AlfalfaGEDB | MS.gene94593

M. sativa cultivar XinJiangDaYe / MS.gene94593

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046983
PFAM: PF00010.29

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94593.t1	XP_013464840.1	96.5	310	11	0	3	312	4	313	1.50E-152	548.9

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94593.t1	Q0V7X4	54.6	326	121	6	1	312	5	317	1.4e-69	264.6

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94593.t1	A0A072VL86	96.5	310	11	0	3	312	4	313	1.1e-152	548.9

TFs/TRs:

Gene ID	Type	Classification
MS.gene94593.t1	TF	bHLH

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049549	MS.gene94593	0.859275	4.63E-63	-1.69E-46
MS.gene052211	MS.gene94593	0.829006	6.55E-55	-1.69E-46
MS.gene05240	MS.gene94593	0.808401	3.15E-50	-1.69E-46
MS.gene054138	MS.gene94593	0.816997	4.14E-52	-1.69E-46
MS.gene054146	MS.gene94593	0.834167	3.51E-56	-1.69E-46
MS.gene054147	MS.gene94593	0.807315	5.37E-50	-1.69E-46
MS.gene054277	MS.gene94593	0.831498	1.61E-55	-1.69E-46
MS.gene054742	MS.gene94593	0.833782	4.38E-56	-1.69E-46
MS.gene056748	MS.gene94593	0.822037	2.93E-53	-1.69E-46
MS.gene056920	MS.gene94593	0.817457	3.26E-52	-1.69E-46
MS.gene056922	MS.gene94593	0.808018	3.81E-50	-1.69E-46
MS.gene056988	MS.gene94593	0.801589	8.38E-49	-1.69E-46
MS.gene058381	MS.gene94593	0.819031	1.44E-52	-1.69E-46
MS.gene059955	MS.gene94593	0.80851	2.99E-50	-1.69E-46
MS.gene060087	MS.gene94593	0.82505	5.79E-54	-1.69E-46
MS.gene060358	MS.gene94593	0.811201	7.88E-51	-1.69E-46
MS.gene061092	MS.gene94593	0.800606	1.33E-48	-1.69E-46
MS.gene061094	MS.gene94593	0.811126	8.18E-51	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94593.t1	MTR_2g084280	96.452	310	11	0	3	312	4	313	0.0	620
MS.gene94593.t1	MTR_4g057270	64.110	326	94	10	2	312	16	333	1.01e-129	373
MS.gene94593.t1	MTR_8g064700	33.962	159	84	3	124	268	236	387	8.65e-20	89.4
MS.gene94593.t1	MTR_3g104100	31.771	192	110	4	131	308	194	378	5.89e-18	84.0
MS.gene94593.t1	MTR_1g112680	30.233	172	86	4	120	257	302	473	3.84e-17	82.0
MS.gene94593.t1	MTR_3g498695	30.270	185	109	4	88	257	257	436	5.92e-17	81.6
MS.gene94593.t1	MTR_3g498695	30.270	185	109	4	88	257	257	436	6.39e-17	81.3
MS.gene94593.t1	MTR_3g030700	29.744	195	116	4	121	301	185	372	7.51e-17	80.5
MS.gene94593.t1	MTR_2g038040	26.203	187	117	3	131	299	51	234	8.35e-17	78.6
MS.gene94593.t1	MTR_4g097950	30.233	172	94	4	97	256	47	204	3.12e-15	74.3
MS.gene94593.t1	MTR_8g067280	30.864	162	93	5	136	281	466	624	3.47e-15	76.3
MS.gene94593.t1	MTR_2g081040	30.270	185	113	6	131	301	176	358	1.68e-14	73.6
MS.gene94593.t1	MTR_5g030430	30.488	164	91	5	136	281	497	655	2.21e-14	73.9
MS.gene94593.t1	MTR_8g027495	29.605	152	97	4	136	285	462	605	2.68e-14	73.6
MS.gene94593.t1	MTR_7g083900	26.984	189	112	5	93	264	253	432	7.11e-14	72.4
MS.gene94593.t1	MTR_7g083900	26.984	189	112	5	93	264	253	432	7.95e-14	72.0
MS.gene94593.t1	MTR_4g091910	30.357	168	110	4	120	286	37	198	8.24e-14	69.7
MS.gene94593.t1	MTR_7g117670	29.333	150	100	2	136	285	406	549	1.30e-13	71.6
MS.gene94593.t1	MTR_8g024770	28.000	125	77	2	108	219	247	371	7.73e-12	65.9
MS.gene94593.t1	MTR_8g024790	26.374	182	114	5	110	274	258	436	9.98e-12	65.9
MS.gene94593.t1	MTR_4g092700	28.777	139	93	4	134	268	160	296	1.35e-11	64.7
MS.gene94593.t1	MTR_1g019240	32.432	111	64	3	78	184	44	147	3.25e-11	63.2
MS.gene94593.t1	MTR_5g014640	29.323	133	93	1	134	266	156	287	6.00e-11	62.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94593.t1	AT2G28160	52.266	331	121	9	1	312	5	317	4.89e-104	307
MS.gene94593.t1	AT2G28160	51.692	325	120	9	1	306	5	311	9.06e-100	296
MS.gene94593.t1	AT4G29930	35.260	173	107	3	131	303	53	220	4.05e-25	100
MS.gene94593.t1	AT4G29930	35.260	173	104	4	131	303	53	217	4.43e-24	98.2
MS.gene94593.t1	AT4G29930	35.762	151	91	3	131	281	53	197	3.87e-23	95.9
MS.gene94593.t1	AT5G57150	33.333	192	107	6	120	295	40	226	4.27e-23	96.3
MS.gene94593.t1	AT5G57150	34.078	179	99	5	120	282	41	216	1.46e-22	94.0
MS.gene94593.t1	AT5G57150	35.758	165	87	5	120	268	40	201	1.81e-22	94.0
MS.gene94593.t1	AT5G57150	35.758	165	87	5	120	268	41	202	2.11e-22	93.6
MS.gene94593.t1	AT5G57150	35.583	163	90	4	120	268	41	202	6.01e-22	93.2
MS.gene94593.t1	AT4G29930	31.658	199	105	5	131	303	53	246	4.67e-21	90.9
MS.gene94593.t1	AT2G16910	35.404	161	78	4	130	265	312	471	1.22e-20	92.8
MS.gene94593.t1	AT4G29930	31.638	177	92	4	131	281	53	226	5.50e-20	87.8
MS.gene94593.t1	AT4G29930	31.638	177	92	4	131	281	53	226	5.50e-20	87.8
MS.gene94593.t1	AT2G46510	30.000	180	101	6	116	286	371	534	4.25e-17	82.0
MS.gene94593.t1	AT1G01260	33.690	187	101	5	94	279	396	560	5.62e-16	79.0
MS.gene94593.t1	AT1G01260	33.690	187	101	5	94	279	396	560	5.62e-16	79.0
MS.gene94593.t1	AT1G01260	33.690	187	101	5	94	279	396	560	5.62e-16	79.0
MS.gene94593.t1	AT4G29930	37.255	102	49	1	99	200	36	122	1.04e-15	74.3
MS.gene94593.t1	AT4G17880	28.667	150	101	4	136	281	420	567	1.54e-14	74.3
MS.gene94593.t1	AT1G12860	46.970	66	35	0	131	196	266	331	4.04e-13	69.7
MS.gene94593.t1	AT1G12860	46.970	66	35	0	131	196	266	331	4.43e-13	69.7
MS.gene94593.t1	AT3G26744	29.932	147	89	3	131	264	306	451	8.52e-13	68.9
MS.gene94593.t1	AT3G26744	29.932	147	89	3	131	264	306	451	9.69e-13	68.9
MS.gene94593.t1	AT3G26744	29.932	147	89	3	131	264	306	451	9.69e-13	68.9
MS.gene94593.t1	AT3G26744	29.932	147	89	3	131	264	306	451	9.69e-13	68.9
MS.gene94593.t1	AT5G46760	29.091	165	85	6	136	281	419	570	3.74e-12	67.4
MS.gene94593.t1	AT1G32640	29.333	150	101	4	136	281	456	604	5.42e-12	66.6
MS.gene94593.t1	AT1G10610	45.161	62	34	0	130	191	165	226	6.42e-11	62.8
MS.gene94593.t1	AT2G22750	25.949	158	106	3	125	273	143	298	7.14e-11	62.8
MS.gene94593.t1	AT4G16430	33.684	95	53	2	136	220	324	418	7.39e-11	63.2
MS.gene94593.t1	AT2G22750	25.949	158	106	3	125	273	119	274	7.67e-11	62.4
MS.gene94593.t1	AT2G22750	25.949	158	106	3	125	273	147	302	7.80e-11	62.8
MS.gene94593.t1	AT2G22750	25.949	158	106	3	125	273	147	302	8.21e-11	62.4
MS.gene94593.t1	AT1G10610	45.161	62	34	0	130	191	232	293	8.22e-11	62.8
MS.gene94593.t1	AT2G22750	25.949	158	106	3	125	273	119	274	8.32e-11	62.4

Find 57 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGTTGAATGCTGAGGTTTC+AGG	0.231415	2.4:-15243478	MS.gene94593:CDS
TATTATGATGGAGAGGTTAA+AGG	0.240976	2.4:-15244038	MS.gene94593:CDS
TGGATGGCTTTGAACATTAA+TGG	0.295160	2.4:+15243402	None:intergenic
GCTTTATGCATTGCGTTCTT+TGG	0.304101	2.4:-15243871	MS.gene94593:CDS
ATGGATAAGGCCTCTATAAT+TGG	0.313859	2.4:-15243544	MS.gene94593:CDS
TCGATAAATTGATCAAAGTT+TGG	0.327610	2.4:+15244257	None:intergenic
GTCATGCAGCTCAAAGTTAT+TGG	0.328211	2.4:+15244292	None:intergenic
CTAATTACCTTTGTAATGTT+GGG	0.360034	2.4:+15243846	None:intergenic
ACTAATTACCTTTGTAATGT+TGG	0.365158	2.4:+15243845	None:intergenic
ACTTCCTAGCTTGTGCTTGA+AGG	0.382012	2.4:+15243497	None:intergenic
ACCTTCAAAATTTGAAGCTA+TGG	0.386796	2.4:-15242685	MS.gene94593:CDS
GAGCCAATTGTTGTAGGGCT+TGG	0.390918	2.4:+15244068	None:intergenic
TTGGAGGAATTGAAAGAAGT+TGG	0.405788	2.4:+15244150	None:intergenic
GGCTCCTTCTCTTATTATGA+TGG	0.412262	2.4:-15244050	MS.gene94593:CDS
CAATTTATCGATTTAATTCG+AGG	0.430612	2.4:-15244245	MS.gene94593:CDS
AATCCAAGCCCTACAACAAT+TGG	0.433423	2.4:-15244071	MS.gene94593:CDS
CTGAGAGGAGAAGGAGAGGA+AGG	0.455802	2.4:-15243905	MS.gene94593:CDS
GAGAAGGAGCCAATTGTTGT+AGG	0.465494	2.4:+15244062	None:intergenic
GAGAAGGAGAGGAAGGATGA+AGG	0.465670	2.4:-15243898	MS.gene94593:CDS
GAAGATGCAATATCTAACTT+TGG	0.473277	2.4:-15244215	MS.gene94593:CDS
CCTTCAAAATTTGAAGCTAT+GGG	0.474141	2.4:-15242684	MS.gene94593:CDS
CTCTCATTTCTGAGAGGAGA+AGG	0.475201	2.4:-15243914	MS.gene94593:CDS
CCTCTCAGAAATGAGAGTCT+TGG	0.475407	2.4:+15243920	None:intergenic
TGGTGATCAAATGATGGGTT+TGG	0.476539	2.4:+15244131	None:intergenic
AATTTGCAAGAAAATTATCC+AGG	0.484959	2.4:-15243380	MS.gene94593:intron
TCAGTGTCTGAAAATTATCA+AGG	0.485823	2.4:-15243439	MS.gene94593:CDS
GATGGAGAGGTTAAAGGAGA+AGG	0.491246	2.4:-15244032	MS.gene94593:CDS
CAATGAAGCAATCATTGATA+AGG	0.492027	2.4:+15244186	None:intergenic
ATGGCATGAATTCAAAGCCT+TGG	0.500719	2.4:+15242642	None:intergenic
CATGCAGTGGCTCAAAATGA+TGG	0.501968	2.4:+15242623	None:intergenic
CGATCGATGATGCCAACCCT+AGG	0.507369	2.4:-15243959	MS.gene94593:CDS
AGAAGGAGCCAATTGTTGTA+GGG	0.509001	2.4:+15244063	None:intergenic
TATCCACATACAGATGGATA+AGG	0.511962	2.4:-15243557	MS.gene94593:intron
TACTGCATCTCCAATTATAG+AGG	0.518020	2.4:+15243534	None:intergenic
TTGTTGTGGTGATCAAATGA+TGG	0.518026	2.4:+15244125	None:intergenic
GGTGTTCTCTAGCGAGTCCA+TGG	0.535094	2.4:+15244313	None:intergenic
TATTATTAATAATATTGTTG+TGG	0.538958	2.4:+15244111	None:intergenic
AAAGGAGAAGGAGAAAATGA+TGG	0.542463	2.4:-15244020	MS.gene94593:CDS
GAAGGAGAAAATGATGGAGG+TGG	0.543991	2.4:-15244014	MS.gene94593:CDS
ATGTTTCAAGTAGAGGAAAG+AGG	0.546448	2.4:-15242987	MS.gene94593:CDS
CTTCTCTTATTATGATGGAG+AGG	0.551672	2.4:-15244045	MS.gene94593:CDS
ACCCTAGGGCTAAAACTGAT+AGG	0.553134	2.4:-15243944	MS.gene94593:CDS
GATGGACATGTTTCAAGTAG+AGG	0.555283	2.4:-15242994	MS.gene94593:CDS
AATTTGAAGCTATGGGTGGC+TGG	0.562736	2.4:-15242677	MS.gene94593:CDS
ATGACCTTCAAGCACAAGCT+AGG	0.564350	2.4:-15243501	MS.gene94593:CDS
ATAATGTGCAATAAAGGAGA+AGG	0.570295	2.4:-15242951	MS.gene94593:CDS
AGTAGCTGCTTCATTGTACA+AGG	0.575970	2.4:-15242928	MS.gene94593:CDS
TGATCAAATGATGGGTTTGG+AGG	0.577130	2.4:+15244134	None:intergenic
TGTTGTGGTGATCAAATGAT+GGG	0.582900	2.4:+15244126	None:intergenic
CTCTCCATCATAATAAGAGA+AGG	0.586757	2.4:+15244046	None:intergenic
ATTTCTGAGAGGAGAAGGAG+AGG	0.591195	2.4:-15243909	MS.gene94593:CDS
TTTGGTTCCCAACATTACAA+AGG	0.593392	2.4:-15243853	MS.gene94593:intron
GATCGATGATGCCAACCCTA+GGG	0.596237	2.4:-15243958	MS.gene94593:CDS
GGAGAAGGAGAAAATGATGG+AGG	0.607003	2.4:-15244017	MS.gene94593:CDS
AGCTAGGAAGTTGAATGCTG+AGG	0.609235	2.4:-15243485	MS.gene94593:CDS
TCAAAATTTGAAGCTATGGG+TGG	0.609799	2.4:-15242681	MS.gene94593:CDS
CCAAGACTCTCATTTCTGAG+AGG	0.669057	2.4:-15243920	MS.gene94593:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	CTAATTATAATTAGTATTTA+AGG	+	chr2.4:15243191-15243210	None:intergenic	10.0%
!!	TATTATTAATAATATTGTTG+TGG	+	chr2.4:15242837-15242856	None:intergenic	10.0%
!!!	AAAGTTTTTTCTTTATTATA+TGG	+	chr2.4:15243672-15243691	None:intergenic	10.0%
!!!	AATTCATTGATTAATGATTA+GGG	-	chr2.4:15244157-15244176	MS.gene94593:CDS	15.0%
!!	AATGAAAAATTAAACAAACC+TGG	+	chr2.4:15243586-15243605	None:intergenic	20.0%
!!	AGATAGAAAATTACAAACAA+AGG	-	chr2.4:15243813-15243832	MS.gene94593:intron	20.0%
!!	ATTGATGTGTTGAAAAATAT+AGG	-	chr2.4:15244213-15244232	MS.gene94593:CDS	20.0%
!!	CTAATCATTAATCAATGAAT+TGG	+	chr2.4:15244158-15244177	None:intergenic	20.0%
!!	GATAGAAAATTACAAACAAA+GGG	-	chr2.4:15243814-15243833	MS.gene94593:intron	20.0%
!!	TGTTGAAAAATATAGGTAAA+CGG	-	chr2.4:15244220-15244239	MS.gene94593:CDS	20.0%
!!	TTCGAAATTAATCGAAATAA+AGG	+	chr2.4:15243128-15243147	None:intergenic	20.0%
!!!	AAAAATGTTGGTTTAAGATA+AGG	+	chr2.4:15243734-15243753	None:intergenic	20.0%
!!!	AAACCAACATTTTTTCTTAA+CGG	-	chr2.4:15243740-15243759	MS.gene94593:intron	20.0%
!!!	AAGTTGCAAAGATATAATTT+TGG	-	chr2.4:15243233-15243252	MS.gene94593:intron	20.0%
!!!	ATATGCTTGATATTAATTTG+AGG	-	chr2.4:15243327-15243346	MS.gene94593:intron	20.0%
!!!	CAATTCATTGATTAATGATT+AGG	-	chr2.4:15244156-15244175	MS.gene94593:CDS	20.0%
!!!	TTTGTAATTTTCTATCTTAC+TGG	+	chr2.4:15243810-15243829	None:intergenic	20.0%
!!!	TTTTATTTTTTTTGCACTAG+AGG	-	chr2.4:15243273-15243292	MS.gene94593:intron	20.0%
!	AACTTTACATTTGCAACTTA+AGG	+	chr2.4:15243218-15243237	None:intergenic	25.0%
!	AATTTGCAAGAAAATTATCC+AGG	-	chr2.4:15243565-15243584	MS.gene94593:intron	25.0%
!	ACTAATTACCTTTGTAATGT+TGG	+	chr2.4:15243103-15243122	None:intergenic	25.0%
!	ACTTTACATTTGCAACTTAA+GGG	+	chr2.4:15243217-15243236	None:intergenic	25.0%
!	AGACTCATGAAATTATAACT+TGG	+	chr2.4:15243643-15243662	None:intergenic	25.0%
!	CTAATTACCTTTGTAATGTT+GGG	+	chr2.4:15243102-15243121	None:intergenic	25.0%
!	GCAAAAATAATGTGCAATAA+AGG	-	chr2.4:15243988-15244007	MS.gene94593:CDS	25.0%
!	TCGATAAATTGATCAAAGTT+TGG	+	chr2.4:15242691-15242710	None:intergenic	25.0%
!	TTTATATATCCACATACAGA+TGG	-	chr2.4:15243382-15243401	MS.gene94593:CDS	25.0%
!!	TAATTTTCTTGCAAATTGGA+TGG	+	chr2.4:15243562-15243581	None:intergenic	25.0%
!!	TGGATAATTTTCTTGCAAAT+TGG	+	chr2.4:15243566-15243585	None:intergenic	25.0%
!!!	AAATTTTGAAGGTTCATTTC+TGG	+	chr2.4:15244253-15244272	None:intergenic	25.0%
!!!	CAATTTATCGATTTAATTCG+AGG	-	chr2.4:15242700-15242719	MS.gene94593:CDS	25.0%
!!!	GTTATTGATGTTTTTGCTTA+AGG	-	chr2.4:15244179-15244198	MS.gene94593:CDS	25.0%
	AAAAACCAACTACAAAGTGT+TGG	+	chr2.4:15243886-15243905	None:intergenic	30.0%
	ATAATGTGCAATAAAGGAGA+AGG	-	chr2.4:15243994-15244013	MS.gene94593:CDS	30.0%
	CAATGAAGCAATCATTGATA+AGG	+	chr2.4:15242762-15242781	None:intergenic	30.0%
	GAAGATGCAATATCTAACTT+TGG	-	chr2.4:15242730-15242749	MS.gene94593:intron	30.0%
	TCAATGAATTGGATATTGAG+AGG	+	chr2.4:15244147-15244166	None:intergenic	30.0%
	TCAGTGTCTGAAAATTATCA+AGG	-	chr2.4:15243506-15243525	MS.gene94593:CDS	30.0%
	TTGCCGTTAAGAAAAAATGT+TGG	+	chr2.4:15243746-15243765	None:intergenic	30.0%
!	AAGATAACGAGTTTTCTGTT+GGG	+	chr2.4:15243860-15243879	None:intergenic	30.0%
!	ACCTTCAAAATTTGAAGCTA+TGG	-	chr2.4:15244260-15244279	MS.gene94593:CDS	30.0%
!	CCTTCAAAATTTGAAGCTAT+GGG	-	chr2.4:15244261-15244280	MS.gene94593:CDS	30.0%
!	TAAGATAACGAGTTTTCTGT+TGG	+	chr2.4:15243861-15243880	None:intergenic	30.0%
!	TATTATGATGGAGAGGTTAA+AGG	-	chr2.4:15242907-15242926	MS.gene94593:CDS	30.0%
!!!	TTTTTTTGCACTAGAGGTTA+GGG	-	chr2.4:15243279-15243298	MS.gene94593:intron	30.0%
!!!	TTTTTTTTGCACTAGAGGTT+AGG	-	chr2.4:15243278-15243297	MS.gene94593:intron	30.0%
	AAAGGAGAAGGAGAAAATGA+TGG	-	chr2.4:15242925-15242944	MS.gene94593:CDS	35.0%
	ATGGATAAGGCCTCTATAAT+TGG	-	chr2.4:15243401-15243420	MS.gene94593:CDS	35.0%
	CTCTCCATCATAATAAGAGA+AGG	+	chr2.4:15242902-15242921	None:intergenic	35.0%
	TACTGCATCTCCAATTATAG+AGG	+	chr2.4:15243414-15243433	None:intergenic	35.0%
	TATCCACATACAGATGGATA+AGG	-	chr2.4:15243388-15243407	MS.gene94593:CDS	35.0%
	TGTGCATTATGCTATGTAGA+TGG	-	chr2.4:15243933-15243952	MS.gene94593:CDS	35.0%
	TGTTGTGGTGATCAAATGAT+GGG	+	chr2.4:15242822-15242841	None:intergenic	35.0%
	TTAGACCAACACTTTGTAGT+TGG	-	chr2.4:15243878-15243897	MS.gene94593:CDS	35.0%
	TTGGAGGAATTGAAAGAAGT+TGG	+	chr2.4:15242798-15242817	None:intergenic	35.0%
	TTGTTGTGGTGATCAAATGA+TGG	+	chr2.4:15242823-15242842	None:intergenic	35.0%
!	ATGTTTCAAGTAGAGGAAAG+AGG	-	chr2.4:15243958-15243977	MS.gene94593:CDS	35.0%
!	CCCATAGCTTCAAATTTTGA+AGG	+	chr2.4:15244264-15244283	None:intergenic	35.0%
!	CTTCTCTTATTATGATGGAG+AGG	-	chr2.4:15242900-15242919	MS.gene94593:CDS	35.0%
!	TCAAAATTTGAAGCTATGGG+TGG	-	chr2.4:15244264-15244283	MS.gene94593:CDS	35.0%
!	TTTGGTTCCCAACATTACAA+AGG	-	chr2.4:15243092-15243111	MS.gene94593:intron	35.0%
!!	AAACAAAGGGCATCGTATAT+AGG	-	chr2.4:15243827-15243846	MS.gene94593:intron	35.0%
!!	TGGATGGCTTTGAACATTAA+TGG	+	chr2.4:15243546-15243565	None:intergenic	35.0%
	AAGTTGAATGCTGAGGTTTC+AGG	-	chr2.4:15243467-15243486	MS.gene94593:CDS	40.0%
	AATCCAAGCCCTACAACAAT+TGG	-	chr2.4:15242874-15242893	MS.gene94593:CDS	40.0%
	AGAAGGAGCCAATTGTTGTA+GGG	+	chr2.4:15242885-15242904	None:intergenic	40.0%
	AGTAGCTGCTTCATTGTACA+AGG	-	chr2.4:15244017-15244036	MS.gene94593:CDS	40.0%
	ATGGCATGAATTCAAAGCCT+TGG	+	chr2.4:15244306-15244325	None:intergenic	40.0%
	ATTCATCTTGTGCAGAGACT+TGG	+	chr2.4:15243782-15243801	None:intergenic	40.0%
	GCTTTATGCATTGCGTTCTT+TGG	-	chr2.4:15243074-15243093	MS.gene94593:intron	40.0%
	GGCTCCTTCTCTTATTATGA+TGG	-	chr2.4:15242895-15242914	MS.gene94593:CDS	40.0%
	GTCATGCAGCTCAAAGTTAT+TGG	+	chr2.4:15242656-15242675	None:intergenic	40.0%
!	GATGGACATGTTTCAAGTAG+AGG	-	chr2.4:15243951-15243970	MS.gene94593:CDS	40.0%
!!	ACCTATCAGTTTTAGCCCTA+GGG	+	chr2.4:15243005-15243024	None:intergenic	40.0%
!!	TGATCAAATGATGGGTTTGG+AGG	+	chr2.4:15242814-15242833	None:intergenic	40.0%
!!	TGGTGATCAAATGATGGGTT+TGG	+	chr2.4:15242817-15242836	None:intergenic	40.0%
	ACCCTAGGGCTAAAACTGAT+AGG	-	chr2.4:15243001-15243020	MS.gene94593:intron	45.0%
	AGCTAGGAAGTTGAATGCTG+AGG	-	chr2.4:15243460-15243479	MS.gene94593:CDS	45.0%
	ATGACCTTCAAGCACAAGCT+AGG	-	chr2.4:15243444-15243463	MS.gene94593:CDS	45.0%
	CCAAGACTCTCATTTCTGAG+AGG	-	chr2.4:15243025-15243044	MS.gene94593:intron	45.0%
	CCTCTCAGAAATGAGAGTCT+TGG	+	chr2.4:15243028-15243047	None:intergenic	45.0%
	GAGAAGGAGCCAATTGTTGT+AGG	+	chr2.4:15242886-15242905	None:intergenic	45.0%
	GATGGAGAGGTTAAAGGAGA+AGG	-	chr2.4:15242913-15242932	MS.gene94593:CDS	45.0%
	GGAGAAGGAGAAAATGATGG+AGG	-	chr2.4:15242928-15242947	MS.gene94593:CDS	45.0%
!	AATTTGAAGCTATGGGTGGC+TGG	-	chr2.4:15244268-15244287	MS.gene94593:CDS	45.0%
!	ACTTCCTAGCTTGTGCTTGA+AGG	+	chr2.4:15243451-15243470	None:intergenic	45.0%
!	AGGCCTTATCCATCTGTATG+TGG	+	chr2.4:15243394-15243413	None:intergenic	45.0%
!	ATTTCTGAGAGGAGAAGGAG+AGG	-	chr2.4:15243036-15243055	MS.gene94593:intron	45.0%
!	CTCTCATTTCTGAGAGGAGA+AGG	-	chr2.4:15243031-15243050	MS.gene94593:intron	45.0%
!	GAAGGAGAAAATGATGGAGG+TGG	-	chr2.4:15242931-15242950	MS.gene94593:CDS	45.0%
!!	ATCAGTTTTAGCCCTAGGGT+TGG	+	chr2.4:15243001-15243020	None:intergenic	45.0%
!!	CAAAGGGCATCGTATATAGG+CGG	-	chr2.4:15243830-15243849	MS.gene94593:intron	45.0%
!!	GACCTATCAGTTTTAGCCCT+AGG	+	chr2.4:15243006-15243025	None:intergenic	45.0%
!!	TAATTATAATTAGTATTTAA+GGG	+	chr2.4:15243190-15243209	None:intergenic	5.0%
	GAGAAGGAGAGGAAGGATGA+AGG	-	chr2.4:15243047-15243066	MS.gene94593:intron	50.0%
	GAGCCAATTGTTGTAGGGCT+TGG	+	chr2.4:15242880-15242899	None:intergenic	50.0%
	GATCGATGATGCCAACCCTA+GGG	-	chr2.4:15242987-15243006	MS.gene94593:CDS	50.0%
!	GCTGGTGCTCTTTTGAACCA+AGG	-	chr2.4:15244286-15244305	MS.gene94593:CDS	50.0%
	CGATCGATGATGCCAACCCT+AGG	-	chr2.4:15242986-15243005	MS.gene94593:CDS	55.0%
	CTGAGAGGAGAAGGAGAGGA+AGG	-	chr2.4:15243040-15243059	MS.gene94593:intron	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	15242634	15244333	15242634	ID=MS.gene94593
chr2.4	mRNA	15242634	15244333	15242634	ID=MS.gene94593.t1;Parent=MS.gene94593
chr2.4	exon	15243854	15244333	15243854	ID=MS.gene94593.t1.exon1;Parent=MS.gene94593.t1
chr2.4	CDS	15243854	15244333	15243854	ID=cds.MS.gene94593.t1;Parent=MS.gene94593.t1
chr2.4	exon	15243381	15243566	15243381	ID=MS.gene94593.t1.exon2;Parent=MS.gene94593.t1
chr2.4	CDS	15243381	15243566	15243381	ID=cds.MS.gene94593.t1;Parent=MS.gene94593.t1
chr2.4	exon	15242842	15243015	15242842	ID=MS.gene94593.t1.exon3;Parent=MS.gene94593.t1
chr2.4	CDS	15242842	15243015	15242842	ID=cds.MS.gene94593.t1;Parent=MS.gene94593.t1
chr2.4	exon	15242634	15242732	15242634	ID=MS.gene94593.t1.exon4;Parent=MS.gene94593.t1
chr2.4	CDS	15242634	15242732	15242634	ID=cds.MS.gene94593.t1;Parent=MS.gene94593.t1

Gene Sequence

>MS.gene94593

ATGGACTCGCTAGAGAACACCAATAACTTTGAGCTGCATGACTTCATTGACGATCCAAACTTTGATCAATTTATCGATTTAATTCGAGGTGAACATGAAGATGCAATATCTAACTTTGGTTCTGACCTTATCAATGATTGCTTCATTGATAATAACATAAACCAACTTCTTTCAATTCCTCCAAACCCATCATTTGATCACCACAACAATATTATTAATAATAATCTTGTTAATGAGTATAATCCAAGCCCTACAACAATTGGCTCCTTCTCTTATTATGATGGAGAGGTTAAAGGAGAAGGAGAAAATGATGGAGGTGGTTCTTCTGCAACAACAACGACGACGACAACAACGATCGATGATGCCAACCCTAGGGCTAAAACTGATAGGTCCAAGACTCTCATTTCTGAGAGGAGAAGGAGAGGAAGGATGAAGGATAAGCTTTATGCATTGCGTTCTTTGGTTCCCAACATTACAAAGGTAATTAGTGTCCTTTATTTCGATTAATTTCGAACTCTAGAACTCTTGCTCTTGCATAAAACTAATGTAGTGTCCCTTAAATACTAATTATAATTAGTGTCCCTTAAGTTGCAAATGTAAAGTTGCAAAGATATAATTTTGGTTGAACATTTATAGATTTTTTATTTTTTTTGCACTAGAGGTTAGGGTTGCTACTTTTAAGTTTTCAATATGATATGCTTGATATTAATTTGAGGATGAAAAGTGTAATGTAATTGATATACTTATATTTATATATCCACATACAGATGGATAAGGCCTCTATAATTGGAGATGCAGTATCATATGTGCATGACCTTCAAGCACAAGCTAGGAAGTTGAATGCTGAGGTTTCAGGACTTGAAGCATCTTTATCAGTGTCTGAAAATTATCAAGGATCAATTAGTAACACCATTAATGTTCAAAGCCATCCAATTTGCAAGAAAATTATCCAGGTTTGTTTAATTTTTCATTTCACATTCTAGTTTTTTTTTTGTTTTTTTTAGATCCAAGTTATAATTTCATGAGTCTATAAATCCATATAATAAAGAAAAAACTTTACAAGCATTTTTTTTCTTTTACAAGACTCAAACTCTAAACCTTATCTTAAACCAACATTTTTTCTTAACGGCAAAATTTATTAGTAACCAAGTCTCTGCACAAGATGAATAGAGACCAGTAAGATAGAAAATTACAAACAAAGGGCATCGTATATAGGCGGAACACCCAACAGAAAACTCGTTATCTTAGACCAACACTTTGTAGTTGGTTTTTCAATGTATCGTACACAATTTTAATAGTTGTGCATTATGCTATGTAGATGGACATGTTTCAAGTAGAGGAAAGAGGTTATTATGCAAAAATAATGTGCAATAAAGGAGAAGGAGTAGCTGCTTCATTGTACAAGGCTCTTGAGTCTCTTGCAAATTTCAATGTGCAAAATTCAAACTTAGCTACAGTTTGTGACACTTTTCTACTTACATTTACATTGAATGTAAGTTATTATTATTAGCCTCTCAATATCCAATTCATTGATTAATGATTAGGGTTATTGATGTTTTTGCTTAAGGATTAATTAGTCATTGATGTGTTGAAAAATATAGGTAAACGGTTCTGAACCAGAAATGAACCTTCAAAATTTGAAGCTATGGGTGGCTGGTGCTCTTTTGAACCAAGGCTTTGAATTCATGCCATCATTTTGA

Protein sequence

>MS.gene94593.t1

MDSLENTNNFELHDFIDDPNFDQFIDLIRGEHEDAISNFGSDLINDCFIDNNINQLLSIPPNPSFDHHNNIINNNLVNEYNPSPTTIGSFSYYDGEVKGEGENDGGGSSATTTTTTTTIDDANPRAKTDRSKTLISERRRRGRMKDKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQARKLNAEVSGLEASLSVSENYQGSISNTINVQSHPICKKIIQMDMFQVEERGYYAKIMCNKGEGVAASLYKALESLANFNVQNSNLATVCDTFLLTFTLNVNGSEPEMNLQNLKLWVAGALLNQGFEFMPSF