Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95436.t1 | KEH26375.1 | 98.3 | 178 | 2 | 1 | 1 | 177 | 92 | 269 | 7.70E-93 | 349.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95436.t1 | Q9FLX7 | 75.7 | 152 | 36 | 1 | 1 | 152 | 6 | 156 | 2.3e-61 | 236.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95436.t1 | A0A072UKP4 | 98.3 | 178 | 2 | 1 | 1 | 177 | 92 | 269 | 5.5e-93 | 349.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050277 | MS.gene95436 | 0.810437 | 1.15E-50 | -1.69E-46 |
| MS.gene050438 | MS.gene95436 | 0.801088 | 1.06E-48 | -1.69E-46 |
| MS.gene050719 | MS.gene95436 | 0.82407 | 9.85E-54 | -1.69E-46 |
| MS.gene050721 | MS.gene95436 | 0.825245 | 5.21E-54 | -1.69E-46 |
| MS.gene050724 | MS.gene95436 | 0.823215 | 1.56E-53 | -1.69E-46 |
| MS.gene050815 | MS.gene95436 | 0.821784 | 3.36E-53 | -1.69E-46 |
| MS.gene051063 | MS.gene95436 | 0.815894 | 7.32E-52 | -1.69E-46 |
| MS.gene051757 | MS.gene95436 | 0.824175 | 9.31E-54 | -1.69E-46 |
| MS.gene052896 | MS.gene95436 | 0.802453 | 5.57E-49 | -1.69E-46 |
| MS.gene056432 | MS.gene95436 | 0.832511 | 9.07E-56 | -1.69E-46 |
| MS.gene056631 | MS.gene95436 | 0.811572 | 6.55E-51 | -1.69E-46 |
| MS.gene057140 | MS.gene95436 | 0.847465 | 1.14E-59 | -1.69E-46 |
| MS.gene057234 | MS.gene95436 | 0.800225 | 1.59E-48 | -1.69E-46 |
| MS.gene058084 | MS.gene95436 | 0.810382 | 1.18E-50 | -1.69E-46 |
| MS.gene058851 | MS.gene95436 | 0.810773 | 9.76E-51 | -1.69E-46 |
| MS.gene058906 | MS.gene95436 | 0.891409 | 4.08E-74 | -1.69E-46 |
| MS.gene059898 | MS.gene95436 | 0.80124 | 9.88E-49 | -1.69E-46 |
| MS.gene06001 | MS.gene95436 | 0.830485 | 2.86E-55 | -1.69E-46 |
| MS.gene060429 | MS.gene95436 | 0.800669 | 1.29E-48 | -1.69E-46 |
| MS.gene060619 | MS.gene95436 | 0.812546 | 4.01E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95436.t1 | MTR_6g053280 | 98.315 | 178 | 2 | 1 | 1 | 177 | 92 | 269 | 6.23e-127 | 357 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95436.t1 | AT5G52840 | 75.658 | 152 | 36 | 1 | 1 | 152 | 6 | 156 | 1.52e-81 | 239 |
| MS.gene95436.t1 | AT5G52840 | 79.798 | 99 | 20 | 0 | 1 | 99 | 6 | 104 | 1.90e-52 | 163 |
| MS.gene95436.t1 | AT4G28005 | 39.869 | 153 | 35 | 4 | 1 | 152 | 6 | 102 | 1.39e-21 | 85.1 |
Find 41 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCTTTATTCTTGCCATTA+AGG | 0.186637 | 6.2:-43691178 | None:intergenic |
| TTACGATACCCTTCATCTTC+TGG | 0.262187 | 6.2:-43691294 | None:intergenic |
| ATCAACACTTCTCTTGCATT+TGG | 0.286655 | 6.2:-43691231 | None:intergenic |
| AGCGATGGCACGACCCTTAA+TGG | 0.290344 | 6.2:+43691164 | None:intergenic |
| GTCTTTATTCTTGCCATTAA+GGG | 0.290759 | 6.2:-43691177 | None:intergenic |
| TTTGTCAAGAAGAAGAAGAT+TGG | 0.344948 | 6.2:+43691352 | MS.gene95436:CDS |
| TCAACACTTCTCTTGCATTT+GGG | 0.351069 | 6.2:-43691230 | None:intergenic |
| CTTTACAAGTCATAGACTTA+AGG | 0.359250 | 6.2:+43691329 | MS.gene95436:CDS |
| AGACACCTTAGATGCACTTA+TGG | 0.361826 | 6.2:+43695603 | MS.gene95436:CDS |
| ATCTCAATTTCGTGATCATC+AGG | 0.365884 | 6.2:-43695508 | None:intergenic |
| TATTGCAGAATGGGATCCTT+GGG | 0.383342 | 6.2:+43695480 | MS.gene95436:intron |
| TTGTCAAGAAGAAGAAGATT+GGG | 0.384208 | 6.2:+43691353 | MS.gene95436:CDS |
| GTCAGCCATAAGTGCATCTA+AGG | 0.386612 | 6.2:-43695608 | None:intergenic |
| AAGGTGTCTTGAAACTCCTT+AGG | 0.391049 | 6.2:-43695589 | None:intergenic |
| AAACTCATTGGCTATATGAT+TGG | 0.433002 | 6.2:+43691444 | MS.gene95436:CDS |
| GACCCTTAACGAGATCAAAA+AGG | 0.437941 | 6.2:+43691269 | MS.gene95436:CDS |
| GCAAGAATAAAGACAACAAC+AGG | 0.445081 | 6.2:+43691186 | MS.gene95436:CDS |
| CGGTGTTGAGGAACGTGCTT+CGG | 0.452618 | 6.2:-43695553 | None:intergenic |
| TGAGGAACGTGCTTCGGAAT+TGG | 0.463485 | 6.2:-43695547 | None:intergenic |
| CAAGATGAACTCAAACTCAT+TGG | 0.466880 | 6.2:+43691432 | MS.gene95436:CDS |
| ACAAGAAAAGATGGTGCTGC+TGG | 0.482122 | 6.2:+43695670 | MS.gene95436:CDS |
| GTATTGCAGAATGGGATCCT+TGG | 0.482980 | 6.2:+43695479 | MS.gene95436:intron |
| ATTGAGAATCGTCTTGGTTG+TGG | 0.487668 | 6.2:+43691381 | MS.gene95436:CDS |
| GAATCGTCTTGGTTGTGGTC+AGG | 0.495827 | 6.2:+43691386 | MS.gene95436:CDS |
| ATCAAAGATGGAAAAGATAG+AGG | 0.503646 | 6.2:+43695633 | MS.gene95436:CDS |
| TATGGCTGACCCATCAAAGA+TGG | 0.511515 | 6.2:+43695621 | MS.gene95436:CDS |
| AGGTGTCTTGAAACTCCTTA+GGG | 0.525753 | 6.2:-43695588 | None:intergenic |
| GAGAAGATTGAGAATCGTCT+TGG | 0.529191 | 6.2:+43691375 | MS.gene95436:CDS |
| GTGGCTAAAACAAGAAAAGA+TGG | 0.539846 | 6.2:+43695661 | MS.gene95436:CDS |
| CCGTCCTCCTCGTCTCCCTA+AGG | 0.545794 | 6.2:+43695573 | MS.gene95436:CDS |
| AGACGAGGAGGACGGTGTTG+AGG | 0.584235 | 6.2:-43695565 | None:intergenic |
| AAGACAACAACAGGAATCGT+AGG | 0.600187 | 6.2:+43691195 | MS.gene95436:CDS |
| AAAAGGTTCCAGAAGATGAA+GGG | 0.602923 | 6.2:+43691286 | MS.gene95436:CDS |
| GGAAAAGATAGAGGAACTTG+TGG | 0.609007 | 6.2:+43695642 | MS.gene95436:CDS |
| TCTCAATTTCGTGATCATCA+GGG | 0.633734 | 6.2:-43695507 | None:intergenic |
| TGATCATCAGGGATACCCCA+AGG | 0.657129 | 6.2:-43695496 | None:intergenic |
| CCTTAGGGAGACGAGGAGGA+CGG | 0.660867 | 6.2:-43695573 | None:intergenic |
| TGATGATCACGAAATTGAGA+TGG | 0.663792 | 6.2:+43695510 | MS.gene95436:CDS |
| TGAAACTCCTTAGGGAGACG+AGG | 0.673297 | 6.2:-43695580 | None:intergenic |
| AACTCCTTAGGGAGACGAGG+AGG | 0.696168 | 6.2:-43695577 | None:intergenic |
| ATTGCAGAATGGGATCCTTG+GGG | 0.697431 | 6.2:+43695481 | MS.gene95436:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATGTATATTACTAAAAT+AGG | + | chr6.2:43693611-43693630 | MS.gene95436:intron | 10.0% |
| !! | AATTATTTCATAATCAATTC+TGG | - | chr6.2:43693480-43693499 | None:intergenic | 15.0% |
| !! | ATTATCAAACAATTAAGATT+TGG | - | chr6.2:43695436-43695455 | None:intergenic | 15.0% |
| !! | TCTTATTATTTAATCATGAT+GGG | - | chr6.2:43693101-43693120 | None:intergenic | 15.0% |
| !!! | ATCTCTTTATTTGTATATAA+AGG | + | chr6.2:43693148-43693167 | MS.gene95436:intron | 15.0% |
| !!! | GATTATGAAATAATTGATTT+TGG | + | chr6.2:43693485-43693504 | MS.gene95436:intron | 15.0% |
| !!! | TAACATAATTGATTTATGTT+TGG | + | chr6.2:43693521-43693540 | MS.gene95436:intron | 15.0% |
| !!! | TATAATGTGTATTTTATGTT+TGG | + | chr6.2:43695226-43695245 | MS.gene95436:intron | 15.0% |
| !!! | TCTCTTTATTTGTATATAAA+GGG | + | chr6.2:43693149-43693168 | MS.gene95436:intron | 15.0% |
| !! | AAAAAGTAGGGAATTTATTT+GGG | + | chr6.2:43693426-43693445 | MS.gene95436:intron | 20.0% |
| !! | AAAACATTAGACATTTAGTT+AGG | + | chr6.2:43695118-43695137 | MS.gene95436:intron | 20.0% |
| !! | AAACATTAGACATTTAGTTA+GGG | + | chr6.2:43695119-43695138 | MS.gene95436:intron | 20.0% |
| !! | AAATATCACATTTGAATCTA+AGG | - | chr6.2:43692391-43692410 | None:intergenic | 20.0% |
| !! | AAATTTAAACTCATAACACA+AGG | - | chr6.2:43695019-43695038 | None:intergenic | 20.0% |
| !! | AATTCAATACTCTTATCAAA+AGG | + | chr6.2:43692326-43692345 | MS.gene95436:intron | 20.0% |
| !! | AGATGGTAATTAAATAAAAC+AGG | - | chr6.2:43693331-43693350 | None:intergenic | 20.0% |
| !! | ATTCTAGTATTTAACTCTAA+TGG | - | chr6.2:43693127-43693146 | None:intergenic | 20.0% |
| !! | CATCATGATTAAATAATAAG+AGG | + | chr6.2:43693100-43693119 | MS.gene95436:intron | 20.0% |
| !! | CCAATGATAATAATTGATTA+TGG | + | chr6.2:43692226-43692245 | MS.gene95436:intron | 20.0% |
| !! | CCATAATCAATTATTATCAT+TGG | - | chr6.2:43692229-43692248 | None:intergenic | 20.0% |
| !! | CTCTTATTATTTAATCATGA+TGG | - | chr6.2:43693102-43693121 | None:intergenic | 20.0% |
| !! | GATGGTAATTAAATAAAACA+GGG | - | chr6.2:43693330-43693349 | None:intergenic | 20.0% |
| !! | GTTAGGAATAATGATAAATT+GGG | + | chr6.2:43691579-43691598 | MS.gene95436:intron | 20.0% |
| !! | TACGAAATACTAATAAAGAA+TGG | + | chr6.2:43695202-43695221 | MS.gene95436:intron | 20.0% |
| !! | TTAGACATATATTCAACTAT+AGG | - | chr6.2:43694392-43694411 | None:intergenic | 20.0% |
| !! | TTCTAGTATTTAACTCTAAT+GGG | - | chr6.2:43693126-43693145 | None:intergenic | 20.0% |
| !!! | AACTAAATGTCTAATGTTTT+AGG | - | chr6.2:43695118-43695137 | None:intergenic | 20.0% |
| !!! | CTCTTTATTTGTATATAAAG+GGG | + | chr6.2:43693150-43693169 | MS.gene95436:intron | 20.0% |
| !!! | GATCAAAATTCATTGATTTT+AGG | + | chr6.2:43692751-43692770 | MS.gene95436:intron | 20.0% |
| !!! | TAAAAAAATAGGTTTTTCGA+AGG | - | chr6.2:43694711-43694730 | None:intergenic | 20.0% |
| !!! | TTCTATGTTGATTAATATGT+GGG | - | chr6.2:43694644-43694663 | None:intergenic | 20.0% |
| !!! | TTGGTTATTTTGTTTTTCTA+GGG | + | chr6.2:43692843-43692862 | MS.gene95436:intron | 20.0% |
| !!! | TTGTTGTTCTTTTGTATTAT+CGG | + | chr6.2:43693996-43694015 | MS.gene95436:intron | 20.0% |
| !!! | TTTACTATTTGTTGCAAATT+GGG | + | chr6.2:43692996-43693015 | MS.gene95436:intron | 20.0% |
| !!! | TTTAGGATCTTCAAAAATTT+AGG | - | chr6.2:43695101-43695120 | None:intergenic | 20.0% |
| !!! | TTTCTATGTTGATTAATATG+TGG | - | chr6.2:43694645-43694664 | None:intergenic | 20.0% |
| !!! | TTTGGTTATTTTGTTTTTCT+AGG | + | chr6.2:43692842-43692861 | MS.gene95436:intron | 20.0% |
| !!! | TTTGTGTTTTTATACAGTAA+GGG | + | chr6.2:43691731-43691750 | MS.gene95436:intron | 20.0% |
| !!! | TTTTACTATTTGTTGCAAAT+TGG | + | chr6.2:43692995-43693014 | MS.gene95436:intron | 20.0% |
| !!! | TTTTCCATTTGTATCAATAA+AGG | + | chr6.2:43693302-43693321 | MS.gene95436:intron | 20.0% |
| !!! | TTTTTACAATGTTTTTGTTG+AGG | + | chr6.2:43691557-43691576 | MS.gene95436:intron | 20.0% |
| !!! | TTTTTTTCACTTCATGAATT+TGG | + | chr6.2:43695305-43695324 | MS.gene95436:intron | 20.0% |
| !!! | TTTTTTTTTTGTTACAGAGA+GGG | - | chr6.2:43692512-43692531 | None:intergenic | 20.0% |
| ! | AACATTAGACATTTAGTTAG+GGG | + | chr6.2:43695120-43695139 | MS.gene95436:intron | 25.0% |
| ! | AATCCATATTCGTATATGTT+TGG | - | chr6.2:43693910-43693929 | None:intergenic | 25.0% |
| ! | ACAATAAATACGGTATAACA+CGG | - | chr6.2:43694277-43694296 | None:intergenic | 25.0% |
| ! | ACATTCAATTCATTCATTTG+TGG | + | chr6.2:43692123-43692142 | MS.gene95436:intron | 25.0% |
| ! | ATATATTCAACTATAGGTGT+CGG | - | chr6.2:43694386-43694405 | None:intergenic | 25.0% |
| ! | ATGTGGTTACATTCAATTAT+TGG | + | chr6.2:43694444-43694463 | MS.gene95436:intron | 25.0% |
| ! | ATTGAGAAAATTCTAAACCA+TGG | - | chr6.2:43693958-43693977 | None:intergenic | 25.0% |
| ! | CAAACAAGAAAATAAACAGA+TGG | - | chr6.2:43693348-43693367 | None:intergenic | 25.0% |
| ! | GAAAAAGTAGGGAATTTATT+TGG | + | chr6.2:43693425-43693444 | MS.gene95436:intron | 25.0% |
| ! | GAATGAAAGTTAGATGAAAA+TGG | + | chr6.2:43692907-43692926 | MS.gene95436:intron | 25.0% |
| ! | GGTTAGGAATAATGATAAAT+TGG | + | chr6.2:43691578-43691597 | MS.gene95436:intron | 25.0% |
| ! | GTATTTCGTAAAATTCACAT+CGG | - | chr6.2:43695192-43695211 | None:intergenic | 25.0% |
| ! | TAAGAGCCTGTATTAAAAAA+AGG | - | chr6.2:43694954-43694973 | None:intergenic | 25.0% |
| ! | TAATTAGTAGGTCGTTAATT+AGG | + | chr6.2:43693051-43693070 | MS.gene95436:intron | 25.0% |
| ! | TTAGGTAGATTATTAGTAAG+TGG | + | chr6.2:43693075-43693094 | MS.gene95436:intron | 25.0% |
| ! | TTTCATCAATGCATAAAGAA+AGG | - | chr6.2:43691778-43691797 | None:intergenic | 25.0% |
| !! | CATGAATTTGGTAACTATTA+AGG | + | chr6.2:43695317-43695336 | MS.gene95436:intron | 25.0% |
| !! | GAAATTAAGAGAAAGTGTAT+GGG | + | chr6.2:43693691-43693710 | MS.gene95436:intron | 25.0% |
| !! | TGAAATTAAGAGAAAGTGTA+TGG | + | chr6.2:43693690-43693709 | MS.gene95436:intron | 25.0% |
| !! | TGTTGTTCTTTTGTATTATC+GGG | + | chr6.2:43693997-43694016 | MS.gene95436:intron | 25.0% |
| !! | TTCTGTATTTTATTGAGGTT+AGG | + | chr6.2:43692179-43692198 | MS.gene95436:intron | 25.0% |
| !!! | AATGAATTTTGATCCATCAA+GGG | - | chr6.2:43692745-43692764 | None:intergenic | 25.0% |
| !!! | ATTTTGTTTTTCTAGGGTTT+TGG | + | chr6.2:43692849-43692868 | MS.gene95436:intron | 25.0% |
| !!! | CATCTGTTTATTTTCTTGTT+TGG | + | chr6.2:43693346-43693365 | MS.gene95436:intron | 25.0% |
| !!! | CTTGTTTTCTCATTGAAAAA+AGG | - | chr6.2:43694604-43694623 | None:intergenic | 25.0% |
| !!! | CTTTTTTTTTTGTTACAGAG+AGG | - | chr6.2:43692513-43692532 | None:intergenic | 25.0% |
| !!! | GTTTGTGTTTTTATACAGTA+AGG | + | chr6.2:43691730-43691749 | MS.gene95436:intron | 25.0% |
| !!! | TATGAGTTTTTTTTGTGATC+TGG | + | chr6.2:43691509-43691528 | MS.gene95436:intron | 25.0% |
| !!! | TGATCTGTTTTGTGTTTTTT+AGG | + | chr6.2:43692153-43692172 | MS.gene95436:intron | 25.0% |
| AAAAAGGTAGTGACTTATGT+AGG | - | chr6.2:43694588-43694607 | None:intergenic | 30.0% | |
| AAATTATTACCACTGTTGAC+GGG | + | chr6.2:43692627-43692646 | MS.gene95436:intron | 30.0% | |
| AAGCACAAAGTGATTTAACT+TGG | - | chr6.2:43693854-43693873 | None:intergenic | 30.0% | |
| ATCAAAGATGGAAAAGATAG+AGG | + | chr6.2:43695633-43695652 | MS.gene95436:CDS | 30.0% | |
| ATGTATGTTGTTCATTCATG+TGG | + | chr6.2:43694146-43694165 | MS.gene95436:intron | 30.0% | |
| ATTGAAATATCAACCCTTGA+TGG | + | chr6.2:43692729-43692748 | MS.gene95436:intron | 30.0% | |
| CAAATTATTACCACTGTTGA+CGG | + | chr6.2:43692626-43692645 | MS.gene95436:intron | 30.0% | |
| CAACCAAACATATACGAATA+TGG | + | chr6.2:43693904-43693923 | MS.gene95436:intron | 30.0% | |
| CAGAATGGACACAATAAATA+CGG | - | chr6.2:43694287-43694306 | None:intergenic | 30.0% | |
| CAGATAATGACAGAGAAATA+GGG | - | chr6.2:43694918-43694937 | None:intergenic | 30.0% | |
| CCATTCTGTGTAACAAAAAA+TGG | + | chr6.2:43694299-43694318 | MS.gene95436:intron | 30.0% | |
| CTTTACAAGTCATAGACTTA+AGG | + | chr6.2:43691329-43691348 | MS.gene95436:CDS | 30.0% | |
| CTTTATTGAGGCTATGAATT+AGG | + | chr6.2:43691955-43691974 | MS.gene95436:intron | 30.0% | |
| GAAAATGGTAGGCAATTATT+TGG | + | chr6.2:43692922-43692941 | MS.gene95436:intron | 30.0% | |
| GAAAGTTAGATGAAAATGGT+AGG | + | chr6.2:43692911-43692930 | MS.gene95436:intron | 30.0% | |
| GAACATAAATGTTGACAAAG+AGG | - | chr6.2:43694841-43694860 | None:intergenic | 30.0% | |
| GTATATAAAGGGGAATTCTT+GGG | + | chr6.2:43693160-43693179 | MS.gene95436:intron | 30.0% | |
| GTCATTATCTGATATTATCG+AGG | + | chr6.2:43694927-43694946 | MS.gene95436:intron | 30.0% | |
| GTCTTTATTCTTGCCATTAA+GGG | - | chr6.2:43691180-43691199 | None:intergenic | 30.0% | |
| GTTACTGTTAATTCGATTCT+AGG | + | chr6.2:43693373-43693392 | MS.gene95436:intron | 30.0% | |
| GTTGAAATTACGTCAAAAGT+GGG | - | chr6.2:43694561-43694580 | None:intergenic | 30.0% | |
| TACTAACAAATGACTAGACT+GGG | - | chr6.2:43692430-43692449 | None:intergenic | 30.0% | |
| TATGTGTTGTATTGCAGAAT+GGG | + | chr6.2:43695471-43695490 | MS.gene95436:intron | 30.0% | |
| TCAGATAATGACAGAGAAAT+AGG | - | chr6.2:43694919-43694938 | None:intergenic | 30.0% | |
| TGTATATAAAGGGGAATTCT+TGG | + | chr6.2:43693159-43693178 | MS.gene95436:intron | 30.0% | |
| TGTCTTATGTGTCTTTATTG+AGG | + | chr6.2:43691943-43691962 | MS.gene95436:intron | 30.0% | |
| TGTCTTTATTCTTGCCATTA+AGG | - | chr6.2:43691181-43691200 | None:intergenic | 30.0% | |
| TGTTGAAATTACGTCAAAAG+TGG | - | chr6.2:43694562-43694581 | None:intergenic | 30.0% | |
| TTAAAACACCCTCTCATATT+AGG | - | chr6.2:43693030-43693049 | None:intergenic | 30.0% | |
| TTATGTGTTGTATTGCAGAA+TGG | + | chr6.2:43695470-43695489 | MS.gene95436:intron | 30.0% | |
| TTGTCAAGAAGAAGAAGATT+GGG | + | chr6.2:43691353-43691372 | MS.gene95436:CDS | 30.0% | |
| TTTCAGTGCTTCATAATCAA+TGG | + | chr6.2:43692678-43692697 | MS.gene95436:intron | 30.0% | |
| TTTGTCAAGAAGAAGAAGAT+TGG | + | chr6.2:43691352-43691371 | MS.gene95436:CDS | 30.0% | |
| ! | AAACTCATTGGCTATATGAT+TGG | + | chr6.2:43691444-43691463 | MS.gene95436:CDS | 30.0% |
| ! | AACCTTTTTGATCTCGTTAA+GGG | - | chr6.2:43691274-43691293 | None:intergenic | 30.0% |
| ! | ACGGAATAACTTTTCTGTTT+AGG | + | chr6.2:43693197-43693216 | MS.gene95436:intron | 30.0% |
| ! | CATACTAGAATCGATTCAAT+TGG | + | chr6.2:43693738-43693757 | MS.gene95436:intron | 30.0% |
| ! | CGGAATAACTTTTCTGTTTA+GGG | + | chr6.2:43693198-43693217 | MS.gene95436:intron | 30.0% |
| ! | CTATCTTTTCCATCTTTGAT+GGG | - | chr6.2:43695633-43695652 | None:intergenic | 30.0% |
| ! | GACTGTTATGTTATGTGTTT+TGG | + | chr6.2:43692824-43692843 | MS.gene95436:intron | 30.0% |
| ! | GGATGTTCTGTATTTTATTG+AGG | + | chr6.2:43692174-43692193 | MS.gene95436:intron | 30.0% |
| ! | GGTTGATATTTCAATCACTT+AGG | - | chr6.2:43692724-43692743 | None:intergenic | 30.0% |
| ! | GTAACTCATCATATTTTACC+TGG | + | chr6.2:43694070-43694089 | MS.gene95436:intron | 30.0% |
| ! | GTTCTAGGCTGTAAAAAAAT+AGG | - | chr6.2:43694722-43694741 | None:intergenic | 30.0% |
| ! | TCATTCACACAATTCTAGAA+AGG | - | chr6.2:43694217-43694236 | None:intergenic | 30.0% |
| ! | TCTATCTTTTCCATCTTTGA+TGG | - | chr6.2:43695634-43695653 | None:intergenic | 30.0% |
| ! | TTGTTAGTAGCTGATGTTTT+GGG | + | chr6.2:43692441-43692460 | MS.gene95436:intron | 30.0% |
| ! | TTTGTTAGTAGCTGATGTTT+TGG | + | chr6.2:43692440-43692459 | MS.gene95436:intron | 30.0% |
| !! | ACAATGTTTTTGTTGAGGTT+AGG | + | chr6.2:43691562-43691581 | MS.gene95436:intron | 30.0% |
| !! | CAATGAATTTTGATCCATCA+AGG | - | chr6.2:43692746-43692765 | None:intergenic | 30.0% |
| !! | CGATCTGATTTGTGTATTTT+AGG | + | chr6.2:43691691-43691710 | MS.gene95436:intron | 30.0% |
| !! | GATTTTAGGTGATTTCACTT+TGG | + | chr6.2:43692765-43692784 | MS.gene95436:intron | 30.0% |
| !! | GGGTGTTTTAAGTAATTAGT+AGG | + | chr6.2:43693039-43693058 | MS.gene95436:intron | 30.0% |
| !! | GTTGTCGATTTATGATGTTT+GGG | + | chr6.2:43693566-43693585 | MS.gene95436:intron | 30.0% |
| !! | TAGGTTTTTCGAAGGAAAAA+TGG | - | chr6.2:43694703-43694722 | None:intergenic | 30.0% |
| !! | TCATTTGCTGTGTAAAATAC+AGG | + | chr6.2:43695051-43695070 | MS.gene95436:intron | 30.0% |
| !! | TGTGGGTTTTATAGTCTTAA+TGG | - | chr6.2:43694627-43694646 | None:intergenic | 30.0% |
| !! | TGTTGTCGATTTATGATGTT+TGG | + | chr6.2:43693565-43693584 | MS.gene95436:intron | 30.0% |
| !!! | AGGCTCTTAATTTTTTTCAG+TGG | + | chr6.2:43694965-43694984 | MS.gene95436:intron | 30.0% |
| !!! | CCATTTTTTGTTACACAGAA+TGG | - | chr6.2:43694302-43694321 | None:intergenic | 30.0% |
| !!! | TTTTAGAGTGTAAAGTGAGT+AGG | + | chr6.2:43692010-43692029 | MS.gene95436:intron | 30.0% |
| AAAAAGGTTCCAGAAGATGA+AGG | + | chr6.2:43691285-43691304 | MS.gene95436:CDS | 35.0% | |
| AAAAGGTTCCAGAAGATGAA+GGG | + | chr6.2:43691286-43691305 | MS.gene95436:CDS | 35.0% | |
| AAACAGACTGGTGTTCTATT+TGG | - | chr6.2:43694756-43694775 | None:intergenic | 35.0% | |
| AATGGTAGGCAATTATTTGG+AGG | + | chr6.2:43692925-43692944 | MS.gene95436:intron | 35.0% | |
| ACTACATTACAACCAAGTGA+GGG | - | chr6.2:43692476-43692495 | None:intergenic | 35.0% | |
| ATATAGCATTCAATGCTCCA+TGG | + | chr6.2:43693938-43693957 | MS.gene95436:intron | 35.0% | |
| ATCAACACTTCTCTTGCATT+TGG | - | chr6.2:43691234-43691253 | None:intergenic | 35.0% | |
| ATCTCAATTTCGTGATCATC+AGG | - | chr6.2:43695511-43695530 | None:intergenic | 35.0% | |
| ATGCATCTTACTACTAAAGC+TGG | + | chr6.2:43695340-43695359 | MS.gene95436:intron | 35.0% | |
| ATGGTAGGCAATTATTTGGA+GGG | + | chr6.2:43692926-43692945 | MS.gene95436:intron | 35.0% | |
| CAAGATGAACTCAAACTCAT+TGG | + | chr6.2:43691432-43691451 | MS.gene95436:CDS | 35.0% | |
| CAGTGGTTCTTATTCTTGTT+TGG | + | chr6.2:43694982-43695001 | MS.gene95436:intron | 35.0% | |
| CATATAGGAATAGAGAGACT+TGG | - | chr6.2:43694882-43694901 | None:intergenic | 35.0% | |
| CTACTAACAAATGACTAGAC+TGG | - | chr6.2:43692431-43692450 | None:intergenic | 35.0% | |
| CTTCATGACTGTTTCATAGT+TGG | + | chr6.2:43694483-43694502 | MS.gene95436:intron | 35.0% | |
| GCAAGAATAAAGACAACAAC+AGG | + | chr6.2:43691186-43691205 | MS.gene95436:CDS | 35.0% | |
| GGAGACATGCAAAAACATAT+AGG | - | chr6.2:43694897-43694916 | None:intergenic | 35.0% | |
| GGTGCCTTTATTGATACAAA+TGG | - | chr6.2:43693309-43693328 | None:intergenic | 35.0% | |
| GTAGGTCGTTAATTAGGTTT+AGG | + | chr6.2:43693057-43693076 | MS.gene95436:intron | 35.0% | |
| GTGAGTATGATCAATAGTCT+CGG | + | chr6.2:43692302-43692321 | MS.gene95436:intron | 35.0% | |
| GTGGCTAAAACAAGAAAAGA+TGG | + | chr6.2:43695661-43695680 | MS.gene95436:CDS | 35.0% | |
| GTTACTAGAGAAAAACAGAC+TGG | - | chr6.2:43694768-43694787 | None:intergenic | 35.0% | |
| GTTCTATTTGGATACAGTTG+TGG | - | chr6.2:43694744-43694763 | None:intergenic | 35.0% | |
| TCAACACTTCTCTTGCATTT+GGG | - | chr6.2:43691233-43691252 | None:intergenic | 35.0% | |
| TCTCAATTTCGTGATCATCA+GGG | - | chr6.2:43695510-43695529 | None:intergenic | 35.0% | |
| TGATGATCACGAAATTGAGA+TGG | + | chr6.2:43695510-43695529 | MS.gene95436:CDS | 35.0% | |
| TTTAGGTGATTTCACTTTGG+TGG | + | chr6.2:43692768-43692787 | MS.gene95436:intron | 35.0% | |
| ! | AATTGTGTGAATGAGTACTG+AGG | + | chr6.2:43694223-43694242 | MS.gene95436:intron | 35.0% |
| ! | GAACCTTTTTGATCTCGTTA+AGG | - | chr6.2:43691275-43691294 | None:intergenic | 35.0% |
| ! | GTTCTTTTGTATTATCGGGT+TGG | + | chr6.2:43694001-43694020 | MS.gene95436:intron | 35.0% |
| ! | TACATAGAGCATTATGTACC+AGG | - | chr6.2:43694091-43694110 | None:intergenic | 35.0% |
| ! | TGTTAGTAGCTGATGTTTTG+GGG | + | chr6.2:43692442-43692461 | MS.gene95436:intron | 35.0% |
| !! | AATTCGATTCTAGGATCCAT+GGG | + | chr6.2:43693382-43693401 | MS.gene95436:intron | 35.0% |
| !! | ATTGTGTGAATGAGTACTGA+GGG | + | chr6.2:43694224-43694243 | MS.gene95436:intron | 35.0% |
| !! | TAATTCGATTCTAGGATCCA+TGG | + | chr6.2:43693381-43693400 | MS.gene95436:intron | 35.0% |
| !!! | ATTCTTGGGAGTTTTAGAGT+TGG | + | chr6.2:43693174-43693193 | MS.gene95436:intron | 35.0% |
| !!! | CCTTTGATAGGAAGTGTTTT+CGG | + | chr6.2:43692058-43692077 | MS.gene95436:intron | 35.0% |
| !!! | CGAGGACCTTTTTTTAATAC+AGG | + | chr6.2:43694945-43694964 | MS.gene95436:intron | 35.0% |
| !!! | GCTACAGATAGTAGCTTTTT+TGG | - | chr6.2:43693764-43693783 | None:intergenic | 35.0% |
| AACAAATGACTAGACTGGGT+CGG | - | chr6.2:43692426-43692445 | None:intergenic | 40.0% | |
| AAGACAACAACAGGAATCGT+AGG | + | chr6.2:43691195-43691214 | MS.gene95436:CDS | 40.0% | |
| AGACACCTTAGATGCACTTA+TGG | + | chr6.2:43695603-43695622 | MS.gene95436:CDS | 40.0% | |
| AGGATTCATCTGAGTTGTGT+CGG | + | chr6.2:43693228-43693247 | MS.gene95436:intron | 40.0% | |
| AGGTGTCTTGAAACTCCTTA+GGG | - | chr6.2:43695591-43695610 | None:intergenic | 40.0% | |
| ATCCATGGGTTCCTATCATT+GGG | + | chr6.2:43693396-43693415 | MS.gene95436:intron | 40.0% | |
| ATTGAGAATCGTCTTGGTTG+TGG | + | chr6.2:43691381-43691400 | MS.gene95436:CDS | 40.0% | |
| ATTGCTCCAACACCTTTGAT+AGG | + | chr6.2:43692046-43692065 | MS.gene95436:intron | 40.0% | |
| CCAGATGCTTTAGCTAATCT+TGG | + | chr6.2:43692360-43692379 | MS.gene95436:intron | 40.0% | |
| CCGAAAACACTTCCTATCAA+AGG | - | chr6.2:43692061-43692080 | None:intergenic | 40.0% | |
| CGTTAGGACCTAATATGAGA+GGG | + | chr6.2:43693019-43693038 | MS.gene95436:intron | 40.0% | |
| CTACATTACAACCAAGTGAG+GGG | - | chr6.2:43692475-43692494 | None:intergenic | 40.0% | |
| GACCCTTAACGAGATCAAAA+AGG | + | chr6.2:43691269-43691288 | MS.gene95436:CDS | 40.0% | |
| GACTACATTACAACCAAGTG+AGG | - | chr6.2:43692477-43692496 | None:intergenic | 40.0% | |
| GAGAAGATTGAGAATCGTCT+TGG | + | chr6.2:43691375-43691394 | MS.gene95436:CDS | 40.0% | |
| GGAAAAGATAGAGGAACTTG+TGG | + | chr6.2:43695642-43695661 | MS.gene95436:CDS | 40.0% | |
| GTTGAAACTCTCTAAACGTG+CGG | - | chr6.2:43693881-43693900 | None:intergenic | 40.0% | |
| TATTGCAGAATGGGATCCTT+GGG | + | chr6.2:43695480-43695499 | MS.gene95436:intron | 40.0% | |
| TGTATGGGTAGTTAGGTAAG+AGG | + | chr6.2:43693706-43693725 | MS.gene95436:intron | 40.0% | |
| TTACGATACCCTTCATCTTC+TGG | - | chr6.2:43691297-43691316 | None:intergenic | 40.0% | |
| TTGGATACAGTTGTGGTTCT+AGG | - | chr6.2:43694737-43694756 | None:intergenic | 40.0% | |
| TTTGTTGCAAATTGGGCGTT+AGG | + | chr6.2:43693003-43693022 | MS.gene95436:intron | 40.0% | |
| ! | AAAAATGGCGTTGAACTTGG+CGG | - | chr6.2:43694688-43694707 | None:intergenic | 40.0% |
| ! | AAGGTGTCTTGAAACTCCTT+AGG | - | chr6.2:43695592-43695611 | None:intergenic | 40.0% |
| ! | ACACTTCCTATCAAAGGTGT+TGG | - | chr6.2:43692055-43692074 | None:intergenic | 40.0% |
| ! | AGGAAAAATGGCGTTGAACT+TGG | - | chr6.2:43694691-43694710 | None:intergenic | 40.0% |
| ! | CCAAGATTAGCTAAAGCATC+TGG | - | chr6.2:43692363-43692382 | None:intergenic | 40.0% |
| ! | GAGAAAGTGTATGGGTAGTT+AGG | + | chr6.2:43693699-43693718 | MS.gene95436:intron | 40.0% |
| ! | GTAATGTAGTCCCTTTTTCC+CGG | + | chr6.2:43692486-43692505 | MS.gene95436:intron | 40.0% |
| ! | GTTTTTGACACTGACACATG+TGG | + | chr6.2:43692579-43692598 | MS.gene95436:intron | 40.0% |
| ! | TTTCTGTTTAGGGCTAGAGT+AGG | + | chr6.2:43693208-43693227 | MS.gene95436:intron | 40.0% |
| ! | TTTGGGATGAAGTGTGTGTT+TGG | + | chr6.2:43693443-43693462 | MS.gene95436:intron | 40.0% |
| !! | TATCAAAGGTGTTGGAGCAA+TGG | - | chr6.2:43692047-43692066 | None:intergenic | 40.0% |
| !!! | CTTTTTGGGTTCTTCATTGG+AGG | - | chr6.2:43695698-43695717 | None:intergenic | 40.0% |
| !!! | TGGCTTTTTGGGTTCTTCAT+TGG | - | chr6.2:43695701-43695720 | None:intergenic | 40.0% |
| !!! | TTGGGAGTTTTAGAGTTGGA+CGG | + | chr6.2:43693178-43693197 | MS.gene95436:intron | 40.0% |
| !!! | TTTTTTGTTACAGAGAGGGC+CGG | - | chr6.2:43692508-43692527 | None:intergenic | 40.0% |
| AAAGTGGGCACAACTTGTGT+CGG | - | chr6.2:43694546-43694565 | None:intergenic | 45.0% | |
| AGTTAGGTAAGAGGACAGCA+AGG | + | chr6.2:43693715-43693734 | MS.gene95436:intron | 45.0% | |
| ATTGCAGAATGGGATCCTTG+GGG | + | chr6.2:43695481-43695500 | MS.gene95436:intron | 45.0% | |
| GATCCATGGGTTCCTATCAT+TGG | + | chr6.2:43693395-43693414 | MS.gene95436:intron | 45.0% | |
| GCGTTAGGACCTAATATGAG+AGG | + | chr6.2:43693018-43693037 | MS.gene95436:intron | 45.0% | |
| GTATTGCAGAATGGGATCCT+TGG | + | chr6.2:43695479-43695498 | MS.gene95436:intron | 45.0% | |
| GTCAGCCATAAGTGCATCTA+AGG | - | chr6.2:43695611-43695630 | None:intergenic | 45.0% | |
| TAGAGAGACTTGGAACAGAG+AGG | - | chr6.2:43694872-43694891 | None:intergenic | 45.0% | |
| TATGGCTGACCCATCAAAGA+TGG | + | chr6.2:43695621-43695640 | MS.gene95436:CDS | 45.0% | |
| TCCATGGGTTCCTATCATTG+GGG | + | chr6.2:43693397-43693416 | MS.gene95436:intron | 45.0% | |
| TCTAAGTGTCCGACATGTGT+TGG | + | chr6.2:43694407-43694426 | MS.gene95436:intron | 45.0% | |
| TGGTGTCTGACATCAACATG+TGG | + | chr6.2:43694427-43694446 | MS.gene95436:intron | 45.0% | |
| TGTCAGACACCAACACATGT+CGG | - | chr6.2:43694419-43694438 | None:intergenic | 45.0% | |
| TTGTGTCGGAGCTTTGCTTT+GGG | + | chr6.2:43693242-43693261 | MS.gene95436:intron | 45.0% | |
| ! | CACGTGTGTTGTGTTGATGT+CGG | - | chr6.2:43692100-43692119 | None:intergenic | 45.0% |
| ! | GTGTGTGCGCTTTTCAATGT+GGG | + | chr6.2:43692881-43692900 | MS.gene95436:intron | 45.0% |
| ! | TATTACCACTGTTGACGGGT+TGG | + | chr6.2:43692631-43692650 | MS.gene95436:intron | 45.0% |
| ! | TGTGTGTGCGCTTTTCAATG+TGG | + | chr6.2:43692880-43692899 | MS.gene95436:intron | 45.0% |
| ! | TTTTCAGCACCCCCAATGAT+AGG | - | chr6.2:43693410-43693429 | None:intergenic | 45.0% |
| ! | TTTTTGTTACAGAGAGGGCC+GGG | - | chr6.2:43692507-43692526 | None:intergenic | 45.0% |
| !! | ACAAGAAAAGATGGTGCTGC+TGG | + | chr6.2:43695670-43695689 | MS.gene95436:CDS | 45.0% |
| !! | ATTGGGGGTGCTGAAAAAGT+AGG | + | chr6.2:43693413-43693432 | MS.gene95436:intron | 45.0% |
| !! | GAAGTGTGTGTTTGGTTCTG+CGG | + | chr6.2:43693451-43693470 | MS.gene95436:intron | 45.0% |
| !! | GAATGAGTACTGAGGGAAAC+AGG | + | chr6.2:43694231-43694250 | MS.gene95436:intron | 45.0% |
| !! | TCACATCGGTGTCACTAACT+AGG | - | chr6.2:43695178-43695197 | None:intergenic | 45.0% |
| !! | TTGGGGGTGCTGAAAAAGTA+GGG | + | chr6.2:43693414-43693433 | MS.gene95436:intron | 45.0% |
| AAGTGGGCACAACTTGTGTC+GGG | - | chr6.2:43694545-43694564 | None:intergenic | 50.0% | |
| ACCACAAACACCTGTGCAGA+AGG | + | chr6.2:43692540-43692559 | MS.gene95436:intron | 50.0% | |
| ACCTTCTGCACAGGTGTTTG+TGG | - | chr6.2:43692544-43692563 | None:intergenic | 50.0% | |
| ATGTGAGACACCTTCTGCAC+AGG | - | chr6.2:43692553-43692572 | None:intergenic | 50.0% | |
| CCATGGGTTCCTATCATTGG+GGG | + | chr6.2:43693398-43693417 | MS.gene95436:intron | 50.0% | |
| CGTTGAACTTGGCGGTTGAT+TGG | - | chr6.2:43694680-43694699 | None:intergenic | 50.0% | |
| GAATCGTCTTGGTTGTGGTC+AGG | + | chr6.2:43691386-43691405 | MS.gene95436:CDS | 50.0% | |
| GTTGTGTCGGAGCTTTGCTT+TGG | + | chr6.2:43693241-43693260 | MS.gene95436:intron | 50.0% | |
| TAACACCAACCCGTCAACAG+TGG | - | chr6.2:43692639-43692658 | None:intergenic | 50.0% | |
| TGAAACTCCTTAGGGAGACG+AGG | - | chr6.2:43695583-43695602 | None:intergenic | 50.0% | |
| TGAGGAACGTGCTTCGGAAT+TGG | - | chr6.2:43695550-43695569 | None:intergenic | 50.0% | |
| TGATCATCAGGGATACCCCA+AGG | - | chr6.2:43695499-43695518 | None:intergenic | 50.0% | |
| ! | TGTTGTGTTGATGTCGGACG+CGG | - | chr6.2:43692094-43692113 | None:intergenic | 50.0% |
| !! | AGGTGTTGGAGCAATGGAGA+CGG | - | chr6.2:43692041-43692060 | None:intergenic | 50.0% |
| !! | TGACGGGTTGGTGTTATGTC+TGG | + | chr6.2:43692643-43692662 | MS.gene95436:intron | 50.0% |
| AACTCCTTAGGGAGACGAGG+AGG | - | chr6.2:43695580-43695599 | None:intergenic | 55.0% | |
| AACTTGTGTCGGGGACTCGA+GGG | - | chr6.2:43694535-43694554 | None:intergenic | 55.0% | |
| ACAGAGAGGGCCGGGAAAAA+GGG | - | chr6.2:43692499-43692518 | None:intergenic | 55.0% | |
| AGTGGGCACAACTTGTGTCG+GGG | - | chr6.2:43694544-43694563 | None:intergenic | 55.0% | |
| CCCCCAATGATAGGAACCCA+TGG | - | chr6.2:43693401-43693420 | None:intergenic | 55.0% | |
| TACAGAGAGGGCCGGGAAAA+AGG | - | chr6.2:43692500-43692519 | None:intergenic | 55.0% | |
| ! | CGGTGTTGAGGAACGTGCTT+CGG | - | chr6.2:43695556-43695575 | None:intergenic | 55.0% |
| CAACTTGTGTCGGGGACTCG+AGG | - | chr6.2:43694536-43694555 | None:intergenic | 60.0% | |
| CCTTAGGGAGACGAGGAGGA+CGG | - | chr6.2:43695576-43695595 | None:intergenic | 60.0% | |
| GGGGATAGCTACCCCTCACT+TGG | + | chr6.2:43692461-43692480 | MS.gene95436:intron | 60.0% | |
| ! | AGACGAGGAGGACGGTGTTG+AGG | - | chr6.2:43695568-43695587 | None:intergenic | 60.0% |
| !! | CGGGGACTCGAGGGTATCTA+GGG | - | chr6.2:43694526-43694545 | None:intergenic | 60.0% |
| !! | GGGGACTCGAGGGTATCTAG+GGG | - | chr6.2:43694525-43694544 | None:intergenic | 60.0% |
| !! | TCGGGGACTCGAGGGTATCT+AGG | - | chr6.2:43694527-43694546 | None:intergenic | 60.0% |
| CCGTCCTCCTCGTCTCCCTA+AGG | + | chr6.2:43695573-43695592 | MS.gene95436:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 43691168 | 43695723 | 43691168 | ID=MS.gene95436 |
| chr6.2 | mRNA | 43691168 | 43695723 | 43691168 | ID=MS.gene95436.t1;Parent=MS.gene95436 |
| chr6.2 | exon | 43691168 | 43691465 | 43691168 | ID=MS.gene95436.t1.exon1;Parent=MS.gene95436.t1 |
| chr6.2 | CDS | 43691168 | 43691465 | 43691168 | ID=cds.MS.gene95436.t1;Parent=MS.gene95436.t1 |
| chr6.2 | exon | 43695488 | 43695723 | 43695488 | ID=MS.gene95436.t1.exon2;Parent=MS.gene95436.t1 |
| chr6.2 | CDS | 43695488 | 43695723 | 43695488 | ID=cds.MS.gene95436.t1;Parent=MS.gene95436.t1 |
| Gene Sequence |
| Protein sequence |
