Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96315.t1 | XP_003610042.1 | 96.7 | 449 | 13 | 1 | 47 | 495 | 374 | 820 | 1.60E-241 | 845.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96315.t1 | Q9SZR3 | 35.3 | 468 | 265 | 14 | 48 | 492 | 563 | 1015 | 6.4e-61 | 236.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96315.t1 | G7JU94 | 96.7 | 449 | 13 | 1 | 47 | 495 | 374 | 820 | 1.2e-241 | 845.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene96315 | 0.835522 | 1.60E-56 | -1.69E-46 |
| MS.gene051018 | MS.gene96315 | 0.813662 | 2.29E-51 | -1.69E-46 |
| MS.gene051648 | MS.gene96315 | 0.823922 | 1.07E-53 | -1.69E-46 |
| MS.gene051664 | MS.gene96315 | 0.850078 | 2.14E-60 | -1.69E-46 |
| MS.gene051720 | MS.gene96315 | 0.824951 | 6.11E-54 | -1.69E-46 |
| MS.gene052150 | MS.gene96315 | 0.812289 | 4.57E-51 | -1.69E-46 |
| MS.gene052151 | MS.gene96315 | 0.83011 | 3.53E-55 | -1.69E-46 |
| MS.gene053536 | MS.gene96315 | 0.829638 | 4.60E-55 | -1.69E-46 |
| MS.gene053538 | MS.gene96315 | 0.830407 | 2.99E-55 | -1.69E-46 |
| MS.gene054584 | MS.gene96315 | 0.806181 | 9.32E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene96315 | 0.811052 | 8.49E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene96315 | 0.803281 | 3.76E-49 | -1.69E-46 |
| MS.gene055537 | MS.gene96315 | 0.869428 | 3.12E-66 | -1.69E-46 |
| MS.gene056169 | MS.gene96315 | 0.827679 | 1.37E-54 | -1.69E-46 |
| MS.gene056228 | MS.gene96315 | 0.821334 | 4.27E-53 | -1.69E-46 |
| MS.gene057082 | MS.gene96315 | 0.8412 | 5.49E-58 | -1.69E-46 |
| MS.gene057132 | MS.gene96315 | 0.807061 | 6.07E-50 | -1.69E-46 |
| MS.gene058668 | MS.gene96315 | 0.811176 | 7.98E-51 | -1.69E-46 |
| MS.gene05894 | MS.gene96315 | 0.857678 | 1.39E-62 | -1.69E-46 |
| MS.gene059424 | MS.gene96315 | 0.822956 | 1.79E-53 | -1.69E-46 |
| MS.gene060519 | MS.gene96315 | 0.804501 | 2.10E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96315.t1 | MTR_4g127290 | 96.344 | 465 | 15 | 1 | 31 | 495 | 358 | 820 | 0.0 | 908 |
| MS.gene96315.t1 | MTR_2g038200 | 49.802 | 504 | 189 | 14 | 34 | 495 | 528 | 1009 | 4.33e-127 | 394 |
| MS.gene96315.t1 | MTR_3g464150 | 27.832 | 309 | 159 | 13 | 122 | 382 | 682 | 974 | 6.84e-13 | 71.6 |
| MS.gene96315.t1 | MTR_5g071060 | 26.117 | 291 | 139 | 9 | 122 | 354 | 683 | 955 | 7.04e-13 | 71.6 |
| MS.gene96315.t1 | MTR_5g071060 | 26.117 | 291 | 139 | 9 | 122 | 354 | 650 | 922 | 7.22e-13 | 71.6 |
| MS.gene96315.t1 | MTR_4g129230 | 22.131 | 366 | 210 | 11 | 120 | 454 | 663 | 984 | 7.03e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96315.t1 | AT4G29920 | 36.752 | 468 | 258 | 15 | 48 | 492 | 566 | 1018 | 1.23e-70 | 243 |
| MS.gene96315.t1 | AT4G29920 | 36.752 | 468 | 258 | 15 | 48 | 492 | 563 | 1015 | 1.35e-70 | 243 |
| MS.gene96315.t1 | AT5G57130 | 33.333 | 459 | 248 | 21 | 50 | 493 | 612 | 1027 | 4.58e-47 | 176 |
| MS.gene96315.t1 | AT2G40130 | 23.925 | 372 | 217 | 15 | 120 | 459 | 537 | 874 | 4.07e-11 | 66.2 |
| MS.gene96315.t1 | AT2G40130 | 23.925 | 372 | 217 | 15 | 120 | 459 | 540 | 877 | 4.45e-11 | 65.9 |
Find 75 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATTGGGATAGTGGGTTTA+TGG | 0.097831 | 8.3:+3754824 | MS.gene96315:CDS |
| CTCTTCAATTCTAGGGTTCT+TGG | 0.166740 | 8.3:-3754316 | None:intergenic |
| CCTAATAGCATTTCAGAAAA+TGG | 0.180008 | 8.3:-3754003 | None:intergenic |
| GTTTGGGTGATAATAGAAAT+TGG | 0.193442 | 8.3:+3754802 | MS.gene96315:CDS |
| AGTTTAATTTCAATGATAAA+AGG | 0.216333 | 8.3:+3753605 | MS.gene96315:CDS |
| AATTCTAGGGTTCTTGGTTT+TGG | 0.217523 | 8.3:-3754310 | None:intergenic |
| CTGAGAGAAATTTCATGAAT+TGG | 0.260874 | 8.3:-3754086 | None:intergenic |
| CTCTTGGGGCTCAAGAAATT+AGG | 0.268217 | 8.3:-3754264 | None:intergenic |
| AGTAACAAAGAGGGGAATTT+AGG | 0.272164 | 8.3:+3754141 | MS.gene96315:CDS |
| AGAAATTGGGATTGGGATAG+TGG | 0.281827 | 8.3:+3754816 | MS.gene96315:CDS |
| CTCTCAGATGGATATGAAAA+AGG | 0.296673 | 8.3:+3754102 | MS.gene96315:CDS |
| AGAAACACATTTGAATTCAA+TGG | 0.324155 | 8.3:-3754501 | None:intergenic |
| GATTCCATTGCAAGCATAGA+AGG | 0.340258 | 8.3:+3753649 | MS.gene96315:CDS |
| GGGTTGTTGATTTCTGAAAA+AGG | 0.340530 | 8.3:+3754348 | MS.gene96315:CDS |
| AGCTGATTTGGTCCTTCAAT+TGG | 0.342833 | 8.3:+3753951 | MS.gene96315:CDS |
| CTAATAGCATTTCAGAAAAT+GGG | 0.352190 | 8.3:-3754002 | None:intergenic |
| CTAACAAAATGTTTGAGAAA+TGG | 0.353619 | 8.3:+3754706 | MS.gene96315:CDS |
| TTTGGGTGATAATAGAAATT+GGG | 0.375578 | 8.3:+3754803 | MS.gene96315:CDS |
| ATCATTGAAATTAAACTCAA+TGG | 0.376365 | 8.3:-3753599 | None:intergenic |
| TGAGAGAAATTTCATGAATT+GGG | 0.385237 | 8.3:-3754085 | None:intergenic |
| GTTCTTCTCTTCAATGCTTG+TGG | 0.404826 | 8.3:-3754196 | None:intergenic |
| TTTCATTCTCTTCAATTCTA+GGG | 0.410585 | 8.3:-3754323 | None:intergenic |
| CAGTTTAGAAACAGTTAACT+TGG | 0.417821 | 8.3:+3754749 | MS.gene96315:CDS |
| GTGATAATAGAAATTGGGAT+TGG | 0.418688 | 8.3:+3754808 | MS.gene96315:CDS |
| CAGCTTTCATGTTCAGATCA+AGG | 0.421676 | 8.3:-3754419 | None:intergenic |
| TAATTAACTTGGATACTCTT+AGG | 0.423030 | 8.3:-3754858 | None:intergenic |
| GTTTAATTTCAATGATAAAA+GGG | 0.427762 | 8.3:+3753606 | MS.gene96315:CDS |
| AGAATTGAAGAGAATGAAAA+GGG | 0.443195 | 8.3:+3754327 | MS.gene96315:CDS |
| TAGAATTGAAGAGAATGAAA+AGG | 0.451533 | 8.3:+3754326 | MS.gene96315:CDS |
| TTCATGAAATTTCTCTCAGA+TGG | 0.451801 | 8.3:+3754090 | MS.gene96315:CDS |
| GGGTCATTTGAAGATGTTTG+TGG | 0.467210 | 8.3:+3754609 | MS.gene96315:CDS |
| TGATAATAGAAATTGGGATT+GGG | 0.478557 | 8.3:+3754809 | MS.gene96315:CDS |
| AAAATGAAATTTCATTTACA+TGG | 0.483113 | 8.3:+3753854 | MS.gene96315:CDS |
| TGAAACTTTAAGTAACAAAG+AGG | 0.484462 | 8.3:+3754131 | MS.gene96315:CDS |
| TTTACCTTCTATGCTTGCAA+TGG | 0.488616 | 8.3:-3753653 | None:intergenic |
| GTAATATTCATCTTAACAAA+AGG | 0.492526 | 8.3:+3754168 | MS.gene96315:CDS |
| ATTCTATGAAGTAATTAACT+TGG | 0.497847 | 8.3:-3754869 | None:intergenic |
| ACGGAATCGAGGTGTAAGAT+TGG | 0.504184 | 8.3:-3753557 | None:intergenic |
| CAATGGTGCTGCATGATTGT+TGG | 0.507077 | 8.3:-3753582 | None:intergenic |
| GAACATGAAAGCTGATGAAG+AGG | 0.511062 | 8.3:+3754428 | MS.gene96315:CDS |
| GAAATTGGGATTGGGATAGT+GGG | 0.511786 | 8.3:+3754817 | MS.gene96315:CDS |
| AGCTTTCATGTTCAGATCAA+GGG | 0.528546 | 8.3:-3754418 | None:intergenic |
| GAGAAAACATCAACAGCTTG+TGG | 0.530991 | 8.3:+3754032 | MS.gene96315:CDS |
| AACAGTTAACTTGGGAGGGA+AGG | 0.532413 | 8.3:+3754758 | MS.gene96315:CDS |
| ACACAAGTTCAGATAAAGAC+AGG | 0.536618 | 8.3:+3754553 | MS.gene96315:CDS |
| CTGCTCCATCGTAGCACGAT+GGG | 0.538804 | 8.3:-3753244 | None:intergenic |
| GAAACTTTAAGTAACAAAGA+GGG | 0.538982 | 8.3:+3754132 | MS.gene96315:CDS |
| TAGAAACAGTTAACTTGGGA+GGG | 0.540519 | 8.3:+3754754 | MS.gene96315:CDS |
| TGATGATTCAAGTGAAAAGG+TGG | 0.542844 | 8.3:+3753705 | MS.gene96315:CDS |
| TGTTGATTTGGTATCAAACA+AGG | 0.544854 | 8.3:-3753827 | None:intergenic |
| TGATGCTTGATGAATTATTG+AGG | 0.548945 | 8.3:-3753522 | None:intergenic |
| CAATGATGATTCAAGTGAAA+AGG | 0.551243 | 8.3:+3753702 | MS.gene96315:CDS |
| AAACTGTTATCAATTTGTTG+TGG | 0.554067 | 8.3:+3754223 | MS.gene96315:CDS |
| CTTGCAATGGAATCAAAGAC+TGG | 0.557776 | 8.3:-3753640 | None:intergenic |
| GAATCGAGGTGTAAGATTGG+AGG | 0.571539 | 8.3:-3753554 | None:intergenic |
| TTAGAAACAGTTAACTTGGG+AGG | 0.573524 | 8.3:+3754753 | MS.gene96315:CDS |
| AAACTTTAAGTAACAAAGAG+GGG | 0.574195 | 8.3:+3754133 | MS.gene96315:CDS |
| AGTTTAGAAACAGTTAACTT+GGG | 0.581458 | 8.3:+3754750 | MS.gene96315:CDS |
| GTTAACTTGGGAGGGAAGGA+AGG | 0.581750 | 8.3:+3754762 | MS.gene96315:CDS |
| ATATTCATCTTAACAAAAGG+TGG | 0.591782 | 8.3:+3754171 | MS.gene96315:CDS |
| GTAAAGATTAGTCTTGCACT+TGG | 0.591838 | 8.3:+3753679 | MS.gene96315:CDS |
| TGCCTCCCATCGTGCTACGA+TGG | 0.606884 | 8.3:+3753239 | MS.gene96315:CDS |
| GGAATAGTTTCAGATTGCCA+TGG | 0.614508 | 8.3:-3753790 | None:intergenic |
| GATTGTTGGCGACGGAATCG+AGG | 0.618402 | 8.3:-3753568 | None:intergenic |
| TGCTGCATGATTGTTGGCGA+CGG | 0.618752 | 8.3:-3753576 | None:intergenic |
| GTGATTGAAGACATGTGTGT+GGG | 0.624972 | 8.3:+3754669 | MS.gene96315:CDS |
| TAATAGCATTTCAGAAAATG+GGG | 0.629233 | 8.3:-3754001 | None:intergenic |
| GATGATTCAAGTGAAAAGGT+GGG | 0.632079 | 8.3:+3753706 | MS.gene96315:CDS |
| CTCCATCGTAGCACGATGGG+AGG | 0.636688 | 8.3:-3753241 | None:intergenic |
| AAAGCTGATGAAGAGGAAGA+TGG | 0.637095 | 8.3:+3754435 | MS.gene96315:CDS |
| ACTGCTCCATCGTAGCACGA+TGG | 0.659873 | 8.3:-3753245 | None:intergenic |
| TGATTGAAGACATGTGTGTG+GGG | 0.676956 | 8.3:+3754670 | MS.gene96315:CDS |
| GGTGATTGAAGACATGTGTG+TGG | 0.690099 | 8.3:+3754668 | MS.gene96315:CDS |
| TATTGCAAGAGAATGTGCCA+TGG | 0.693666 | 8.3:+3753773 | MS.gene96315:CDS |
| GAATTGAAGAGAATGAAAAG+GGG | 0.732384 | 8.3:+3754328 | MS.gene96315:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGAAATTTCATTTACA+TGG | + | chr8.3:3753854-3753873 | MS.gene96315:CDS | 15.0% |
| !!! | AGTTTAATTTCAATGATAAA+AGG | + | chr8.3:3753605-3753624 | MS.gene96315:CDS | 15.0% |
| !!! | GTTTAATTTCAATGATAAAA+GGG | + | chr8.3:3753606-3753625 | MS.gene96315:CDS | 15.0% |
| !!! | TTTTTCTGTTTAAGATTAAA+GGG | + | chr8.3:3754589-3754608 | MS.gene96315:CDS | 15.0% |
| !!! | TTTTTTCTGTTTAAGATTAA+AGG | + | chr8.3:3754588-3754607 | MS.gene96315:CDS | 15.0% |
| !! | ATCATTGAAATTAAACTCAA+TGG | - | chr8.3:3753602-3753621 | None:intergenic | 20.0% |
| !! | ATTCTATGAAGTAATTAACT+TGG | - | chr8.3:3754872-3754891 | None:intergenic | 20.0% |
| !! | GTAATATTCATCTTAACAAA+AGG | + | chr8.3:3754168-3754187 | MS.gene96315:CDS | 20.0% |
| !!! | ATACATTTTAGACTTTGTTT+GGG | + | chr8.3:3754786-3754805 | MS.gene96315:CDS | 20.0% |
| !!! | TATACATTTTAGACTTTGTT+TGG | + | chr8.3:3754785-3754804 | MS.gene96315:CDS | 20.0% |
| !!! | TTCATTTTGTTTTGTTGATT+TGG | - | chr8.3:3753842-3753861 | None:intergenic | 20.0% |
| !!! | TTTACATGGTTATTTTTACA+AGG | + | chr8.3:3753868-3753887 | MS.gene96315:CDS | 20.0% |
| ! | AAACTTTAAGTAACAAAGAG+GGG | + | chr8.3:3754133-3754152 | MS.gene96315:CDS | 25.0% |
| ! | AGAAACACATTTGAATTCAA+TGG | - | chr8.3:3754504-3754523 | None:intergenic | 25.0% |
| ! | AGAATTGAAGAGAATGAAAA+GGG | + | chr8.3:3754327-3754346 | MS.gene96315:CDS | 25.0% |
| ! | AGTTTAGAAACAGTTAACTT+GGG | + | chr8.3:3754750-3754769 | MS.gene96315:CDS | 25.0% |
| ! | ATATTCATCTTAACAAAAGG+TGG | + | chr8.3:3754171-3754190 | MS.gene96315:CDS | 25.0% |
| ! | CTAACAAAATGTTTGAGAAA+TGG | + | chr8.3:3754706-3754725 | MS.gene96315:CDS | 25.0% |
| ! | CTAATAGCATTTCAGAAAAT+GGG | - | chr8.3:3754005-3754024 | None:intergenic | 25.0% |
| ! | GAAACTTTAAGTAACAAAGA+GGG | + | chr8.3:3754132-3754151 | MS.gene96315:CDS | 25.0% |
| ! | TAATAGCATTTCAGAAAATG+GGG | - | chr8.3:3754004-3754023 | None:intergenic | 25.0% |
| ! | TAGAATTGAAGAGAATGAAA+AGG | + | chr8.3:3754326-3754345 | MS.gene96315:CDS | 25.0% |
| ! | TCAATTGGATATGCTAAAAA+AGG | + | chr8.3:3753966-3753985 | MS.gene96315:CDS | 25.0% |
| ! | TGAAACTTTAAGTAACAAAG+AGG | + | chr8.3:3754131-3754150 | MS.gene96315:CDS | 25.0% |
| ! | TGAGAGAAATTTCATGAATT+GGG | - | chr8.3:3754088-3754107 | None:intergenic | 25.0% |
| ! | TGATAATAGAAATTGGGATT+GGG | + | chr8.3:3754809-3754828 | MS.gene96315:CDS | 25.0% |
| ! | TTTCATTCTCTTCAATTCTA+GGG | - | chr8.3:3754326-3754345 | None:intergenic | 25.0% |
| ! | TTTGGGTGATAATAGAAATT+GGG | + | chr8.3:3754803-3754822 | MS.gene96315:CDS | 25.0% |
| !! | TAATTAACTTGGATACTCTT+AGG | - | chr8.3:3754861-3754880 | None:intergenic | 25.0% |
| !! | TTTTCATTCTCTTCAATTCT+AGG | - | chr8.3:3754327-3754346 | None:intergenic | 25.0% |
| !!! | AAACTGTTATCAATTTGTTG+TGG | + | chr8.3:3754223-3754242 | MS.gene96315:CDS | 25.0% |
| !!! | GAATTTTAGTGTAGATGAAA+AGG | + | chr8.3:3754647-3754666 | MS.gene96315:CDS | 25.0% |
| !!! | TTGGATATTGACTCAAAATT+TGG | - | chr8.3:3753425-3753444 | None:intergenic | 25.0% |
| !!! | TTTTTAGCATATCCAATTGA+AGG | - | chr8.3:3753966-3753985 | None:intergenic | 25.0% |
| CAATGATGATTCAAGTGAAA+AGG | + | chr8.3:3753702-3753721 | MS.gene96315:CDS | 30.0% | |
| CAGTTTAGAAACAGTTAACT+TGG | + | chr8.3:3754749-3754768 | MS.gene96315:CDS | 30.0% | |
| CCTAATAGCATTTCAGAAAA+TGG | - | chr8.3:3754006-3754025 | None:intergenic | 30.0% | |
| CTGAGAGAAATTTCATGAAT+TGG | - | chr8.3:3754089-3754108 | None:intergenic | 30.0% | |
| GAATTGAAGAGAATGAAAAG+GGG | + | chr8.3:3754328-3754347 | MS.gene96315:CDS | 30.0% | |
| GTGATAATAGAAATTGGGAT+TGG | + | chr8.3:3754808-3754827 | MS.gene96315:CDS | 30.0% | |
| GTTTATATCATACTACGATG+CGG | - | chr8.3:3753300-3753319 | None:intergenic | 30.0% | |
| GTTTGGGTGATAATAGAAAT+TGG | + | chr8.3:3754802-3754821 | MS.gene96315:CDS | 30.0% | |
| TGATGCTTGATGAATTATTG+AGG | - | chr8.3:3753525-3753544 | None:intergenic | 30.0% | |
| TGTTTGTGGTAAGAAAAATG+TGG | + | chr8.3:3754623-3754642 | MS.gene96315:CDS | 30.0% | |
| TTCATGAAATTTCTCTCAGA+TGG | + | chr8.3:3754090-3754109 | MS.gene96315:CDS | 30.0% | |
| TTTATATCATACTACGATGC+GGG | - | chr8.3:3753299-3753318 | None:intergenic | 30.0% | |
| ! | AACAAGGCTTTTGATATTGA+AGG | - | chr8.3:3753814-3753833 | None:intergenic | 30.0% |
| ! | ATCAAATTCAGCTTTTCTCT+TGG | - | chr8.3:3754283-3754302 | None:intergenic | 30.0% |
| ! | TCAAATTCAGCTTTTCTCTT+GGG | - | chr8.3:3754282-3754301 | None:intergenic | 30.0% |
| ! | TTCTGAAAAAGGAAGCAAAA+AGG | + | chr8.3:3754359-3754378 | MS.gene96315:CDS | 30.0% |
| !! | TGTTGATTTGGTATCAAACA+AGG | - | chr8.3:3753830-3753849 | None:intergenic | 30.0% |
| !!! | CCATTTTCTGAAATGCTATT+AGG | + | chr8.3:3754003-3754022 | MS.gene96315:CDS | 30.0% |
| ACACAAGTTCAGATAAAGAC+AGG | + | chr8.3:3754553-3754572 | MS.gene96315:CDS | 35.0% | |
| AGCTTTCATGTTCAGATCAA+GGG | - | chr8.3:3754421-3754440 | None:intergenic | 35.0% | |
| AGTAACAAAGAGGGGAATTT+AGG | + | chr8.3:3754141-3754160 | MS.gene96315:CDS | 35.0% | |
| CTCTCAGATGGATATGAAAA+AGG | + | chr8.3:3754102-3754121 | MS.gene96315:CDS | 35.0% | |
| GATGATTCAAGTGAAAAGGT+GGG | + | chr8.3:3753706-3753725 | MS.gene96315:CDS | 35.0% | |
| TGATGATTCAAGTGAAAAGG+TGG | + | chr8.3:3753705-3753724 | MS.gene96315:CDS | 35.0% | |
| TTTACCTTCTATGCTTGCAA+TGG | - | chr8.3:3753656-3753675 | None:intergenic | 35.0% | |
| ! | CAAATTCAGCTTTTCTCTTG+GGG | - | chr8.3:3754281-3754300 | None:intergenic | 35.0% |
| ! | GCTATTGCAGAATCAGTTTT+TGG | + | chr8.3:3753925-3753944 | MS.gene96315:CDS | 35.0% |
| ! | TAGAAACAGTTAACTTGGGA+GGG | + | chr8.3:3754754-3754773 | MS.gene96315:CDS | 35.0% |
| ! | TTAGAAACAGTTAACTTGGG+AGG | + | chr8.3:3754753-3754772 | MS.gene96315:CDS | 35.0% |
| ! | TTGATGATATCGTAGTACGA+TGG | - | chr8.3:3753391-3753410 | None:intergenic | 35.0% |
| !! | GGGTTGTTGATTTCTGAAAA+AGG | + | chr8.3:3754348-3754367 | MS.gene96315:CDS | 35.0% |
| !! | GTAAAGATTAGTCTTGCACT+TGG | + | chr8.3:3753679-3753698 | MS.gene96315:CDS | 35.0% |
| !!! | AATTCTAGGGTTCTTGGTTT+TGG | - | chr8.3:3754313-3754332 | None:intergenic | 35.0% |
| !!! | AGTTTTTGGTTCAGCTGATT+TGG | + | chr8.3:3753939-3753958 | MS.gene96315:CDS | 35.0% |
| !!! | GATTTTGGTGCTGTTTGTTT+TGG | - | chr8.3:3753468-3753487 | None:intergenic | 35.0% |
| AAAGCTGATGAAGAGGAAGA+TGG | + | chr8.3:3754435-3754454 | MS.gene96315:CDS | 40.0% | |
| ACAAACAGCACCAAAATCAC+TGG | + | chr8.3:3753470-3753489 | MS.gene96315:intron | 40.0% | |
| AGAAATTGGGATTGGGATAG+TGG | + | chr8.3:3754816-3754835 | MS.gene96315:CDS | 40.0% | |
| AGCACCAAAATCACTGGAAT+AGG | + | chr8.3:3753476-3753495 | MS.gene96315:intron | 40.0% | |
| CACCAAAATCACTGGAATAG+GGG | + | chr8.3:3753478-3753497 | MS.gene96315:intron | 40.0% | |
| CAGCTTTCATGTTCAGATCA+AGG | - | chr8.3:3754422-3754441 | None:intergenic | 40.0% | |
| CTTGCAATGGAATCAAAGAC+TGG | - | chr8.3:3753643-3753662 | None:intergenic | 40.0% | |
| GAAATTGGGATTGGGATAGT+GGG | + | chr8.3:3754817-3754836 | MS.gene96315:CDS | 40.0% | |
| GAACATGAAAGCTGATGAAG+AGG | + | chr8.3:3754428-3754447 | MS.gene96315:CDS | 40.0% | |
| GAGAAAACATCAACAGCTTG+TGG | + | chr8.3:3754032-3754051 | MS.gene96315:CDS | 40.0% | |
| GATTCCATTGCAAGCATAGA+AGG | + | chr8.3:3753649-3753668 | MS.gene96315:CDS | 40.0% | |
| GCACCAAAATCACTGGAATA+GGG | + | chr8.3:3753477-3753496 | MS.gene96315:intron | 40.0% | |
| GGAATAGTTTCAGATTGCCA+TGG | - | chr8.3:3753793-3753812 | None:intergenic | 40.0% | |
| GGGTCATTTGAAGATGTTTG+TGG | + | chr8.3:3754609-3754628 | MS.gene96315:CDS | 40.0% | |
| GTGATTGAAGACATGTGTGT+GGG | + | chr8.3:3754669-3754688 | MS.gene96315:CDS | 40.0% | |
| GTTCTTCTCTTCAATGCTTG+TGG | - | chr8.3:3754199-3754218 | None:intergenic | 40.0% | |
| TATTGCAAGAGAATGTGCCA+TGG | + | chr8.3:3753773-3753792 | MS.gene96315:CDS | 40.0% | |
| TGATTGAAGACATGTGTGTG+GGG | + | chr8.3:3754670-3754689 | MS.gene96315:CDS | 40.0% | |
| TGGAGAAATCGTAGTACGAT+GGG | - | chr8.3:3753322-3753341 | None:intergenic | 40.0% | |
| !! | AGCTGATTTGGTCCTTCAAT+TGG | + | chr8.3:3753951-3753970 | MS.gene96315:CDS | 40.0% |
| !! | CTCTTCAATTCTAGGGTTCT+TGG | - | chr8.3:3754319-3754338 | None:intergenic | 40.0% |
| !!! | GTTTGTTTTGGTGTAGACAG+TGG | - | chr8.3:3753456-3753475 | None:intergenic | 40.0% |
| ACGGAATCGAGGTGTAAGAT+TGG | - | chr8.3:3753560-3753579 | None:intergenic | 45.0% | |
| CTCTTGGGGCTCAAGAAATT+AGG | - | chr8.3:3754267-3754286 | None:intergenic | 45.0% | |
| CTGGAGAAATCGTAGTACGA+TGG | - | chr8.3:3753323-3753342 | None:intergenic | 45.0% | |
| GAATCGAGGTGTAAGATTGG+AGG | - | chr8.3:3753557-3753576 | None:intergenic | 45.0% | |
| GGTGATTGAAGACATGTGTG+TGG | + | chr8.3:3754668-3754687 | MS.gene96315:CDS | 45.0% | |
| GTAGACAGTGGCATAGTTGT+TGG | - | chr8.3:3753444-3753463 | None:intergenic | 45.0% | |
| TAGTACGATGGTGAGTGTTC+TGG | - | chr8.3:3753359-3753378 | None:intergenic | 45.0% | |
| TATCATACTACGATGCGGGA+TGG | - | chr8.3:3753295-3753314 | None:intergenic | 45.0% | |
| TGGATGTCATCGTAGTACGA+TGG | - | chr8.3:3753371-3753390 | None:intergenic | 45.0% | |
| ! | AACAGTTAACTTGGGAGGGA+AGG | + | chr8.3:3754758-3754777 | MS.gene96315:CDS | 45.0% |
| ! | TGCCCCTATTCCAGTGATTT+TGG | - | chr8.3:3753483-3753502 | None:intergenic | 45.0% |
| !! | CAATGGTGCTGCATGATTGT+TGG | - | chr8.3:3753585-3753604 | None:intergenic | 45.0% |
| !! | GGATTGGGATAGTGGGTTTA+TGG | + | chr8.3:3754824-3754843 | MS.gene96315:CDS | 45.0% |
| !!! | GATGGTGAGTGTTCTGGTTT+TGG | - | chr8.3:3753353-3753372 | None:intergenic | 45.0% |
| !!! | TTCTGGTTTTGGTGTGCTAC+TGG | - | chr8.3:3753342-3753361 | None:intergenic | 45.0% |
| ACTACGATGCGGGATGGATA+AGG | - | chr8.3:3753289-3753308 | None:intergenic | 50.0% | |
| TGCTGCATGATTGTTGGCGA+CGG | - | chr8.3:3753579-3753598 | None:intergenic | 50.0% | |
| ! | GTTAACTTGGGAGGGAAGGA+AGG | + | chr8.3:3754762-3754781 | MS.gene96315:CDS | 50.0% |
| ACTGCTCCATCGTAGCACGA+TGG | - | chr8.3:3753248-3753267 | None:intergenic | 55.0% | |
| CTGCTCCATCGTAGCACGAT+GGG | - | chr8.3:3753247-3753266 | None:intergenic | 55.0% | |
| GATTGTTGGCGACGGAATCG+AGG | - | chr8.3:3753571-3753590 | None:intergenic | 55.0% | |
| CTCCATCGTAGCACGATGGG+AGG | - | chr8.3:3753244-3753263 | None:intergenic | 60.0% | |
| TGCCTCCCATCGTGCTACGA+TGG | + | chr8.3:3753239-3753258 | MS.gene96315:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 3753186 | 3754893 | 3753186 | ID=MS.gene96315 |
| chr8.3 | mRNA | 3753186 | 3754893 | 3753186 | ID=MS.gene96315.t1;Parent=MS.gene96315 |
| chr8.3 | exon | 3753186 | 3753277 | 3753186 | ID=MS.gene96315.t1.exon1;Parent=MS.gene96315.t1 |
| chr8.3 | CDS | 3753186 | 3753277 | 3753186 | ID=cds.MS.gene96315.t1;Parent=MS.gene96315.t1 |
| chr8.3 | exon | 3753498 | 3754893 | 3753498 | ID=MS.gene96315.t1.exon2;Parent=MS.gene96315.t1 |
| chr8.3 | CDS | 3753498 | 3754893 | 3753498 | ID=cds.MS.gene96315.t1;Parent=MS.gene96315.t1 |
| Gene Sequence |
| Protein sequence |
