Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95335.t1 | BBG98627.1 | 71.1 | 439 | 70 | 2 | 1 | 382 | 1 | 439 | 3.50E-169 | 604.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95335.t1 | P10978 | 30.5 | 501 | 267 | 11 | 7 | 442 | 5 | 489 | 1.8e-52 | 208.4 |
| MS.gene95335.t1 | P10978 | 35.6 | 216 | 110 | 5 | 264 | 459 | 935 | 1141 | 1.0e-23 | 112.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95335.t1 | A0A4Y1R3K4 | 71.1 | 439 | 70 | 2 | 1 | 382 | 1 | 439 | 2.6e-169 | 604.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene95335 | 0.806332 | 8.66E-50 | -1.69E-46 |
| MS.gene050085 | MS.gene95335 | 0.801132 | 1.04E-48 | -1.69E-46 |
| MS.gene050213 | MS.gene95335 | 0.80973 | 1.64E-50 | -1.69E-46 |
| MS.gene050646 | MS.gene95335 | 0.811851 | 5.69E-51 | -1.69E-46 |
| MS.gene051209 | MS.gene95335 | 0.801861 | 7.37E-49 | -1.69E-46 |
| MS.gene051343 | MS.gene95335 | 0.803668 | 3.12E-49 | -1.69E-46 |
| MS.gene052609 | MS.gene95335 | 0.813233 | 2.84E-51 | -1.69E-46 |
| MS.gene052735 | MS.gene95335 | 0.81352 | 2.46E-51 | -1.69E-46 |
| MS.gene052736 | MS.gene95335 | 0.826666 | 2.39E-54 | -1.69E-46 |
| MS.gene052776 | MS.gene95335 | 0.804245 | 2.37E-49 | -1.69E-46 |
| MS.gene053726 | MS.gene95335 | 0.800229 | 1.59E-48 | -1.69E-46 |
| MS.gene054892 | MS.gene95335 | 0.808938 | 2.42E-50 | -1.69E-46 |
| MS.gene054893 | MS.gene95335 | 0.812065 | 5.11E-51 | -1.69E-46 |
| MS.gene05615 | MS.gene95335 | 0.820217 | 7.71E-53 | -1.69E-46 |
| MS.gene056973 | MS.gene95335 | 0.809933 | 1.48E-50 | -1.69E-46 |
| MS.gene057174 | MS.gene95335 | 0.823734 | 1.18E-53 | -1.69E-46 |
| MS.gene058010 | MS.gene95335 | 0.801343 | 9.42E-49 | -1.69E-46 |
| MS.gene058292 | MS.gene95335 | 0.850228 | 1.94E-60 | -1.69E-46 |
| MS.gene060520 | MS.gene95335 | 0.801439 | 9.00E-49 | -1.69E-46 |
| MS.gene060933 | MS.gene95335 | 0.843699 | 1.19E-58 | -1.69E-46 |
| MS.gene060937 | MS.gene95335 | 0.809573 | 1.77E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95335.t1 | MTR_2g039140 | 40.217 | 184 | 77 | 2 | 1 | 183 | 120 | 271 | 4.39e-32 | 124 |
| MS.gene95335.t1 | MTR_4g036430 | 89.744 | 39 | 4 | 0 | 1 | 39 | 31 | 69 | 1.19e-18 | 80.5 |
| MS.gene95335.t1 | MTR_1g027280 | 32.667 | 150 | 95 | 2 | 225 | 368 | 103 | 252 | 1.51e-17 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95335.t1 | AT3G29785 | 57.778 | 90 | 37 | 1 | 11 | 100 | 7 | 95 | 5.30e-30 | 113 |
Find 108 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATACCAATTGAACTTAAT+TGG | 0.076810 | 1.3:+18020226 | None:intergenic |
| AATTCTTGAAGAATTCTTTA+TGG | 0.165694 | 1.3:+18019716 | None:intergenic |
| CCGTCTGAGGTGATTGTTCT+TGG | 0.171668 | 1.3:+18018594 | None:intergenic |
| TCATCATCCTTCATCGATTC+TGG | 0.247368 | 1.3:+18020486 | None:intergenic |
| TTCGCCTCTTGATTCTTTGC+TGG | 0.253882 | 1.3:+18019853 | None:intergenic |
| TGACGCATTGATATGTTCTT+TGG | 0.284379 | 1.3:-18019794 | MS.gene95335:CDS |
| CAACGACGTGCTAACCGTTT+TGG | 0.291938 | 1.3:+18018637 | None:intergenic |
| ATTCCATATGCTTCAGCAAT+TGG | 0.349893 | 1.3:-18018545 | MS.gene95335:CDS |
| ATTCTTGAAGAATTCTTTAT+GGG | 0.356648 | 1.3:+18019717 | None:intergenic |
| CTTCCAATTGCTGAAGCATA+TGG | 0.367733 | 1.3:+18018542 | None:intergenic |
| TCGCCTCTTGATTCTTTGCT+GGG | 0.374564 | 1.3:+18019854 | None:intergenic |
| ATGGTGCGGACTTTGGCTTT+TGG | 0.377376 | 1.3:-18020572 | MS.gene95335:CDS |
| AATCTCTTGTGCCATAGATT+AGG | 0.388549 | 1.3:+18019382 | None:intergenic |
| GATACCAATTGAACTTAATT+GGG | 0.389115 | 1.3:+18020227 | None:intergenic |
| CAAATGAAAATCCTAATCTA+TGG | 0.391111 | 1.3:-18019393 | MS.gene95335:CDS |
| GTAAACTTTACCAAGGTTAC+CGG | 0.407938 | 1.3:+18019687 | None:intergenic |
| ACAACCCAATTAAGTTCAAT+TGG | 0.412295 | 1.3:-18020231 | MS.gene95335:CDS |
| ACAGTAGCACTCCAACTATC+TGG | 0.413891 | 1.3:+18020159 | None:intergenic |
| TGGAAATGAACAATCTTGTA+AGG | 0.417574 | 1.3:-18019662 | MS.gene95335:CDS |
| TGCTGAAGCATATGGAATCT+TGG | 0.418789 | 1.3:+18018550 | None:intergenic |
| TGTCTTCCCTACCAGATAGT+TGG | 0.424640 | 1.3:-18020170 | MS.gene95335:CDS |
| CCCACTGCATGGCCAATGTC+TGG | 0.427278 | 1.3:+18018491 | None:intergenic |
| CTCTGGTCTCTTACTCTAGC+AGG | 0.428476 | 1.3:+18018417 | None:intergenic |
| TTAAGTTGAATGGGTCTGTA+TGG | 0.429127 | 1.3:-18019615 | MS.gene95335:CDS |
| ATTTGACGATGTTCGTGATC+TGG | 0.433721 | 1.3:-18020097 | MS.gene95335:CDS |
| TGAACAATCTTGTAAGGTTG+TGG | 0.438789 | 1.3:-18019656 | MS.gene95335:CDS |
| TGTAGCCTTCGTCAGCCAAC+TGG | 0.439978 | 1.3:+18019536 | None:intergenic |
| CGTCTGAGGTGATTGTTCTT+GGG | 0.440972 | 1.3:+18018595 | None:intergenic |
| GAGATCCGACGGAGAGAGTT+GGG | 0.442215 | 1.3:-18020063 | MS.gene95335:CDS |
| GCAAATGTTGCTTCCACCTC+AGG | 0.445655 | 1.3:-18019823 | MS.gene95335:CDS |
| GAAGTTAAGATTAAGTTGAA+TGG | 0.447006 | 1.3:-18019625 | MS.gene95335:CDS |
| GGAGAGCAAGGAAGAGTCTT+GGG | 0.448480 | 1.3:-18019773 | MS.gene95335:CDS |
| CAGTCTTCCACGGTGATGAT+TGG | 0.449152 | 1.3:-18019510 | MS.gene95335:CDS |
| AAGTTCGATGGTGCGGACTT+TGG | 0.452497 | 1.3:-18020579 | MS.gene95335:CDS |
| CACAGCTGTGAGTGGCTCCT+CGG | 0.454182 | 1.3:-18020136 | MS.gene95335:CDS |
| AATCTATGGCACAAGAGATT+AGG | 0.468903 | 1.3:-18019379 | MS.gene95335:CDS |
| ACAGCTGTGAGTGGCTCCTC+GGG | 0.470989 | 1.3:-18020135 | MS.gene95335:CDS |
| TTAGGCCATATGAGTGAAAA+GGG | 0.472747 | 1.3:-18019361 | MS.gene95335:CDS |
| TGAACTTTATTTGATGCTGA+AGG | 0.474628 | 1.3:+18020333 | None:intergenic |
| AAGTTAAGATTAAGTTGAAT+GGG | 0.477594 | 1.3:-18019624 | MS.gene95335:CDS |
| TTGTTGTAACTGCAATCAAA+TGG | 0.485950 | 1.3:+18019413 | None:intergenic |
| TACAAGATTGTTCATTTCCA+AGG | 0.487050 | 1.3:+18019665 | None:intergenic |
| AACCTTGGTAAAGTTTACCT+TGG | 0.487612 | 1.3:-18019682 | MS.gene95335:CDS |
| ATTAGGCCATATGAGTGAAA+AGG | 0.493480 | 1.3:-18019362 | MS.gene95335:CDS |
| GAACAATCTTGTAAGGTTGT+GGG | 0.497160 | 1.3:-18019655 | MS.gene95335:CDS |
| TGGAGAGCAAGGAAGAGTCT+TGG | 0.501744 | 1.3:-18019774 | MS.gene95335:CDS |
| AATTATATCCCCGGTAACCT+TGG | 0.501940 | 1.3:-18019697 | MS.gene95335:CDS |
| TGAGGCGGTTGTTTACGCTT+CGG | 0.506448 | 1.3:-18020305 | MS.gene95335:CDS |
| GATGATTGGAAGATTTCAAA+AGG | 0.514140 | 1.3:-18019496 | MS.gene95335:CDS |
| GAGTCTTGGGTGTTAGACTC+TGG | 0.518950 | 1.3:-18019760 | MS.gene95335:CDS |
| CAACATGGGCGATGCCAAAA+CGG | 0.525887 | 1.3:-18018651 | MS.gene95335:CDS |
| GAGGTGATTGTTCTTGGGAT+AGG | 0.529200 | 1.3:+18018600 | None:intergenic |
| TATGAGTGAAAAGGGGATGA+AGG | 0.531430 | 1.3:-18019353 | MS.gene95335:intron |
| TTCGTCAGCCAACTGGCCTA+CGG | 0.532309 | 1.3:+18019543 | None:intergenic |
| CTTAATCTCCGTAGGCCAGT+TGG | 0.533019 | 1.3:-18019551 | MS.gene95335:CDS |
| CTTTGTATGCAATACTGAAG+AGG | 0.534584 | 1.3:+18020029 | None:intergenic |
| AAAGAAACCAGAATCGATGA+AGG | 0.539324 | 1.3:-18020493 | MS.gene95335:CDS |
| TGCGTCACCTCCTCCTGAGG+TGG | 0.540756 | 1.3:+18019810 | None:intergenic |
| TAAACTTTACCAAGGTTACC+GGG | 0.543499 | 1.3:+18019688 | None:intergenic |
| AGAGATCCGACGGAGAGAGT+TGG | 0.549236 | 1.3:-18020064 | MS.gene95335:CDS |
| GGTACTCTTTACAAGACAGC+TGG | 0.550162 | 1.3:-18019442 | MS.gene95335:CDS |
| CAAATAAAGTTCATTTGATG+AGG | 0.550433 | 1.3:-18020323 | MS.gene95335:CDS |
| TCTTGTAAGGTTGTGGGCAA+AGG | 0.550702 | 1.3:-18019649 | MS.gene95335:CDS |
| GCCAGACATTGGCCATGCAG+TGG | 0.553894 | 1.3:-18018492 | MS.gene95335:CDS |
| CCAGACATTGGCCATGCAGT+GGG | 0.555550 | 1.3:-18018491 | MS.gene95335:CDS |
| AACCACCGCTGGTCTTATGA+AGG | 0.557775 | 1.3:-18020379 | MS.gene95335:CDS |
| TAGCACTCCAACTATCTGGT+AGG | 0.558134 | 1.3:+18020163 | None:intergenic |
| TAAGTTGAATGGGTCTGTAT+GGG | 0.558149 | 1.3:-18019614 | MS.gene95335:CDS |
| TTTACGCTTCGGATGACAGA+AGG | 0.562705 | 1.3:-18020294 | MS.gene95335:CDS |
| GTGAAAATTGAAAAGTTCGA+TGG | 0.563926 | 1.3:-18020591 | MS.gene95335:CDS |
| GTTGCTTCCACCTCAGGAGG+AGG | 0.568689 | 1.3:-18019817 | MS.gene95335:CDS |
| GTCTGTACGAGGCCAGACAT+TGG | 0.576943 | 1.3:-18018503 | MS.gene95335:CDS |
| TGCTAACAACTCCCACTGCA+TGG | 0.579223 | 1.3:+18018480 | None:intergenic |
| TTCTTCAAGAATTATATCCC+CGG | 0.581954 | 1.3:-18019706 | MS.gene95335:CDS |
| GATATGTTCTTTGGAGAGCA+AGG | 0.586306 | 1.3:-18019785 | MS.gene95335:CDS |
| GATGACAGAAGGCGCATCAG+TGG | 0.593273 | 1.3:-18020283 | MS.gene95335:CDS |
| GCTACTGTCACAGCTGTGAG+TGG | 0.594785 | 1.3:-18020144 | MS.gene95335:CDS |
| TTCTCAGTGAAGAGATCCGA+CGG | 0.596721 | 1.3:-18020074 | MS.gene95335:CDS |
| AGCACTCCAACTATCTGGTA+GGG | 0.597976 | 1.3:+18020164 | None:intergenic |
| ATAAAGTTCATTTGATGAGG+CGG | 0.598437 | 1.3:-18020320 | MS.gene95335:CDS |
| CCAAGAACAATCACCTCAGA+CGG | 0.601832 | 1.3:-18018594 | MS.gene95335:CDS |
| CTTCTCGATAGACAAGCACT+TGG | 0.601850 | 1.3:-18020456 | MS.gene95335:CDS |
| TGGAAGTTTGATGTACGCAA+TGG | 0.603643 | 1.3:-18018525 | MS.gene95335:CDS |
| AATGTTGCTTCCACCTCAGG+AGG | 0.603928 | 1.3:-18019820 | MS.gene95335:CDS |
| AATCGATGAAGGATGATGAG+TGG | 0.606445 | 1.3:-18020482 | MS.gene95335:CDS |
| AATTGAAAAGTTCGATGGTG+CGG | 0.608192 | 1.3:-18020586 | MS.gene95335:CDS |
| GGCTACACAACAGTCTTCCA+CGG | 0.609498 | 1.3:-18019520 | MS.gene95335:CDS |
| CAAGTGCTTGTCTATCGAGA+AGG | 0.612004 | 1.3:+18020457 | None:intergenic |
| TATGGCTGCAGACGAAGGAA+AGG | 0.614378 | 1.3:-18020613 | MS.gene95335:CDS |
| TTCCAAGGTAAACTTTACCA+AGG | 0.615217 | 1.3:+18019680 | None:intergenic |
| GGAGTTATGGCTGCAGACGA+AGG | 0.617375 | 1.3:-18020618 | None:intergenic |
| ATTCACCCAACTCTCTCCGT+CGG | 0.618585 | 1.3:+18020058 | None:intergenic |
| AGCCTTCATAAGACCAGCGG+TGG | 0.620835 | 1.3:+18020377 | None:intergenic |
| GAATCAAGAGGCGAAAGATG+AGG | 0.623736 | 1.3:-18019845 | MS.gene95335:CDS |
| GCAAAAGAGAAAACCACCGC+TGG | 0.626545 | 1.3:-18020390 | MS.gene95335:CDS |
| CAATGCGTCACCTCCTCCTG+AGG | 0.628987 | 1.3:+18019807 | None:intergenic |
| TGGTATCGAATTTGACGATG+AGG | 0.629176 | 1.3:-18020211 | MS.gene95335:CDS |
| AGAACAATCACCTCAGACGG+AGG | 0.642335 | 1.3:-18018591 | MS.gene95335:CDS |
| ATAGCTCGCGGTAGAAAGAG+TGG | 0.649534 | 1.3:-18019463 | MS.gene95335:CDS |
| GTAGGCCAGTTGGCTGACGA+AGG | 0.651906 | 1.3:-18019541 | MS.gene95335:CDS |
| CAAAACGGTTAGCACGTCGT+TGG | 0.663704 | 1.3:-18018636 | MS.gene95335:CDS |
| GCTCCCAGCAAAGAATCAAG+AGG | 0.671318 | 1.3:-18019857 | MS.gene95335:CDS |
| AAATCTTCCAATCATCACCG+TGG | 0.678539 | 1.3:+18019503 | None:intergenic |
| TAGGCCATATGAGTGAAAAG+GGG | 0.691407 | 1.3:-18019360 | MS.gene95335:CDS |
| AAACTTTACCAAGGTTACCG+GGG | 0.698437 | 1.3:+18019689 | None:intergenic |
| TGTACGCAATGGTCTGTACG+AGG | 0.702527 | 1.3:-18018514 | MS.gene95335:CDS |
| AAGAGCCTTCATAAGACCAG+CGG | 0.707222 | 1.3:+18020374 | None:intergenic |
| GGTGCAATGACGATAGCTCG+CGG | 0.741901 | 1.3:-18019475 | MS.gene95335:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCTTGAAGAATTCTTTA+TGG | + | chr1.3:18019326-18019345 | None:intergenic | 20.0% |
| !! | ATTCTTGAAGAATTCTTTAT+GGG | + | chr1.3:18019325-18019344 | None:intergenic | 20.0% |
| !!! | AAGTTAAGATTAAGTTGAAT+GGG | - | chr1.3:18019415-18019434 | MS.gene95335:CDS | 20.0% |
| ! | ATATGTGAAGACTATATACT+TGG | - | chr1.3:18019759-18019778 | MS.gene95335:CDS | 25.0% |
| ! | CAAATAAAGTTCATTTGATG+AGG | - | chr1.3:18018716-18018735 | MS.gene95335:intron | 25.0% |
| ! | CAAATGAAAATCCTAATCTA+TGG | - | chr1.3:18019646-18019665 | MS.gene95335:CDS | 25.0% |
| ! | GATACCAATTGAACTTAATT+GGG | + | chr1.3:18018815-18018834 | None:intergenic | 25.0% |
| !!! | GAAGTTAAGATTAAGTTGAA+TGG | - | chr1.3:18019414-18019433 | MS.gene95335:CDS | 25.0% |
| ACAACCCAATTAAGTTCAAT+TGG | - | chr1.3:18018808-18018827 | MS.gene95335:intron | 30.0% | |
| ATAAAGTTCATTTGATGAGG+CGG | - | chr1.3:18018719-18018738 | MS.gene95335:intron | 30.0% | |
| CGATACCAATTGAACTTAAT+TGG | + | chr1.3:18018816-18018835 | None:intergenic | 30.0% | |
| GATGATTGGAAGATTTCAAA+AGG | - | chr1.3:18019543-18019562 | MS.gene95335:CDS | 30.0% | |
| GTATTGCATACAAAGTAAAG+AGG | - | chr1.3:18019018-18019037 | MS.gene95335:intron | 30.0% | |
| GTGAAAATTGAAAAGTTCGA+TGG | - | chr1.3:18018448-18018467 | MS.gene95335:CDS | 30.0% | |
| TACAAGATTGTTCATTTCCA+AGG | + | chr1.3:18019377-18019396 | None:intergenic | 30.0% | |
| TGGAAATGAACAATCTTGTA+AGG | - | chr1.3:18019377-18019396 | MS.gene95335:CDS | 30.0% | |
| TTCTTCAAGAATTATATCCC+CGG | - | chr1.3:18019333-18019352 | MS.gene95335:intron | 30.0% | |
| TTGTTGTAACTGCAATCAAA+TGG | + | chr1.3:18019629-18019648 | None:intergenic | 30.0% | |
| ! | GTTTTGCAAAGATTCAACAT+GGG | - | chr1.3:18020374-18020393 | MS.gene95335:CDS | 30.0% |
| ! | TGAACTTTATTTGATGCTGA+AGG | + | chr1.3:18018709-18018728 | None:intergenic | 30.0% |
| ! | TGTTTTGCAAAGATTCAACA+TGG | - | chr1.3:18020373-18020392 | MS.gene95335:CDS | 30.0% |
| AAAGAAACCAGAATCGATGA+AGG | - | chr1.3:18018546-18018565 | MS.gene95335:CDS | 35.0% | |
| AAATGGACGTGGTAAATCAA+AGG | - | chr1.3:18019059-18019078 | MS.gene95335:intron | 35.0% | |
| AACCTTGGTAAAGTTTACCT+TGG | - | chr1.3:18019357-18019376 | MS.gene95335:CDS | 35.0% | |
| AAGGAAAACTACCAAGTCTT+CGG | - | chr1.3:18019721-18019740 | MS.gene95335:CDS | 35.0% | |
| AATCTATGGCACAAGAGATT+AGG | - | chr1.3:18019660-18019679 | MS.gene95335:CDS | 35.0% | |
| AATCTCTTGTGCCATAGATT+AGG | + | chr1.3:18019660-18019679 | None:intergenic | 35.0% | |
| AATTGAAAAGTTCGATGGTG+CGG | - | chr1.3:18018453-18018472 | MS.gene95335:CDS | 35.0% | |
| ACGAAAAACTTAATCTCCGT+AGG | - | chr1.3:18019480-18019499 | MS.gene95335:CDS | 35.0% | |
| ACTCAAAATCTATCGAGTGT+TGG | - | chr1.3:18019121-18019140 | MS.gene95335:intron | 35.0% | |
| AGAAATTCAACCAGAGGAAA+TGG | - | chr1.3:18019042-18019061 | MS.gene95335:intron | 35.0% | |
| ATAGTCAGCTTTCAGATAAG+TGG | - | chr1.3:18019792-18019811 | MS.gene95335:CDS | 35.0% | |
| ATATACATGCACCAATCAGA+AGG | - | chr1.3:18019979-18019998 | MS.gene95335:intron | 35.0% | |
| ATCACGAGAGATAAGCAAAA+AGG | - | chr1.3:18020314-18020333 | MS.gene95335:CDS | 35.0% | |
| ATCTCTTGAAGAAGCAACAA+TGG | + | chr1.3:18020142-18020161 | None:intergenic | 35.0% | |
| ATGAAGGTTATGCACTCAAA+AGG | - | chr1.3:18019702-18019721 | MS.gene95335:CDS | 35.0% | |
| ATTAGGCCATATGAGTGAAA+AGG | - | chr1.3:18019677-18019696 | MS.gene95335:CDS | 35.0% | |
| ATTCCATATGCTTCAGCAAT+TGG | - | chr1.3:18020494-18020513 | MS.gene95335:CDS | 35.0% | |
| ATTTCTATTGACCGAAGACT+TGG | + | chr1.3:18019735-18019754 | None:intergenic | 35.0% | |
| CAGAAGAAGTGAAGAGAATA+TGG | - | chr1.3:18020007-18020026 | MS.gene95335:intron | 35.0% | |
| CTTTGTATGCAATACTGAAG+AGG | + | chr1.3:18019013-18019032 | None:intergenic | 35.0% | |
| GAACAATCTTGTAAGGTTGT+GGG | - | chr1.3:18019384-18019403 | MS.gene95335:CDS | 35.0% | |
| GACACTTCAAAAATCAGTGT+AGG | - | chr1.3:18019160-18019179 | MS.gene95335:intron | 35.0% | |
| GAGTTTGACATGAAGGATTT+AGG | - | chr1.3:18020263-18020282 | MS.gene95335:CDS | 35.0% | |
| GTAAACTTTACCAAGGTTAC+CGG | + | chr1.3:18019355-18019374 | None:intergenic | 35.0% | |
| GTCAAAAGAGTTTGACATGA+AGG | - | chr1.3:18020256-18020275 | MS.gene95335:CDS | 35.0% | |
| TAAACTTTACCAAGGTTACC+GGG | + | chr1.3:18019354-18019373 | None:intergenic | 35.0% | |
| TGAACAATCTTGTAAGGTTG+TGG | - | chr1.3:18019383-18019402 | MS.gene95335:CDS | 35.0% | |
| TTAGGCCATATGAGTGAAAA+GGG | - | chr1.3:18019678-18019697 | MS.gene95335:CDS | 35.0% | |
| TTCCAAGGTAAACTTTACCA+AGG | + | chr1.3:18019362-18019381 | None:intergenic | 35.0% | |
| ! | ACTACGATGATTTCTGGATT+TGG | + | chr1.3:18019094-18019113 | None:intergenic | 35.0% |
| ! | ATTAAGTTTTTCGTGAGGTC+GGG | + | chr1.3:18019474-18019493 | None:intergenic | 35.0% |
| ! | GATTAAGTTTTTCGTGAGGT+CGG | + | chr1.3:18019475-18019494 | None:intergenic | 35.0% |
| ! | TAAGTTGAATGGGTCTGTAT+GGG | - | chr1.3:18019425-18019444 | MS.gene95335:CDS | 35.0% |
| ! | TGACGCATTGATATGTTCTT+TGG | - | chr1.3:18019245-18019264 | MS.gene95335:intron | 35.0% |
| !! | GTTGATGATATGTTAGTAGC+AGG | - | chr1.3:18020194-18020213 | MS.gene95335:CDS | 35.0% |
| !! | TTAAGTTGAATGGGTCTGTA+TGG | - | chr1.3:18019424-18019443 | MS.gene95335:CDS | 35.0% |
| AAACTTTACCAAGGTTACCG+GGG | + | chr1.3:18019353-18019372 | None:intergenic | 40.0% | |
| AAATCTTCCAATCATCACCG+TGG | + | chr1.3:18019539-18019558 | None:intergenic | 40.0% | |
| AACTTCATATACCACTGCCT+TGG | + | chr1.3:18020074-18020093 | None:intergenic | 40.0% | |
| AATCGATGAAGGATGATGAG+TGG | - | chr1.3:18018557-18018576 | MS.gene95335:CDS | 40.0% | |
| AATTATATCCCCGGTAACCT+TGG | - | chr1.3:18019342-18019361 | MS.gene95335:intron | 40.0% | |
| AGAGGAAGAAATTCAACCAG+AGG | - | chr1.3:18019036-18019055 | MS.gene95335:intron | 40.0% | |
| AGGCTAAAGAAGAGCTTGTA+TGG | - | chr1.3:18020035-18020054 | MS.gene95335:CDS | 40.0% | |
| ATTTGACGATGTTCGTGATC+TGG | - | chr1.3:18018942-18018961 | MS.gene95335:intron | 40.0% | |
| CTGAGAACTACGATGATTTC+TGG | + | chr1.3:18019100-18019119 | None:intergenic | 40.0% | |
| CTTCCAATTGCTGAAGCATA+TGG | + | chr1.3:18020500-18020519 | None:intergenic | 40.0% | |
| CTTGAAGAAGCAACAATGGT+CGG | + | chr1.3:18020138-18020157 | None:intergenic | 40.0% | |
| GGAGGAAGAAAAAGAACTCA+TGG | - | chr1.3:18020466-18020485 | MS.gene95335:CDS | 40.0% | |
| GGTACAAGTATACATGTGTG+TGG | - | chr1.3:18019932-18019951 | MS.gene95335:intron | 40.0% | |
| GGTCAGGCAAAGAAAATTCT+TGG | - | chr1.3:18020284-18020303 | MS.gene95335:CDS | 40.0% | |
| GTTTGAAAGCTTCATGCACA+AGG | - | chr1.3:18020091-18020110 | MS.gene95335:CDS | 40.0% | |
| TAGGCCATATGAGTGAAAAG+GGG | - | chr1.3:18019679-18019698 | MS.gene95335:CDS | 40.0% | |
| TATGAGTGAAAAGGGGATGA+AGG | - | chr1.3:18019686-18019705 | MS.gene95335:CDS | 40.0% | |
| TGACATGAAGGATTTAGGTC+AGG | - | chr1.3:18020268-18020287 | MS.gene95335:CDS | 40.0% | |
| TGCATGTATATCTCCTCAAG+CGG | + | chr1.3:18019970-18019989 | None:intergenic | 40.0% | |
| TGCTGAAGCATATGGAATCT+TGG | + | chr1.3:18020492-18020511 | None:intergenic | 40.0% | |
| TGGAAGTTTGATGTACGCAA+TGG | - | chr1.3:18020514-18020533 | MS.gene95335:CDS | 40.0% | |
| TGTTGGAATTGTGGAAAGAC+AGG | - | chr1.3:18019138-18019157 | MS.gene95335:intron | 40.0% | |
| ! | CGGAGATTAAGTTTTTCGTG+AGG | + | chr1.3:18019479-18019498 | None:intergenic | 40.0% |
| ! | CTTCTGAGAATCCTTCTGAT+TGG | + | chr1.3:18019993-18020012 | None:intergenic | 40.0% |
| ! | GATATGTTCTTTGGAGAGCA+AGG | - | chr1.3:18019254-18019273 | MS.gene95335:intron | 40.0% |
| ! | TCATCCCCTTTTCACTCATA+TGG | + | chr1.3:18019686-18019705 | None:intergenic | 40.0% |
| ! | TGGTATCGAATTTGACGATG+AGG | - | chr1.3:18018828-18018847 | MS.gene95335:intron | 40.0% |
| ! | TTTCATCTTTTTGCTTCCCG+AGG | + | chr1.3:18018923-18018942 | None:intergenic | 40.0% |
| !! | TCATCATCCTTCATCGATTC+TGG | + | chr1.3:18018556-18018575 | None:intergenic | 40.0% |
| !! | TCTATCGAGTGTTGGAATTG+TGG | - | chr1.3:18019129-18019148 | MS.gene95335:intron | 40.0% |
| !! | TCTGGTTTCTTTTCTGTGAG+AGG | + | chr1.3:18018538-18018557 | None:intergenic | 40.0% |
| AAGAGCCTTCATAAGACCAG+CGG | + | chr1.3:18018668-18018687 | None:intergenic | 45.0% | |
| AAGTGGAAGAACCCCAAAGA+AGG | - | chr1.3:18019809-18019828 | MS.gene95335:CDS | 45.0% | |
| ACAGTAGCACTCCAACTATC+TGG | + | chr1.3:18018883-18018902 | None:intergenic | 45.0% | |
| AGCACTCCAACTATCTGGTA+GGG | + | chr1.3:18018878-18018897 | None:intergenic | 45.0% | |
| CAAGTGCTTGTCTATCGAGA+AGG | + | chr1.3:18018585-18018604 | None:intergenic | 45.0% | |
| CCAAGAACAATCACCTCAGA+CGG | - | chr1.3:18020445-18020464 | MS.gene95335:CDS | 45.0% | |
| CTTCTCGATAGACAAGCACT+TGG | - | chr1.3:18018583-18018602 | MS.gene95335:CDS | 45.0% | |
| GAAAGCTTCATGCACAAGGA+AGG | - | chr1.3:18020095-18020114 | MS.gene95335:CDS | 45.0% | |
| GAATCAAGAGGCGAAAGATG+AGG | - | chr1.3:18019194-18019213 | MS.gene95335:intron | 45.0% | |
| GAGGTGATTGTTCTTGGGAT+AGG | + | chr1.3:18020442-18020461 | None:intergenic | 45.0% | |
| GGTACTCTTTACAAGACAGC+TGG | - | chr1.3:18019597-18019616 | MS.gene95335:CDS | 45.0% | |
| GTGAAGAGAATATGGTGTGC+AGG | - | chr1.3:18020015-18020034 | MS.gene95335:intron | 45.0% | |
| TAGCACTCCAACTATCTGGT+AGG | + | chr1.3:18018879-18018898 | None:intergenic | 45.0% | |
| TCGAACCTTTCGTCAAACCA+CGG | + | chr1.3:18019839-18019858 | None:intergenic | 45.0% | |
| TCGCCTCTTGATTCTTTGCT+GGG | + | chr1.3:18019188-18019207 | None:intergenic | 45.0% | |
| TCTTGTAAGGTTGTGGGCAA+AGG | - | chr1.3:18019390-18019409 | MS.gene95335:CDS | 45.0% | |
| TGTCTTCCCTACCAGATAGT+TGG | - | chr1.3:18018869-18018888 | MS.gene95335:intron | 45.0% | |
| TTCGCCTCTTGATTCTTTGC+TGG | + | chr1.3:18019189-18019208 | None:intergenic | 45.0% | |
| TTCTCAGTGAAGAGATCCGA+CGG | - | chr1.3:18018965-18018984 | MS.gene95335:intron | 45.0% | |
| TTTACCACGTCCATTTCCTC+TGG | + | chr1.3:18019055-18019074 | None:intergenic | 45.0% | |
| TTTACGCTTCGGATGACAGA+AGG | - | chr1.3:18018745-18018764 | MS.gene95335:intron | 45.0% | |
| ! | CGTCTGAGGTGATTGTTCTT+GGG | + | chr1.3:18020447-18020466 | None:intergenic | 45.0% |
| ! | TCTTTTTCTTCCTCCGTCTG+AGG | + | chr1.3:18020461-18020480 | None:intergenic | 45.0% |
| AAACCACGGCTCTCCTTCTT+TGG | + | chr1.3:18019825-18019844 | None:intergenic | 50.0% | |
| AACCACGGCTCTCCTTCTTT+GGG | + | chr1.3:18019824-18019843 | None:intergenic | 50.0% | |
| AAGTTCGATGGTGCGGACTT+TGG | - | chr1.3:18018460-18018479 | MS.gene95335:CDS | 50.0% | |
| AATGGTCGGCATTGCACTTC+TGG | + | chr1.3:18020124-18020143 | None:intergenic | 50.0% | |
| AGAACAATCACCTCAGACGG+AGG | - | chr1.3:18020448-18020467 | MS.gene95335:CDS | 50.0% | |
| ATAGCTCGCGGTAGAAAGAG+TGG | - | chr1.3:18019576-18019595 | MS.gene95335:CDS | 50.0% | |
| ATGGCCTGAAACAAGCTCCA+AGG | - | chr1.3:18020054-18020073 | MS.gene95335:CDS | 50.0% | |
| ATTCACCCAACTCTCTCCGT+CGG | + | chr1.3:18018984-18019003 | None:intergenic | 50.0% | |
| CAAAACGGTTAGCACGTCGT+TGG | - | chr1.3:18020403-18020422 | MS.gene95335:CDS | 50.0% | |
| CAACATGGGCGATGCCAAAA+CGG | - | chr1.3:18020388-18020407 | MS.gene95335:CDS | 50.0% | |
| CAGTCTTCCACGGTGATGAT+TGG | - | chr1.3:18019529-18019548 | MS.gene95335:CDS | 50.0% | |
| CTTAATCTCCGTAGGCCAGT+TGG | - | chr1.3:18019488-18019507 | MS.gene95335:CDS | 50.0% | |
| GAGTCTTGGGTGTTAGACTC+TGG | - | chr1.3:18019279-18019298 | MS.gene95335:intron | 50.0% | |
| GATGAAAGAGCTTCCGCTTG+AGG | - | chr1.3:18019954-18019973 | MS.gene95335:intron | 50.0% | |
| GCAAAAGAGAAAACCACCGC+TGG | - | chr1.3:18018649-18018668 | MS.gene95335:CDS | 50.0% | |
| GCTCCCAGCAAAGAATCAAG+AGG | - | chr1.3:18019182-18019201 | MS.gene95335:intron | 50.0% | |
| GGAGAGCAAGGAAGAGTCTT+GGG | - | chr1.3:18019266-18019285 | MS.gene95335:intron | 50.0% | |
| GGCTACACAACAGTCTTCCA+CGG | - | chr1.3:18019519-18019538 | MS.gene95335:CDS | 50.0% | |
| GGTTTGACGAAAGGTTCGAC+CGG | - | chr1.3:18019840-18019859 | MS.gene95335:CDS | 50.0% | |
| TCAACCAGAGGAAATGGACG+TGG | - | chr1.3:18019048-18019067 | MS.gene95335:intron | 50.0% | |
| TCAGGAGGACTTTCGACACA+AGG | + | chr1.3:18019868-18019887 | None:intergenic | 50.0% | |
| TGAAACAAGCTCCAAGGCAG+TGG | - | chr1.3:18020060-18020079 | MS.gene95335:CDS | 50.0% | |
| TGAGGCGGTTGTTTACGCTT+CGG | - | chr1.3:18018734-18018753 | MS.gene95335:intron | 50.0% | |
| TGCTAACAACTCCCACTGCA+TGG | + | chr1.3:18020562-18020581 | None:intergenic | 50.0% | |
| TGGAGAGCAAGGAAGAGTCT+TGG | - | chr1.3:18019265-18019284 | MS.gene95335:intron | 50.0% | |
| TGTACGCAATGGTCTGTACG+AGG | - | chr1.3:18020525-18020544 | MS.gene95335:CDS | 50.0% | |
| TGTTCCGTTGAGTGCAGCAA+CGG | - | chr1.3:18019908-18019927 | MS.gene95335:intron | 50.0% | |
| ! | AATGTTGCTTCCACCTCAGG+AGG | - | chr1.3:18019219-18019238 | MS.gene95335:intron | 50.0% |
| ! | ACTGCCTTGGAGCTTGTTTC+AGG | + | chr1.3:18020061-18020080 | None:intergenic | 50.0% |
| ! | CAACGACGTGCTAACCGTTT+TGG | + | chr1.3:18020405-18020424 | None:intergenic | 50.0% |
| ! | CCGTCTGAGGTGATTGTTCT+TGG | + | chr1.3:18020448-18020467 | None:intergenic | 50.0% |
| ! | GCAAATGTTGCTTCCACCTC+AGG | - | chr1.3:18019216-18019235 | MS.gene95335:intron | 50.0% |
| !! | AACCACCGCTGGTCTTATGA+AGG | - | chr1.3:18018660-18018679 | MS.gene95335:CDS | 50.0% |
| !!! | ATGGTGCGGACTTTGGCTTT+TGG | - | chr1.3:18018467-18018486 | MS.gene95335:CDS | 50.0% |
| ACCACGGCTCTCCTTCTTTG+GGG | + | chr1.3:18019823-18019842 | None:intergenic | 55.0% | |
| AGAGATCCGACGGAGAGAGT+TGG | - | chr1.3:18018975-18018994 | MS.gene95335:intron | 55.0% | |
| AGCCTTCATAAGACCAGCGG+TGG | + | chr1.3:18018665-18018684 | None:intergenic | 55.0% | |
| CCAGACATTGGCCATGCAGT+GGG | - | chr1.3:18020548-18020567 | MS.gene95335:CDS | 55.0% | |
| CCTCCTGACCAAGTGTGTTC+AGG | - | chr1.3:18019880-18019899 | MS.gene95335:intron | 55.0% | |
| CCTGAACACACTTGGTCAGG+AGG | + | chr1.3:18019883-18019902 | None:intergenic | 55.0% | |
| CCTGACCAAGTGTGTTCAGG+CGG | - | chr1.3:18019883-18019902 | MS.gene95335:intron | 55.0% | |
| GAGAGCCGTGGTTTGACGAA+AGG | - | chr1.3:18019831-18019850 | MS.gene95335:CDS | 55.0% | |
| GAGATCCGACGGAGAGAGTT+GGG | - | chr1.3:18018976-18018995 | MS.gene95335:intron | 55.0% | |
| GCTACTGTCACAGCTGTGAG+TGG | - | chr1.3:18018895-18018914 | MS.gene95335:intron | 55.0% | |
| GGACTTTCGACACAAGGAGC+CGG | + | chr1.3:18019862-18019881 | None:intergenic | 55.0% | |
| GGTGCAATGACGATAGCTCG+CGG | - | chr1.3:18019564-18019583 | MS.gene95335:CDS | 55.0% | |
| GTCTGTACGAGGCCAGACAT+TGG | - | chr1.3:18020536-18020555 | MS.gene95335:CDS | 55.0% | |
| TGTAGCCTTCGTCAGCCAAC+TGG | + | chr1.3:18019506-18019525 | None:intergenic | 55.0% | |
| ! | GATGACAGAAGGCGCATCAG+TGG | - | chr1.3:18018756-18018775 | MS.gene95335:intron | 55.0% |
| ! | TTCGTCAGCCAACTGGCCTA+CGG | + | chr1.3:18019499-18019518 | None:intergenic | 55.0% |
| ACACGCCGCCTGAACACACT+TGG | + | chr1.3:18019891-18019910 | None:intergenic | 60.0% | |
| ACAGCTGTGAGTGGCTCCTC+GGG | - | chr1.3:18018904-18018923 | MS.gene95335:intron | 60.0% | |
| ACCCCAAAGAAGGAGAGCCG+TGG | - | chr1.3:18019819-18019838 | MS.gene95335:CDS | 60.0% | |
| ACCGCCGTTGCTGCACTCAA+CGG | + | chr1.3:18019915-18019934 | None:intergenic | 60.0% | |
| CAATGCGTCACCTCCTCCTG+AGG | + | chr1.3:18019235-18019254 | None:intergenic | 60.0% | |
| CACAGCTGTGAGTGGCTCCT+CGG | - | chr1.3:18018903-18018922 | MS.gene95335:intron | 60.0% | |
| CCCACTGCATGGCCAATGTC+TGG | + | chr1.3:18020551-18020570 | None:intergenic | 60.0% | |
| CCGCCTGAACACACTTGGTC+AGG | + | chr1.3:18019886-18019905 | None:intergenic | 60.0% | |
| GCCAGACATTGGCCATGCAG+TGG | - | chr1.3:18020547-18020566 | MS.gene95335:CDS | 60.0% | |
| GTAGGCCAGTTGGCTGACGA+AGG | - | chr1.3:18019498-18019517 | MS.gene95335:CDS | 60.0% | |
| GTTGCTTCCACCTCAGGAGG+AGG | - | chr1.3:18019222-18019241 | MS.gene95335:intron | 60.0% | |
| TCCGTTGAGTGCAGCAACGG+CGG | - | chr1.3:18019911-18019930 | MS.gene95335:intron | 60.0% | |
| TGCGTCACCTCCTCCTGAGG+TGG | + | chr1.3:18019232-18019251 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 18018427 | 18020634 | 18018427 | ID=MS.gene95335 |
| chr1.3 | mRNA | 18018427 | 18020634 | 18018427 | ID=MS.gene95335.t1;Parent=MS.gene95335 |
| chr1.3 | exon | 18020030 | 18020634 | 18020030 | ID=MS.gene95335.t1.exon1;Parent=MS.gene95335.t1 |
| chr1.3 | CDS | 18020030 | 18020634 | 18020030 | ID=cds.MS.gene95335.t1;Parent=MS.gene95335.t1 |
| chr1.3 | exon | 18019354 | 18019879 | 18019354 | ID=MS.gene95335.t1.exon2;Parent=MS.gene95335.t1 |
| chr1.3 | CDS | 18019354 | 18019879 | 18019354 | ID=cds.MS.gene95335.t1;Parent=MS.gene95335.t1 |
| chr1.3 | exon | 18018427 | 18018714 | 18018427 | ID=MS.gene95335.t1.exon3;Parent=MS.gene95335.t1 |
| chr1.3 | CDS | 18018427 | 18018714 | 18018427 | ID=cds.MS.gene95335.t1;Parent=MS.gene95335.t1 |
| Gene Sequence |
| Protein sequence |
