AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96186

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96186.t1 MTR_2g020510 94.405 697 35 1 1 697 1 693 0.0 1362
MS.gene96186.t1 MTR_2g020470 84.692 699 81 3 1 697 1 675 0.0 1199
MS.gene96186.t1 MTR_2g020450 84.593 701 98 5 1 697 1 695 0.0 1179
MS.gene96186.t1 MTR_5g085340 35.021 731 418 11 12 693 26 748 2.28e-130 403
MS.gene96186.t1 MTR_5g085350 35.286 734 397 18 9 693 23 727 8.27e-127 393
MS.gene96186.t1 MTR_5g085350 34.672 747 397 18 9 693 23 740 1.86e-124 387
MS.gene96186.t1 MTR_3g051060 33.829 739 407 19 9 693 28 738 8.42e-117 367
MS.gene96186.t1 MTR_5g085360 32.320 724 430 13 12 689 26 735 4.17e-111 353
MS.gene96186.t1 MTR_3g058570 47.727 308 154 2 392 693 82 388 2.99e-89 284
MS.gene96186.t1 MTR_2g017930 27.059 680 430 10 13 676 8 637 1.03e-67 235
MS.gene96186.t1 MTR_3g050500 39.203 301 175 4 395 688 429 728 1.63e-58 211
MS.gene96186.t1 MTR_3g050500 33.673 196 122 5 14 204 32 224 1.39e-19 94.0
MS.gene96186.t1 MTR_5g028130 35.443 316 185 5 375 679 24 331 1.75e-53 187
MS.gene96186.t1 MTR_3g055310 33.993 303 197 2 377 677 38 339 1.89e-53 188
MS.gene96186.t1 MTR_3g055310 33.993 303 197 2 377 677 101 402 1.24e-52 187
MS.gene96186.t1 MTR_3g055310 33.993 303 197 2 377 677 153 454 3.68e-52 187
MS.gene96186.t1 MTR_3g055310 33.993 303 197 2 377 677 181 482 5.03e-52 188
MS.gene96186.t1 MTR_3g055310 33.993 303 197 2 377 677 179 480 5.78e-52 187
MS.gene96186.t1 MTR_3g055310 33.993 303 197 2 377 677 206 507 1.31e-51 187
MS.gene96186.t1 MTR_2g438740 33.663 303 195 3 381 679 262 562 5.16e-50 184
MS.gene96186.t1 MTR_2g438740 28.641 206 137 3 9 214 45 240 3.19e-15 79.7
MS.gene96186.t1 MTR_5g091220 34.948 289 187 1 394 682 313 600 2.51e-49 182
MS.gene96186.t1 MTR_5g091220 24.107 224 156 3 5 218 21 240 8.20e-11 65.9
MS.gene96186.t1 MTR_5g028190 35.390 308 194 4 375 679 222 527 1.23e-47 176
MS.gene96186.t1 MTR_5g028190 25.751 233 142 7 28 245 3 219 4.47e-13 72.8
MS.gene96186.t1 MTR_2g438400 34.448 299 192 3 382 679 245 540 3.69e-47 176
MS.gene96186.t1 MTR_2g438400 27.368 190 129 2 12 201 20 200 1.09e-11 68.6
MS.gene96186.t1 MTR_2g438440 33.651 315 191 7 382 692 386 686 5.58e-45 172
MS.gene96186.t1 MTR_2g438720 35.417 288 183 3 394 679 401 687 5.78e-45 172
MS.gene96186.t1 MTR_2g438640 33.439 314 193 6 382 692 391 691 2.27e-44 170
MS.gene96186.t1 MTR_5g028450 36.207 290 173 5 394 675 1 286 5.58e-44 160
MS.gene96186.t1 MTR_2g438700 34.983 303 182 6 394 692 399 690 7.46e-44 168
MS.gene96186.t1 MTR_2g438760 30.796 289 190 4 397 679 273 557 6.16e-40 155
MS.gene96186.t1 MTR_2g438760 31.414 191 116 4 9 196 51 229 5.18e-16 82.0
MS.gene96186.t1 MTR_2g438640 32.166 314 171 7 382 692 391 665 2.71e-39 154
MS.gene96186.t1 MTR_3g455790 29.181 281 198 1 394 674 308 587 5.59e-37 147
MS.gene96186.t1 MTR_5g028930 32.550 298 190 6 394 684 321 614 1.88e-36 145
MS.gene96186.t1 MTR_3g452020 28.114 281 201 1 394 674 133 412 1.13e-34 137
MS.gene96186.t1 MTR_3g452020 28.114 281 201 1 394 674 309 588 8.19e-34 137
MS.gene96186.t1 MTR_2g438640 35.678 199 115 4 496 692 401 588 3.75e-29 123
MS.gene96186.t1 MTR_6g017215 30.270 185 128 1 494 678 6 189 3.12e-28 114
MS.gene96186.t1 MTR_3g058550 38.265 196 100 6 35 214 2 192 5.07e-27 110
MS.gene96186.t1 MTR_5g028840 33.333 183 112 3 493 671 5 181 3.62e-24 101
MS.gene96186.t1 MTR_5g028110 36.496 137 80 1 539 668 29 165 2.69e-23 97.8
MS.gene96186.t1 MTR_5g028690 31.915 188 124 2 496 679 43 230 2.27e-22 97.1
MS.gene96186.t1 MTR_5g028900 34.932 146 83 2 496 641 4 137 4.66e-20 87.8
MS.gene96186.t1 MTR_1g113760 25.338 296 210 7 397 684 243 535 6.95e-17 84.7
MS.gene96186.t1 MTR_1g113760 27.027 185 126 5 13 195 27 204 6.57e-11 65.9
MS.gene96186.t1 MTR_2g438470 35.338 133 84 2 439 570 366 497 4.05e-16 82.0
MS.gene96186.t1 MTR_3g051020 33.117 154 97 3 14 164 31 181 1.08e-15 77.0
MS.gene96186.t1 MTR_1g113820 23.197 319 232 7 382 697 264 572 1.59e-15 80.9
MS.gene96186.t1 MTR_2g017800 25.688 218 137 5 13 212 8 218 8.78e-15 75.5
MS.gene96186.t1 MTR_2g438580 39.506 81 48 1 509 589 3 82 1.57e-14 69.7
MS.gene96186.t1 MTR_1g113730 24.038 312 224 7 384 686 36 343 5.50e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96186.t1 AT3G18670 33.993 303 194 5 397 695 296 596 4.85e-48 179
MS.gene96186.t1 AT3G18670 27.313 227 155 4 9 230 53 274 1.77e-13 74.3
MS.gene96186.t1 AT3G18670 33.993 303 194 5 397 695 351 651 5.97e-48 179
MS.gene96186.t1 AT3G18670 28.910 211 143 3 9 214 53 261 1.63e-16 84.0
MS.gene96186.t1 AT5G35810 36.000 300 175 8 392 678 31 326 1.75e-45 166
MS.gene96186.t1 AT5G04730 34.768 302 184 5 381 675 285 580 3.17e-45 171
MS.gene96186.t1 AT5G04700 38.153 249 152 2 429 675 399 647 6.01e-43 165
MS.gene96186.t1 AT5G04690 34.572 269 171 4 431 696 359 625 4.67e-38 150
MS.gene96186.t1 AT3G54065 37.850 214 123 3 480 687 8 217 6.44e-38 141
MS.gene96186.t1 AT5G04690 34.572 269 171 4 431 696 379 645 6.82e-38 150
MS.gene96186.t1 AT5G04690 34.572 269 171 4 431 696 393 659 7.48e-38 150
MS.gene96186.t1 AT5G04680 35.271 258 155 4 429 675 263 519 4.06e-34 137
MS.gene96186.t1 AT5G04680 35.271 258 155 4 429 675 372 628 6.05e-34 138
MS.gene96186.t1 AT5G04680 35.271 258 155 4 429 675 386 642 6.83e-34 138
MS.gene96186.t1 AT5G04680 35.271 258 155 4 429 675 415 671 1.18e-33 137

Find 134 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTTGGCACTTCAAATAAT+TGG 0.180342 2.2:+64655272 MS.gene96186:intron
AACCATTGCTCGCGAAATTT+TGG 0.216103 2.2:+64656036 MS.gene96186:CDS
ATCTTTGCCTCCAATACTTC+AGG 0.230897 2.2:-64654682 None:intergenic
CAGACATGTTGCAGCATATA+TGG 0.231231 2.2:-64658473 None:intergenic
GAACAAGAATGTTGTTCTTT+TGG 0.248304 2.2:+64657300 MS.gene96186:CDS
AGTCCTCATGTTGAAGAATT+TGG 0.251360 2.2:+64657103 MS.gene96186:CDS
TTTCTATGAACGTTATAATA+AGG 0.259052 2.2:+64658015 MS.gene96186:CDS
CCTTCATATCTTTGTTGAAT+AGG 0.261530 2.2:+64655840 MS.gene96186:CDS
AACCCTACAAGAAGCTTTCT+TGG 0.265236 2.2:-64658355 None:intergenic
TTATAACGTTCATAGAAATT+AGG 0.268291 2.2:-64658010 None:intergenic
TGCATCTTGCTGCTACTTAT+AGG 0.285788 2.2:+64657425 MS.gene96186:CDS
TGAGCAAGATTCTGCAGTTT+TGG 0.300345 2.2:-64658110 None:intergenic
GTGCAGCTTCCAAAACAATT+AGG 0.314136 2.2:-64655365 None:intergenic
GCTAGGAAGCCTAATTGTTT+TGG 0.323574 2.2:+64655356 MS.gene96186:CDS
TTGTAAAAGAAGGTAGTAAA+TGG 0.341101 2.2:+64658083 MS.gene96186:CDS
TCTGTACTTTGATCTGAGTT+TGG 0.341942 2.2:+64658528 MS.gene96186:CDS
ACCAAAGTATTCACTGGATA+TGG 0.355789 2.2:-64655067 None:intergenic
AATGAGGATGGGATCTCTTC+TGG 0.357932 2.2:-64654893 None:intergenic
CATCACTATCCATTGAACTA+TGG 0.365853 2.2:+64655806 MS.gene96186:CDS
TTACCAAGAAAGCTTCTTGT+AGG 0.369536 2.2:+64658352 MS.gene96186:CDS
GATAAACTGCAAATCTCATC+TGG 0.369859 2.2:-64658450 None:intergenic
GGATGTTCCTGCACATATCT+TGG 0.372166 2.2:-64654789 None:intergenic
TATACAGTTTGTTAAATAAG+AGG 0.373856 2.2:+64657347 MS.gene96186:CDS
TTTACAGCATTCACAAGCTT+TGG 0.376948 2.2:-64655302 None:intergenic
TTCAAACCGAGATGTGAGTA+TGG 0.377547 2.2:-64658308 None:intergenic
ATCACTGGTTCCCACCCAAT+TGG 0.380459 2.2:+64656596 MS.gene96186:CDS
TGTGAAATCATACTTGTATA+AGG 0.382875 2.2:-64657074 None:intergenic
GAAGAATTTGGTGGTGGTGG+TGG 0.390543 2.2:+64657115 MS.gene96186:CDS
CACATCTATAGCATCTGTTC+TGG 0.402327 2.2:+64658390 MS.gene96186:CDS
TCGGATCATGGATTCCCAAT+TGG 0.407165 2.2:-64656611 None:intergenic
GTATGGAAAGAAACAAAATA+AGG 0.413629 2.2:-64658291 None:intergenic
CGGATCATGGATTCCCAATT+GGG 0.415680 2.2:-64656610 None:intergenic
CTTCATGTTGCAGCAGAGCT+TGG 0.417345 2.2:+64654844 MS.gene96186:CDS
TATCTTAATTGCAGCAAAGA+TGG 0.421596 2.2:+64657210 MS.gene96186:CDS
ATCTTTGCTGCAATTAAGAT+AGG 0.424483 2.2:-64657208 None:intergenic
TTCATGTTGCAGCAGAGCTT+GGG 0.430517 2.2:+64654845 MS.gene96186:CDS
TAGTCTGAGTTTGTGCTTGA+AGG 0.435141 2.2:-64655781 None:intergenic
GATTCTTGATCAGGACCGCC+TGG 0.440459 2.2:-64658184 None:intergenic
CTTATAGGAGGTTTAAGCCT+TGG 0.448660 2.2:+64657440 MS.gene96186:CDS
TTTCGTCAAGTTGATATCAA+TGG 0.450346 2.2:+64657391 MS.gene96186:CDS
TCTTTGCCTCCAATACTTCA+GGG 0.455629 2.2:-64654681 None:intergenic
TTTAAGCCTTGGCGTGTGCC+TGG 0.460405 2.2:+64657451 MS.gene96186:CDS
TCACTGGTTCCCACCCAATT+GGG 0.470490 2.2:+64656597 MS.gene96186:CDS
TATGAACGTTATAATAAGGA+TGG 0.471736 2.2:+64658019 MS.gene96186:CDS
CGAAATTTCGATAGGAAATG+AGG 0.474414 2.2:-64654909 None:intergenic
AAAATGAAGTTATTGAGAAG+AGG 0.477595 2.2:+64657173 MS.gene96186:CDS
TGCATTTGCATCGCAGCACC+AGG 0.478373 2.2:-64657469 None:intergenic
CAAAATAAGGGCTGTGACAG+AGG 0.478651 2.2:-64658278 None:intergenic
GTTGAAGAATTTGGTGGTGG+TGG 0.479544 2.2:+64657112 MS.gene96186:CDS
TACCGACACCGAAAATGATT+AGG 0.481204 2.2:-64656660 None:intergenic
ACCATATCCAGTGAATACTT+TGG 0.482222 2.2:+64655066 MS.gene96186:CDS
GGTATGCCGGATTCTTGATC+AGG 0.485024 2.2:-64658193 None:intergenic
TATGGAAAGAAACAAAATAA+GGG 0.487722 2.2:-64658290 None:intergenic
TTCTTTCCATACTCACATCT+CGG 0.490447 2.2:+64658302 MS.gene96186:CDS
TTCTCTCCATTGCCCTCTCA+TGG 0.496208 2.2:-64654635 None:intergenic
CCTATTCAACAAAGATATGA+AGG 0.498588 2.2:-64655840 None:intergenic
GGCGGTCCTGATCAAGAATC+CGG 0.500801 2.2:+64658187 MS.gene96186:CDS
GTTCTGGTCTCATTCTGTGC+AGG 0.507575 2.2:+64658406 MS.gene96186:CDS
CTAAGAATGCAAAACTCAAA+GGG 0.508121 2.2:+64654811 MS.gene96186:CDS
TCCATTGCCCTCTCATGGCA+TGG 0.508412 2.2:-64654630 None:intergenic
TACCAAAATTTCGCGAGCAA+TGG 0.510348 2.2:-64656038 None:intergenic
CAAGTGGTGCGTGTGTATCA+AGG 0.510861 2.2:-64658063 None:intergenic
TTCATAGAAATTAGGTGGCA+TGG 0.511469 2.2:-64658002 None:intergenic
AGACATGTTGCAGCATATAT+GGG 0.513588 2.2:-64658472 None:intergenic
ACTTCTAATCCTTGCAATGA+AGG 0.515634 2.2:+64656633 MS.gene96186:CDS
CCTAAGAATGCAAAACTCAA+AGG 0.517719 2.2:+64654810 MS.gene96186:CDS
AGTCATCATCTTTGTTGTGT+TGG 0.519193 2.2:-64655002 None:intergenic
ATCTTAATTGCAGCAAAGAT+GGG 0.523320 2.2:+64657211 MS.gene96186:CDS
ATTTCGATAGGAAATGAGGA+TGG 0.526430 2.2:-64654905 None:intergenic
AAGGATTAGAAGTCGGATCA+TGG 0.527536 2.2:-64656623 None:intergenic
ATGCATGTTCCATAGTTCAA+TGG 0.529696 2.2:-64655815 None:intergenic
ACATAAGCCAAGATATGTGC+AGG 0.531025 2.2:+64654782 MS.gene96186:CDS
TACCAAGAAAGCTTCTTGTA+GGG 0.531662 2.2:+64658353 MS.gene96186:CDS
TTATACAAGTATGATTTCAC+AGG 0.538164 2.2:+64657076 MS.gene96186:CDS
ACACTAACCAAAGTATTCAC+TGG 0.538217 2.2:-64655073 None:intergenic
CACCTCTGCATATTCTTGCT+AGG 0.541079 2.2:+64655339 MS.gene96186:CDS
TGAACAGCTGCCAAGAAAAG+AGG 0.541803 2.2:-64654943 None:intergenic
AGCTCTGCTGCAACATGAAG+AGG 0.542273 2.2:-64654841 None:intergenic
ATCTTGCTGCTACTTATAGG+AGG 0.551809 2.2:+64657428 MS.gene96186:CDS
CACGCACCACTTGTAAAAGA+AGG 0.553960 2.2:+64658073 MS.gene96186:CDS
AGTTATTGAGAAGAGGAGAA+TGG 0.554778 2.2:+64657180 MS.gene96186:CDS
TTAGGAAGACCTTCATTGCA+AGG 0.555765 2.2:-64656642 None:intergenic
CATGTTGAAGAATTTGGTGG+TGG 0.560650 2.2:+64657109 MS.gene96186:CDS
TCCACATCATGAATAGCCAC+AGG 0.562021 2.2:-64657271 None:intergenic
TTGGCTTATGTTATCTAACA+AGG 0.563339 2.2:-64654770 None:intergenic
GATCAAAGTACAGAGGGAGT+TGG 0.566389 2.2:-64658519 None:intergenic
AATTCTTCAACATGAGGACT+TGG 0.567474 2.2:-64657100 None:intergenic
TTGTTTAACCATGCCATGAG+AGG 0.567650 2.2:+64654622 MS.gene96186:CDS
GCTCTGCTGCAACATGAAGA+GGG 0.574081 2.2:-64654840 None:intergenic
GCAGCACCAGGCACACGCCA+AGG 0.574147 2.2:-64657457 None:intergenic
ATGTAGAGCAAGCGCAAGCA+AGG 0.575164 2.2:+64656560 MS.gene96186:intron
TGTTTAACCATGCCATGAGA+GGG 0.575955 2.2:+64654623 MS.gene96186:CDS
ATTTCCTATCGAAATTTCGA+AGG 0.577067 2.2:+64654913 MS.gene96186:CDS
GAGTTTGGCTATGTGTCGGA+AGG 0.578667 2.2:+64658543 MS.gene96186:CDS
ATGAACGTTATAATAAGGAT+GGG 0.580533 2.2:+64658020 MS.gene96186:CDS
ACCGCCTGGGATAGCTGTTG+AGG 0.581995 2.2:-64658170 None:intergenic
ATCATGGATTCCCAATTGGG+TGG 0.589546 2.2:-64656607 None:intergenic
TTCGCCTTCGAAATTTCGAT+AGG 0.591191 2.2:-64654917 None:intergenic
TTCAATTGTTGATGAGAACA+AGG 0.592418 2.2:+64655745 MS.gene96186:CDS
ATCTGAGTTTGGCTATGTGT+CGG 0.593043 2.2:+64658539 MS.gene96186:CDS
TTTCGATAGGAAATGAGGAT+GGG 0.593948 2.2:-64654904 None:intergenic
ATTCTTGATCAGGACCGCCT+GGG 0.594512 2.2:-64658183 None:intergenic
AACTCAGATCAAAGTACAGA+GGG 0.594945 2.2:-64658525 None:intergenic
TAACGTTCATAGAAATTAGG+TGG 0.595282 2.2:-64658007 None:intergenic
CCCTGTGGCTATTCATGATG+TGG 0.598098 2.2:+64657270 MS.gene96186:CDS
TTTAACAAACTGTATACATG+AGG 0.601178 2.2:-64657340 None:intergenic
GTGGGAATACAAGTGGTACA+AGG 0.606330 2.2:+64657492 MS.gene96186:CDS
TCATGGATTCCCAATTGGGT+GGG 0.611555 2.2:-64656606 None:intergenic
TGCTGCGATGCAAATGCAGT+GGG 0.612632 2.2:+64657474 MS.gene96186:CDS
ATAAACTGCAAATCTCATCT+GGG 0.613516 2.2:-64658449 None:intergenic
CCTCATGTTGAAGAATTTGG+TGG 0.614175 2.2:+64657106 MS.gene96186:CDS
TCATTGCAAGGATTAGAAGT+CGG 0.619332 2.2:-64656630 None:intergenic
ACAGCATAGAGTTTGAAAGC+AGG 0.620300 2.2:-64658232 None:intergenic
AGAGAAAATCCAAAGGAGGA+AGG 0.622162 2.2:+64657000 MS.gene96186:CDS
GCAGAGGTGATAATCCATCA+TGG 0.623629 2.2:-64655325 None:intergenic
CATTGACATAGGAGCAACAT+GGG 0.626539 2.2:+64656976 MS.gene96186:intron
ACAACCTCAACAGCTATCCC+AGG 0.633602 2.2:+64658166 MS.gene96186:CDS
GTGAATGCTGTAAACCATGA+TGG 0.647679 2.2:+64655311 MS.gene96186:CDS
CCACCAAATTCTTCAACATG+AGG 0.652444 2.2:-64657106 None:intergenic
GGGTAGAGAAAATCCAAAGG+AGG 0.656067 2.2:+64656996 MS.gene96186:CDS
CTCTGCTGCAACATGAAGAG+GGG 0.656516 2.2:-64654839 None:intergenic
AAATGCAGTGGGAATACAAG+TGG 0.670083 2.2:+64657485 MS.gene96186:CDS
ACCATGCCATGAGAGGGCAA+TGG 0.670926 2.2:+64654629 MS.gene96186:CDS
AACACTTTGTAGCTGCGCTG+AGG 0.674861 2.2:-64658568 None:intergenic
GTGCTGCGATGCAAATGCAG+TGG 0.675008 2.2:+64657473 MS.gene96186:CDS
AAACTCAGATCAAAGTACAG+AGG 0.675417 2.2:-64658526 None:intergenic
GCATTGACATAGGAGCAACA+TGG 0.681991 2.2:+64656975 MS.gene96186:intron
AACTGCAGAATCTTGCTCAG+TGG 0.683105 2.2:+64658114 MS.gene96186:CDS
GTACAGAGGGAGTTGGACCA+AGG 0.683296 2.2:-64658512 None:intergenic
TTCCTAGCAAGAATATGCAG+AGG 0.691547 2.2:-64655341 None:intergenic
CATGGGTAGAGAAAATCCAA+AGG 0.708498 2.2:+64656993 MS.gene96186:CDS
CCACATCATGAATAGCCACA+GGG 0.710076 2.2:-64657270 None:intergenic
GATTCTAGATATGTACCCTG+TGG 0.719569 2.2:+64657255 MS.gene96186:CDS
ACCTCAACAGCTATCCCAGG+CGG 0.731295 2.2:+64658169 MS.gene96186:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTGATTAAATTATGTAT+GGG + chr2.2:64657922-64657941 MS.gene96186:intron 10.0%
!!! TCTTTTATTTAATTTTTACT+CGG + chr2.2:64655891-64655910 MS.gene96186:intron 10.0%
!!! TTTATTTTTCATTTAGTATA+TGG + chr2.2:64656455-64656474 MS.gene96186:intron 10.0%
!! AAATTACAGATAAATATGAT+TGG + chr2.2:64656288-64656307 MS.gene96186:intron 15.0%
!! AATAATCATATAAACAATGT+AGG - chr2.2:64655485-64655504 None:intergenic 15.0%
!! ATTATAAAATAAAATCAGGT+TGG - chr2.2:64655517-64655536 None:intergenic 15.0%
!! CATACATAATTTAATCAATT+AGG - chr2.2:64657923-64657942 None:intergenic 15.0%
!! CTAATTGATTAAATTATGTA+TGG + chr2.2:64657921-64657940 MS.gene96186:intron 15.0%
!! TCACATTATAAAATAAAATC+AGG - chr2.2:64655521-64655540 None:intergenic 15.0%
!! TGAATTTACAATATTTGAAA+TGG - chr2.2:64656203-64656222 None:intergenic 15.0%
!! TGTAAAAAAATTTATATCGA+CGG + chr2.2:64655648-64655667 MS.gene96186:intron 15.0%
!! TTTCAAATATTGTAAATTCA+TGG + chr2.2:64656203-64656222 MS.gene96186:intron 15.0%
!!! AATTTTTTTGTTTAACTGAA+TGG + chr2.2:64656953-64656972 MS.gene96186:intron 15.0%
!!! GCAAATTATTTTATGAAATA+TGG + chr2.2:64655179-64655198 MS.gene96186:intron 15.0%
!!! TATATTTTTTCTTTTCAACA+AGG + chr2.2:64655455-64655474 MS.gene96186:intron 15.0%
!!! TGAAGAAATATTAAGTTTTA+GGG - chr2.2:64656814-64656833 None:intergenic 15.0%
!!! TGATTTTATTTTATAATGTG+AGG + chr2.2:64655520-64655539 MS.gene96186:intron 15.0%
!!! TTTTAGATATGCTTTTATTA+TGG - chr2.2:64655594-64655613 None:intergenic 15.0%
!! AATGAATTTATATGTAGGTT+TGG + chr2.2:64655256-64655275 MS.gene96186:intron 20.0%
!! AATTCAAAATTAATCTCTTC+CGG + chr2.2:64655680-64655699 MS.gene96186:intron 20.0%
!! AGTGTAATGAATTTATATGT+AGG + chr2.2:64655251-64655270 MS.gene96186:intron 20.0%
!! CAGTTAAACAAAAAAATTAC+AGG - chr2.2:64656951-64656970 None:intergenic 20.0%
!! TAAAAGATGAAATTCAATTG+CGG - chr2.2:64656403-64656422 None:intergenic 20.0%
!! TATAGAATATAGACCATATA+AGG - chr2.2:64656850-64656869 None:intergenic 20.0%
!! TATGGAAAGAAACAAAATAA+GGG - chr2.2:64658293-64658312 None:intergenic 20.0%
!! TTATAACGTTCATAGAAATT+AGG - chr2.2:64658013-64658032 None:intergenic 20.0%
!! TTTCTATGAACGTTATAATA+AGG + chr2.2:64658015-64658034 MS.gene96186:CDS 20.0%
!!! ATTTTTGTTGATCATGTTAT+TGG + chr2.2:64657568-64657587 MS.gene96186:intron 20.0%
!!! GAAGAAATATTAAGTTTTAG+GGG - chr2.2:64656813-64656832 None:intergenic 20.0%
!!! GTGAAGAAATATTAAGTTTT+AGG - chr2.2:64656815-64656834 None:intergenic 20.0%
!!! TATACAGTTTGTTAAATAAG+AGG + chr2.2:64657347-64657366 MS.gene96186:CDS 20.0%
! AAAATGAAGTTATTGAGAAG+AGG + chr2.2:64657173-64657192 MS.gene96186:CDS 25.0%
! AAGATTTCTAATCTATTAGG+AGG - chr2.2:64657532-64657551 None:intergenic 25.0%
! AATCCATCCATATAAGAATT+AGG + chr2.2:64656920-64656939 MS.gene96186:intron 25.0%
! ACAGATCAGTAAAAATACAA+AGG + chr2.2:64656422-64656441 MS.gene96186:intron 25.0%
! AGAAAAATAGTAGACAAGTT+AGG - chr2.2:64655960-64655979 None:intergenic 25.0%
! AGACCTCAAAAACATTAATA+TGG + chr2.2:64656351-64656370 MS.gene96186:intron 25.0%
! ATGAACGTTATAATAAGGAT+GGG + chr2.2:64658020-64658039 MS.gene96186:CDS 25.0%
! CAAAAACTGTTATATTTGCA+AGG - chr2.2:64656749-64656768 None:intergenic 25.0%
! GTATGGAAAGAAACAAAATA+AGG - chr2.2:64658294-64658313 None:intergenic 25.0%
! GTGAAGATTTCTAATCTATT+AGG - chr2.2:64657535-64657554 None:intergenic 25.0%
! TAGTTACTCATAAAGTAAAG+TGG + chr2.2:64657839-64657858 MS.gene96186:intron 25.0%
! TATGAACGTTATAATAAGGA+TGG + chr2.2:64658019-64658038 MS.gene96186:CDS 25.0%
! TCACTTTCAATCAAAAACAA+TGG + chr2.2:64655024-64655043 MS.gene96186:CDS 25.0%
! TGATACTGATAAGTGATAAA+AGG + chr2.2:64655703-64655722 MS.gene96186:intron 25.0%
! TGGTTAATTAAATTGCTGAT+TGG + chr2.2:64657801-64657820 MS.gene96186:intron 25.0%
! TGTGAAATCATACTTGTATA+AGG - chr2.2:64657077-64657096 None:intergenic 25.0%
! TTATACAAGTATGATTTCAC+AGG + chr2.2:64657076-64657095 MS.gene96186:CDS 25.0%
! TTGTAAAAGAAGGTAGTAAA+TGG + chr2.2:64658083-64658102 MS.gene96186:CDS 25.0%
! TTTAACAAACTGTATACATG+AGG - chr2.2:64657343-64657362 None:intergenic 25.0%
! TTTCCTAATTCTTATATGGA+TGG - chr2.2:64656926-64656945 None:intergenic 25.0%
!! ATATACTGGCTATAACTATA+AGG - chr2.2:64655931-64655950 None:intergenic 25.0%
!! ATGATTTTTAATCGTAGTTG+TGG + chr2.2:64656250-64656269 MS.gene96186:intron 25.0%
!! CTTGCAAATATAACAGTTTT+TGG + chr2.2:64656747-64656766 MS.gene96186:intron 25.0%
!! TCGTGTAATTTTTATGTGAT+CGG - chr2.2:64655109-64655128 None:intergenic 25.0%
!!! ACACCATATTAATGTTTTTG+AGG - chr2.2:64656357-64656376 None:intergenic 25.0%
!!! CTTTAGAATTAGTCCTTATA+TGG + chr2.2:64656834-64656853 MS.gene96186:intron 25.0%
!!! TTGTATTTTTCAGCTTGTTA+AGG + chr2.2:64657976-64657995 MS.gene96186:intron 25.0%
AAGTTAGGCTTGTAATATAC+TGG - chr2.2:64655945-64655964 None:intergenic 30.0%
ATAAACTGCAAATCTCATCT+GGG - chr2.2:64658452-64658471 None:intergenic 30.0%
ATCTTAATTGCAGCAAAGAT+GGG + chr2.2:64657211-64657230 MS.gene96186:CDS 30.0%
ATCTTTGCTGCAATTAAGAT+AGG - chr2.2:64657211-64657230 None:intergenic 30.0%
ATTTCCTATCGAAATTTCGA+AGG + chr2.2:64654913-64654932 MS.gene96186:CDS 30.0%
CCTATTCAACAAAGATATGA+AGG - chr2.2:64655843-64655862 None:intergenic 30.0%
CCTTCATATCTTTGTTGAAT+AGG + chr2.2:64655840-64655859 MS.gene96186:CDS 30.0%
CTAAGAATGCAAAACTCAAA+GGG + chr2.2:64654811-64654830 MS.gene96186:CDS 30.0%
GGAAAGAAAAGAAAAATCAC+TGG + chr2.2:64656581-64656600 MS.gene96186:CDS 30.0%
GGCATTTCCTAATTCTTATA+TGG - chr2.2:64656930-64656949 None:intergenic 30.0%
GGTCTATATTCTATAGACTA+AGG + chr2.2:64656855-64656874 MS.gene96186:intron 30.0%
TAACGTTCATAGAAATTAGG+TGG - chr2.2:64658010-64658029 None:intergenic 30.0%
TATCTTAATTGCAGCAAAGA+TGG + chr2.2:64657210-64657229 MS.gene96186:CDS 30.0%
TCAAACTTTATTATGCCTCA+AGG - chr2.2:64656780-64656799 None:intergenic 30.0%
TCTAATCATGATCGCAATTA+CGG - chr2.2:64656319-64656338 None:intergenic 30.0%
TTATCACTTATCAGTATCAC+CGG - chr2.2:64655702-64655721 None:intergenic 30.0%
TTCTGTTATATTACAGCAAC+AGG + chr2.2:64655976-64655995 MS.gene96186:intron 30.0%
TTGGCTTATGTTATCTAACA+AGG - chr2.2:64654773-64654792 None:intergenic 30.0%
! AAGGTCTTCCTAATCATTTT+CGG + chr2.2:64656652-64656671 MS.gene96186:CDS 30.0%
! AAGTGGATTTCATTGTAATC+TGG + chr2.2:64657781-64657800 MS.gene96186:intron 30.0%
! ACAAAACGAGACATTGATTA+AGG + chr2.2:64657637-64657656 MS.gene96186:intron 30.0%
! ATGTTTTGTCTTGCATAAAG+TGG + chr2.2:64657764-64657783 MS.gene96186:intron 30.0%
! GAACAAGAATGTTGTTCTTT+TGG + chr2.2:64657300-64657319 MS.gene96186:CDS 30.0%
! TACTAGTAGTTTTCATTTCG+TGG + chr2.2:64656227-64656246 MS.gene96186:intron 30.0%
! TTAATCAATGTCTCGTTTTG+TGG - chr2.2:64657638-64657657 None:intergenic 30.0%
! TTACTACCTTCTTTTACAAG+TGG - chr2.2:64658082-64658101 None:intergenic 30.0%
! TTCAATTGTTGATGAGAACA+AGG + chr2.2:64655745-64655764 MS.gene96186:CDS 30.0%
! TTCTTTTGGCCATAGAAAAT+AGG + chr2.2:64657314-64657333 MS.gene96186:CDS 30.0%
!! TTTCGTCAAGTTGATATCAA+TGG + chr2.2:64657391-64657410 MS.gene96186:CDS 30.0%
!! TTTTTGAGGGAAAAGTAAAG+TGG + chr2.2:64657885-64657904 MS.gene96186:intron 30.0%
AAACTCAGATCAAAGTACAG+AGG - chr2.2:64658529-64658548 None:intergenic 35.0%
AACTCAGATCAAAGTACAGA+GGG - chr2.2:64658528-64658547 None:intergenic 35.0%
AAGAAACAACCAAGTAACGT+GGG + chr2.2:64655567-64655586 MS.gene96186:intron 35.0%
AAGGACGACAAAGATATTGA+AGG - chr2.2:64656730-64656749 None:intergenic 35.0%
AATTCTTCAACATGAGGACT+TGG - chr2.2:64657103-64657122 None:intergenic 35.0%
AATTTGAGTCAAGTTCCACT+CGG + chr2.2:64657660-64657679 MS.gene96186:intron 35.0%
ACAATGAGAAGACTAATGCA+TGG - chr2.2:64656695-64656714 None:intergenic 35.0%
ACCATATCCAGTGAATACTT+TGG + chr2.2:64655066-64655085 MS.gene96186:CDS 35.0%
ACTTCTAATCCTTGCAATGA+AGG + chr2.2:64656633-64656652 MS.gene96186:CDS 35.0%
AGACATGTTGCAGCATATAT+GGG - chr2.2:64658475-64658494 None:intergenic 35.0%
AGGTTGTCACAAAAACTGTT+TGG - chr2.2:64654753-64654772 None:intergenic 35.0%
AGTCCTCATGTTGAAGAATT+TGG + chr2.2:64657103-64657122 MS.gene96186:CDS 35.0%
AGTTATTGAGAAGAGGAGAA+TGG + chr2.2:64657180-64657199 MS.gene96186:CDS 35.0%
ATGCATGTTCCATAGTTCAA+TGG - chr2.2:64655818-64655837 None:intergenic 35.0%
ATTTCGATAGGAAATGAGGA+TGG - chr2.2:64654908-64654927 None:intergenic 35.0%
CATCACTATCCATTGAACTA+TGG + chr2.2:64655806-64655825 MS.gene96186:CDS 35.0%
CCTAAGAATGCAAAACTCAA+AGG + chr2.2:64654810-64654829 MS.gene96186:CDS 35.0%
CGAAATTTCGATAGGAAATG+AGG - chr2.2:64654912-64654931 None:intergenic 35.0%
GATAAACTGCAAATCTCATC+TGG - chr2.2:64658453-64658472 None:intergenic 35.0%
GGTTTGGCACTTCAAATAAT+TGG + chr2.2:64655272-64655291 MS.gene96186:intron 35.0%
TACCAAGAAAGCTTCTTGTA+GGG + chr2.2:64658353-64658372 MS.gene96186:CDS 35.0%
TCATTGCAAGGATTAGAAGT+CGG - chr2.2:64656633-64656652 None:intergenic 35.0%
TCTATGTAAACGTACAGTAG+AGG - chr2.2:64656380-64656399 None:intergenic 35.0%
TCTGTACTTTGATCTGAGTT+TGG + chr2.2:64658528-64658547 MS.gene96186:CDS 35.0%
TGAGAAAAACCCTGAAGTAT+TGG + chr2.2:64654672-64654691 MS.gene96186:CDS 35.0%
TGTAAGTAGCATCACTTACA+AGG + chr2.2:64655422-64655441 MS.gene96186:intron 35.0%
TGTAATCAGATTCGCAAAGT+TGG - chr2.2:64657606-64657625 None:intergenic 35.0%
TTACCAAGAAAGCTTCTTGT+AGG + chr2.2:64658352-64658371 MS.gene96186:CDS 35.0%
TTCATAGAAATTAGGTGGCA+TGG - chr2.2:64658005-64658024 None:intergenic 35.0%
TTCTTTCCATACTCACATCT+CGG + chr2.2:64658302-64658321 MS.gene96186:CDS 35.0%
TTTACAGCATTCACAAGCTT+TGG - chr2.2:64655305-64655324 None:intergenic 35.0%
TTTCGATAGGAAATGAGGAT+GGG - chr2.2:64654907-64654926 None:intergenic 35.0%
! ACACTAACCAAAGTATTCAC+TGG - chr2.2:64655076-64655095 None:intergenic 35.0%
! ACCAAAGTATTCACTGGATA+TGG - chr2.2:64655070-64655089 None:intergenic 35.0%
! AGTCATCATCTTTGTTGTGT+TGG - chr2.2:64655005-64655024 None:intergenic 35.0%
! ATGAGGTTGCCTATTTTCTA+TGG - chr2.2:64657326-64657345 None:intergenic 35.0%
! GATGCTTTCTTTTGTCTTCA+TGG + chr2.2:64654976-64654995 MS.gene96186:CDS 35.0%
!! CCTTTGAGTTTTGCATTCTT+AGG - chr2.2:64654813-64654832 None:intergenic 35.0%
!! GCATTAGTCTTCTCATTGTT+AGG + chr2.2:64656696-64656715 MS.gene96186:intron 35.0%
!! TAACTGAATGGCATTGACAT+AGG + chr2.2:64656965-64656984 MS.gene96186:intron 35.0%
!! TTCCTAATCATTTTCGGTGT+CGG + chr2.2:64656658-64656677 MS.gene96186:CDS 35.0%
!!! ATATAGTATTTTGGTCCGAG+TGG - chr2.2:64657678-64657697 None:intergenic 35.0%
!!! GTTTTTGGTTTTAGTCCTTG+AGG + chr2.2:64656762-64656781 MS.gene96186:intron 35.0%
AAATGCAGTGGGAATACAAG+TGG + chr2.2:64657485-64657504 MS.gene96186:CDS 40.0%
AACCCTACAAGAAGCTTTCT+TGG - chr2.2:64658358-64658377 None:intergenic 40.0%
AAGGATTAGAAGTCGGATCA+TGG - chr2.2:64656626-64656645 None:intergenic 40.0%
ACAGCATAGAGTTTGAAAGC+AGG - chr2.2:64658235-64658254 None:intergenic 40.0%
ACATAAGCCAAGATATGTGC+AGG + chr2.2:64654782-64654801 MS.gene96186:CDS 40.0%
AGAGAAAATCCAAAGGAGGA+AGG + chr2.2:64657000-64657019 MS.gene96186:CDS 40.0%
ATCTGAGTTTGGCTATGTGT+CGG + chr2.2:64658539-64658558 MS.gene96186:CDS 40.0%
ATCTTTGCCTCCAATACTTC+AGG - chr2.2:64654685-64654704 None:intergenic 40.0%
CAAGAAACAACCAAGTAACG+TGG + chr2.2:64655566-64655585 MS.gene96186:intron 40.0%
CACATCTATAGCATCTGTTC+TGG + chr2.2:64658390-64658409 MS.gene96186:CDS 40.0%
CAGACATGTTGCAGCATATA+TGG - chr2.2:64658476-64658495 None:intergenic 40.0%
CATGGGTAGAGAAAATCCAA+AGG + chr2.2:64656993-64657012 MS.gene96186:CDS 40.0%
CATTGACATAGGAGCAACAT+GGG + chr2.2:64656976-64656995 MS.gene96186:intron 40.0%
CCACCAAATTCTTCAACATG+AGG - chr2.2:64657109-64657128 None:intergenic 40.0%
CCTCATGTTGAAGAATTTGG+TGG + chr2.2:64657106-64657125 MS.gene96186:CDS 40.0%
CTAGCAACATGGTTTACAAG+AGG - chr2.2:64656073-64656092 None:intergenic 40.0%
CTTATAGGAGGTTTAAGCCT+TGG + chr2.2:64657440-64657459 MS.gene96186:CDS 40.0%
GAGGAAGGAAAAACACATTC+GGG + chr2.2:64657015-64657034 MS.gene96186:CDS 40.0%
GATTCTAGATATGTACCCTG+TGG + chr2.2:64657255-64657274 MS.gene96186:CDS 40.0%
GGAGGAAGGAAAAACACATT+CGG + chr2.2:64657014-64657033 MS.gene96186:CDS 40.0%
GTGAATGCTGTAAACCATGA+TGG + chr2.2:64655311-64655330 MS.gene96186:CDS 40.0%
GTGCAGCTTCCAAAACAATT+AGG - chr2.2:64655368-64655387 None:intergenic 40.0%
TACCAAAATTTCGCGAGCAA+TGG - chr2.2:64656041-64656060 None:intergenic 40.0%
TACCGACACCGAAAATGATT+AGG - chr2.2:64656663-64656682 None:intergenic 40.0%
TAGTCTGAGTTTGTGCTTGA+AGG - chr2.2:64655784-64655803 None:intergenic 40.0%
TATTATGGACCCACGTTACT+TGG - chr2.2:64655579-64655598 None:intergenic 40.0%
TCTTTGCCTCCAATACTTCA+GGG - chr2.2:64654684-64654703 None:intergenic 40.0%
TGTTTAACCATGCCATGAGA+GGG + chr2.2:64654623-64654642 MS.gene96186:CDS 40.0%
TTAGGAAGACCTTCATTGCA+AGG - chr2.2:64656645-64656664 None:intergenic 40.0%
TTCAAACCGAGATGTGAGTA+TGG - chr2.2:64658311-64658330 None:intergenic 40.0%
TTCCTAGCAAGAATATGCAG+AGG - chr2.2:64655344-64655363 None:intergenic 40.0%
TTCGCCTTCGAAATTTCGAT+AGG - chr2.2:64654920-64654939 None:intergenic 40.0%
TTGTTTAACCATGCCATGAG+AGG + chr2.2:64654622-64654641 MS.gene96186:CDS 40.0%
! AACCATTGCTCGCGAAATTT+TGG + chr2.2:64656036-64656055 MS.gene96186:CDS 40.0%
! AAGGTGTTTGTGTCAATGTC+AGG + chr2.2:64655722-64655741 MS.gene96186:intron 40.0%
! ATCTTGCTGCTACTTATAGG+AGG + chr2.2:64657428-64657447 MS.gene96186:CDS 40.0%
! CATGTTGAAGAATTTGGTGG+TGG + chr2.2:64657109-64657128 MS.gene96186:CDS 40.0%
! GCTAGGAAGCCTAATTGTTT+TGG + chr2.2:64655356-64655375 MS.gene96186:CDS 40.0%
! TCAATGTCTCGTTTTGTGGA+TGG - chr2.2:64657634-64657653 None:intergenic 40.0%
! TGAGCAAGATTCTGCAGTTT+TGG - chr2.2:64658113-64658132 None:intergenic 40.0%
! TGCATCTTGCTGCTACTTAT+AGG + chr2.2:64657425-64657444 MS.gene96186:CDS 40.0%
! TGTGTTTTTCCTTCCTCCTT+TGG - chr2.2:64657012-64657031 None:intergenic 40.0%
! TTTTAGCAGTAGTGGTATGC+CGG - chr2.2:64658209-64658228 None:intergenic 40.0%
!! GAAAAACCCTGAAGTATTGG+AGG + chr2.2:64654675-64654694 MS.gene96186:CDS 40.0%
!!! ATTGTTTTGGAAGCTGCACA+AGG + chr2.2:64655369-64655388 MS.gene96186:CDS 40.0%
AACTGCAGAATCTTGCTCAG+TGG + chr2.2:64658114-64658133 MS.gene96186:CDS 45.0%
AATGAGGATGGGATCTCTTC+TGG - chr2.2:64654896-64654915 None:intergenic 45.0%
ACCAAGGCAAAAAAGGACAC+AGG - chr2.2:64658499-64658518 None:intergenic 45.0%
ATCATGGATTCCCAATTGGG+TGG - chr2.2:64656610-64656629 None:intergenic 45.0%
CAAAATAAGGGCTGTGACAG+AGG - chr2.2:64658281-64658300 None:intergenic 45.0%
CACCTCTGCATATTCTTGCT+AGG + chr2.2:64655339-64655358 MS.gene96186:CDS 45.0%
CACGCACCACTTGTAAAAGA+AGG + chr2.2:64658073-64658092 MS.gene96186:CDS 45.0%
CCACATCATGAATAGCCACA+GGG - chr2.2:64657273-64657292 None:intergenic 45.0%
CGGATCATGGATTCCCAATT+GGG - chr2.2:64656613-64656632 None:intergenic 45.0%
GAGTTGGACCAAGGCAAAAA+AGG - chr2.2:64658506-64658525 None:intergenic 45.0%
GATCAAAGTACAGAGGGAGT+TGG - chr2.2:64658522-64658541 None:intergenic 45.0%
GCAGAGGTGATAATCCATCA+TGG - chr2.2:64655328-64655347 None:intergenic 45.0%
GGATGTTCCTGCACATATCT+TGG - chr2.2:64654792-64654811 None:intergenic 45.0%
GGGTAGAGAAAATCCAAAGG+AGG + chr2.2:64656996-64657015 MS.gene96186:CDS 45.0%
GTGGGAATACAAGTGGTACA+AGG + chr2.2:64657492-64657511 MS.gene96186:CDS 45.0%
TCATGGATTCCCAATTGGGT+GGG - chr2.2:64656609-64656628 None:intergenic 45.0%
TCCACATCATGAATAGCCAC+AGG - chr2.2:64657274-64657293 None:intergenic 45.0%
TCGGATCATGGATTCCCAAT+TGG - chr2.2:64656614-64656633 None:intergenic 45.0%
TGAACAGCTGCCAAGAAAAG+AGG - chr2.2:64654946-64654965 None:intergenic 45.0%
TTCATGTTGCAGCAGAGCTT+GGG + chr2.2:64654845-64654864 MS.gene96186:CDS 45.0%
! AGAAGGTAGGACTAGCAACA+TGG - chr2.2:64656084-64656103 None:intergenic 45.0%
! AGGCGAAACTCCTCTTTTCT+TGG + chr2.2:64654933-64654952 MS.gene96186:CDS 45.0%
! CTTTTCTTGGCAGCTGTTCA+TGG + chr2.2:64654946-64654965 MS.gene96186:CDS 45.0%
! GCATTGACATAGGAGCAACA+TGG + chr2.2:64656975-64656994 MS.gene96186:intron 45.0%
!! GTTGAAGAATTTGGTGGTGG+TGG + chr2.2:64657112-64657131 MS.gene96186:CDS 45.0%
!! TTTTGGAAGCTGCACAAGGA+TGG + chr2.2:64655373-64655392 MS.gene96186:CDS 45.0%
!!! GCAGGCTTTTTTAGCAGTAG+TGG - chr2.2:64658217-64658236 None:intergenic 45.0%
!!! TATATATATATATAGTATTT+TGG - chr2.2:64657687-64657706 None:intergenic 5.0%
!!! TTTATTTTTTTTTTTTTTGA+GGG + chr2.2:64657872-64657891 MS.gene96186:intron 5.0%
!!! TTTTATTTTTTTTTTTTTTG+AGG + chr2.2:64657871-64657890 MS.gene96186:intron 5.0%
AACACTTTGTAGCTGCGCTG+AGG - chr2.2:64658571-64658590 None:intergenic 50.0%
ACAACCTCAACAGCTATCCC+AGG + chr2.2:64658166-64658185 MS.gene96186:CDS 50.0%
AGCTCTGCTGCAACATGAAG+AGG - chr2.2:64654844-64654863 None:intergenic 50.0%
AGTCCTACCTTCTAACCCAC+CGG + chr2.2:64656091-64656110 MS.gene96186:intron 50.0%
ATGTAGAGCAAGCGCAAGCA+AGG + chr2.2:64656560-64656579 MS.gene96186:intron 50.0%
ATTCTTGATCAGGACCGCCT+GGG - chr2.2:64658186-64658205 None:intergenic 50.0%
CAAGTGGTGCGTGTGTATCA+AGG - chr2.2:64658066-64658085 None:intergenic 50.0%
CCCTGTGGCTATTCATGATG+TGG + chr2.2:64657270-64657289 MS.gene96186:CDS 50.0%
CTCTGCTGCAACATGAAGAG+GGG - chr2.2:64654842-64654861 None:intergenic 50.0%
CTTCATGTTGCAGCAGAGCT+TGG + chr2.2:64654844-64654863 MS.gene96186:CDS 50.0%
GAGTTTGGCTATGTGTCGGA+AGG + chr2.2:64658543-64658562 MS.gene96186:CDS 50.0%
GCTCTGCTGCAACATGAAGA+GGG - chr2.2:64654843-64654862 None:intergenic 50.0%
GGTATGCCGGATTCTTGATC+AGG - chr2.2:64658196-64658215 None:intergenic 50.0%
GTTCTGGTCTCATTCTGTGC+AGG + chr2.2:64658406-64658425 MS.gene96186:CDS 50.0%
TGCTGCGATGCAAATGCAGT+GGG + chr2.2:64657474-64657493 MS.gene96186:CDS 50.0%
TTCTCTCCATTGCCCTCTCA+TGG - chr2.2:64654638-64654657 None:intergenic 50.0%
!! ATCACTGGTTCCCACCCAAT+TGG + chr2.2:64656596-64656615 MS.gene96186:CDS 50.0%
!! GAAGAATTTGGTGGTGGTGG+TGG + chr2.2:64657115-64657134 MS.gene96186:CDS 50.0%
!! TCACTGGTTCCCACCCAATT+GGG + chr2.2:64656597-64656616 MS.gene96186:CDS 50.0%
!!! GCCTGTGTCCTTTTTTGCCT+TGG + chr2.2:64658495-64658514 MS.gene96186:CDS 50.0%
ACCATGCCATGAGAGGGCAA+TGG + chr2.2:64654629-64654648 MS.gene96186:CDS 55.0%
ACCTCAACAGCTATCCCAGG+CGG + chr2.2:64658169-64658188 MS.gene96186:CDS 55.0%
CCAACTACTTGCGCTAGACC+CGG - chr2.2:64656113-64656132 None:intergenic 55.0%
GATTCTTGATCAGGACCGCC+TGG - chr2.2:64658187-64658206 None:intergenic 55.0%
GGCGGTCCTGATCAAGAATC+CGG + chr2.2:64658187-64658206 MS.gene96186:CDS 55.0%
GTACAGAGGGAGTTGGACCA+AGG - chr2.2:64658515-64658534 None:intergenic 55.0%
GTCCTACCTTCTAACCCACC+GGG + chr2.2:64656092-64656111 MS.gene96186:intron 55.0%
GTGCTGCGATGCAAATGCAG+TGG + chr2.2:64657473-64657492 MS.gene96186:CDS 55.0%
TCCATTGCCCTCTCATGGCA+TGG - chr2.2:64654633-64654652 None:intergenic 55.0%
TGCATTTGCATCGCAGCACC+AGG - chr2.2:64657472-64657491 None:intergenic 55.0%
TTTAAGCCTTGGCGTGTGCC+TGG + chr2.2:64657451-64657470 MS.gene96186:CDS 55.0%
!! GAATTTGGTGGTGGTGGTGG+TGG + chr2.2:64657118-64657137 MS.gene96186:CDS 55.0%
ACCGCCTGGGATAGCTGTTG+AGG - chr2.2:64658173-64658192 None:intergenic 60.0%
ACTACTTGCGCTAGACCCGG+TGG - chr2.2:64656110-64656129 None:intergenic 60.0%
CCGGGTCTAGCGCAAGTAGT+TGG + chr2.2:64656110-64656129 MS.gene96186:intron 60.0%
CTACTTGCGCTAGACCCGGT+GGG - chr2.2:64656109-64656128 None:intergenic 60.0%
!! GACCCGGTGGGTTAGAAGGT+AGG - chr2.2:64656097-64656116 None:intergenic 60.0%
!! GCTAGACCCGGTGGGTTAGA+AGG - chr2.2:64656101-64656120 None:intergenic 60.0%
!! TTTGGTGGTGGTGGTGGTGG+TGG + chr2.2:64657121-64657140 MS.gene96186:CDS 60.0%
!! GGTGGTGGTGGTGGTGGCAT+AGG + chr2.2:64657130-64657149 MS.gene96186:CDS 65.0%
GCAGCACCAGGCACACGCCA+AGG - chr2.2:64657460-64657479 None:intergenic 70.0%
!! GGTGGTGGTGGTGGTGGTGG+TGG + chr2.2:64657124-64657143 MS.gene96186:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 64654598 64658600 64654598 ID=MS.gene96186
chr2.2 mRNA 64654598 64658600 64654598 ID=MS.gene96186.t1;Parent=MS.gene96186
chr2.2 exon 64654598 64655087 64654598 ID=MS.gene96186.t1.exon1;Parent=MS.gene96186.t1
chr2.2 CDS 64654598 64655087 64654598 ID=cds.MS.gene96186.t1;Parent=MS.gene96186.t1
chr2.2 exon 64655273 64655422 64655273 ID=MS.gene96186.t1.exon2;Parent=MS.gene96186.t1
chr2.2 CDS 64655273 64655422 64655273 ID=cds.MS.gene96186.t1;Parent=MS.gene96186.t1
chr2.2 exon 64655744 64655878 64655744 ID=MS.gene96186.t1.exon3;Parent=MS.gene96186.t1
chr2.2 CDS 64655744 64655878 64655744 ID=cds.MS.gene96186.t1;Parent=MS.gene96186.t1
chr2.2 exon 64655992 64656057 64655992 ID=MS.gene96186.t1.exon4;Parent=MS.gene96186.t1
chr2.2 CDS 64655992 64656057 64655992 ID=cds.MS.gene96186.t1;Parent=MS.gene96186.t1
chr2.2 exon 64656566 64656679 64656566 ID=MS.gene96186.t1.exon5;Parent=MS.gene96186.t1
chr2.2 CDS 64656566 64656679 64656566 ID=cds.MS.gene96186.t1;Parent=MS.gene96186.t1
chr2.2 exon 64656987 64657513 64656987 ID=MS.gene96186.t1.exon6;Parent=MS.gene96186.t1
chr2.2 CDS 64656987 64657513 64656987 ID=cds.MS.gene96186.t1;Parent=MS.gene96186.t1
chr2.2 exon 64657989 64658600 64657989 ID=MS.gene96186.t1.exon7;Parent=MS.gene96186.t1
chr2.2 CDS 64657989 64658600 64657989 ID=cds.MS.gene96186.t1;Parent=MS.gene96186.t1
Gene Sequence

>MS.gene96186

ATGGCTGAGATTGAGTTTGAAAGTTTGTTTAACCATGCCATGAGAGGGCAATGGAGAGAAGTTTTAGAGTCGTATGAGAAAAACCCTGAAGTATTGGAGGCAAAGATCACAAAAGCAGAAGACACAGTGCTACACATTGCTATATACGTGAGCCAAACAGTTTTTGTGACAACCTTGTTAGATAACATAAGCCAAGATATGTGCAGGAACATCCTAAGAATGCAAAACTCAAAGGGAAATACCCCTCTTCATGTTGCAGCAGAGCTTGGGAATGTAGACATTTGTAACAACATAGCCAGAAGAGATCCCATCCTCATTTCCTATCGAAATTTCGAAGGCGAAACTCCTCTTTTCTTGGCAGCTGTTCATGGAAAAAGAGATGCTTTCTTTTGTCTTCATGGTCGCCAACACAACAAAGATGATGACTCACTTTCAATCAAAAACAATGGAGACACTATTCTTCATTCTACCATATCCAGTGAATACTTTGGTTAGTGTCATTGCTTTGCCGATCACATAAAAATTACACGAGTTTTACACTTATATCGAATCATAGTTTATAAACTCTTATTATATATCAAGCAAATTATTTTATGAAATATGGTCAAGTTCATTTATATATATTAATGTCTTTCAATTTAATTGAGTGTACTAGTGTAATGAATTTATATGTAGGTTTGGCACTTCAAATAATTGGAATGTATCCAAAGCTTGTGAATGCTGTAAACCATGATGGATTATCACCTCTGCATATTCTTGCTAGGAAGCCTAATTGTTTTGGAAGCTGCACAAGGATGGATCTAATTGATCGTATCATCTACACTTGTAAGTAGCATCACTTACAAGGTTTTCTTTAATATATTTTTTCTTTTCAACAAGGTTTTCCTACATTGTTTATATGATTATTATATTTGATCCAACCTGATTTTATTTTATAATGTGAGGAATATATGCTGCAAGCATGAATACAAGAAACAACCAAGTAACGTGGGTCCATAATAAAAGCATATCTAAAAGTCATATAAAAAATGATTTGTGATTGATCGACAATGTAAAAAAATTTATATCGACGGTGCAGAAGAAATTCAAAATTAATCTCTTCCGGTGATACTGATAAGTGATAAAAGGTGTTTGTGTCAATGTCAGGTTCAATTGTTGATGAGAACAAGGAAGAAAGATATGACCTTCAAGCACAAACTCAGACTACTCATCACTATCCATTGAACTATGGAACATGCATGACCTTCATATCTTTGTTGAATAGGTTTTTTAAAGTAACAAGTATGTCAATCTTCTTTTATTTAATTTTTACTCGGTTGATTTTTTTTTTCCTTATAGTTATAGCCAGTATATTACAAGCCTAACTTGTCTACTATTTTTCTGTTATATTACAGCAACAGGAAAAGATACAAATGCTGCTGCAACTAGTGACGAAGAGAACCATTGCTCGCGAAATTTTGGTATTATAATTTCCTCTTGTAAACCATGTTGCTAGTCCTACCTTCTAACCCACCGGGTCTAGCGCAAGTAGTTGGTGTAGAGTGTGTTTGAGTATTGTAAACTCTAGTGAACATAAATCAGAATGTTTCAACATGTATAAAGCCATTTCAAATATTGTAAATTCATGGTTACTAGTAGTTTTCATTTCGTGGATGATTTTTAATCGTAGTTGTGGTTGCAAATATAAGAAAAATTACAGATAAATATGATTGGTGTGACCGTAATTGCGATCATGATTAGAATGTGATTGCAGAGACCTCAAAAACATTAATATGGTGTCCTCTACTGTACGTTTACATAGACCGCAATTGAATTTCATCTTTTACAGATCAGTAAAAATACAAAGGTTTCTAGTTCTTTATTTTTCATTTAGTATATGGTATGCATGTTAATATTAACTGCAAGTGAACGTAGATTTTTTAGTGAGCTAGTAAATTTGAGATAACATCTATGTTTTTGTGCATGTAGAGCAAGCGCAAGCAAGGAAAGAAAAGAAAAATCACTGGTTCCCACCCAATTGGGAATCCATGATCCGACTTCTAATCCTTGCAATGAAGGTCTTCCTAATCATTTTCGGTGTCGGTAAGTACATAACCATGCATTAGTCTTCTCATTGTTAGGATACAAAGCCTTCAATATCTTTGTCGTCCTTGCAAATATAACAGTTTTTGGTTTTAGTCCTTGAGGCATAATAAAGTTTGATTTTTTTGATCCCCTAAAACTTAATATTTCTTCACTTTAGAATTAGTCCTTATATGGTCTATATTCTATAGACTAAGGTTAATAAAAACTAGTATATATGTAGAGAAGAAAAAAATATTTAATCCATCCATATAAGAATTAGGAAATGCCTGTAATTTTTTTGTTTAACTGAATGGCATTGACATAGGAGCAACATGGGTAGAGAAAATCCAAAGGAGGAAGGAAAAACACATTCGGGCTACACAAGTAATGAATGAACTGATACAACGCGCTTCCTTATACAAGTATGATTTCACAGGACCAAGTCCTCATGTTGAAGAATTTGGTGGTGGTGGTGGTGGTGGTGGCATAGGCAAAATCAAGAGCAATACAGAAAATGAAGTTATTGAGAAGAGGAGAATGGTGTCACCTATCTTAATTGCAGCAAAGATGGGAGTGACTGAAATGATTGAAAAGATTCTAGATATGTACCCTGTGGCTATTCATGATGTGGACAGTCAGAACAAGAATGTTGTTCTTTTGGCCATAGAAAATAGGCAACCTCATGTATACAGTTTGTTAAATAAGAGGAGTGTAATCAAAGAGACTGCATTTCGTCAAGTTGATATCAATGGTAACAGTGCATTGCATCTTGCTGCTACTTATAGGAGGTTTAAGCCTTGGCGTGTGCCTGGTGCTGCGATGCAAATGCAGTGGGAATACAAGTGGTACAAGGTATTGAATATTTATCCTCCTAATAGATTAGAAATCTTCACAAACTAGCTTATCATTTTTGTTGATCATGTTATTGGTGCGAAGTATCACCAACTTTGCGAATCTGATTACATTTTTCCATCCACAAAACGAGACATTGATTAAGGAATTTGAGTCAAGTTCCACTCGGACCAAAATACTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTTTTGTCTTGCATAAAGTGGATTTCATTGTAATCTGGTTAATTAAATTGCTGATTGGTAAAGTAAAATATTCTAGTTACTCATAAAGTAAAGTGGATTTTATTTTTTTATTTTTTTTTTTTTTGAGGGAAAAGTAAAGTGGATTTTATTGTAACCTAATTGATTAAATTATGTATGGGTAAAGTATAATATTCTAGTCACTCATGATGTTTGTATTTTTCAGCTTGTTAAGGACTCCATGCCACCTAATTTCTATGAACGTTATAATAAGGATGGGAAAACAGCAAAGCAAGTCTTCCTTGATACACACGCACCACTTGTAAAAGAAGGTAGTAAATGGCTCACCAAAACTGCAGAATCTTGCTCAGTGGTAGCAGCACTTGTTGCAACTGTTGCATTCACAACCTCAACAGCTATCCCAGGCGGTCCTGATCAAGAATCCGGCATACCACTACTGCTAAAAAAGCCTGCTTTCAAACTCTATGCTGTAGCATCACTTGTTGCACTTTGCTCCTCTGTCACAGCCCTTATTTTGTTTCTTTCCATACTCACATCTCGGTTTGAAGAAAAAGATTTTGTTATCGACTTACCAAGAAAGCTTCTTGTAGGGTTGACTACACTCTTCACATCTATAGCATCTGTTCTGGTCTCATTCTGTGCAGGACATTTCTTTATTGTTGAAGCCCAGATGAGATTTGCAGTTTATCCCATATATGCTGCAACATGTCTGCCTGTGTCCTTTTTTGCCTTGGTCCAACTCCCTCTGTACTTTGATCTGAGTTTGGCTATGTGTCGGAAGGTTCCTCAGCGCAGCTACAAAGTGTTCTTTCACTAG
Protein sequence

>MS.gene96186.t1

MAEIEFESLFNHAMRGQWREVLESYEKNPEVLEAKITKAEDTVLHIAIYVSQTVFVTTLLDNISQDMCRNILRMQNSKGNTPLHVAAELGNVDICNNIARRDPILISYRNFEGETPLFLAAVHGKRDAFFCLHGRQHNKDDDSLSIKNNGDTILHSTISSEYFGLALQIIGMYPKLVNAVNHDGLSPLHILARKPNCFGSCTRMDLIDRIIYTCSIVDENKEERYDLQAQTQTTHHYPLNYGTCMTFISLLNRFFKVTTTGKDTNAAATSDEENHCSRNFEQAQARKEKKNHWFPPNWESMIRLLILAMKVFLIIFGVGATWVEKIQRRKEKHIRATQVMNELIQRASLYKYDFTGPSPHVEEFGGGGGGGGIGKIKSNTENEVIEKRRMVSPILIAAKMGVTEMIEKILDMYPVAIHDVDSQNKNVVLLAIENRQPHVYSLLNKRSVIKETAFRQVDINGNSALHLAATYRRFKPWRVPGAAMQMQWEYKWYKLVKDSMPPNFYERYNKDGKTAKQVFLDTHAPLVKEGSKWLTKTAESCSVVAALVATVAFTTSTAIPGGPDQESGIPLLLKKPAFKLYAVASLVALCSSVTALILFLSILTSRFEEKDFVIDLPRKLLVGLTTLFTSIASVLVSFCAGHFFIVEAQMRFAVYPIYAATCLPVSFFALVQLPLYFDLSLAMCRKVPQRSYKVFFH