTATGA+AGG 0.416546 4.3:-67043458 MS.gene94379:CDS
TACCTGTTAGACACATTGAT+TGG 0.416771 4.3:-67043027 MS.gene94379:CDS
GTATACTGCTCATTCCATCT+AGG 0.418342 4.3:+67043346 None:intergenic
CTTCATAGGTAGCAAATTCC+GGG 0.419673 4.3:+67043459 None:intergenic
GAACAAGGCAAGTTGTAATT+GGG 0.420619 4.3:+67042795 None:intergenic
GTGAAATTATGCTTGCTGTT+TGG 0.421078 4.3:-67044119 MS.gene94379:CDS
ATAAGAATCAGCATCCTGTT+TGG 0.424122 4.3:-67044350 MS.gene94379:CDS
GGTTCCGCCGGATAGTCCTT+TGG 0.424308 4.3:-67044193 MS.gene94379:CDS
TCTTCCTCCCCGACCGCGCT+AGG 0.430116 4.3:+67043652 None:intergenic
AATTCCTCATCCAATTCATC+TGG 0.433329 4.3:+67042620 None:intergenic
GTGGATTCCTTGGCCGGAAC+CGG 0.433338 4.3:+67042684 None:intergenic
CCTAACAATATTGAAATCTT+GGG 0.436106 4.3:-67043760 MS.gene94379:CDS
GAGCTCAAGCTTTACTGAGT+TGG 0.439961 4.3:-67042481 MS.gene94379:CDS
GCAAAGATTTGCTTCCAAAC+AGG 0.440169 4.3:+67044336 None:intergenic
GAGAAATGTTCCGCAAAGAT+TGG 0.442111 4.3:-67043719 MS.gene94379:CDS
AGGGTTGATTATGCAAAATC+AGG 0.443775 4.3:-67044636 MS.gene94379:CDS
CTTCCTGTGATGGATATAAC+AGG 0.444787 4.3:-67044435 MS.gene94379:CDS
CATCATCTTCTCACTGATCT+GGG 0.444824 4.3:-67042432 MS.gene94379:CDS
CAAGTTTCACTTCCACATAA+GGG 0.444872 4.3:+67044403 None:intergenic
CTTGTGAATGTTGTGGAGGA+GGG 0.445456 4.3:+67044985 None:intergenic
CTCCGAATTTGTCTTGAGGC+GGG 0.445589 4.3:-67043589 MS.gene94379:CDS
GCAGAAGCAGGAGCAGGAGC+AGG 0.447720 4.3:+67044717 None:intergenic
ATTCTAAGATAATAAAGCTT+AGG 0.448617 4.3:+67043991 None:intergenic
TTCTCCTTAGACTCCACATA+TGG 0.451473 4.3:+67042906 None:intergenic
ATTACCATATGTGGAGTCTA+AGG 0.455668 4.3:-67042910 MS.gene94379:CDS
CTCCTCAAGTGTTTCGAAGA+CGG 0.456677 4.3:+67043520 None:intergenic
TTTCCGGTCTCCAATCTTTG+CGG 0.458718 4.3:+67043709 None:intergenic
GCTTGTGAATGTTGTGGAGG+AGG 0.463112 4.3:+67044984 None:intergenic
CAATTTATAGCAATTATAGT+TGG 0.463673 4.3:-67042383 MS.gene94379:CDS
GAACGAGGAGCTTATGTTTG+TGG 0.463949 4.3:-67043836 MS.gene94379:CDS
CGCGGTCGGGGAGGAAGAAA+CGG 0.464656 4.3:-67043647 MS.gene94379:CDS
TCTTCATGCTGCGTCATCCT+CGG 0.465845 4.3:-67042358 MS.gene94379:CDS
GAGGTATAAAGGAGGGCATA+AGG 0.466959 4.3:-67044526 MS.gene94379:CDS
ATATCAGCAGGTCTTGTAGT+TGG 0.468121 4.3:+67042587 None:intergenic
TTGACACACTGTCCCCTAGA+TGG 0.468348 4.3:-67043360 MS.gene94379:CDS
ACATTGGATATCTCGAACTC+GGG 0.475864 4.3:-67043492 MS.gene94379:CDS
TCTTAATGAAGTGCCGGTTA+GGG 0.476718 4.3:-67044214 MS.gene94379:CDS
ACCCCGCCTCAAGACAAATT+CGG 0.477483 4.3:+67043587 None:intergenic
GGAAAAGCAGAAGCAGGAGC+AGG 0.478862 4.3:+67044711 None:intergenic
GGAAGAAACGGAGAGAAAGA+AGG 0.480058 4.3:-67043635 MS.gene94379:CDS
TCCATGTGAGGTGGATTCCT+TGG 0.486265 4.3:+67042674 None:intergenic
TGCATTAACATAACATTTGG+AGG 0.489849 4.3:+67044612 None:intergenic
TGAGGAGCCAAAGGACTATC+CGG 0.491599 4.3:+67044186 None:intergenic
TATACTGCTCATTCCATCTA+GGG 0.496045 4.3:+67043347 None:intergenic
CTACCTATGAAGGGCAAAGA+TGG 0.497187 4.3:-67043448 MS.gene94379:CDS
CACCACTTGCAGCTAGGTTG+AGG 0.497949 4.3:-67044545 MS.gene94379:CDS
GAGGGTGAGAATTAGGTGTA+GGG 0.500614 4.3:+67045003 None:intergenic
CATGGTCATGGTCATGGTCA+TGG 0.503618 4.3:-67044765 MS.gene94379:CDS
TTGCCAAGTATGGAAACAAA+TGG 0.503643 4.3:-67043402 MS.gene94379:CDS
AATTATGCTTGCTGTTTGGA+TGG 0.504180 4.3:-67044115 MS.gene94379:CDS
TCGCATAATGTCACTACTCT+CGG 0.504638 4.3:-67042867 MS.gene94379:CDS
ACAATTATAATATCCTCAAA+AGG 0.505624 4.3:+67043805 None:intergenic
TTAGTGTTGATTTCTTGTAA+AGG 0.509202 4.3:+67044912 None:intergenic
GGAATTTCCTCATCAGGGTC+AGG 0.510359 4.3:+67044933 None:intergenic
AGATTGAACCAACGAGCATC+CGG 0.511725 4.3:+67043682 None:intergenic
GGAGGGTGAGAATTAGGTGT+AGG 0.513611 4.3:+67045002 None:intergenic
TGTGGTCACTGCTACCATTG+AGG 0.518823 4.3:+67043266 None:intergenic
GCATCAGAATGCCATGCCTC+AGG 0.521107 4.3:+67044069 None:intergenic
CGCATAATGTCACTACTCTC+GGG 0.522301 4.3:-67042866 MS.gene94379:CDS
CTTCATAGACCTAGCGCGGT+CGG 0.522645 4.3:-67043661 MS.gene94379:CDS
CCTTCTCATGGTCATGGTCA+TGG 0.522728 4.3:-67044771 MS.gene94379:CDS
CTCATTCGAACAATATCAGC+AGG 0.525290 4.3:+67042575 None:intergenic
TTTACTTGAAGTTACTGTGA+AGG 0.525641 4.3:-67044286 MS.gene94379:CDS
AGCAAAAGAACTTCCTGTGA+TGG 0.526165 4.3:-67044445 MS.gene94379:CDS
AACTCGGGATACTTAGTGCC+CGG 0.528434 4.3:-67043477 MS.gene94379:CDS
TGTGAGGTGGATTCCTTGGC+CGG 0.528935 4.3:+67042678 None:intergenic
GGAATTACCGGTTCCGGCCA+AGG 0.528999 4.3:-67042691 MS.gene94379:CDS
TTTGACAATCACCACCTCAA+TGG 0.529571 4.3:-67043280 MS.gene94379:CDS
ATAATTGCTATAAATTGGAA+TGG 0.531398 4.3:+67042389 None:intergenic
TCATAGACCTAGCGCGGTCG+GGG 0.532325 4.3:-67043659 MS.gene94379:CDS
TGCCAAGTATGGAAACAAAT+GGG 0.532532 4.3:-67043401 MS.gene94379:CDS
GGCAATTTGCTTCGAAACCG+AGG 0.534396 4.3:+67042341 None:intergenic
TTGAGCTCTTTCGCCTTGAG+TGG 0.534744 4.3:+67042496 None:intergenic
AACATTGGATATCTCGAACT+CGG 0.535580 4.3:-67043493 MS.gene94379:CDS
AAAGGGATGAAGATAAATCA+TGG 0.536402 4.3:-67044141 MS.gene94379:CDS
AACCGTCTTCGAAACACTTG+AGG 0.536418 4.3:-67043522 MS.gene94379:CDS
TCCGAATTTGTCTTGAGGCG+GGG 0.536647 4.3:-67043588 MS.gene94379:CDS
CCTTATGTGGAAGTGAAACT+TGG 0.541605 4.3:-67044402 MS.gene94379:CDS
GTTTGATCTTAATGAAGTGC+CGG 0.542712 4.3:-67044220 MS.gene94379:CDS
TTAGGTTGAAGAACCAAAAG+AGG 0.547365 4.3:+67043169 None:intergenic
CATGGATGCTAGGCTTTCAC+AGG 0.547979 4.3:-67042657 MS.gene94379:CDS
TCCTCAGTGGTATAGATTGG+AGG 0.548476 4.3:-67044169 MS.gene94379:CDS
GCCAAGGAATCCACCTCACA+TGG 0.549034 4.3:-67042675 MS.gene94379:CDS
AAGAAATTAACTGGTACTGA+TGG 0.550550 4.3:+67042320 None:intergenic
TACTGAGTTGGAGAGACTCA+AGG 0.551057 4.3:-67042469 MS.gene94379:CDS
ATCCACCTCACATGGATGCT+AGG 0.551946 4.3:-67042667 MS.gene94379:CDS
AGTTCCACAAGCTTCTGTTA+GGG 0.553072 4.3:-67043923 MS.gene94379:CDS
AGGAAGTCTTGACCCTTATG+TGG 0.554282 4.3:-67044415 MS.gene94379:CDS
GGTAGAGTCCAAACTGTGGT+TGG 0.554358 4.3:-67042527 MS.gene94379:CDS
CTTCCTGTTATATCCATCAC+AGG 0.554956 4.3:+67044432 None:intergenic
GGCTTAACGACATTTGCACT+TGG 0.556646 4.3:-67042823 MS.gene94379:CDS
TCAATGTGTCTAACAGGTAT+CGG 0.558957 4.3:+67043031 None:intergenic
ACAGAAGGAAAAGCAGAAGC+AGG 0.560238 4.3:+67044705 None:intergenic
CCTTGCTGCCACAATCTGCA+TGG 0.563384 4.3:+67042991 None:intergenic
AAAGAATGGAGAGCTGCACT+TGG 0.565426 4.3:-67043137 MS.gene94379:CDS
GAATCCAGAATATGCATTGG+TGG 0.567312 4.3:-67044577 MS.gene94379:CDS
GAAAGCTTCCGGATGCTCGT+TGG 0.567546 4.3:-67043690 MS.gene94379:CDS
CTATCAGGCCATGCAGATTG+TGG 0.567929 4.3:-67042999 MS.gene94379:CDS
CAGCTCCACCACTTGCAGCT+AGG 0.568046 4.3:-67044551 MS.gene94379:CDS
ATCATTGTATCTGATTTGGA+AGG 0.569129 4.3:+67042287 None:intergenic
CATGGTCATGGTCATGGTCA+TGG 0.569951 4.3:-67044753 MS.gene94379:CDS
CATGGTCATGGTCATGGTCA+TGG 0.569951 4.3:-67044759 MS.gene94379:CDS
TACGACAGATTGAGAAGTGT+GGG 0.570803 4.3:-67042551 MS.gene94379:CDS
ACAAGGGTTTCTCAAATGAG+AGG 0.571760 4.3:-67043874 MS.gene94379:CDS
GTTGGAGATTTAGCCACTCA+AGG 0.572360 4.3:-67042509 MS.gene94379:CDS
TCTCCGAATTTGTCTTGAGG+CGG 0.574374 4.3:-67043590 MS.gene94379:CDS
ACAATATTGAAATCTTGGGA+AGG 0.576231 4.3:-67043756 MS.gene94379:CDS
ATTATGCTTGCTGTTTGGAT+GGG 0.582370 4.3:-67044114 MS.gene94379:CDS
CTATACCACTGAGGAGCCAA+AGG 0.584006 4.3:+67044177 None:intergenic
TCATCCAGATGAATTGGATG+AGG 0.584013 4.3:-67042624 MS.gene94379:CDS
TGGTTGGCAGTATCAATTCA+GGG 0.584676 4.3:+67042744 None:intergenic
GATGGAATGAGCAGTATACA+TGG 0.585191 4.3:-67043342 MS.gene94379:CDS
GTAAAGGAATTTCCTCATCA+GGG 0.585924 4.3:+67044928 None:intergenic
CAAGAGTTGAAACTCAAACA+AGG 0.587219 4.3:-67044656 MS.gene94379:CDS
CTGCTGATATTGTTCGAATG+AGG 0.587966 4.3:-67042574 MS.gene94379:CDS
CGGAATTTGCTACCTATGAA+GGG 0.588456 4.3:-67043457 MS.gene94379:CDS
CTTTAACCCTATTTGGAACG+AGG 0.591388 4.3:-67043851 MS.gene94379:CDS
CCATGCAGATTGTGGCAGCA+AGG 0.592875 4.3:-67042991 MS.gene94379:CDS
CCTTCGATCGCGTATTCGAG+AGG 0.593012 4.3:+67044025 None:intergenic
CAATATTGAAATCTTGGGAA+GGG 0.594946 4.3:-67043755 MS.gene94379:CDS
TTTGCACCATGATTAACAGA+AGG 0.595312 4.3:+67044690 None:intergenic
ACTGAGTTGGAGAGACTCAA+GGG 0.596495 4.3:-67042468 MS.gene94379:CDS
TTTGCTTGTGAATGTTGTGG+AGG 0.598761 4.3:+67044981 None:intergenic
AGGGTGAGAATTAGGTGTAG+GGG 0.599423 4.3:+67045004 None:intergenic
CTAACTGTGATCACAGTGCA+TGG 0.599529 4.3:+67043307 None:intergenic
CAAAGATCAGAGAATTGGAA+AGG 0.600718 4.3:-67043245 MS.gene94379:CDS
TATTATAATTGTGACAGTTG+AGG 0.601359 4.3:-67043794 MS.gene94379:CDS
TCAACTGATTCACGTCGAAG+TGG 0.602308 4.3:+67042950 None:intergenic
GTGAAACTTGGTAACTACAA+AGG 0.604614 4.3:-67044390 MS.gene94379:CDS
CCTCTCGAATACGCGATCGA+AGG 0.607582 4.3:-67044025 MS.gene94379:CDS
AGCCTAGCATCCATGTGAGG+TGG 0.607689 4.3:+67042665 None:intergenic
GGGTGAGAATTAGGTGTAGG+GGG 0.611858 4.3:+67045005 None:intergenic
CTCAACCTAGCTGCAAGTGG+TGG 0.612125 4.3:+67044546 None:intergenic
TCATCTCCGAATTTGTCTTG+AGG 0.614427 4.3:-67043593 MS.gene94379:CDS
GCAGAATCCAGAATATGCAT+TGG 0.615456 4.3:-67044580 MS.gene94379:CDS
GTTCCGCAAAGATTGGAGAC+CGG 0.616738 4.3:-67043712 MS.gene94379:CDS
CAATCTGCATGGCCTGATAG+CGG 0.622267 4.3:+67043002 None:intergenic
CGTCTTCGAAACACTTGAGG+AGG 0.625391 4.3:-67043519 MS.gene94379:CDS
GAGAGCTGCACTTGGCTGTG+AGG 0.625943 4.3:-67043129 MS.gene94379:CDS
TACCTCAACCTAGCTGCAAG+TGG 0.626178 4.3:+67044543 None:intergenic
ATTTGAGCCTGACCCTGATG+AGG 0.628701 4.3:-67044940 MS.gene94379:CDS
TAGACCTAGCGCGGTCGGGG+AGG 0.629162 4.3:-67043656 MS.gene94379:CDS
AAGAGTTGAAACTCAAACAA+GGG 0.629617 4.3:-67044655 MS.gene94379:CDS
GTATAAAGGAGGGCATAAGG+TGG 0.637550 4.3:-67044523 MS.gene94379:CDS
AGTTGAGTATATGCTTGATG+TGG 0.638952 4.3:-67042933 MS.gene94379:CDS
AGTGCCGGTTAGGGTTCCGC+CGG 0.639109 4.3:-67044205 MS.gene94379:CDS
CTTGGGAAGGGAGATTATGT+CGG 0.642034 4.3:-67043743 MS.gene94379:CDS
GCTTCTGTTAGGGTTCAGCT+AGG 0.645640 4.3:-67043913 MS.gene94379:CDS
CCATGACCATGACCATGAGA+AGG 0.648996 4.3:+67044771 None:intergenic
GTACGACAGATTGAGAAGTG+TGG 0.649017 4.3:-67042552 MS.gene94379:CDS
GAAGTCAGATGAGATTCACA+AGG 0.656489 4.3:-67043891 MS.gene94379:CDS
CTAGGTTGAGGTATAAAGGA+GGG 0.657817 4.3:-67044533 MS.gene94379:CDS
TTGATGTGGATTACCATATG+TGG 0.664898 4.3:-67042919 MS.gene94379:CDS
GCTAGGTTGAGGTATAAAGG+AGG 0.666305 4.3:-67044534 MS.gene94379:CDS
ATAGTCCTTTGGCTCCTCAG+TGG 0.669744 4.3:-67044182 MS.gene94379:CDS
AAGTCAGATGAGATTCACAA+GGG 0.671394 4.3:-67043890 MS.gene94379:CDS
ACTGATTCACGTCGAAGTGG+CGG 0.671903 4.3:+67042953 None:intergenic
ATGGAATGAGCAGTATACAT+GGG 0.673909 4.3:-67043341 MS.gene94379:CDS
CAATCTTCATAGACCTAGCG+CGG 0.678986 4.3:-67043665 MS.gene94379:CDS
GAATGAGCAGTATACATGGG+AGG 0.691843 4.3:-67043338 MS.gene94379:CDS
GGTCACTGCTACCATTGAGG+TGG 0.693069 4.3:+67043269 None:intergenic
ATACTGCTCATTCCATCTAG+GGG 0.694930 4.3:+67043348 None:intergenic
TCAAGAACAAGACATGAACA+AGG 0.696192 4.3:+67042780 None:intergenic
GACAGATTGAGAAGTGTGGG+AGG 0.712782 4.3:-67042548 MS.gene94379:CDS
AATCAACACTAACATAAACG+TGG 0.721111 4.3:-67044901 MS.gene94379:CDS
TGAACCCTAACAGAAGCTTG+TGG 0.729603 4.3:+67043919 None:intergenic
GGAGCCAAAGGACTATCCGG+CGG 0.738578 4.3:+67044189 None:intergenic
TCCTCCAATCTATACCACTG+AGG 0.743340 4.3:+67044168 None:intergenic
GAAAGCCTAGCATCCATGTG+AGG 0.756739 4.3:+67042662 None:intergenic
GGGAGGTAGAGTCCAAACTG+TGG 0.795354 4.3:-67042531 MS.gene94379:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAATTATAATATCCTCAAA+AGG + chr4.3:67043519-67043538 None:intergenic 20.0%
!! ATAATTGCTATAAATTGGAA+TGG + chr4.3:67044935-67044954 None:intergenic 20.0%
!! CAACTATAATTGCTATAAAT+TGG + chr4.3:67044940-67044959 None:intergenic 20.0%
!! CAATTTATAGCAATTATAGT+TGG - chr4.3:67044938-67044957 MS.gene94379:CDS 20.0%
!!! ATTCTAAGATAATAAAGCTT+AGG + chr4.3:67043333-67043352 None:intergenic 20.0%
! AACAAGTAAAGAAAAATGGT+TGG + chr4.3:67044596-67044615 None:intergenic 25.0%
! AATCTCTTGAAGAAATTAAC+TGG + chr4.3:67045013-67045032 None:intergenic 25.0%
! ATAGATTGGAGGATAAAAAA+GGG - chr4.3:67043163-67043182 MS.gene94379:CDS 25.0%
! ATCTGCATTAACATAACATT+TGG + chr4.3:67042715-67042734 None:intergenic 25.0%
! CACAAACAAGTAAAGAAAAA+TGG + chr4.3:67044600-67044619 None:intergenic 25.0%
! CCTAACAATATTGAAATCTT+GGG - chr4.3:67043561-67043580 MS.gene94379:CDS 25.0%
! TATAGATTGGAGGATAAAAA+AGG - chr4.3:67043162-67043181 MS.gene94379:CDS 25.0%
! TATTATAATTGTGACAGTTG+AGG - chr4.3:67043527-67043546 MS.gene94379:CDS 25.0%
! TCCTAACAATATTGAAATCT+TGG - chr4.3:67043560-67043579 MS.gene94379:CDS 25.0%
! TTCACATACAAAAAATGCAT+TGG + chr4.3:67042847-67042866 None:intergenic 25.0%
! TTCTTTACTTGTTTGTGATT+GGG - chr4.3:67044603-67044622 MS.gene94379:CDS 25.0%
! TTTCTTTACTTGTTTGTGAT+TGG - chr4.3:67044602-67044621 MS.gene94379:CDS 25.0%
!! ATCAGTAAAGATGATTTTGT+TGG - chr4.3:67043069-67043088 MS.gene94379:CDS 25.0%
!! TACTCATTATTATCCTCTTT+TGG - chr4.3:67044139-67044158 MS.gene94379:CDS 25.0%
!!! TTAGTGTTGATTTCTTGTAA+AGG + chr4.3:67042412-67042431 None:intergenic 25.0%
!!! TTTTTCTTTTTCAGTTCCAA+TGG + chr4.3:67042530-67042549 None:intergenic 25.0%
AAAGGGATGAAGATAAATCA+TGG - chr4.3:67043180-67043199 MS.gene94379:CDS 30.0%
AAGAGTTGAAACTCAAACAA+GGG - chr4.3:67042666-67042685 MS.gene94379:CDS 30.0%
AATCAACACTAACATAAACG+TGG - chr4.3:67042420-67042439 MS.gene94379:CDS 30.0%
ACAATATTGAAATCTTGGGA+AGG - chr4.3:67043565-67043584 MS.gene94379:CDS 30.0%
CAATATTGAAATCTTGGGAA+GGG - chr4.3:67043566-67043585 MS.gene94379:CDS 30.0%
CCCAAGATTTCAATATTGTT+AGG + chr4.3:67043564-67043583 None:intergenic 30.0%
GAAAAAGAAAAACCTTCTCA+TGG - chr4.3:67042538-67042557 MS.gene94379:CDS 30.0%
TCAGATCATTGTATCTGATT+TGG + chr4.3:67045041-67045060 None:intergenic 30.0%
TGACATTATGCGATGAAAAT+TGG + chr4.3:67044447-67044466 None:intergenic 30.0%
TGCATTAACATAACATTTGG+AGG + chr4.3:67042712-67042731 None:intergenic 30.0%
TTTACTTGAAGTTACTGTGA+AGG - chr4.3:67043035-67043054 MS.gene94379:CDS 30.0%
! AAGAAATTAACTGGTACTGA+TGG + chr4.3:67045004-67045023 None:intergenic 30.0%
! GATTTGGTTACTCATGATAA+AGG - chr4.3:67043372-67043391 MS.gene94379:CDS 30.0%
! GGTTGAACATAATGCATTTT+GGG + chr4.3:67044272-67044291 None:intergenic 30.0%
! GTAAAGATGATTTTGTTGGT+AGG - chr4.3:67043073-67043092 MS.gene94379:CDS 30.0%
! GTTAGAACTTTTCATTCCAT+TGG - chr4.3:67042511-67042530 MS.gene94379:CDS 30.0%
!! ATCATTGTATCTGATTTGGA+AGG + chr4.3:67045037-67045056 None:intergenic 30.0%
!! CCTAATGGGTTAAAAAAGAA+TGG - chr4.3:67044170-67044189 MS.gene94379:CDS 30.0%
!!! CCATTCTTTTTTAACCCATT+AGG + chr4.3:67044173-67044192 None:intergenic 30.0%
!!! TTTTGGTTCTTCAACCTAAT+GGG - chr4.3:67044156-67044175 MS.gene94379:CDS 30.0%
AACATTGGATATCTCGAACT+CGG - chr4.3:67043828-67043847 MS.gene94379:CDS 35.0%
AACCCATTTGTTTCCATACT+TGG + chr4.3:67043925-67043944 None:intergenic 35.0%
AAGTCAGATGAGATTCACAA+GGG - chr4.3:67043431-67043450 MS.gene94379:CDS 35.0%
AATTCCTCATCCAATTCATC+TGG + chr4.3:67044704-67044723 None:intergenic 35.0%
ACTTGTTTGTGATTGGGATT+TGG - chr4.3:67044609-67044628 MS.gene94379:CDS 35.0%
AGTGATTGAAGCTCAAGATT+TGG - chr4.3:67043356-67043375 MS.gene94379:CDS 35.0%
AGTTGAGTATATGCTTGATG+TGG - chr4.3:67044388-67044407 MS.gene94379:CDS 35.0%
ATAAGAATCAGCATCCTGTT+TGG - chr4.3:67042971-67042990 MS.gene94379:CDS 35.0%
ATGGAATGAGCAGTATACAT+GGG - chr4.3:67043980-67043999 MS.gene94379:CDS 35.0%
ATTACCATATGTGGAGTCTA+AGG - chr4.3:67044411-67044430 MS.gene94379:CDS 35.0%
CAAAGATCAGAGAATTGGAA+AGG - chr4.3:67044076-67044095 MS.gene94379:CDS 35.0%
CAAGAGTTGAAACTCAAACA+AGG - chr4.3:67042665-67042684 MS.gene94379:CDS 35.0%
CAAGTTTCACTTCCACATAA+GGG + chr4.3:67042921-67042940 None:intergenic 35.0%
CATATTCTGGATTCTGCTTT+GGG + chr4.3:67042738-67042757 None:intergenic 35.0%
GAACAAGGCAAGTTGTAATT+GGG + chr4.3:67044529-67044548 None:intergenic 35.0%
GAATTGGAAAGGTGAGAATA+AGG - chr4.3:67044087-67044106 MS.gene94379:CDS 35.0%
GTAAAGGAATTTCCTCATCA+GGG + chr4.3:67042396-67042415 None:intergenic 35.0%
GTTTGATCTTAATGAAGTGC+CGG - chr4.3:67043101-67043120 MS.gene94379:CDS 35.0%
TACCTGTTAGACACATTGAT+TGG - chr4.3:67044294-67044313 MS.gene94379:CDS 35.0%
TATACTGCTCATTCCATCTA+GGG + chr4.3:67043977-67043996 None:intergenic 35.0%
TCAAGAACAAGACATGAACA+AGG + chr4.3:67044544-67044563 None:intergenic 35.0%
TCAATGTGTCTAACAGGTAT+CGG + chr4.3:67044293-67044312 None:intergenic 35.0%
TGAACAAGGCAAGTTGTAAT+TGG + chr4.3:67044530-67044549 None:intergenic 35.0%
TGCCAAGTATGGAAACAAAT+GGG - chr4.3:67043920-67043939 MS.gene94379:CDS 35.0%
TGTAAAGGAATTTCCTCATC+AGG + chr4.3:67042397-67042416 None:intergenic 35.0%
TTCCAATTCTCTGATCTTTG+TGG + chr4.3:67044076-67044095 None:intergenic 35.0%
TTGCCAAGTATGGAAACAAA+TGG - chr4.3:67043919-67043938 MS.gene94379:CDS 35.0%
TTTGCACCATGATTAACAGA+AGG + chr4.3:67042634-67042653 None:intergenic 35.0%
! AGGGTTGATTATGCAAAATC+AGG - chr4.3:67042685-67042704 MS.gene94379:CDS 35.0%
! CGGTTGAACATAATGCATTT+TGG + chr4.3:67044273-67044292 None:intergenic 35.0%
! CTTGTTTGAGTTTCAACTCT+TGG + chr4.3:67042667-67042686 None:intergenic 35.0%
! GCTTTTCCTTCTGTTAATCA+TGG - chr4.3:67042625-67042644 MS.gene94379:CDS 35.0%
! GTGAAACTTGGTAACTACAA+AGG - chr4.3:67042931-67042950 MS.gene94379:CDS 35.0%
! GTTTTACTGCTGTGTGTAAA+TGG - chr4.3:67044477-67044496 MS.gene94379:CDS 35.0%
! GTTTTTGCTTGTGAATGTTG+TGG + chr4.3:67042346-67042365 None:intergenic 35.0%
! TGATTGGGATTTGGAATTAC+CGG - chr4.3:67044618-67044637 MS.gene94379:CDS 35.0%
! TTGATGTGGATTACCATATG+TGG - chr4.3:67044402-67044421 MS.gene94379:CDS 35.0%
!! AATTATGCTTGCTGTTTGGA+TGG - chr4.3:67043206-67043225 MS.gene94379:CDS 35.0%
!! ATTATGCTTGCTGTTTGGAT+GGG - chr4.3:67043207-67043226 MS.gene94379:CDS 35.0%
!! GTGAAATTATGCTTGCTGTT+TGG - chr4.3:67043202-67043221 MS.gene94379:CDS 35.0%
!! TAATGCATTTTGGGAAGCAA+AGG + chr4.3:67044263-67044282 None:intergenic 35.0%
!! TTAGGTTGAAGAACCAAAAG+AGG + chr4.3:67044155-67044174 None:intergenic 35.0%
!!! CTTTTGGTTCTTCAACCTAA+TGG - chr4.3:67044155-67044174 MS.gene94379:CDS 35.0%
ACAAGGGTTTCTCAAATGAG+AGG - chr4.3:67043447-67043466 MS.gene94379:CDS 40.0%
ACATTGGATATCTCGAACTC+GGG - chr4.3:67043829-67043848 MS.gene94379:CDS 40.0%
AGCAAAAGAACTTCCTGTGA+TGG - chr4.3:67042876-67042895 MS.gene94379:CDS 40.0%
AGCCAATCAATGTGTCTAAC+AGG + chr4.3:67044299-67044318 None:intergenic 40.0%
AGCTTGTCATCCAGATGAAT+TGG - chr4.3:67044691-67044710 MS.gene94379:CDS 40.0%
AGTTCCACAAGCTTCTGTTA+GGG - chr4.3:67043398-67043417 MS.gene94379:CDS 40.0%
ATAAGCTCCTCGTTCCAAAT+AGG + chr4.3:67043480-67043499 None:intergenic 40.0%
ATACTGCTCATTCCATCTAG+GGG + chr4.3:67043976-67043995 None:intergenic 40.0%
ATGGTTGGCAGTATCAATTC+AGG + chr4.3:67044581-67044600 None:intergenic 40.0%
CACTTGAGGAGGAAAAACAT+TGG - chr4.3:67043813-67043832 MS.gene94379:CDS 40.0%
CATCATCTTCTCACTGATCT+GGG - chr4.3:67044889-67044908 MS.gene94379:CDS 40.0%
CCAAGTTTCACTTCCACATA+AGG + chr4.3:67042922-67042941 None:intergenic 40.0%
CCTTATGTGGAAGTGAAACT+TGG - chr4.3:67042919-67042938 MS.gene94379:CDS 40.0%
CCTTCATAGGTAGCAAATTC+CGG + chr4.3:67043866-67043885 None:intergenic 40.0%
CTAAATCTCCAACCACAGTT+TGG + chr4.3:67044805-67044824 None:intergenic 40.0%
CTCATTCGAACAATATCAGC+AGG + chr4.3:67044749-67044768 None:intergenic 40.0%
CTGCTGATATTGTTCGAATG+AGG - chr4.3:67044747-67044766 MS.gene94379:CDS 40.0%
CTTCATAGGTAGCAAATTCC+GGG + chr4.3:67043865-67043884 None:intergenic 40.0%
CTTCCTGTTATATCCATCAC+AGG + chr4.3:67042892-67042911 None:intergenic 40.0%
GAAAAACCTTCTCATGGTCA+TGG - chr4.3:67042544-67042563 MS.gene94379:CDS 40.0%
GAAGTCAGATGAGATTCACA+AGG - chr4.3:67043430-67043449 MS.gene94379:CDS 40.0%
GAATCCAGAATATGCATTGG+TGG - chr4.3:67042744-67042763 MS.gene94379:CDS 40.0%
GACCACAAAGATCAGAGAAT+TGG - chr4.3:67044071-67044090 MS.gene94379:CDS 40.0%
GAGAAATGTTCCGCAAAGAT+TGG - chr4.3:67043602-67043621 MS.gene94379:CDS 40.0%
GATGGAATGAGCAGTATACA+TGG - chr4.3:67043979-67043998 MS.gene94379:CDS 40.0%
GCAGAATCCAGAATATGCAT+TGG - chr4.3:67042741-67042760 MS.gene94379:CDS 40.0%
GCATATTCTGGATTCTGCTT+TGG + chr4.3:67042739-67042758 None:intergenic 40.0%
GTATACTGCTCATTCCATCT+AGG + chr4.3:67043978-67043997 None:intergenic 40.0%
GTGACAGTTGAGGACAAATT+TGG - chr4.3:67043537-67043556 MS.gene94379:CDS 40.0%
GTTTCCACCAATGCATATTC+TGG + chr4.3:67042751-67042770 None:intergenic 40.0%
TAAGCTCCTCGTTCCAAATA+GGG + chr4.3:67043479-67043498 None:intergenic 40.0%
TCATCATCTTCTCACTGATC+TGG - chr4.3:67044888-67044907 MS.gene94379:CDS 40.0%
TCATCCAGATGAATTGGATG+AGG - chr4.3:67044697-67044716 MS.gene94379:CDS 40.0%
TCATCTCCGAATTTGTCTTG+AGG - chr4.3:67043728-67043747 MS.gene94379:CDS 40.0%
TCGCATAATGTCACTACTCT+CGG - chr4.3:67044454-67044473 MS.gene94379:CDS 40.0%
TGGTTGGCAGTATCAATTCA+GGG + chr4.3:67044580-67044599 None:intergenic 40.0%
TTCTCCTTAGACTCCACATA+TGG + chr4.3:67044418-67044437 None:intergenic 40.0%
TTGCACAGCTTGGGTTAATA+TGG - chr4.3:67044220-67044239 MS.gene94379:CDS 40.0%
TTTGACAATCACCACCTCAA+TGG - chr4.3:67044041-67044060 MS.gene94379:CDS 40.0%
TTTGCTTGTGAATGTTGTGG+AGG + chr4.3:67042343-67042362 None:intergenic 40.0%
! ATATCAGCAGGTCTTGTAGT+TGG + chr4.3:67044737-67044756 None:intergenic 40.0%
! CTAGGTTGAGGTATAAAGGA+GGG - chr4.3:67042788-67042807 MS.gene94379:CDS 40.0%
! CTTTAACCCTATTTGGAACG+AGG - chr4.3:67043470-67043489 MS.gene94379:CDS 40.0%
! GCAAAGATTTGCTTCCAAAC+AGG + chr4.3:67042988-67043007 None:intergenic 40.0%
! GCAAATCTTTGCGTTTTCGA+AGG - chr4.3:67042996-67043015 MS.gene94379:CDS 40.0%
! TACGACAGATTGAGAAGTGT+GGG - chr4.3:67044770-67044789 MS.gene94379:CDS 40.0%
! TAGGGGGTGTATTAGCAAAA+GGG + chr4.3:67042303-67042322 None:intergenic 40.0%
! TGAGAGGCTTTAACCCTATT+TGG - chr4.3:67043463-67043482 MS.gene94379:CDS 40.0%
!! ATCTTAATGAAGTGCCGGTT+AGG - chr4.3:67043106-67043125 MS.gene94379:CDS 40.0%
!! CGGAATTTGCTACCTATGAA+GGG - chr4.3:67043864-67043883 MS.gene94379:CDS 40.0%
!! CTTCCTGTGATGGATATAAC+AGG - chr4.3:67042886-67042905 MS.gene94379:CDS 40.0%
!! TCTTAATGAAGTGCCGGTTA+GGG - chr4.3:67043107-67043126 MS.gene94379:CDS 40.0%
AAAGAATGGAGAGCTGCACT+TGG - chr4.3:67044184-67044203 MS.gene94379:CDS 45.0%
AACCGTCTTCGAAACACTTG+AGG - chr4.3:67043799-67043818 MS.gene94379:CDS 45.0%
ACAGAAGGAAAAGCAGAAGC+AGG + chr4.3:67042619-67042638 None:intergenic 45.0%
AGATTGAACCAACGAGCATC+CGG + chr4.3:67043642-67043661 None:intergenic 45.0%
AGGAAGTCTTGACCCTTATG+TGG - chr4.3:67042906-67042925 MS.gene94379:CDS 45.0%
AGGGTGAGAATTAGGTGTAG+GGG + chr4.3:67042320-67042339 None:intergenic 45.0%
CAATCTTCATAGACCTAGCG+CGG - chr4.3:67043656-67043675 MS.gene94379:CDS 45.0%
CGCATAATGTCACTACTCTC+GGG - chr4.3:67044455-67044474 MS.gene94379:CDS 45.0%
CTAACTGTGATCACAGTGCA+TGG + chr4.3:67044017-67044036 None:intergenic 45.0%
CTACCATCTTTGCCCTTCAT+AGG + chr4.3:67043879-67043898 None:intergenic 45.0%
CTACCTATGAAGGGCAAAGA+TGG - chr4.3:67043873-67043892 MS.gene94379:CDS 45.0%
CTCCTCAAGTGTTTCGAAGA+CGG + chr4.3:67043804-67043823 None:intergenic 45.0%
CTTGGGAAGGGAGATTATGT+CGG - chr4.3:67043578-67043597 MS.gene94379:CDS 45.0%
CTTGTGAATGTTGTGGAGGA+GGG + chr4.3:67042339-67042358 None:intergenic 45.0%
GAACGAGGAGCTTATGTTTG+TGG - chr4.3:67043485-67043504 MS.gene94379:CDS 45.0%
GAATGAGCAGTATACATGGG+AGG - chr4.3:67043983-67044002 MS.gene94379:CDS 45.0%
GAGCTCAAGCTTTACTGAGT+TGG - chr4.3:67044840-67044859 MS.gene94379:CDS 45.0%
GAGGGTGAGAATTAGGTGTA+GGG + chr4.3:67042321-67042340 None:intergenic 45.0%
GAGGTTTACTTGCACAGCTT+GGG - chr4.3:67044211-67044230 MS.gene94379:CDS 45.0%
GAGTTCCACAAGCTTCTGTT+AGG - chr4.3:67043397-67043416 MS.gene94379:CDS 45.0%
GCATACTGTGTTGCCAAGTA+TGG - chr4.3:67043909-67043928 MS.gene94379:CDS 45.0%
GGAAGAAACGGAGAGAAAGA+AGG - chr4.3:67043686-67043705 MS.gene94379:CDS 45.0%
GGCTTAACGACATTTGCACT+TGG - chr4.3:67044498-67044517 MS.gene94379:CDS 45.0%
GTACGACAGATTGAGAAGTG+TGG - chr4.3:67044769-67044788 MS.gene94379:CDS 45.0%
GTTGGAGATTTAGCCACTCA+AGG - chr4.3:67044812-67044831 MS.gene94379:CDS 45.0%
TCCTCAGTGGTATAGATTGG+AGG - chr4.3:67043152-67043171 MS.gene94379:CDS 45.0%
TCCTCCAATCTATACCACTG+AGG + chr4.3:67043156-67043175 None:intergenic 45.0%
TCTCCGAATTTGTCTTGAGG+CGG - chr4.3:67043731-67043750 MS.gene94379:CDS 45.0%
TGAACCCTAACAGAAGCTTG+TGG + chr4.3:67043405-67043424 None:intergenic 45.0%
TGAGGTTTACTTGCACAGCT+TGG - chr4.3:67044210-67044229 MS.gene94379:CDS 45.0%
TTTCCGGTCTCCAATCTTTG+CGG + chr4.3:67043615-67043634 None:intergenic 45.0%
! ACTGAGTTGGAGAGACTCAA+GGG - chr4.3:67044853-67044872 MS.gene94379:CDS 45.0%
! AGCTGATGAGTCTTTTCCTG+AGG - chr4.3:67043236-67043255 MS.gene94379:CDS 45.0%
! ATGAGTCTTTTCCTGAGGCA+TGG - chr4.3:67043241-67043260 MS.gene94379:CDS 45.0%
! GAGGTATAAAGGAGGGCATA+AGG - chr4.3:67042795-67042814 MS.gene94379:CDS 45.0%
! GCAGCTAGGTTGAGGTATAA+AGG - chr4.3:67042784-67042803 MS.gene94379:CDS 45.0%
! GCTAGGTTGAGGTATAAAGG+AGG - chr4.3:67042787-67042806 MS.gene94379:CDS 45.0%
! GTAGGGGGTGTATTAGCAAA+AGG + chr4.3:67042304-67042323 None:intergenic 45.0%
! GTATAAAGGAGGGCATAAGG+TGG - chr4.3:67042798-67042817 MS.gene94379:CDS 45.0%
! TACTGAGTTGGAGAGACTCA+AGG - chr4.3:67044852-67044871 MS.gene94379:CDS 45.0%
! TCAACTGATTCACGTCGAAG+TGG + chr4.3:67044374-67044393 None:intergenic 45.0%
! TCTTTGCGTTTTCGAAGGAG+AGG - chr4.3:67043001-67043020 MS.gene94379:CDS 45.0%
!! CCGGAATTTGCTACCTATGA+AGG - chr4.3:67043863-67043882 MS.gene94379:CDS 45.0%
!! GGATTTGGAATTACCGGTTC+CGG - chr4.3:67044624-67044643 MS.gene94379:CDS 45.0%
AACTCGGGATACTTAGTGCC+CGG - chr4.3:67043844-67043863 MS.gene94379:CDS 50.0%
ACCCCGCCTCAAGACAAATT+CGG + chr4.3:67043737-67043756 None:intergenic 50.0%
ATCCACCTCACATGGATGCT+AGG - chr4.3:67044654-67044673 MS.gene94379:CDS 50.0%
ATTGGAGACCGGAAAGCTTC+CGG - chr4.3:67043620-67043639 MS.gene94379:CDS 50.0%
ATTTGAGCCTGACCCTGATG+AGG - chr4.3:67042381-67042400 MS.gene94379:CDS 50.0%
CAATCTGCATGGCCTGATAG+CGG + chr4.3:67044322-67044341 None:intergenic 50.0%
CATGGATGCTAGGCTTTCAC+AGG - chr4.3:67044664-67044683 MS.gene94379:CDS 50.0%
CATGGTCATGGTCATGGTCA+TGG - chr4.3:67042556-67042575 MS.gene94379:CDS 50.0%
CCATGACCATGACCATGAGA+AGG + chr4.3:67042553-67042572 None:intergenic 50.0%
CCTTCTCATGGTCATGGTCA+TGG - chr4.3:67042550-67042569 MS.gene94379:CDS 50.0%
CGTCTTCGAAACACTTGAGG+AGG - chr4.3:67043802-67043821 MS.gene94379:CDS 50.0%
CTATACCACTGAGGAGCCAA+AGG + chr4.3:67043147-67043166 None:intergenic 50.0%
CTATCAGGCCATGCAGATTG+TGG - chr4.3:67044322-67044341 MS.gene94379:CDS 50.0%
CTCCGAATTTGTCTTGAGGC+GGG - chr4.3:67043732-67043751 MS.gene94379:CDS 50.0%
GAAAGCCTAGCATCCATGTG+AGG + chr4.3:67044662-67044681 None:intergenic 50.0%
GCTTCTGTTAGGGTTCAGCT+AGG - chr4.3:67043408-67043427 MS.gene94379:CDS 50.0%
GCTTGTGAATGTTGTGGAGG+AGG + chr4.3:67042340-67042359 None:intergenic 50.0%
GGAATTTCCTCATCAGGGTC+AGG + chr4.3:67042391-67042410 None:intergenic 50.0%
GGAGGGTGAGAATTAGGTGT+AGG + chr4.3:67042322-67042341 None:intergenic 50.0%
GGCTCCTCAGTGGTATAGAT+TGG - chr4.3:67043149-67043168 MS.gene94379:CDS 50.0%
GGGTGAGAATTAGGTGTAGG+GGG + chr4.3:67042319-67042338 None:intergenic 50.0%
GGTAGAGTCCAAACTGTGGT+TGG - chr4.3:67044794-67044813 MS.gene94379:CDS 50.0%
GTTCCGCAAAGATTGGAGAC+CGG - chr4.3:67043609-67043628 MS.gene94379:CDS 50.0%
TACCTCAACCTAGCTGCAAG+TGG + chr4.3:67042781-67042800 None:intergenic 50.0%
TCCGAATTTGTCTTGAGGCG+GGG - chr4.3:67043733-67043752 MS.gene94379:CDS 50.0%
TCTTCATGCTGCGTCATCCT+CGG - chr4.3:67044963-67044982 MS.gene94379:CDS 50.0%
TGAGGAGCCAAAGGACTATC+CGG + chr4.3:67043138-67043157 None:intergenic 50.0%
TGTGGAGGAGGGTGAGAATT+AGG + chr4.3:67042328-67042347 None:intergenic 50.0%
TGTGGTCACTGCTACCATTG+AGG + chr4.3:67044058-67044077 None:intergenic 50.0%
TTGACACACTGTCCCCTAGA+TGG - chr4.3:67043961-67043980 MS.gene94379:CDS 50.0%
TTGAGCTCTTTCGCCTTGAG+TGG + chr4.3:67044828-67044847 None:intergenic 50.0%
! ACTGATTCACGTCGAAGTGG+CGG + chr4.3:67044371-67044390 None:intergenic 50.0%
! ATAGTCCTTTGGCTCCTCAG+TGG - chr4.3:67043139-67043158 MS.gene94379:CDS 50.0%
! CATTGATTGGCTCCGCTATC+AGG - chr4.3:67044307-67044326 MS.gene94379:CDS 50.0%
! GACAGATTGAGAAGTGTGGG+AGG - chr4.3:67044773-67044792 MS.gene94379:CDS 50.0%
! GGCAATTTGCTTCGAAACCG+AGG + chr4.3:67044983-67045002 None:intergenic 50.0%
! TCCATGTGAGGTGGATTCCT+TGG + chr4.3:67044650-67044669 None:intergenic 50.0%
! TGTGGCAGCTGAACCTTTTG+AGG - chr4.3:67043503-67043522 MS.gene94379:CDS 50.0%
ACGAGCATCCGGAAGCTTTC+CGG + chr4.3:67043631-67043650 None:intergenic 55.0%
AGCCTAGCATCCATGTGAGG+TGG + chr4.3:67044659-67044678 None:intergenic 55.0%
CACCACTTGCAGCTAGGTTG+AGG - chr4.3:67042776-67042795 MS.gene94379:CDS 55.0%
CCATGCAGATTGTGGCAGCA+AGG - chr4.3:67044330-67044349 MS.gene94379:CDS 55.0%
CCTCTCGAATACGCGATCGA+AGG - chr4.3:67043296-67043315 MS.gene94379:CDS 55.0%
CCTTCGATCGCGTATTCGAG+AGG + chr4.3:67043299-67043318 None:intergenic 55.0%
CCTTGCTGCCACAATCTGCA+TGG + chr4.3:67044333-67044352 None:intergenic 55.0%
CTCAACCTAGCTGCAAGTGG+TGG + chr4.3:67042778-67042797 None:intergenic 55.0%
CTTCATAGACCTAGCGCGGT+CGG - chr4.3:67043660-67043679 MS.gene94379:CDS 55.0%
GAAAGCTTCCGGATGCTCGT+TGG - chr4.3:67043631-67043650 MS.gene94379:CDS 55.0%
GCATCAGAATGCCATGCCTC+AGG + chr4.3:67043255-67043274 None:intergenic 55.0%
GCCAAGGAATCCACCTCACA+TGG - chr4.3:67044646-67044665 MS.gene94379:CDS 55.0%
GGAAAAGCAGAAGCAGGAGC+AGG + chr4.3:67042613-67042632 None:intergenic 55.0%
GGGAGGTAGAGTCCAAACTG+TGG - chr4.3:67044790-67044809 MS.gene94379:CDS 55.0%
GGTCACTGCTACCATTGAGG+TGG + chr4.3:67044055-67044074 None:intergenic 55.0%
TTCATAGACCTAGCGCGGTC+GGG - chr4.3:67043661-67043680 MS.gene94379:CDS 55.0%
! TGTGAGGTGGATTCCTTGGC+CGG + chr4.3:67044646-67044665 None:intergenic 55.0%
CAGCTCCACCACTTGCAGCT+AGG - chr4.3:67042770-67042789 MS.gene94379:CDS 60.0%
CTATCCGGCGGAACCCTAAC+CGG + chr4.3:67043123-67043142 None:intergenic 60.0%
GAGAGCTGCACTTGGCTGTG+AGG - chr4.3:67044192-67044211 MS.gene94379:CDS 60.0%
GGAGCCAAAGGACTATCCGG+CGG + chr4.3:67043135-67043154 None:intergenic 60.0%
GGTTCCGCCGGATAGTCCTT+TGG - chr4.3:67043128-67043147 MS.gene94379:CDS 60.0%
GTGGATTCCTTGGCCGGAAC+CGG + chr4.3:67044640-67044659 None:intergenic 60.0%
TCATAGACCTAGCGCGGTCG+GGG - chr4.3:67043662-67043681 MS.gene94379:CDS 60.0%
!! GGAATTACCGGTTCCGGCCA+AGG - chr4.3:67044630-67044649 MS.gene94379:CDS 60.0%
CGCGGTCGGGGAGGAAGAAA+CGG - chr4.3:67043674-67043693 MS.gene94379:CDS 65.0%
GCAGAAGCAGGAGCAGGAGC+AGG + chr4.3:67042607-67042626 None:intergenic 65.0%
!! AGTGCCGGTTAGGGTTCCGC+CGG - chr4.3:67043116-67043135 MS.gene94379:CDS 65.0%
GCAGGAGCAGGAGCAGGAGC+AGG + chr4.3:67042595-67042614 None:intergenic 70.0%
TAGACCTAGCGCGGTCGGGG+AGG - chr4.3:67043665-67043684 MS.gene94379:CDS 70.0%
TCTTCCTCCCCGACCGCGCT+AGG + chr4.3:67043672-67043691 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 67042283 67045060 67042283 ID=MS.gene94379
chr4.3 mRNA 67042283 67045060 67042283 ID=MS.gene94379.t1;Parent=MS.gene94379
chr4.3 exon 67042283 67045060 67042283 ID=MS.gene94379.t1.exon1;Parent=MS.gene94379.t1
chr4.3 CDS 67042283 67045060 67042283 ID=cds.MS.gene94379.t1;Parent=MS.gene94379.t1
Gene Sequence

>MS.gene94379

ATGTTTGCTTTTCATGACCCTTTTGCTAATACACCCCCTACACCTAATTCTCACCCTCCTCCACAACATTCACAAGCAAAAACATCATCTTTTGAATCATTTGAGCCTGACCCTGATGAGGAAATTCCTTTACAAGAAATCAACACTAACATAAACGTGGAAGATGAAGAAAGCATATTTAGTGATAGTGAGAAAAAGAAGAAAAATAAGAAGAAGAAAGAAAAAGAAGTTAGAACTTTTCATTCCATTGGAACTGAAAAAGAAAAACCTTCTCATGGTCATGGTCATGGTCATGGTCATGGTCATGGTCATGCTCCTGCTCCTGCTCCTGCTCCTGCTTCTGCTTTTCCTTCTGTTAATCATGGTGCAAATTTTGCAACACCAAGAGTTGAAACTCAAACAAGGGTTGATTATGCAAAATCAGGACCTCCAAATGTTATGTTAATGCAGATCCCAAAGCAGAATCCAGAATATGCATTGGTGGAAACAGCTCCACCACTTGCAGCTAGGTTGAGGTATAAAGGAGGGCATAAGGTGGAAACTACTTATGATTTAGTTGAACCAATGCATTTTTTGTATGTGAATGTTGTGAAAGCAAAAGAACTTCCTGTGATGGATATAACAGGAAGTCTTGACCCTTATGTGGAAGTGAAACTTGGTAACTACAAAGGTGTTACAAAGCATTTAGATAAGAATCAGCATCCTGTTTGGAAGCAAATCTTTGCGTTTTCGAAGGAGAGGTTGCAATCAAATTTACTTGAAGTTACTGTGAAGGATAAAGATCTCATCAGTAAAGATGATTTTGTTGGTAGGATTATGTTTGATCTTAATGAAGTGCCGGTTAGGGTTCCGCCGGATAGTCCTTTGGCTCCTCAGTGGTATAGATTGGAGGATAAAAAAGGGATGAAGATAAATCATGGTGAAATTATGCTTGCTGTTTGGATGGGAACACAAGCTGATGAGTCTTTTCCTGAGGCATGGCATTCTGATGCTCATAATGTTAGTCACGCGAACCTCTCGAATACGCGATCGAAGGTGTATTTTACTCCTAAGCTTTATTATCTTAGAATTGAAGTGATTGAAGCTCAAGATTTGGTTACTCATGATAAAGGAAGAGTTCCACAAGCTTCTGTTAGGGTTCAGCTAGGAAGTCAGATGAGATTCACAAGGGTTTCTCAAATGAGAGGCTTTAACCCTATTTGGAACGAGGAGCTTATGTTTGTGGCAGCTGAACCTTTTGAGGATATTATAATTGTGACAGTTGAGGACAAATTTGGTCCTAACAATATTGAAATCTTGGGAAGGGAGATTATGTCGGTGAGAAATGTTCCGCAAAGATTGGAGACCGGAAAGCTTCCGGATGCTCGTTGGTTCAATCTTCATAGACCTAGCGCGGTCGGGGAGGAAGAAACGGAGAGAAAGAAGGAGAAATTCTCGAGTAAGATTCATCTCCGAATTTGTCTTGAGGCGGGGTATCATGTTCTTGATGAGTCAACACATTTCAGCAGTGATCTTCAACCGTCTTCGAAACACTTGAGGAGGAAAAACATTGGATATCTCGAACTCGGGATACTTAGTGCCCGGAATTTGCTACCTATGAAGGGCAAAGATGGTAGAACTACTGATGCATACTGTGTTGCCAAGTATGGAAACAAATGGGTTAGAACAAGAACTCTGCTTGACACACTGTCCCCTAGATGGAATGAGCAGTATACATGGGAGGTTCATGATCCATGCACTGTGATCACAGTTAGTGTTTTTGACAATCACCACCTCAATGGTAGCAGTGACCACAAAGATCAGAGAATTGGAAAGGTGAGAATAAGGTTATCAACTCTTGAAACTGATAGAGTTTATACTCATTATTATCCTCTTTTGGTTCTTCAACCTAATGGGTTAAAAAAGAATGGAGAGCTGCACTTGGCTGTGAGGTTTACTTGCACAGCTTGGGTTAATATGGTAGCTCAATATTCGAGACCTTTGCTTCCCAAAATGCATTATGTTCAACCGATACCTGTTAGACACATTGATTGGCTCCGCTATCAGGCCATGCAGATTGTGGCAGCAAGGCTAGCAAGAGCTGAGCCGCCACTTCGACGTGAATCAGTTGAGTATATGCTTGATGTGGATTACCATATGTGGAGTCTAAGGAGAAGCAAAGCCAATTTTCATCGCATAATGTCACTACTCTCGGGTTTTACTGCTGTGTGTAAATGGCTTAACGACATTTGCACTTGGAGAAACCCAATTACAACTTGCCTTGTTCATGTCTTGTTCTTGATACTTGTTTGCTACCCTGAATTGATACTGCCAACCATTTTTCTTTACTTGTTTGTGATTGGGATTTGGAATTACCGGTTCCGGCCAAGGAATCCACCTCACATGGATGCTAGGCTTTCACAGGCAGAAGCTTGTCATCCAGATGAATTGGATGAGGAATTTGACACTTTTCCAACTACAAGACCTGCTGATATTGTTCGAATGAGGTACGACAGATTGAGAAGTGTGGGAGGTAGAGTCCAAACTGTGGTTGGAGATTTAGCCACTCAAGGCGAAAGAGCTCAAGCTTTACTGAGTTGGAGAGACTCAAGGGCAACAGCTATCTTCATCATCTTCTCACTGATCTGGGCTGTATTCATTTACATCACTCCATTCCAATTTATAGCAATTATAGTTGGTCTCTTCATGCTGCGTCATCCTCGGTTTCGAAGCAAATTGCCATCAGTACCAGTTAATTTCTTCAAGAGATTGCCTTCCAAATCAGATACAATGATCTGA
Protein sequence

>MS.gene94379.t1

MFAFHDPFANTPPTPNSHPPPQHSQAKTSSFESFEPDPDEEIPLQEINTNINVEDEESIFSDSEKKKKNKKKKEKEVRTFHSIGTEKEKPSHGHGHGHGHGHGHAPAPAPAPASAFPSVNHGANFATPRVETQTRVDYAKSGPPNVMLMQIPKQNPEYALVETAPPLAARLRYKGGHKVETTYDLVEPMHFLYVNVVKAKELPVMDITGSLDPYVEVKLGNYKGVTKHLDKNQHPVWKQIFAFSKERLQSNLLEVTVKDKDLISKDDFVGRIMFDLNEVPVRVPPDSPLAPQWYRLEDKKGMKINHGEIMLAVWMGTQADESFPEAWHSDAHNVSHANLSNTRSKVYFTPKLYYLRIEVIEAQDLVTHDKGRVPQASVRVQLGSQMRFTRVSQMRGFNPIWNEELMFVAAEPFEDIIIVTVEDKFGPNNIEILGREIMSVRNVPQRLETGKLPDARWFNLHRPSAVGEEETERKKEKFSSKIHLRICLEAGYHVLDESTHFSSDLQPSSKHLRRKNIGYLELGILSARNLLPMKGKDGRTTDAYCVAKYGNKWVRTRTLLDTLSPRWNEQYTWEVHDPCTVITVSVFDNHHLNGSSDHKDQRIGKVRIRLSTLETDRVYTHYYPLLVLQPNGLKKNGELHLAVRFTCTAWVNMVAQYSRPLLPKMHYVQPIPVRHIDWLRYQAMQIVAARLARAEPPLRRESVEYMLDVDYHMWSLRRSKANFHRIMSLLSGFTAVCKWLNDICTWRNPITTCLVHVLFLILVCYPELILPTIFLYLFVIGIWNYRFRPRNPPHMDARLSQAEACHPDELDEEFDTFPTTRPADIVRMRYDRLRSVGGRVQTVVGDLATQGERAQALLSWRDSRATAIFIIFSLIWAVFIYITPFQFIAIIVGLFMLRHPRFRSKLPSVPVNFFKRLPSKSDTMI