AlfalfaGEDB | MS.gene96565

M. sativa cultivar XinJiangDaYe / MS.gene96565

KEGG: -
GO: -
PFAM: PF04884.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96565.t1	XP_003622932.2	96.2	392	14	1	22	413	118	508	1.50E-211	745.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96565.t1	Q67YT8	60.8	398	139	4	22	410	126	515	1.1e-130	468.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96565.t1	G7L194	96.2	392	14	1	22	413	118	508	1.1e-211	745.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050426	MS.gene96565	-0.813328	2.71E-51	-1.69E-46
MS.gene050670	MS.gene96565	0.815319	9.82E-52	-1.69E-46
MS.gene051860	MS.gene96565	0.803585	3.25E-49	-1.69E-46
MS.gene052011	MS.gene96565	-0.806664	7.37E-50	-1.69E-46
MS.gene052077	MS.gene96565	0.807719	4.41E-50	-1.69E-46
MS.gene052135	MS.gene96565	0.809883	1.52E-50	-1.69E-46
MS.gene052253	MS.gene96565	0.838786	2.34E-57	-1.69E-46
MS.gene054183	MS.gene96565	0.813759	2.18E-51	-1.69E-46
MS.gene054349	MS.gene96565	0.800876	1.17E-48	-1.69E-46
MS.gene055116	MS.gene96565	0.810713	1.01E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96565.t1	MTR_7g058500	96.173	392	14	1	22	413	118	508	0.0	773
MS.gene96565.t1	MTR_7g096920	28.253	269	167	6	9	274	51	296	9.31e-30	119
MS.gene96565.t1	MTR_4g134590	29.433	282	183	7	24	302	126	394	1.82e-28	117
MS.gene96565.t1	MTR_4g077650	29.134	254	166	5	24	275	114	355	3.92e-28	116
MS.gene96565.t1	MTR_5g044720	28.462	260	180	3	24	283	398	651	4.74e-25	108
MS.gene96565.t1	MTR_5g025160	27.966	236	164	4	24	259	188	417	6.12e-22	98.6
MS.gene96565.t1	MTR_7g068310	25.694	288	174	8	1	259	80	356	1.25e-16	82.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96565.t1	AT2G23470	60.804	398	139	4	22	410	126	515	8.49e-164	471
MS.gene96565.t1	AT5G49820	30.104	289	185	8	24	309	121	395	2.15e-32	128
MS.gene96565.t1	AT2G31190	30.078	256	162	5	9	261	68	309	3.29e-29	118
MS.gene96565.t1	AT2G31190	30.078	256	162	5	9	261	69	310	3.43e-29	118
MS.gene96565.t1	AT3G45890	29.661	236	160	3	24	259	207	436	2.07e-27	114
MS.gene96565.t1	AT1G13770	29.572	257	165	5	5	257	51	295	4.50e-25	106
MS.gene96565.t1	AT1G13770	28.223	287	184	6	3	280	38	311	9.33e-25	105
MS.gene96565.t1	AT1G13770	29.362	235	153	4	47	280	2	224	3.38e-22	97.4
MS.gene96565.t1	AT1G13770	28.175	252	166	5	3	245	38	283	3.87e-22	96.3
MS.gene96565.t1	AT5G01510	27.985	268	162	7	15	259	109	368	4.96e-18	86.3

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Find 98 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGATAAACAAAGAAA+TGG	0.422957	7.3:+46280679	None:intergenic
AAAGAAGTAATCAACTTTAT+GGG	0.421614	7.3:-46280273	MS.gene96565:CDS
AACAAATGGTGGGAATGGGT+TGG	0.477988	7.3:-46279039	MS.gene96565:CDS
AACTAATTTGATTGAACAAA+TGG	0.443306	7.3:-46279053	MS.gene96565:CDS
AAGAAATGGAGACCTGCTTG+TGG	0.610362	7.3:+46280693	None:intergenic
AAGAATCTAGTGACCTTATT+TGG	0.153598	7.3:+46283442	None:intergenic
AAGAGTCCTTCTGATGTAGC+AGG	0.542729	7.3:+46279183	None:intergenic
AAGGGCAGCAGCTGATGGAA+GGG	0.596105	7.3:+46282225	None:intergenic
AAGTGGAATATTACTAGTAT+AGG	0.390547	7.3:-46279157	MS.gene96565:CDS
AATGGTGGGAATGGGTTGGG+TGG	0.655520	7.3:-46279035	MS.gene96565:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCCAAGCTTAAACAAAC+AGG	-	chr7.3:46279556-46279575	MS.gene96565:intron	30.0%
AAGAATCTAGTGACCTTATT+TGG	+	chr7.3:46279035-46279054	None:intergenic	30.0%
AATCTTACTAACACCAAGTT+CGG	+	chr7.3:46280047-46280066	None:intergenic	30.0%
ACGAAACAGTCCTTAAAAAA+TGG	-	chr7.3:46279911-46279930	MS.gene96565:CDS	30.0%
AGCTAGATGAAAGTTCATTT+AGG	-	chr7.3:46280125-46280144	MS.gene96565:CDS	30.0%
ATAGTAACATTTCATCATGG+AGG	+	chr7.3:46281526-46281545	None:intergenic	30.0%
ATCAACTTTATGGGAGTTAA+AGG	-	chr7.3:46282210-46282229	MS.gene96565:CDS	30.0%
ATGTTAGACATGTTTCATGA+TGG	+	chr7.3:46283110-46283129	None:intergenic	30.0%
CCCATAGTATAAAGATCAAA+TGG	+	chr7.3:46283177-46283196	None:intergenic	30.0%
GATAAGGTCACAAATTCTTA+AGG	+	chr7.3:46281592-46281611	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	46278976	46283520	46278976	ID=MS.gene96565
chr7.3	mRNA	46278976	46283520	46278976	ID=MS.gene96565.t1;Parent=MS.gene96565
chr7.3	exon	46283456	46283520	46283456	ID=MS.gene96565.t1.exon1;Parent=MS.gene96565.t1
chr7.3	CDS	46283456	46283520	46283456	ID=cds.MS.gene96565.t1;Parent=MS.gene96565.t1
chr7.3	exon	46283237	46283324	46283237	ID=MS.gene96565.t1.exon2;Parent=MS.gene96565.t1
chr7.3	CDS	46283237	46283324	46283237	ID=cds.MS.gene96565.t1;Parent=MS.gene96565.t1
chr7.3	exon	46282138	46282284	46282138	ID=MS.gene96565.t1.exon3;Parent=MS.gene96565.t1
chr7.3	CDS	46282138	46282284	46282138	ID=cds.MS.gene96565.t1;Parent=MS.gene96565.t1
chr7.3	exon	46281662	46281808	46281662	ID=MS.gene96565.t1.exon4;Parent=MS.gene96565.t1
chr7.3	CDS	46281662	46281808	46281662	ID=cds.MS.gene96565.t1;Parent=MS.gene96565.t1
chr7.3	exon	46281147	46281209	46281147	ID=MS.gene96565.t1.exon5;Parent=MS.gene96565.t1
chr7.3	CDS	46281147	46281209	46281147	ID=cds.MS.gene96565.t1;Parent=MS.gene96565.t1
chr7.3	exon	46280984	46281060	46280984	ID=MS.gene96565.t1.exon6;Parent=MS.gene96565.t1
chr7.3	CDS	46280984	46281060	46280984	ID=cds.MS.gene96565.t1;Parent=MS.gene96565.t1
chr7.3	exon	46280611	46280716	46280611	ID=MS.gene96565.t1.exon7;Parent=MS.gene96565.t1
chr7.3	CDS	46280611	46280716	46280611	ID=cds.MS.gene96565.t1;Parent=MS.gene96565.t1
chr7.3	exon	46280265	46280367	46280265	ID=MS.gene96565.t1.exon8;Parent=MS.gene96565.t1
chr7.3	CDS	46280265	46280367	46280265	ID=cds.MS.gene96565.t1;Parent=MS.gene96565.t1
chr7.3	exon	46280036	46280184	46280036	ID=MS.gene96565.t1.exon9;Parent=MS.gene96565.t1
chr7.3	CDS	46280036	46280184	46280036	ID=cds.MS.gene96565.t1;Parent=MS.gene96565.t1
chr7.3	exon	46279869	46279934	46279869	ID=MS.gene96565.t1.exon10;Parent=MS.gene96565.t1
chr7.3	CDS	46279869	46279934	46279869	ID=cds.MS.gene96565.t1;Parent=MS.gene96565.t1
chr7.3	exon	46278976	46279206	46278976	ID=MS.gene96565.t1.exon11;Parent=MS.gene96565.t1
chr7.3	CDS	46278976	46279206	46278976	ID=cds.MS.gene96565.t1;Parent=MS.gene96565.t1

Gene Sequence

>MS.gene96565

ATGGAGGAGTTGAGAAAAGTTCACAACAAATTCGGCTACCCTTTGTGGTTAAGAGTCCAAATAAGGTCACTAGATTCTTCTGGAATGGTGGCTGCTTGGAGTTGGTCACTGTTAATGGTGGTGGTGGTTCTGCTTCTGATGATGATGGTTTGTTGAGGGTGTTTGGTTCTGTTGTGAGAGATTTTTTCATTCCTAGAGAGGTTAATGAGAATTATGTTGATTTTGTGAAGTGGAAGCTGCTTCATCGTGTTTTCAGCTCTGCACTTCAAGTTCTTGCTACTCAGGTGCTTATTAGATTCTTGATTTTTGTTTGTTTAGAAGCTAGTTGATTTGGAATTGACTTGTGTTATGTTTGGATAAATAGTTTTTTCAGTGCTTTATAGTATAACTATAAACACTTATCATATAAGTGCTTATGTATATAAGTTATTTTTATAGCAAAAGACTATAAGCTGTCTTCATGAGCTATCCTATAAAGTTTATGAAAATAAGTTGCATGTTATAAACTATTTTCATAGATTTTCATAGGCGCTTTGAAATAGTCTGACAGTTGTTTATGTCAGTATAAGCTTAAATAAGCAAATCCAAGCTTAAACAAACAGGTCCTTGTTCATGAATCTACTTGCATGCATGAGGGAGGGTTCAAACTTGGTTTATCAGCATTTGACATGTTCTGTGAACATTGTGAAAGGGGGTTAGGATTGTTTTGTTGTGTTATGTGATGGATTTGTTTGCTTTTGAAAATTGGTAGTTCCTCCCTGGTACATGCATTTAAGTGGAAAGATTCAAGATTCATATACAAATCTGCTGTGTTGCCATGTGTTGTGCTTGTTTTCAGGAGGGGAGAGAAAGTGAGCAAGCTAAGGCCTAGTTTGGAGATTAGATTTTAGCTTATGAGAGCTTCACAATAAAGATAAAAATGTGGTTTTTCACTTACGAAACAGTCCTTAAAAAATGGAGAGGCAGCAACTAATTCGAACTTATACGAGTAGCTATTATTTATAAGTCATGATTATTCTGAGAAGTTTTAAGTATCTCTTTTTCCATTAGTGCTTCTTTGAAATCTATCCGAACTTGGTGTTAGTAAGATTGTATGTATCCTAATCATTCATCAATGGATGCATGCGTTGCACTTTGTATACTCCATTAAGCTAGATGAAAGTTCATTTAGGTCTTGTTGTATTTGTTTATCTTGCTTGTATAAGAACTTACTATGTTACAATCAATTAATCTCAGGCAATGTTTACAGCCATAGGAGTCGGATACTCCAGTTCCCTTCCATCAGCTGCTGCCCTTAATTGGGTTTTAAAAGATGGTCTTGGACGACTAAGCAAATGCATATACACTGCTAGCCTAGCTTCTGCTTTTGATACTAACTTAAAGGTATTTTAACTTCCATTTTCAAAGGAATCAGTTTTCTTCTGTCGGCACTCAGCAGTTTCTGCAGGTGCCAACACTAGTTTTGGCATTTGATTAAAAAAAAAAAAAGGGTTAAATGCACTTTTGCCTCTTTTGCCATTTGTGTGAATTTTGGTTTACCCCCCTTGTAATTTTTTTAGGGGGCAAAAGTACATTTAACCTTAACTAAAATGTCACATGAACAACCGTGAAGTGCATGATGGTAATTCAAACTTCATTTGATATGTACTAATTATAAATTGAATCTGATTACTCTTTCTCTCTCTGTGCATGTGTGTACCTGCTTTAAAAAGAGAGTCAGGTTCACTACATCTGTTCTTTTTGTTGGAAGCATTGGACTTGAATTACTTACTCCTACATTTCCTCGATTCTTCCTACTGCTTGCGACTATTGCTAATATTGCTAAACAAATAAGCTTGGCATGCTACTTAGCAACTCGGGTAAGGATCAAACCACTATCGCATTAAGTTCTCTATTACATTTAATCTTTTATTTTACAAAAAAAAGCTTTCTTGGTTTGGAGCTACTCGCGTGATGATGTTACAACACTTGGGTGGTTAAGCAGTTTTACTCTTAGTTCCCTAATGTATAATGTATAATGATTTTGCAGAGACTAACACAGTATACCTCTTAGCAATTGCCTTTCAAATTCAATTATTTTTTTGCCATGTTCATATTTGTTACTATCTTTATCCCTTCTATTTTCCGTCTTGTGCATTGTCCGCCTTTTCCTTTTTATCTGAAGATTGTATGCATATACTTTTACGCAATTCTTCATATCATAAGTTTACCCGTCATGCAAAAGTTCCCTGCTTTTTTCATCTATATAGTATACTGATTGATATACTTCCTTTTTCCTGTGAATCTTGATATTTTCTTTTTGTTTACGCAGTCAGCTGTTCATCAAAGTTTTGCAAAAGCAGACAACCTTGGCGAAATTTCTGCCAAGGCACAGGTTAGCATAAGTGTTTTTCTTTTTTGTTTACCTTTCTTTAATCTGTTTATTCGTGGATTGTATTATGAATATTTAATATATTGCAGATTCAAACAGTGTGCTTTGACATCCTTGGTCTCATGCTTGCTGCCCTTGTTAATAAGTGGATTGGGAACCATCAAAGGTTGTTATTTCCTCCATGATGAAATGTTACTATTTATGTTTTGCTGTAAAACTGAGAGCTGATTGTAGTGTATTTACCTTAAGAATTTGTGACCTTATCGCTCTAAATAAAAGAGAAAAAAAAAACTTTAACTGTTGTTACAAGGCCAGGATGTATACTATAATAATGGACTTTTCTTGTCATGTATAGGTGTATGATATATTTTTCATGTTATTGCTTAAATAATTTGACTCGTTTTCTAACTTCAGTTATATCTTGGCTTTCAAGACCACAAGCAGGTCTCCATTTCTTTGTTTATCCCTTTTTTGCTTCCATGGACCTTTACGGGATTTATCAAGGACTAAAACATGTCCATCTGAAAACCTTGACTAAGGTATGTTTTCTGATGGCTTTAATTATGAAGTGGTGTTCAGATTTAAGATTTTTTTACTTTTGCACTTAACCGCCTGAAACTGAGTGATTTTGGAAGAAATGAACTGTGGTGCTCCTTCATTGTCTATTTTAACATAAAACGTCCATTTTGTTTTTCTTTTATTTAAACACAAGTTTTGGTTTTATAGTGTAGGACTTGTTGAGAGTATGTGTTTTACTGTCTTGTTGGTGCATTTTGTTTTAGGATAGGCTTGAAATCATTCTGAAAACTTGGATTGAGTTTGGATATGTGCCTTCCCCGGCAGATGTGAGCGAGAAAGAAGTAATCAACTTTATGGGAGTTAAAGGTAAAATGCGACGGACTCTTACATTCGTGTTTGATACTTTCCATGGTGAGGTTATAGTCAACTAATAAGATTTGATTCAGATAAAAGCTTATGGCCAATTAGAATTGGGTGCATAAATCCCAAGGACCGAATACCTGAGTGTTCAATGAAGACCATACAAAGCATAACTGATGAGGATTATTACTTTGTATGCATGGAGATCTTCGAAGGATTAAAAAGAACTGGCCAGGTGAGCATGATTATGAGATTATCTTGGTGAACTTCCTATAAAGTAGTTTTGTATTCTAATTGTTTTTTTATTTTGCTTCTTTTTGTCTGGCGATTTTCTAGCTCCGTATCCTTCTTTCCATCCGTGAAGGAGCTGAATCAAAGCATATAATTATGGGTTTGTTGCAGGTGATAAGACTATTCTTCTTAATGATTTTTCAACTACTATTATCAATATTGTTATTAATGTATTGTTGCTGCTAGCTAATTTGAATCCTCTCATGCTCCTTCTGTCAGTGTCATATTATGTCGGAGAAAGACACAAAGTCCCTCTTTGGTTAAACAACTTAATTAAGTGCTAATCGTATAAGTGTATGTATAAGCTGTCTGCATAACAAAAGATAAAATAAAATAAAGTCAAACCGTTTTAATATGTCATAAGTTGTTTTCATAAACTCTGTCAAACAGTTTCACAAATATTTATTCCAGTAGATAAGTTTAAATAAACCAATTCAACTAGGTCCAAAATCAGTTAAGAGTGGCTAACAATTATTTTCATAGGGTCCATTAAACTTGACTTTGTATGTTTCGCTGTATCCTCCCTTTCCTCTCATGTGATCAGAGAGGAGTACATTTTTTTTACATGAATCAAACGAAGTCATAATATCCCATCATGAAACATGTCTAACATCAGATAATTTAACTCTAAATCCTTTTTAATTAGTGAATCATCTTCCATTTGATCTTTATACTATGGGAGGGATAAAACCCTTTGGCCGTAAACCTGATTTACTTATTCTAATGATATTTTCATATGACATTTCTTTTTGAAATGTTTTTTCAATTTGTAGGCCTGCTACATCAGAAGGACTCTTCTTAAGTGGAATATTACTAGTATAGGGGAAAACAATGCATCAAGATCAGCAATAGAGGATTGGTCTGTAATTGTTGAGGATGGAAAGAGGTATGCACAAAGAGATGTAACTAATTTGATTGAACAAATGGTGGGAATGGGTTGGGTGGTGAAGAACATTTTATTGTCAAAGCAAGAACAGGCAAGATACAGTTTTGTGTATGATTAA

Protein sequence

>MS.gene96565.t1

MEELRKVHNKFGYPLWLRVQIREVNENYVDFVKWKLLHRVFSSALQVLATQAMFTAIGVGYSSSLPSAAALNWVLKDGLGRLSKCIYTASLASAFDTNLKRVRFTTSVLFVGSIGLELLTPTFPRFFLLLATIANIAKQISLACYLATRSAVHQSFAKADNLGEISAKAQIQTVCFDILGLMLAALVNKWIGNHQRPQAGLHFFVYPFFASMDLYGIYQGLKHVHLKTLTKDRLEIILKTWIEFGYVPSPADVSEKEVINFMGVKDKSLWPIRIGCINPKDRIPECSMKTIQSITDEDYYFVCMEIFEGLKRTGQLRILLSIREGAESKHIIMGLLQACYIRRTLLKWNITSIGENNASRSAIEDWSVIVEDGKRYAQRDVTNLIEQMVGMGWVVKNILLSKQEQARYSFVYD