Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97238.t1 | XP_013467004.1 | 94.4 | 359 | 15 | 3 | 1 | 356 | 1 | 357 | 1.20E-161 | 579.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97238.t1 | A0A072VG82 | 94.4 | 359 | 15 | 3 | 1 | 356 | 1 | 357 | 8.7e-162 | 579.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049808 | MS.gene97238 | 0.833269 | 5.88E-56 | -1.69E-46 |
| MS.gene050237 | MS.gene97238 | 0.815259 | 1.01E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene97238 | 0.810548 | 1.09E-50 | -1.69E-46 |
| MS.gene050808 | MS.gene97238 | 0.80236 | 5.82E-49 | -1.69E-46 |
| MS.gene051328 | MS.gene97238 | 0.81195 | 5.42E-51 | -1.69E-46 |
| MS.gene051719 | MS.gene97238 | 0.811652 | 6.29E-51 | -1.69E-46 |
| MS.gene051720 | MS.gene97238 | 0.80305 | 4.19E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene97238 | 0.834654 | 2.64E-56 | -1.69E-46 |
| MS.gene053678 | MS.gene97238 | 0.813994 | 1.93E-51 | -1.69E-46 |
| MS.gene053894 | MS.gene97238 | 0.807283 | 5.45E-50 | -1.69E-46 |
| MS.gene057287 | MS.gene97238 | 0.89376 | 4.66E-75 | -1.69E-46 |
| MS.gene057694 | MS.gene97238 | 0.823838 | 1.12E-53 | -1.69E-46 |
| MS.gene058009 | MS.gene97238 | 0.800172 | 1.63E-48 | -1.69E-46 |
| MS.gene058054 | MS.gene97238 | 0.808435 | 3.10E-50 | -1.69E-46 |
| MS.gene058055 | MS.gene97238 | 0.805064 | 1.60E-49 | -1.69E-46 |
| MS.gene058783 | MS.gene97238 | 0.804894 | 1.74E-49 | -1.69E-46 |
| MS.gene060587 | MS.gene97238 | 0.813938 | 1.99E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97238.t1 | MTR_1g041155 | 94.429 | 359 | 15 | 3 | 1 | 356 | 1 | 357 | 0.0 | 664 |
| MS.gene97238.t1 | MTR_1g076500 | 56.658 | 383 | 130 | 12 | 1 | 349 | 1 | 381 | 2.43e-130 | 378 |
| MS.gene97238.t1 | MTR_7g095960 | 44.444 | 369 | 172 | 11 | 4 | 356 | 5 | 356 | 1.59e-91 | 278 |
| MS.gene97238.t1 | MTR_1g070970 | 45.799 | 369 | 157 | 11 | 4 | 354 | 5 | 348 | 2.64e-87 | 267 |
| MS.gene97238.t1 | MTR_8g093440 | 40.845 | 142 | 77 | 1 | 153 | 287 | 20 | 161 | 1.03e-36 | 132 |
| MS.gene97238.t1 | MTR_4g132963 | 34.742 | 213 | 123 | 2 | 60 | 272 | 38 | 234 | 1.17e-36 | 134 |
| MS.gene97238.t1 | MTR_4g132940 | 34.742 | 213 | 123 | 2 | 60 | 272 | 38 | 234 | 1.17e-36 | 134 |
| MS.gene97238.t1 | MTR_8g093440 | 40.845 | 142 | 77 | 1 | 153 | 287 | 82 | 223 | 2.69e-36 | 132 |
| MS.gene97238.t1 | MTR_7g083080 | 37.778 | 225 | 107 | 9 | 64 | 273 | 50 | 256 | 6.75e-36 | 133 |
| MS.gene97238.t1 | MTR_4g132970 | 39.850 | 133 | 80 | 0 | 155 | 287 | 138 | 270 | 2.52e-34 | 128 |
| MS.gene97238.t1 | MTR_2g025520 | 43.478 | 138 | 74 | 1 | 161 | 298 | 142 | 275 | 8.97e-34 | 127 |
| MS.gene97238.t1 | MTR_2g013780 | 40.625 | 128 | 70 | 2 | 153 | 274 | 143 | 270 | 2.29e-32 | 123 |
| MS.gene97238.t1 | MTR_4g078310 | 39.683 | 126 | 67 | 2 | 153 | 270 | 119 | 243 | 2.91e-30 | 117 |
| MS.gene97238.t1 | MTR_4g088770 | 37.795 | 127 | 73 | 2 | 153 | 273 | 149 | 275 | 5.14e-30 | 117 |
| MS.gene97238.t1 | MTR_8g012240 | 31.250 | 240 | 126 | 8 | 51 | 273 | 41 | 258 | 1.44e-29 | 115 |
| MS.gene97238.t1 | MTR_4g088760 | 37.795 | 127 | 73 | 2 | 153 | 273 | 202 | 328 | 1.59e-29 | 117 |
| MS.gene97238.t1 | MTR_2g013880 | 29.560 | 159 | 106 | 2 | 126 | 278 | 116 | 274 | 7.53e-27 | 108 |
| MS.gene97238.t1 | MTR_7g053310 | 29.515 | 227 | 128 | 8 | 61 | 274 | 40 | 247 | 2.86e-26 | 106 |
| MS.gene97238.t1 | MTR_5g008720 | 34.677 | 124 | 75 | 1 | 153 | 270 | 97 | 220 | 1.23e-23 | 98.6 |
| MS.gene97238.t1 | MTR_1g103610 | 82.353 | 34 | 6 | 0 | 255 | 288 | 1 | 34 | 3.03e-13 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97238.t1 | AT3G22970 | 48.564 | 383 | 150 | 10 | 4 | 356 | 5 | 370 | 4.50e-105 | 313 |
| MS.gene97238.t1 | AT4G14620 | 49.451 | 364 | 145 | 14 | 4 | 354 | 2 | 339 | 1.16e-94 | 286 |
| MS.gene97238.t1 | AT2G38820 | 43.125 | 320 | 150 | 8 | 4 | 306 | 5 | 309 | 3.67e-83 | 255 |
| MS.gene97238.t1 | AT3G22970 | 50.794 | 252 | 96 | 5 | 118 | 356 | 23 | 259 | 7.67e-74 | 229 |
| MS.gene97238.t1 | AT3G54550 | 41.155 | 277 | 139 | 8 | 5 | 272 | 6 | 267 | 4.61e-61 | 197 |
| MS.gene97238.t1 | AT3G07350 | 31.621 | 253 | 152 | 6 | 51 | 290 | 34 | 278 | 3.39e-34 | 128 |
| MS.gene97238.t1 | AT2G38820 | 39.175 | 194 | 97 | 5 | 4 | 184 | 5 | 190 | 7.55e-34 | 124 |
| MS.gene97238.t1 | AT2G39650 | 43.902 | 123 | 63 | 1 | 157 | 273 | 52 | 174 | 3.00e-32 | 121 |
| MS.gene97238.t1 | AT3G25240 | 33.778 | 225 | 129 | 5 | 57 | 273 | 30 | 242 | 7.75e-32 | 121 |
| MS.gene97238.t1 | AT2G39650 | 43.902 | 123 | 63 | 1 | 157 | 273 | 114 | 236 | 8.00e-32 | 121 |
| MS.gene97238.t1 | AT4G32480 | 40.164 | 122 | 67 | 2 | 157 | 272 | 120 | 241 | 4.24e-28 | 111 |
| MS.gene97238.t1 | AT1G62420 | 30.698 | 215 | 121 | 6 | 64 | 272 | 38 | 230 | 5.76e-28 | 110 |
| MS.gene97238.t1 | AT2G20670 | 39.474 | 114 | 63 | 1 | 165 | 272 | 130 | 243 | 1.09e-26 | 107 |
| MS.gene97238.t1 | AT1G77145 | 35.000 | 140 | 73 | 2 | 150 | 271 | 72 | 211 | 2.35e-25 | 103 |
| MS.gene97238.t1 | AT1G12030 | 38.938 | 113 | 68 | 1 | 161 | 272 | 118 | 230 | 3.57e-25 | 103 |
| MS.gene97238.t1 | AT1G77160 | 34.247 | 146 | 78 | 2 | 150 | 277 | 22 | 167 | 4.66e-25 | 101 |
| MS.gene97238.t1 | AT1G77160 | 29.834 | 181 | 106 | 3 | 118 | 277 | 42 | 222 | 9.86e-25 | 101 |
| MS.gene97238.t1 | AT1G77145 | 39.583 | 96 | 48 | 1 | 186 | 271 | 59 | 154 | 5.24e-20 | 87.4 |
Find 83 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGTTTGCTTGGCGAAAA+TGG | 0.121680 | 1.3:-23961267 | MS.gene97238:CDS |
| CATCCATTTGCAGATCAAAA+TGG | 0.248714 | 1.3:-23960852 | MS.gene97238:CDS |
| TTCAACCTCCACTTCGAAAC+TGG | 0.330861 | 1.3:+23961374 | None:intergenic |
| GCCGCATCGGAGACTTGCTT+TGG | 0.348894 | 1.3:+23960440 | None:intergenic |
| AAGAAAAGAAGATTTGATTA+AGG | 0.362890 | 1.3:-23960911 | MS.gene97238:CDS |
| TCGGAGGTGGATAGTGATTC+TGG | 0.369464 | 1.3:-23960398 | MS.gene97238:CDS |
| GAGTCCAGCGTGGCAGTTAC+CGG | 0.378357 | 1.3:-23960297 | MS.gene97238:CDS |
| GCTGAAAAGCTTCAATCTCT+TGG | 0.409442 | 1.3:-23960883 | MS.gene97238:CDS |
| TTCTCTGAATCTATGTCAAT+CGG | 0.419113 | 1.3:+23961425 | None:intergenic |
| TCTTTAGTGGTATTGTTCTT+CGG | 0.421271 | 1.3:+23961323 | None:intergenic |
| ATTCCTCTTTCACCACTCTT+CGG | 0.422133 | 1.3:+23960266 | None:intergenic |
| GTGGTATTGTTCTTCGGAAA+AGG | 0.429831 | 1.3:+23961329 | None:intergenic |
| TGCTTTGGCCTAGCTGCCGC+CGG | 0.433998 | 1.3:+23960455 | None:intergenic |
| TCCACCACCACCATCTTTAG+TGG | 0.439948 | 1.3:+23961310 | None:intergenic |
| AGTCTCCGATGCGGCGGCGG+TGG | 0.440423 | 1.3:-23960432 | MS.gene97238:CDS |
| ATCCATTTGCAGATCAAAAT+GGG | 0.441823 | 1.3:-23960851 | MS.gene97238:CDS |
| GGATAGTGATTCTGGTGAAT+TGG | 0.451879 | 1.3:-23960390 | MS.gene97238:CDS |
| CTTAACTGAGTCAGTTGAAT+CGG | 0.458623 | 1.3:+23961112 | None:intergenic |
| CGATTCAACTGACTCAGTTA+AGG | 0.466446 | 1.3:-23961111 | MS.gene97238:intron |
| TTCGCCAAGCAAACAGAGCT+TGG | 0.466708 | 1.3:+23961272 | None:intergenic |
| AAAACAAATTCTTGTCCTGC+TGG | 0.468712 | 1.3:-23960826 | MS.gene97238:intron |
| GGAACCAAGCTCTGTTTGCT+TGG | 0.476354 | 1.3:-23961276 | MS.gene97238:CDS |
| AGAGAAAGCCACTACGGAAC+TGG | 0.478102 | 1.3:-23961408 | MS.gene97238:CDS |
| CCACTCTTCGGTTTCACCGC+CGG | 0.488504 | 1.3:+23960278 | None:intergenic |
| GCAAGTCTCCGATGCGGCGG+CGG | 0.496129 | 1.3:-23960435 | MS.gene97238:CDS |
| CGAGACGGTGGTTGAAGTTG+CGG | 0.502860 | 1.3:+23961215 | None:intergenic |
| AAGAACAATACCACTAAAGA+TGG | 0.505083 | 1.3:-23961320 | MS.gene97238:CDS |
| GAGTGGTGAAAGAGGAATGA+AGG | 0.505285 | 1.3:-23960261 | MS.gene97238:CDS |
| TGGATTAGCTTCTTTGCTGA+AGG | 0.511501 | 1.3:-23960234 | MS.gene97238:CDS |
| GGAGAAAGCTTCGCCGGAGG+AGG | 0.512134 | 1.3:-23960351 | MS.gene97238:CDS |
| TGGTGGTGGAGTTGCTGAGT+TGG | 0.512259 | 1.3:-23961297 | MS.gene97238:CDS |
| TTCGCCGGAGGAGGTAGTTA+CGG | 0.512281 | 1.3:-23960342 | MS.gene97238:CDS |
| ACCACTAAAGATGGTGGTGG+TGG | 0.516726 | 1.3:-23961311 | MS.gene97238:CDS |
| AAGCAGAGTTTGAAGAAGAA+AGG | 0.517627 | 1.3:-23960533 | MS.gene97238:CDS |
| ACCGCCGGTAACTGCCACGC+TGG | 0.521213 | 1.3:+23960293 | None:intergenic |
| GAAAATGGTTCAGAGTTTCA+TGG | 0.527012 | 1.3:-23961252 | MS.gene97238:CDS |
| GGATCTCTCCGGCGGCAGCT+AGG | 0.528128 | 1.3:-23960463 | MS.gene97238:CDS |
| TGTTTCCACCGCCGCCGCAT+CGG | 0.530760 | 1.3:+23960427 | None:intergenic |
| GGAAACAGTTTCATCGGAGG+TGG | 0.532775 | 1.3:-23960411 | MS.gene97238:CDS |
| GGTGGTTGAAGTTGCGGTTG+CGG | 0.536574 | 1.3:+23961221 | None:intergenic |
| CGTCACCGTCATGTCGGAGG+CGG | 0.549114 | 1.3:-23960558 | MS.gene97238:CDS |
| CTGAATCTATGTCAATCGGT+TGG | 0.551079 | 1.3:+23961429 | None:intergenic |
| TCAATTCATTGATGCGATTG+TGG | 0.553988 | 1.3:-23960714 | MS.gene97238:CDS |
| TGGTGAGGAGAAAGCTTCGC+CGG | 0.554242 | 1.3:-23960357 | MS.gene97238:CDS |
| AAACCGAAGAGTGGTGAAAG+AGG | 0.554832 | 1.3:-23960269 | MS.gene97238:CDS |
| GAAAGAGGAATGAAGGTGAC+TGG | 0.556629 | 1.3:-23960254 | MS.gene97238:CDS |
| TTTCGAAGTGGAGGTTGAAG+AGG | 0.556890 | 1.3:-23961370 | MS.gene97238:CDS |
| GGCGGTGGAAACAGTTTCAT+CGG | 0.562645 | 1.3:-23960417 | MS.gene97238:CDS |
| CGTTCTTCAACACTTACACA+AGG | 0.565445 | 1.3:+23960988 | None:intergenic |
| GAAGATGATTTCGATTTCAA+CGG | 0.567151 | 1.3:-23961155 | MS.gene97238:CDS |
| CTTGTGTAAGTGTTGAAGAA+CGG | 0.570166 | 1.3:-23960987 | MS.gene97238:CDS |
| ATGTAATCGCGCTTCCTCCA+CGG | 0.582747 | 1.3:+23960497 | None:intergenic |
| CTTCGCCGCCTCCGACATGA+CGG | 0.584516 | 1.3:+23960553 | None:intergenic |
| TTCATTGATGCGATTGTGGA+AGG | 0.586622 | 1.3:-23960710 | MS.gene97238:CDS |
| GCCGCCGTAACTACCTCCTC+CGG | 0.598847 | 1.3:+23960338 | None:intergenic |
| ATGAACCAGTTTCGAAGTGG+AGG | 0.599985 | 1.3:-23961379 | MS.gene97238:CDS |
| ATTGCGAACCAGTTCCGTAG+TGG | 0.610392 | 1.3:+23961400 | None:intergenic |
| GTTAGCGAAGTGGATCTCTC+CGG | 0.616423 | 1.3:-23960474 | MS.gene97238:CDS |
| AGATTCAGAGAAAGCCACTA+CGG | 0.617727 | 1.3:-23961414 | MS.gene97238:CDS |
| AAAGCAAGTCTCCGATGCGG+CGG | 0.623703 | 1.3:-23960438 | MS.gene97238:CDS |
| GAATGCATGTTCCGCCGTGG+AGG | 0.625206 | 1.3:-23960511 | MS.gene97238:CDS |
| GCAGATCGTCACCGTCATGT+CGG | 0.626575 | 1.3:-23960564 | MS.gene97238:CDS |
| GAAATCGAAATCATCTTCGT+CGG | 0.627970 | 1.3:+23961160 | None:intergenic |
| GCAATGAACCAGTTTCGAAG+TGG | 0.634899 | 1.3:-23961382 | MS.gene97238:CDS |
| AACAATACCACTAAAGATGG+TGG | 0.638792 | 1.3:-23961317 | MS.gene97238:CDS |
| TCAATCGGTTGGATCTTCAA+CGG | 0.649259 | 1.3:+23961440 | None:intergenic |
| GCGATTACATGTTAGCGAAG+TGG | 0.650775 | 1.3:-23960484 | MS.gene97238:CDS |
| CAGTTACAGCGGTTACGAGA+CGG | 0.650994 | 1.3:+23961200 | None:intergenic |
| GATCGTCACCGTCATGTCGG+AGG | 0.651203 | 1.3:-23960561 | MS.gene97238:CDS |
| TCCAGCGTGGCAGTTACCGG+CGG | 0.657779 | 1.3:-23960294 | MS.gene97238:CDS |
| AGCGAAGTGGATCTCTCCGG+CGG | 0.660131 | 1.3:-23960471 | MS.gene97238:CDS |
| CCGGCGGTGAAACCGAAGAG+TGG | 0.661349 | 1.3:-23960278 | MS.gene97238:CDS |
| AATACCACTAAAGATGGTGG+TGG | 0.666485 | 1.3:-23961314 | MS.gene97238:CDS |
| AAGGAATGCATGTTCCGCCG+TGG | 0.669326 | 1.3:-23960514 | MS.gene97238:CDS |
| GGCGGCGACAGCGACAGCGA+CGG | 0.672784 | 1.3:-23960321 | MS.gene97238:CDS |
| GCCGGAGGAGGTAGTTACGG+CGG | 0.688861 | 1.3:-23960339 | MS.gene97238:CDS |
| GGTGGAAACAGTTTCATCGG+AGG | 0.697111 | 1.3:-23960414 | MS.gene97238:CDS |
| TAGCGTTGAAGCAGTTACAG+CGG | 0.707056 | 1.3:+23961189 | None:intergenic |
| TGAGGAGAAAGCTTCGCCGG+AGG | 0.709522 | 1.3:-23960354 | MS.gene97238:CDS |
| GCCAAAGCAAGTCTCCGATG+CGG | 0.718766 | 1.3:-23960441 | MS.gene97238:CDS |
| TTACAGCGGTTACGAGACGG+TGG | 0.731805 | 1.3:+23961203 | None:intergenic |
| CAGCGACGGTGAGTCCAGCG+TGG | 0.734694 | 1.3:-23960307 | MS.gene97238:CDS |
| TAATCGCGCTTCCTCCACGG+CGG | 0.770748 | 1.3:+23960500 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGTTTTTTATTTTGATTT+TGG | - | chr1.3:23960633-23960652 | MS.gene97238:CDS | 10.0% |
| !! | AAGAAAAGAAGATTTGATTA+AGG | - | chr1.3:23960758-23960777 | MS.gene97238:intron | 20.0% |
| !!! | ATCGTTTTTTGTTTTGTTTT+AGG | - | chr1.3:23960926-23960945 | MS.gene97238:CDS | 20.0% |
| !!! | TATTGATATCGATTTTCGAT+CGG | - | chr1.3:23960994-23961013 | MS.gene97238:CDS | 25.0% |
| AAGAACAATACCACTAAAGA+TGG | - | chr1.3:23960349-23960368 | MS.gene97238:CDS | 30.0% | |
| ATCCATTTGCAGATCAAAAT+GGG | - | chr1.3:23960818-23960837 | MS.gene97238:intron | 30.0% | |
| GAAGATGATTTCGATTTCAA+CGG | - | chr1.3:23960514-23960533 | MS.gene97238:CDS | 30.0% | |
| TCTTTAGTGGTATTGTTCTT+CGG | + | chr1.3:23960349-23960368 | None:intergenic | 30.0% | |
| TTAGAGAATTAATTACCAGC+AGG | + | chr1.3:23960861-23960880 | None:intergenic | 30.0% | |
| TTCTCTGAATCTATGTCAAT+CGG | + | chr1.3:23960247-23960266 | None:intergenic | 30.0% | |
| ! | TTTTTCCCGACGAAAATATA+CGG | + | chr1.3:23961073-23961092 | None:intergenic | 30.0% |
| AAAACAAATTCTTGTCCTGC+TGG | - | chr1.3:23960843-23960862 | MS.gene97238:CDS | 35.0% | |
| AACAATACCACTAAAGATGG+TGG | - | chr1.3:23960352-23960371 | MS.gene97238:CDS | 35.0% | |
| AAGCAGAGTTTGAAGAAGAA+AGG | - | chr1.3:23961136-23961155 | MS.gene97238:CDS | 35.0% | |
| CATCCATTTGCAGATCAAAA+TGG | - | chr1.3:23960817-23960836 | MS.gene97238:intron | 35.0% | |
| CTTAACTGAGTCAGTTGAAT+CGG | + | chr1.3:23960560-23960579 | None:intergenic | 35.0% | |
| GAAAATGGTTCAGAGTTTCA+TGG | - | chr1.3:23960417-23960436 | MS.gene97238:CDS | 35.0% | |
| GAAATCGAAATCATCTTCGT+CGG | + | chr1.3:23960512-23960531 | None:intergenic | 35.0% | |
| TCAATTCATTGATGCGATTG+TGG | - | chr1.3:23960955-23960974 | MS.gene97238:CDS | 35.0% | |
| ! | GTATATTTTCGTCGGGAAAA+AGG | - | chr1.3:23961072-23961091 | MS.gene97238:intron | 35.0% |
| !! | CTTGTGTAAGTGTTGAAGAA+CGG | - | chr1.3:23960682-23960701 | MS.gene97238:CDS | 35.0% |
| AGATTCAGAGAAAGCCACTA+CGG | - | chr1.3:23960255-23960274 | MS.gene97238:CDS | 40.0% | |
| ATTCCTCTTTCACCACTCTT+CGG | + | chr1.3:23961406-23961425 | None:intergenic | 40.0% | |
| CGTTCTTCAACACTTACACA+AGG | + | chr1.3:23960684-23960703 | None:intergenic | 40.0% | |
| CTGAATCTATGTCAATCGGT+TGG | + | chr1.3:23960243-23960262 | None:intergenic | 40.0% | |
| GCTGAAAAGCTTCAATCTCT+TGG | - | chr1.3:23960786-23960805 | MS.gene97238:intron | 40.0% | |
| GGATAGTGATTCTGGTGAAT+TGG | - | chr1.3:23961279-23961298 | MS.gene97238:CDS | 40.0% | |
| GTGGTATTGTTCTTCGGAAA+AGG | + | chr1.3:23960343-23960362 | None:intergenic | 40.0% | |
| TCAATCGGTTGGATCTTCAA+CGG | + | chr1.3:23960232-23960251 | None:intergenic | 40.0% | |
| TTCATTGATGCGATTGTGGA+AGG | - | chr1.3:23960959-23960978 | MS.gene97238:CDS | 40.0% | |
| ! | AATACCACTAAAGATGGTGG+TGG | - | chr1.3:23960355-23960374 | MS.gene97238:CDS | 40.0% |
| ! | CGATTCAACTGACTCAGTTA+AGG | - | chr1.3:23960558-23960577 | MS.gene97238:CDS | 40.0% |
| ! | TCGCTTCCGTATATTTTCGT+CGG | - | chr1.3:23961064-23961083 | MS.gene97238:intron | 40.0% |
| !! | CTCCCATTTTGATCTGCAAA+TGG | + | chr1.3:23960823-23960842 | None:intergenic | 40.0% |
| !! | GGTGAATTGGAGCTGATTTT+TGG | - | chr1.3:23961292-23961311 | MS.gene97238:CDS | 40.0% |
| !! | TGGATTAGCTTCTTTGCTGA+AGG | - | chr1.3:23961435-23961454 | MS.gene97238:CDS | 40.0% |
| !!! | ATTGGAGCTGATTTTTGGTG+AGG | - | chr1.3:23961297-23961316 | MS.gene97238:CDS | 40.0% |
| AAACCGAAGAGTGGTGAAAG+AGG | - | chr1.3:23961400-23961419 | MS.gene97238:CDS | 45.0% | |
| ATGAACCAGTTTCGAAGTGG+AGG | - | chr1.3:23960290-23960309 | MS.gene97238:CDS | 45.0% | |
| CTCTGTTTGCTTGGCGAAAA+TGG | - | chr1.3:23960402-23960421 | MS.gene97238:CDS | 45.0% | |
| GAAAGAGGAATGAAGGTGAC+TGG | - | chr1.3:23961415-23961434 | MS.gene97238:CDS | 45.0% | |
| GAGTGGTGAAAGAGGAATGA+AGG | - | chr1.3:23961408-23961427 | MS.gene97238:CDS | 45.0% | |
| GCAATGAACCAGTTTCGAAG+TGG | - | chr1.3:23960287-23960306 | MS.gene97238:CDS | 45.0% | |
| GCGATTACATGTTAGCGAAG+TGG | - | chr1.3:23961185-23961204 | MS.gene97238:CDS | 45.0% | |
| TTCAACCTCCACTTCGAAAC+TGG | + | chr1.3:23960298-23960317 | None:intergenic | 45.0% | |
| TTTCGAAGTGGAGGTTGAAG+AGG | - | chr1.3:23960299-23960318 | MS.gene97238:CDS | 45.0% | |
| ! | CGCTTCCGTATATTTTCGTC+GGG | - | chr1.3:23961065-23961084 | MS.gene97238:intron | 45.0% |
| ! | TAGCGTTGAAGCAGTTACAG+CGG | + | chr1.3:23960483-23960502 | None:intergenic | 45.0% |
| ! | TTTTCGTCGGGAAAAAGGAG+CGG | - | chr1.3:23961077-23961096 | MS.gene97238:intron | 45.0% |
| AGAGAAAGCCACTACGGAAC+TGG | - | chr1.3:23960261-23960280 | MS.gene97238:CDS | 50.0% | |
| ATGTAATCGCGCTTCCTCCA+CGG | + | chr1.3:23961175-23961194 | None:intergenic | 50.0% | |
| ATTGCGAACCAGTTCCGTAG+TGG | + | chr1.3:23960272-23960291 | None:intergenic | 50.0% | |
| CAGTTACAGCGGTTACGAGA+CGG | + | chr1.3:23960472-23960491 | None:intergenic | 50.0% | |
| GGAAACAGTTTCATCGGAGG+TGG | - | chr1.3:23961258-23961277 | MS.gene97238:CDS | 50.0% | |
| GGAACCAAGCTCTGTTTGCT+TGG | - | chr1.3:23960393-23960412 | MS.gene97238:CDS | 50.0% | |
| GGCGGTGGAAACAGTTTCAT+CGG | - | chr1.3:23961252-23961271 | MS.gene97238:CDS | 50.0% | |
| GGTGGAAACAGTTTCATCGG+AGG | - | chr1.3:23961255-23961274 | MS.gene97238:CDS | 50.0% | |
| GTTAGCGAAGTGGATCTCTC+CGG | - | chr1.3:23961195-23961214 | MS.gene97238:CDS | 50.0% | |
| TCCACCACCACCATCTTTAG+TGG | + | chr1.3:23960362-23960381 | None:intergenic | 50.0% | |
| TCGGAGGTGGATAGTGATTC+TGG | - | chr1.3:23961271-23961290 | MS.gene97238:CDS | 50.0% | |
| TTCGCCAAGCAAACAGAGCT+TGG | + | chr1.3:23960400-23960419 | None:intergenic | 50.0% | |
| !! | ACCACTAAAGATGGTGGTGG+TGG | - | chr1.3:23960358-23960377 | MS.gene97238:CDS | 50.0% |
| AAAGCAAGTCTCCGATGCGG+CGG | - | chr1.3:23961231-23961250 | MS.gene97238:CDS | 55.0% | |
| AAGGAATGCATGTTCCGCCG+TGG | - | chr1.3:23961155-23961174 | MS.gene97238:CDS | 55.0% | |
| CGAGACGGTGGTTGAAGTTG+CGG | + | chr1.3:23960457-23960476 | None:intergenic | 55.0% | |
| GCAGATCGTCACCGTCATGT+CGG | - | chr1.3:23961105-23961124 | MS.gene97238:intron | 55.0% | |
| GCCAAAGCAAGTCTCCGATG+CGG | - | chr1.3:23961228-23961247 | MS.gene97238:CDS | 55.0% | |
| GGTGGTTGAAGTTGCGGTTG+CGG | + | chr1.3:23960451-23960470 | None:intergenic | 55.0% | |
| TGGTGAGGAGAAAGCTTCGC+CGG | - | chr1.3:23961312-23961331 | MS.gene97238:CDS | 55.0% | |
| TTACAGCGGTTACGAGACGG+TGG | + | chr1.3:23960469-23960488 | None:intergenic | 55.0% | |
| TTCGCCGGAGGAGGTAGTTA+CGG | - | chr1.3:23961327-23961346 | MS.gene97238:CDS | 55.0% | |
| !! | TGGTGGTGGAGTTGCTGAGT+TGG | - | chr1.3:23960372-23960391 | MS.gene97238:CDS | 55.0% |
| AGCGAAGTGGATCTCTCCGG+CGG | - | chr1.3:23961198-23961217 | MS.gene97238:CDS | 60.0% | |
| CCACTCTTCGGTTTCACCGC+CGG | + | chr1.3:23961394-23961413 | None:intergenic | 60.0% | |
| GAATGCATGTTCCGCCGTGG+AGG | - | chr1.3:23961158-23961177 | MS.gene97238:CDS | 60.0% | |
| GAGTCCAGCGTGGCAGTTAC+CGG | - | chr1.3:23961372-23961391 | MS.gene97238:CDS | 60.0% | |
| GATCGTCACCGTCATGTCGG+AGG | - | chr1.3:23961108-23961127 | MS.gene97238:intron | 60.0% | |
| TAATCGCGCTTCCTCCACGG+CGG | + | chr1.3:23961172-23961191 | None:intergenic | 60.0% | |
| TGAGGAGAAAGCTTCGCCGG+AGG | - | chr1.3:23961315-23961334 | MS.gene97238:CDS | 60.0% | |
| ! | GCCGCATCGGAGACTTGCTT+TGG | + | chr1.3:23961232-23961251 | None:intergenic | 60.0% |
| CCGGCGGTGAAACCGAAGAG+TGG | - | chr1.3:23961391-23961410 | MS.gene97238:CDS | 65.0% | |
| CGTCACCGTCATGTCGGAGG+CGG | - | chr1.3:23961111-23961130 | MS.gene97238:intron | 65.0% | |
| CTTCGCCGCCTCCGACATGA+CGG | + | chr1.3:23961119-23961138 | None:intergenic | 65.0% | |
| GCCGCCGTAACTACCTCCTC+CGG | + | chr1.3:23961334-23961353 | None:intergenic | 65.0% | |
| GCCGGAGGAGGTAGTTACGG+CGG | - | chr1.3:23961330-23961349 | MS.gene97238:CDS | 65.0% | |
| GGAGAAAGCTTCGCCGGAGG+AGG | - | chr1.3:23961318-23961337 | MS.gene97238:CDS | 65.0% | |
| TCCAGCGTGGCAGTTACCGG+CGG | - | chr1.3:23961375-23961394 | MS.gene97238:CDS | 65.0% | |
| TGCTTTGGCCTAGCTGCCGC+CGG | + | chr1.3:23961217-23961236 | None:intergenic | 65.0% | |
| TGTTTCCACCGCCGCCGCAT+CGG | + | chr1.3:23961245-23961264 | None:intergenic | 65.0% | |
| ACCGCCGGTAACTGCCACGC+TGG | + | chr1.3:23961379-23961398 | None:intergenic | 70.0% | |
| CAGCGACGGTGAGTCCAGCG+TGG | - | chr1.3:23961362-23961381 | MS.gene97238:CDS | 70.0% | |
| GCAAGTCTCCGATGCGGCGG+CGG | - | chr1.3:23961234-23961253 | MS.gene97238:CDS | 70.0% | |
| GGATCTCTCCGGCGGCAGCT+AGG | - | chr1.3:23961206-23961225 | MS.gene97238:CDS | 70.0% | |
| AGTCTCCGATGCGGCGGCGG+TGG | - | chr1.3:23961237-23961256 | MS.gene97238:CDS | 75.0% | |
| GGCGGCGACAGCGACAGCGA+CGG | - | chr1.3:23961348-23961367 | MS.gene97238:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 23960223 | 23961468 | 23960223 | ID=MS.gene97238 |
| chr1.3 | mRNA | 23960223 | 23961468 | 23960223 | ID=MS.gene97238.t1;Parent=MS.gene97238 |
| chr1.3 | exon | 23961112 | 23961468 | 23961112 | ID=MS.gene97238.t1.exon1;Parent=MS.gene97238.t1 |
| chr1.3 | CDS | 23961112 | 23961468 | 23961112 | ID=cds.MS.gene97238.t1;Parent=MS.gene97238.t1 |
| chr1.3 | exon | 23960827 | 23961019 | 23960827 | ID=MS.gene97238.t1.exon2;Parent=MS.gene97238.t1 |
| chr1.3 | CDS | 23960827 | 23961019 | 23960827 | ID=cds.MS.gene97238.t1;Parent=MS.gene97238.t1 |
| chr1.3 | exon | 23960223 | 23960743 | 23960223 | ID=MS.gene97238.t1.exon3;Parent=MS.gene97238.t1 |
| chr1.3 | CDS | 23960223 | 23960743 | 23960223 | ID=cds.MS.gene97238.t1;Parent=MS.gene97238.t1 |
| Gene Sequence |
| Protein sequence |
