Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053894.t1 | XP_003614503.2 | 98.6 | 488 | 7 | 0 | 3 | 490 | 4 | 491 | 5.70E-271 | 943 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053894.t1 | Q869R1 | 25.9 | 441 | 297 | 10 | 36 | 465 | 134 | 555 | 8.3e-29 | 129.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053894.t1 | G7JYE2 | 98.6 | 488 | 7 | 0 | 3 | 490 | 4 | 491 | 4.1e-271 | 943.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049404 | MS.gene053894 | 0.801964 | 7.02E-49 | -1.69E-46 |
| MS.gene050020 | MS.gene053894 | 0.826436 | 2.72E-54 | -1.69E-46 |
| MS.gene050807 | MS.gene053894 | 0.827792 | 1.29E-54 | -1.69E-46 |
| MS.gene050808 | MS.gene053894 | 0.822959 | 1.79E-53 | -1.69E-46 |
| MS.gene052516 | MS.gene053894 | 0.800145 | 1.65E-48 | -1.69E-46 |
| MS.gene052665 | MS.gene053894 | 0.827612 | 1.42E-54 | -1.69E-46 |
| MS.gene053894 | MS.gene057060 | 0.800659 | 1.30E-48 | -1.69E-46 |
| MS.gene053894 | MS.gene057444 | 0.811737 | 6.03E-51 | -1.69E-46 |
| MS.gene053894 | MS.gene061947 | 0.83833 | 3.07E-57 | -1.69E-46 |
| MS.gene053894 | MS.gene062743 | 0.809791 | 1.59E-50 | -1.69E-46 |
| MS.gene053894 | MS.gene065347 | 0.812791 | 3.55E-51 | -1.69E-46 |
| MS.gene053894 | MS.gene067071 | 0.800224 | 1.59E-48 | -1.69E-46 |
| MS.gene053894 | MS.gene067485 | 0.824959 | 6.08E-54 | -1.69E-46 |
| MS.gene053894 | MS.gene071247 | 0.824165 | 9.36E-54 | -1.69E-46 |
| MS.gene053894 | MS.gene072397 | -0.808124 | 3.61E-50 | -1.69E-46 |
| MS.gene053894 | MS.gene22897 | 0.805055 | 1.61E-49 | -1.69E-46 |
| MS.gene053894 | MS.gene23105 | 0.827237 | 1.75E-54 | -1.69E-46 |
| MS.gene053894 | MS.gene27482 | 0.81704 | 4.05E-52 | -1.69E-46 |
| MS.gene053894 | MS.gene34180 | 0.804961 | 1.68E-49 | -1.69E-46 |
| MS.gene053894 | MS.gene34233 | 0.801367 | 9.31E-49 | -1.69E-46 |
| MS.gene053894 | MS.gene35473 | 0.803059 | 4.18E-49 | -1.69E-46 |
| MS.gene053894 | MS.gene41103 | -0.806737 | 7.11E-50 | -1.69E-46 |
| MS.gene053894 | MS.gene45918 | 0.800101 | 1.69E-48 | -1.69E-46 |
| MS.gene053894 | MS.gene47875 | 0.8028 | 4.72E-49 | -1.69E-46 |
| MS.gene053894 | MS.gene51765 | 0.821485 | 3.94E-53 | -1.69E-46 |
| MS.gene053894 | MS.gene53586 | 0.818802 | 1.62E-52 | -1.69E-46 |
| MS.gene053894 | MS.gene54530 | 0.805095 | 1.58E-49 | -1.69E-46 |
| MS.gene053894 | MS.gene59506 | 0.807826 | 4.18E-50 | -1.69E-46 |
| MS.gene053894 | MS.gene59676 | 0.907344 | 5.61E-81 | -1.69E-46 |
| MS.gene053894 | MS.gene61133 | 0.820854 | 5.51E-53 | -1.69E-46 |
| MS.gene053894 | MS.gene62682 | 0.820877 | 5.44E-53 | -1.69E-46 |
| MS.gene053894 | MS.gene64101 | 0.817427 | 3.32E-52 | -1.69E-46 |
| MS.gene053894 | MS.gene64249 | 0.832699 | 8.14E-56 | -1.69E-46 |
| MS.gene053894 | MS.gene64807 | 0.805573 | 1.25E-49 | -1.69E-46 |
| MS.gene053894 | MS.gene72268 | 0.823702 | 1.20E-53 | -1.69E-46 |
| MS.gene053894 | MS.gene76034 | 0.800903 | 1.16E-48 | -1.69E-46 |
| MS.gene053894 | MS.gene82929 | 0.802078 | 6.65E-49 | -1.69E-46 |
| MS.gene053894 | MS.gene83529 | 0.828644 | 8.02E-55 | -1.69E-46 |
| MS.gene053894 | MS.gene84847 | 0.802243 | 6.15E-49 | -1.69E-46 |
| MS.gene053894 | MS.gene87104 | 0.803462 | 3.45E-49 | -1.69E-46 |
| MS.gene053894 | MS.gene87708 | 0.808225 | 3.44E-50 | -1.69E-46 |
| MS.gene053894 | MS.gene88243 | 0.823256 | 1.53E-53 | -1.69E-46 |
| MS.gene053894 | MS.gene90370 | 0.82621 | 3.07E-54 | -1.69E-46 |
| MS.gene053894 | MS.gene93654 | 0.826271 | 2.97E-54 | -1.69E-46 |
| MS.gene053894 | MS.gene93656 | 0.837839 | 4.10E-57 | -1.69E-46 |
| MS.gene053894 | MS.gene96526 | 0.921301 | 4.26E-88 | -1.69E-46 |
| MS.gene053894 | MS.gene97238 | 0.807283 | 5.45E-50 | -1.69E-46 |
| MS.gene053894 | MS.gene98091 | 0.804001 | 2.66E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053894.t1 | MTR_5g054780 | 98.566 | 488 | 7 | 0 | 3 | 490 | 4 | 491 | 0.0 | 984 |
| MS.gene053894.t1 | MTR_1g111330 | 82.937 | 463 | 76 | 1 | 28 | 490 | 35 | 494 | 0.0 | 748 |
| MS.gene053894.t1 | MTR_1g111330 | 82.965 | 317 | 54 | 0 | 28 | 344 | 35 | 351 | 3.08e-179 | 506 |
| MS.gene053894.t1 | MTR_4g108910 | 69.388 | 147 | 29 | 2 | 344 | 490 | 2 | 132 | 2.29e-60 | 194 |
| MS.gene053894.t1 | MTR_3g033520 | 28.571 | 308 | 182 | 7 | 149 | 444 | 242 | 523 | 7.21e-30 | 123 |
| MS.gene053894.t1 | MTR_3g033520 | 28.571 | 308 | 182 | 7 | 149 | 444 | 261 | 542 | 7.61e-30 | 123 |
| MS.gene053894.t1 | MTR_7g086710 | 25.551 | 454 | 295 | 11 | 24 | 470 | 32 | 449 | 1.63e-23 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053894.t1 | AT1G25500 | 73.895 | 475 | 118 | 3 | 7 | 478 | 15 | 486 | 0.0 | 677 |
| MS.gene053894.t1 | AT1G25500 | 78.398 | 412 | 88 | 1 | 68 | 478 | 17 | 428 | 0.0 | 624 |
| MS.gene053894.t1 | AT1G25500 | 80.858 | 303 | 57 | 1 | 120 | 421 | 1 | 303 | 6.44e-171 | 483 |
| MS.gene053894.t1 | AT5G13760 | 28.041 | 296 | 199 | 3 | 149 | 444 | 252 | 533 | 7.80e-31 | 126 |
| MS.gene053894.t1 | AT3G04440 | 25.622 | 402 | 274 | 10 | 91 | 484 | 71 | 455 | 4.34e-19 | 90.1 |
| MS.gene053894.t1 | AT3G03700 | 25.622 | 402 | 274 | 10 | 91 | 484 | 94 | 478 | 4.44e-19 | 90.1 |
| MS.gene053894.t1 | AT3G04440 | 25.622 | 402 | 274 | 10 | 91 | 484 | 94 | 478 | 4.73e-19 | 90.1 |
Find 120 sgRNAs with CRISPR-Local
Find 307 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCTCTGTAAGCTTATTT+TGG | 0.132127 | 5.3:+43436745 | MS.gene053894:CDS |
| GAGAGTCGCATATGCGTTTA+TGG | 0.163908 | 5.3:+43436501 | MS.gene053894:CDS |
| CCTTTGAAGATTGGTGTTTA+TGG | 0.194371 | 5.3:+43437320 | MS.gene053894:intron |
| TTATGGCTGTCATGCTCTTA+TGG | 0.229988 | 5.3:+43436518 | MS.gene053894:CDS |
| TTCAGGTGCTGTGCTGTTAA+TGG | 0.262803 | 5.3:+43437424 | MS.gene053894:CDS |
| TGCAGAACCAACATTGTAAA+TGG | 0.266173 | 5.3:-43436439 | None:intergenic |
| AGTTATCAGCCCACCTAAAA+TGG | 0.267123 | 5.3:-43437450 | None:intergenic |
| TTGTGATTCTTGGCGTTAAC+AGG | 0.271164 | 5.3:+43434551 | MS.gene053894:CDS |
| CTGGAACTTGCTCTGGTGTT+TGG | 0.293203 | 5.3:+43437471 | MS.gene053894:CDS |
| GGCGTTGGCACGATGTATTC+TGG | 0.294547 | 5.3:+43434485 | MS.gene053894:CDS |
| CTGGTTTGACAGAGGATTAC+TGG | 0.297174 | 5.3:+43434635 | MS.gene053894:CDS |
| TCCCATGTCTGAATCAATAA+TGG | 0.311107 | 5.3:-43438002 | None:intergenic |
| CATTATTCACAGCTGCTATT+AGG | 0.318508 | 5.3:+43436931 | MS.gene053894:CDS |
| TGGAACTTGCTCTGGTGTTT+GGG | 0.323340 | 5.3:+43437472 | MS.gene053894:CDS |
| TTTGATTCATTTCAGATAAG+AGG | 0.330190 | 5.3:+43437051 | MS.gene053894:intron |
| CAAGATAAGTGGTAAGAATA+TGG | 0.340491 | 5.3:-43434756 | None:intergenic |
| TATGCTCATGGGCATGATAT+TGG | 0.343150 | 5.3:+43437541 | MS.gene053894:CDS |
| TATGCTGTCGCTGGCGGCGT+TGG | 0.349719 | 5.3:+43434664 | MS.gene053894:CDS |
| ATGCTGTCGCTGGCGGCGTT+GGG | 0.354756 | 5.3:+43434665 | MS.gene053894:CDS |
| TGGATGGCATTGTGGTCATT+TGG | 0.361862 | 5.3:+43436538 | MS.gene053894:CDS |
| TTCCGCATAACAGATATATA+TGG | 0.362458 | 5.3:-43437976 | None:intergenic |
| GTGCTTCAACTCCCGTTGAT+TGG | 0.366711 | 5.3:-43437385 | None:intergenic |
| TATGCTTTAACAACATCTTT+TGG | 0.373372 | 5.3:+43436891 | MS.gene053894:CDS |
| GGCGGCGTTGGGACTGCTCT+TGG | 0.380288 | 5.3:+43434676 | MS.gene053894:CDS |
| TACAATGTTGGTTCTGCAAA+AGG | 0.380351 | 5.3:+43436444 | MS.gene053894:CDS |
| GGTGCAATGTTTCGGAAATC+TGG | 0.390267 | 5.3:-43438040 | None:intergenic |
| ATGGAGTTGGTTGTTGCTGT+TGG | 0.393555 | 5.3:+43434699 | MS.gene053894:CDS |
| TCAGGTGCTGTGCTGTTAAT+GGG | 0.404479 | 5.3:+43437425 | MS.gene053894:CDS |
| ACAGTACATGTCATAGTGTC+TGG | 0.405736 | 5.3:+43436789 | MS.gene053894:CDS |
| AAGTCGCTGGTGCAATGTTT+CGG | 0.405815 | 5.3:-43438048 | None:intergenic |
| CAAAACCCACGCCAATCAAC+TGG | 0.407766 | 5.3:-43434525 | None:intergenic |
| TTGTGGTCATTTGGAGCTGC+TGG | 0.409399 | 5.3:+43436547 | MS.gene053894:CDS |
| CTTGCTCTGGTGTTTGGGCA+TGG | 0.410854 | 5.3:+43437477 | MS.gene053894:CDS |
| TTGCGAGGCTGCATCAGTTC+CGG | 0.412997 | 5.3:+43436842 | MS.gene053894:CDS |
| CTATTTGTGATCCAGTTGAT+TGG | 0.417906 | 5.3:+43434514 | MS.gene053894:CDS |
| ACCGTTCTGCAAGAGATGCC+TGG | 0.432100 | 5.3:+43437354 | MS.gene053894:CDS |
| TAAGTACACGTACCGGTTCA+TGG | 0.432396 | 5.3:+43434603 | MS.gene053894:CDS |
| CTGATAACTGGAACTTGCTC+TGG | 0.440852 | 5.3:+43437464 | MS.gene053894:CDS |
| GGACTGCTCTTGGATGGAGT+TGG | 0.442052 | 5.3:+43434686 | MS.gene053894:CDS |
| TACCTGATTGTTGGTGGCAG+TGG | 0.442191 | 5.3:-43433771 | None:intergenic |
| TGGAGTTGGTTGTTGCTGTT+GGG | 0.445429 | 5.3:+43434700 | MS.gene053894:CDS |
| AGAGGAATCCGGTCAAAGAT+AGG | 0.447023 | 5.3:+43437069 | MS.gene053894:CDS |
| CAGACTTCCATTTACAATGT+TGG | 0.448036 | 5.3:+43436432 | MS.gene053894:intron |
| ATACTGTAAAGATTTCATTA+TGG | 0.449302 | 5.3:-43436871 | None:intergenic |
| ATCTTGTGGAGACTCTTGTC+AGG | 0.452670 | 5.3:+43437133 | MS.gene053894:CDS |
| CATTCTTGCCTATCTTTGAC+CGG | 0.452929 | 5.3:-43437077 | None:intergenic |
| GGACAGACACCTTCATCATC+TGG | 0.455412 | 5.3:-43434735 | None:intergenic |
| ACAATATGCAGGGAATGTAT+AGG | 0.458422 | 5.3:+43434413 | MS.gene053894:intron |
| GGTTGGAGCGGCAATGGTTG+TGG | 0.459158 | 5.3:+43437935 | MS.gene053894:intron |
| GTGTTTGGGCATGGATGAAA+TGG | 0.463121 | 5.3:+43437486 | MS.gene053894:CDS |
| CTTGTGGCGTATGATTGTTC+AGG | 0.468254 | 5.3:+43437407 | MS.gene053894:CDS |
| CCCATGTCTGAATCAATAAT+GGG | 0.471583 | 5.3:-43438001 | None:intergenic |
| GCGTTGGGACTGCTCTTGGA+TGG | 0.476999 | 5.3:+43434680 | MS.gene053894:CDS |
| TTCCACTGCCACCAACAATC+AGG | 0.481194 | 5.3:+43433769 | MS.gene053894:CDS |
| ATATTATATCTGTCATAGAT+AGG | 0.482146 | 5.3:+43434863 | MS.gene053894:CDS |
| CTGATTCGTGTTAGTATCCA+TGG | 0.482289 | 5.3:+43436816 | MS.gene053894:CDS |
| GATTTCATTATGGAGTTAGC+CGG | 0.484194 | 5.3:-43436861 | None:intergenic |
| TGGGAGTTATTCCAATCAAC+GGG | 0.488654 | 5.3:+43437374 | MS.gene053894:CDS |
| CATTTCAGATAAGAGGAATC+CGG | 0.489370 | 5.3:+43437058 | MS.gene053894:intron |
| AGCTCCTATGTTGAAGTCGC+TGG | 0.491841 | 5.3:-43438061 | None:intergenic |
| TGCTATTAGGACACTGCGAT+GGG | 0.492171 | 5.3:+43436944 | MS.gene053894:CDS |
| TGGATCTACATCTATGCTCA+TGG | 0.499343 | 5.3:+43437529 | MS.gene053894:CDS |
| AACATAGGAGCTCGCGTGCA+AGG | 0.501996 | 5.3:+43438072 | MS.gene053894:CDS |
| CAGCCTCATTCTCCATGAAC+CGG | 0.504266 | 5.3:-43434615 | None:intergenic |
| TGGCCACTCTATGCTGTCGC+TGG | 0.505383 | 5.3:+43434655 | MS.gene053894:CDS |
| GGCTGTCATGCTCTTATGGA+TGG | 0.510990 | 5.3:+43436522 | MS.gene053894:CDS |
| GAGTCTCCACAAGATGGAAA+AGG | 0.511964 | 5.3:-43437125 | None:intergenic |
| CAGGGAATGTATAGGAAAAG+TGG | 0.517214 | 5.3:+43434421 | MS.gene053894:intron |
| CGGTTCATGGAGAATGAGGC+TGG | 0.519033 | 5.3:+43434616 | MS.gene053894:CDS |
| GCATGGGCGACGGCGGACGC+TGG | 0.520916 | 5.3:+43436584 | MS.gene053894:CDS |
| TCTGCAAAAGGCTGTTAAGA+TGG | 0.525636 | 5.3:+43436456 | MS.gene053894:CDS |
| CCGTTCTGCAAGAGATGCCT+GGG | 0.531018 | 5.3:+43437355 | MS.gene053894:CDS |
| AAAAGGCTGTTAAGATGGTA+TGG | 0.531876 | 5.3:+43436461 | MS.gene053894:CDS |
| TATGCGACTCTCATAACCTC+TGG | 0.532254 | 5.3:-43436490 | None:intergenic |
| CGTTGATTGGAATAACTCCC+AGG | 0.536301 | 5.3:-43437372 | None:intergenic |
| CATCAGCGAAGTGGTGAACA+TGG | 0.538775 | 5.3:+43434453 | MS.gene053894:CDS |
| TACCATCATGGATACCATCA+TGG | 0.543254 | 5.3:+43433742 | None:intergenic |
| CTGCTATTAGGACACTGCGA+TGG | 0.551628 | 5.3:+43436943 | MS.gene053894:CDS |
| ACTGATCACAGCAAGATAAG+TGG | 0.552209 | 5.3:-43434767 | None:intergenic |
| TGGGCGACGGCGGACGCTGG+TGG | 0.554770 | 5.3:+43436587 | MS.gene053894:CDS |
| TGCTCTTATGGATGGCATTG+TGG | 0.555214 | 5.3:+43436530 | MS.gene053894:CDS |
| TGCACCAGCGACTTCAACAT+AGG | 0.555754 | 5.3:+43438057 | MS.gene053894:CDS |
| TTGAAGTACCTGATTGTTGG+TGG | 0.559667 | 5.3:-43433777 | None:intergenic |
| TGACAAGAGTCTCCACAAGA+TGG | 0.562607 | 5.3:-43437131 | None:intergenic |
| CCCATTATTGATTCAGACAT+GGG | 0.565343 | 5.3:+43438001 | MS.gene053894:CDS |
| TACGAGAATCAAGGTGATCG+TGG | 0.569177 | 5.3:-43438106 | None:intergenic |
| GTGATCCAGTTGATTGGCGT+GGG | 0.570702 | 5.3:+43434520 | MS.gene053894:CDS |
| GCGCGCAATCCAGATGATGA+AGG | 0.572957 | 5.3:+43434726 | MS.gene053894:CDS |
| AACGGGAGTTGAAGCACTTG+TGG | 0.573101 | 5.3:+43437391 | MS.gene053894:CDS |
| CAGTACATGTCATAGTGTCT+GGG | 0.574385 | 5.3:+43436790 | MS.gene053894:CDS |
| TAACAAGTATGCGTATGTCC+AGG | 0.584550 | 5.3:+43437161 | MS.gene053894:CDS |
| CTGGGAGTTATTCCAATCAA+CGG | 0.586139 | 5.3:+43437373 | MS.gene053894:CDS |
| GGATCTACATCTATGCTCAT+GGG | 0.586213 | 5.3:+43437530 | MS.gene053894:CDS |
| ACATAGGAGCTCGCGTGCAA+GGG | 0.586817 | 5.3:+43438073 | MS.gene053894:CDS |
| CGGACGCTGGTGGCTTCTTG+TGG | 0.590851 | 5.3:+43436597 | MS.gene053894:CDS |
| GTAGCTTCAAGCATGGGCGA+CGG | 0.591048 | 5.3:+43436574 | MS.gene053894:CDS |
| TGGTGTTGTAGCTTCAAGCA+TGG | 0.591952 | 5.3:+43436567 | MS.gene053894:CDS |
| ACCCATTATTGATTCAGACA+TGG | 0.593448 | 5.3:+43438000 | MS.gene053894:CDS |
| TGTGATCCAGTTGATTGGCG+TGG | 0.597398 | 5.3:+43434519 | MS.gene053894:CDS |
| CCCAGGCATCTCTTGCAGAA+CGG | 0.598895 | 5.3:-43437355 | None:intergenic |
| GTACCGGTTCATGGAGAATG+AGG | 0.606474 | 5.3:+43434612 | MS.gene053894:CDS |
| CCACTCTATGCTGTCGCTGG+CGG | 0.608339 | 5.3:+43434658 | MS.gene053894:CDS |
| TGGAGCGGCAATGGTTGTGG+TGG | 0.610073 | 5.3:+43437938 | MS.gene053894:CDS |
| TTTCTGGTATACGAGAATCA+AGG | 0.610752 | 5.3:-43438115 | None:intergenic |
| ATCCATATATATCTGTTATG+CGG | 0.615901 | 5.3:+43437974 | MS.gene053894:CDS |
| GGTGTTGTAGCTTCAAGCAT+GGG | 0.620790 | 5.3:+43436568 | MS.gene053894:CDS |
| ACATTGATAAGTACACGTAC+CGG | 0.624419 | 5.3:+43434596 | MS.gene053894:CDS |
| ATGCAGCCTCGCAACCACCA+TGG | 0.625809 | 5.3:-43436833 | None:intergenic |
| ACGAGAATCAAGGTGATCGT+GGG | 0.626896 | 5.3:-43438105 | None:intergenic |
| GCTTCAAGCATGGGCGACGG+CGG | 0.627340 | 5.3:+43436577 | MS.gene053894:CDS |
| GAATGAGGCTGGTTTGACAG+AGG | 0.635745 | 5.3:+43434627 | MS.gene053894:CDS |
| CCGCCAGCGACAGCATAGAG+TGG | 0.636241 | 5.3:-43434658 | None:intergenic |
| CAACAACAACATCAGCGAAG+TGG | 0.651559 | 5.3:+43434444 | MS.gene053894:CDS |
| TATTAGGACACTGCGATGGG+AGG | 0.654899 | 5.3:+43436947 | MS.gene053894:CDS |
| TAGTATCCATGGTGGTTGCG+AGG | 0.664174 | 5.3:+43436827 | MS.gene053894:CDS |
| GATGGTATGGAATCTTCCAG+AGG | 0.689240 | 5.3:+43436474 | MS.gene053894:CDS |
| GGCAGTGGAAGAATCCATGA+TGG | 0.691125 | 5.3:-43433756 | None:intergenic |
| TGTTAACGCCAAGAATCACA+AGG | 0.715028 | 5.3:-43434549 | None:intergenic |
| TCCAAAATAAGCTTACAGAG+AGG | 0.747140 | 5.3:-43436746 | None:intergenic |
| ATTCGTGTTAGTATCCATGG+TGG | 0.768648 | 5.3:+43436819 | MS.gene053894:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAAAATCGTTTAATTTT+TGG | + | chr5.3:43435984-43436003 | MS.gene053894:intron | 10.0% |
| !!! | TTTGCTTTATATAATTATTT+TGG | + | chr5.3:43436366-43436385 | MS.gene053894:intron | 10.0% |
| !! | AATTATATAAAGCAAATAGA+AGG | - | chr5.3:43436362-43436381 | None:intergenic | 15.0% |
| !! | ATTATATAAAGCAAATAGAA+GGG | - | chr5.3:43436361-43436380 | None:intergenic | 15.0% |
| !! | ATTATTCTACAATACATATT+TGG | + | chr5.3:43436059-43436078 | MS.gene053894:intron | 15.0% |
| !! | GAAAAGATAAAAAAAATTGT+GGG | - | chr5.3:43433813-43433832 | None:intergenic | 15.0% |
| !! | TAAATATTTAATCTAATGAG+AGG | + | chr5.3:43435438-43435457 | MS.gene053894:intron | 15.0% |
| !! | TAATTGAATTATTGTATGTT+TGG | - | chr5.3:43434147-43434166 | None:intergenic | 15.0% |
| !! | TCAAAAGTAATAAAAAATCA+AGG | - | chr5.3:43437581-43437600 | None:intergenic | 15.0% |
| !! | TCAAATAAATCAATTCAAAT+AGG | + | chr5.3:43435275-43435294 | MS.gene053894:intron | 15.0% |
| !! | TGAAAAGATAAAAAAAATTG+TGG | - | chr5.3:43433814-43433833 | None:intergenic | 15.0% |
| !! | TTTAAGTAAACAAATTAAAC+AGG | - | chr5.3:43435519-43435538 | None:intergenic | 15.0% |
| !!! | AATGTTTTTGATAAAATTAG+CGG | - | chr5.3:43434274-43434293 | None:intergenic | 15.0% |
| !!! | AATTTTTTTTCCAAGTAAAA+TGG | - | chr5.3:43434196-43434215 | None:intergenic | 15.0% |
| !!! | TAAATTTTAAAGAACAAGAA+AGG | - | chr5.3:43435316-43435335 | None:intergenic | 15.0% |
| !!! | TATGTATTGTAGAATAATTT+TGG | - | chr5.3:43436057-43436076 | None:intergenic | 15.0% |
| !! | AAAGTAATAAAAAATCAAGG+AGG | - | chr5.3:43437578-43437597 | None:intergenic | 20.0% |
| !! | AAATTAAACAGGTTAAATCA+AGG | - | chr5.3:43435508-43435527 | None:intergenic | 20.0% |
| !! | AATTAAATGGAAATAGCTTA+TGG | + | chr5.3:43435184-43435203 | MS.gene053894:intron | 20.0% |
| !! | ATACTGTAAAGATTTCATTA+TGG | - | chr5.3:43436874-43436893 | None:intergenic | 20.0% |
| !! | ATATTATATCTGTCATAGAT+AGG | + | chr5.3:43434863-43434882 | MS.gene053894:CDS | 20.0% |
| !! | CAATTACCTAGATATAAATT+AGG | + | chr5.3:43435769-43435788 | MS.gene053894:intron | 20.0% |
| !! | CATAGCTTATAGAAATTAAA+TGG | + | chr5.3:43435171-43435190 | MS.gene053894:intron | 20.0% |
| !! | TAAAAAAATGTTAAGCTACA+AGG | - | chr5.3:43434170-43434189 | None:intergenic | 20.0% |
| !!! | AATAACTTTAGGTTTAGTTT+GGG | + | chr5.3:43435852-43435871 | MS.gene053894:intron | 20.0% |
| !!! | ACAAGTAAAATCAATTTTTG+AGG | + | chr5.3:43434074-43434093 | MS.gene053894:intron | 20.0% |
| !!! | TAATAACTTTAGGTTTAGTT+TGG | + | chr5.3:43435851-43435870 | MS.gene053894:intron | 20.0% |
| !!! | TACATTTCTAAAATCAATCT+TGG | + | chr5.3:43434104-43434123 | MS.gene053894:intron | 20.0% |
| !!! | TATTGTAGAATAATTTTGGA+GGG | - | chr5.3:43436053-43436072 | None:intergenic | 20.0% |
| !!! | TGATTTTACTTGTTTTTTGT+GGG | - | chr5.3:43434067-43434086 | None:intergenic | 20.0% |
| !!! | TGATTTTAGAAATGTAGAAT+TGG | - | chr5.3:43434100-43434119 | None:intergenic | 20.0% |
| !!! | TTGATGTTATTTTAAGCATT+TGG | + | chr5.3:43434955-43434974 | MS.gene053894:intron | 20.0% |
| !!! | TTGATTTTACTTGTTTTTTG+TGG | - | chr5.3:43434068-43434087 | None:intergenic | 20.0% |
| !!! | TTTTAAATGAAACTTCTTAC+AGG | - | chr5.3:43435812-43435831 | None:intergenic | 20.0% |
| !!! | TTTTTTATCTCCATTTTACT+TGG | + | chr5.3:43434183-43434202 | MS.gene053894:intron | 20.0% |
| ! | AAAATATCACAGTTTGTCTA+TGG | + | chr5.3:43435828-43435847 | MS.gene053894:intron | 25.0% |
| ! | AAAGAGAATAAATCAAATGC+AGG | + | chr5.3:43437708-43437727 | MS.gene053894:intron | 25.0% |
| ! | AACTTGTGAAAGATCATATA+AGG | + | chr5.3:43435142-43435161 | MS.gene053894:intron | 25.0% |
| ! | AAGAGAATAAATCAAATGCA+GGG | + | chr5.3:43437709-43437728 | MS.gene053894:intron | 25.0% |
| ! | AATATTACAAGAGAACTACT+AGG | + | chr5.3:43437766-43437785 | MS.gene053894:intron | 25.0% |
| ! | AGAAAACAACATCAAATCAA+AGG | - | chr5.3:43434926-43434945 | None:intergenic | 25.0% |
| ! | AGTTCTCTTGTAATATTTCT+AGG | - | chr5.3:43437763-43437782 | None:intergenic | 25.0% |
| ! | ATCCATATATATCTGTTATG+CGG | + | chr5.3:43437974-43437993 | MS.gene053894:CDS | 25.0% |
| ! | ATGTTGCGAATATTCTTAAA+AGG | - | chr5.3:43436242-43436261 | None:intergenic | 25.0% |
| ! | CATAAAATGTAGTCTAAGAA+AGG | - | chr5.3:43434900-43434919 | None:intergenic | 25.0% |
| ! | GAAATTGAAAGGATTGTATT+AGG | - | chr5.3:43435627-43435646 | None:intergenic | 25.0% |
| ! | TATCCAACTCATTAATCTTT+AGG | - | chr5.3:43437797-43437816 | None:intergenic | 25.0% |
| ! | TTGTCTATGGTAATAACTTT+AGG | + | chr5.3:43435841-43435860 | MS.gene053894:intron | 25.0% |
| ! | TTTGATTCATTTCAGATAAG+AGG | + | chr5.3:43437051-43437070 | MS.gene053894:intron | 25.0% |
| !! | AGTTGAATTTTTATAATGCC+TGG | + | chr5.3:43435721-43435740 | MS.gene053894:intron | 25.0% |
| !! | CATGGATACTTTCATTTTAT+TGG | + | chr5.3:43436259-43436278 | MS.gene053894:intron | 25.0% |
| !! | GTATTGTAGAATAATTTTGG+AGG | - | chr5.3:43436054-43436073 | None:intergenic | 25.0% |
| !! | TAACAATAGAGAGAGATTTT+GGG | + | chr5.3:43437604-43437623 | MS.gene053894:intron | 25.0% |
| !! | TATGCTTTAACAACATCTTT+TGG | + | chr5.3:43436891-43436910 | MS.gene053894:CDS | 25.0% |
| !! | TTTGGAGTATTATAACAACA+TGG | + | chr5.3:43436002-43436021 | MS.gene053894:intron | 25.0% |
| !!! | ACTTTCATTTTATTGGTGAT+CGG | + | chr5.3:43436266-43436285 | MS.gene053894:intron | 25.0% |
| !!! | TTGAACTTGTGTTCTTTTTT+AGG | + | chr5.3:43433846-43433865 | MS.gene053894:intron | 25.0% |
| !!! | TTTTAAGAATATTCGCAACA+TGG | + | chr5.3:43436241-43436260 | MS.gene053894:intron | 25.0% |
| AAATCTGGTTGAAAAACTCA+TGG | - | chr5.3:43438028-43438047 | None:intergenic | 30.0% | |
| AAGAAAAATAAACTCCCCAA+AGG | + | chr5.3:43436115-43436134 | MS.gene053894:intron | 30.0% | |
| AATACAAAATCCCCCTAATT+TGG | - | chr5.3:43436092-43436111 | None:intergenic | 30.0% | |
| AATTGCTCTATCAAATAAGG+TGG | - | chr5.3:43435935-43435954 | None:intergenic | 30.0% | |
| AATTTCATGTTCGCACAAAA+GGG | - | chr5.3:43435362-43435381 | None:intergenic | 30.0% | |
| ACACGTCCTAATTTATATCT+AGG | - | chr5.3:43435778-43435797 | None:intergenic | 30.0% | |
| ACATGTTCTCATAACTCTTA+AGG | - | chr5.3:43435002-43435021 | None:intergenic | 30.0% | |
| AGACCTAAAGATTAATGAGT+TGG | + | chr5.3:43437791-43437810 | MS.gene053894:intron | 30.0% | |
| ATTGAAAGGATTGTATTAGG+AGG | - | chr5.3:43435624-43435643 | None:intergenic | 30.0% | |
| CAAAATCTCTCTCTATTGTT+AGG | - | chr5.3:43437605-43437624 | None:intergenic | 30.0% | |
| CAAGATAAGTGGTAAGAATA+TGG | - | chr5.3:43434759-43434778 | None:intergenic | 30.0% | |
| CATGAGAAATGAATACGTAA+AGG | - | chr5.3:43437018-43437037 | None:intergenic | 30.0% | |
| GCATATTGTCAAAAATGCTA+AGG | - | chr5.3:43434402-43434421 | None:intergenic | 30.0% | |
| GGATATAGAATAGGATAAGT+AGG | - | chr5.3:43435603-43435622 | None:intergenic | 30.0% | |
| GTATTAGGAGGATATAGAAT+AGG | - | chr5.3:43435612-43435631 | None:intergenic | 30.0% | |
| TATAGAATAGGATAAGTAGG+TGG | - | chr5.3:43435600-43435619 | None:intergenic | 30.0% | |
| TCTTTCACAAGTTATGCTTA+TGG | - | chr5.3:43435135-43435154 | None:intergenic | 30.0% | |
| TGATAAGCTAAGTGTATGAT+TGG | + | chr5.3:43433939-43433958 | MS.gene053894:intron | 30.0% | |
| TTAGCTTATGCTTATCTCAT+TGG | + | chr5.3:43436696-43436715 | MS.gene053894:intron | 30.0% | |
| TTCCGCATAACAGATATATA+TGG | - | chr5.3:43437979-43437998 | None:intergenic | 30.0% | |
| ! | AACAATAGAGAGAGATTTTG+GGG | + | chr5.3:43437605-43437624 | MS.gene053894:intron | 30.0% |
| ! | AGCATTTTTGACAATATGCA+GGG | + | chr5.3:43434403-43434422 | MS.gene053894:intron | 30.0% |
| ! | AGTGATAGAGCTTTTATGAT+TGG | + | chr5.3:43437509-43437528 | MS.gene053894:CDS | 30.0% |
| ! | CCTTATTTGATAGAGCAATT+CGG | + | chr5.3:43435935-43435954 | MS.gene053894:intron | 30.0% |
| ! | CTAACAATAGAGAGAGATTT+TGG | + | chr5.3:43437603-43437622 | MS.gene053894:intron | 30.0% |
| ! | TAGCATTTTTGACAATATGC+AGG | + | chr5.3:43434402-43434421 | MS.gene053894:intron | 30.0% |
| ! | TGGATTATGACTCTCATTTT+CGG | + | chr5.3:43435741-43435760 | MS.gene053894:intron | 30.0% |
| !! | AGATTCTCTCTGAAATTGAA+AGG | - | chr5.3:43435638-43435657 | None:intergenic | 30.0% |
| !! | GTCATTAAGTTGATTTCTGT+TGG | + | chr5.3:43436388-43436407 | MS.gene053894:intron | 30.0% |
| !!! | TGACATGTGAATTTTTAGGT+TGG | + | chr5.3:43437918-43437937 | MS.gene053894:intron | 30.0% |
| AAAAGGCTGTTAAGATGGTA+TGG | + | chr5.3:43436461-43436480 | MS.gene053894:CDS | 35.0% | |
| AAGCAAATAGAAGGGAATGA+AGG | - | chr5.3:43436353-43436372 | None:intergenic | 35.0% | |
| ACAATATGCAGGGAATGTAT+AGG | + | chr5.3:43434413-43434432 | MS.gene053894:intron | 35.0% | |
| ACAGGTTCAAGAAAAAGAAC+AGG | + | chr5.3:43434569-43434588 | MS.gene053894:CDS | 35.0% | |
| ACATTGATAAGTACACGTAC+CGG | + | chr5.3:43434596-43434615 | MS.gene053894:CDS | 35.0% | |
| ACCTATTGTAGAAAAGATGG+TGG | + | chr5.3:43437632-43437651 | MS.gene053894:intron | 35.0% | |
| AGCACCTATTGTAGAAAAGA+TGG | + | chr5.3:43437629-43437648 | MS.gene053894:intron | 35.0% | |
| AGGTGGAGCTCTTAAAATAT+TGG | - | chr5.3:43435583-43435602 | None:intergenic | 35.0% | |
| ATGTTACCCACTACTAAGTA+GGG | - | chr5.3:43437862-43437881 | None:intergenic | 35.0% | |
| CAAACGTAATGTTCATCTTC+AGG | + | chr5.3:43435547-43435566 | MS.gene053894:intron | 35.0% | |
| CAACATTGTAAATGGAAGTC+TGG | - | chr5.3:43436434-43436453 | None:intergenic | 35.0% | |
| CAATTTCATGTTCGCACAAA+AGG | - | chr5.3:43435363-43435382 | None:intergenic | 35.0% | |
| CAGACTTCCATTTACAATGT+TGG | + | chr5.3:43436432-43436451 | MS.gene053894:intron | 35.0% | |
| CATTATTCACAGCTGCTATT+AGG | + | chr5.3:43436931-43436950 | MS.gene053894:CDS | 35.0% | |
| CATTTCAGATAAGAGGAATC+CGG | + | chr5.3:43437058-43437077 | MS.gene053894:intron | 35.0% | |
| CCATAAACACCAATCTTCAA+AGG | - | chr5.3:43437323-43437342 | None:intergenic | 35.0% | |
| CCCATGTCTGAATCAATAAT+GGG | - | chr5.3:43438004-43438023 | None:intergenic | 35.0% | |
| CCGAATTGCTCTATCAAATA+AGG | - | chr5.3:43435938-43435957 | None:intergenic | 35.0% | |
| CTATTTGTGATCCAGTTGAT+TGG | + | chr5.3:43434514-43434533 | MS.gene053894:CDS | 35.0% | |
| GAAAATGAGAGTCATAATCC+AGG | - | chr5.3:43435742-43435761 | None:intergenic | 35.0% | |
| GATTTCATTATGGAGTTAGC+CGG | - | chr5.3:43436864-43436883 | None:intergenic | 35.0% | |
| TACCAAACGAGCTCAAAATA+TGG | - | chr5.3:43433887-43433906 | None:intergenic | 35.0% | |
| TATGTTACCCACTACTAAGT+AGG | - | chr5.3:43437863-43437882 | None:intergenic | 35.0% | |
| TCCAAAATAAGCTTACAGAG+AGG | - | chr5.3:43436749-43436768 | None:intergenic | 35.0% | |
| TCCCATGTCTGAATCAATAA+TGG | - | chr5.3:43438005-43438024 | None:intergenic | 35.0% | |
| TGATTGTTGAGATGCACAAT+GGG | - | chr5.3:43437190-43437209 | None:intergenic | 35.0% | |
| TGCAGAACCAACATTGTAAA+TGG | - | chr5.3:43436442-43436461 | None:intergenic | 35.0% | |
| TTCATTCTGTCTGTTCATGT+TGG | + | chr5.3:43436640-43436659 | MS.gene053894:intron | 35.0% | |
| TTCTATGCATCTCCATGAAA+CGG | - | chr5.3:43436208-43436227 | None:intergenic | 35.0% | |
| TTGATTGTTGAGATGCACAA+TGG | - | chr5.3:43437191-43437210 | None:intergenic | 35.0% | |
| ! | ATGTTTGGTTTCACTTCTAG+AGG | - | chr5.3:43434132-43434151 | None:intergenic | 35.0% |
| ! | CCTTTGAAGATTGGTGTTTA+TGG | + | chr5.3:43437320-43437339 | MS.gene053894:intron | 35.0% |
| ! | CTGTTAATGGGAACCATTTT+AGG | + | chr5.3:43437437-43437456 | MS.gene053894:CDS | 35.0% |
| ! | GATCAGTGTTTTGTGTTTCT+GGG | + | chr5.3:43434783-43434802 | MS.gene053894:CDS | 35.0% |
| ! | GCTAGCTTATAAGCTTATAG+TGG | - | chr5.3:43434319-43434338 | None:intergenic | 35.0% |
| ! | GCTATTAGTTTACACTGTCT+TGG | + | chr5.3:43437252-43437271 | MS.gene053894:intron | 35.0% |
| ! | GGCATGACATGTGAATTTTT+AGG | + | chr5.3:43437914-43437933 | MS.gene053894:intron | 35.0% |
| ! | TCCACCATCTTTTCTACAAT+AGG | - | chr5.3:43437636-43437655 | None:intergenic | 35.0% |
| ! | TCCTCTCTGTAAGCTTATTT+TGG | + | chr5.3:43436745-43436764 | MS.gene053894:CDS | 35.0% |
| ! | TGATCAGTGTTTTGTGTTTC+TGG | + | chr5.3:43434782-43434801 | MS.gene053894:CDS | 35.0% |
| ! | TGATTTCCTTTTCCATCTTG+TGG | + | chr5.3:43437119-43437138 | MS.gene053894:CDS | 35.0% |
| ! | TGTTTGGTTTCACTTCTAGA+GGG | - | chr5.3:43434131-43434150 | None:intergenic | 35.0% |
| ! | TTAATGGGAACCATTTTAGG+TGG | + | chr5.3:43437440-43437459 | MS.gene053894:CDS | 35.0% |
| ! | TTGCTATTATGCATGTATGC+AGG | + | chr5.3:43436722-43436741 | MS.gene053894:intron | 35.0% |
| ! | TTTCTGGTATACGAGAATCA+AGG | - | chr5.3:43438118-43438137 | None:intergenic | 35.0% |
| !! | AAGTTGATTTCTGTTGGCTT+TGG | + | chr5.3:43436394-43436413 | MS.gene053894:intron | 35.0% |
| !! | ACCCATTATTGATTCAGACA+TGG | + | chr5.3:43438000-43438019 | MS.gene053894:CDS | 35.0% |
| !! | ATAGTGGATAAGCAAGTGAT+TGG | - | chr5.3:43434303-43434322 | None:intergenic | 35.0% |
| !! | CCCATTATTGATTCAGACAT+GGG | + | chr5.3:43438001-43438020 | MS.gene053894:CDS | 35.0% |
| !! | TAATGGGAACCATTTTAGGT+GGG | + | chr5.3:43437441-43437460 | MS.gene053894:CDS | 35.0% |
| !! | TACAATGTTGGTTCTGCAAA+AGG | + | chr5.3:43436444-43436463 | MS.gene053894:CDS | 35.0% |
| !! | TACCATATTTTGAGCTCGTT+TGG | + | chr5.3:43433882-43433901 | MS.gene053894:intron | 35.0% |
| !! | TCTTTTGGCAGCATTTGTTA+TGG | + | chr5.3:43436906-43436925 | MS.gene053894:CDS | 35.0% |
| !! | TTAGGTTTAGTTTGGGAGTT+TGG | + | chr5.3:43435859-43435878 | MS.gene053894:intron | 35.0% |
| !!! | GTTTTGAAGTACCTGATTGT+TGG | - | chr5.3:43433783-43433802 | None:intergenic | 35.0% |
| !!! | TACGTACTTTTGAGACTGTT+TGG | - | chr5.3:43435240-43435259 | None:intergenic | 35.0% |
| !!! | TCTGTAAGCTTATTTTGGAC+AGG | + | chr5.3:43436750-43436769 | MS.gene053894:CDS | 35.0% |
| !!! | TGTGAATTTTTAGGTTGGAG+CGG | + | chr5.3:43437923-43437942 | MS.gene053894:intron | 35.0% |
| ACAAAATCCCCCTAATTTGG+TGG | - | chr5.3:43436089-43436108 | None:intergenic | 40.0% | |
| ACACCAATCTTCAAAGGACA+TGG | - | chr5.3:43437317-43437336 | None:intergenic | 40.0% | |
| ACAGTACATGTCATAGTGTC+TGG | + | chr5.3:43436789-43436808 | MS.gene053894:CDS | 40.0% | |
| ACTGATCACAGCAAGATAAG+TGG | - | chr5.3:43434770-43434789 | None:intergenic | 40.0% | |
| AGTTATCAGCCCACCTAAAA+TGG | - | chr5.3:43437453-43437472 | None:intergenic | 40.0% | |
| ATTCGTGTTAGTATCCATGG+TGG | + | chr5.3:43436819-43436838 | MS.gene053894:CDS | 40.0% | |
| CAAAATCCCCCTAATTTGGT+GGG | - | chr5.3:43436088-43436107 | None:intergenic | 40.0% | |
| CACCAATCTTCAAAGGACAT+GGG | - | chr5.3:43437316-43437335 | None:intergenic | 40.0% | |
| CAGGGAATGTATAGGAAAAG+TGG | + | chr5.3:43434421-43434440 | MS.gene053894:intron | 40.0% | |
| CAGTACATGTCATAGTGTCT+GGG | + | chr5.3:43436790-43436809 | MS.gene053894:CDS | 40.0% | |
| CATTCTTGCCTATCTTTGAC+CGG | - | chr5.3:43437080-43437099 | None:intergenic | 40.0% | |
| CTGAATATGCATCCGAACAT+AGG | + | chr5.3:43437893-43437912 | MS.gene053894:intron | 40.0% | |
| CTGGGAGTTATTCCAATCAA+CGG | + | chr5.3:43437373-43437392 | MS.gene053894:CDS | 40.0% | |
| GGATCTACATCTATGCTCAT+GGG | + | chr5.3:43437530-43437549 | MS.gene053894:CDS | 40.0% | |
| TAACAAGTATGCGTATGTCC+AGG | + | chr5.3:43437161-43437180 | MS.gene053894:CDS | 40.0% | |
| TATGCTCATGGGCATGATAT+TGG | + | chr5.3:43437541-43437560 | MS.gene053894:CDS | 40.0% | |
| TCACATGTCATGCCTATGTT+CGG | - | chr5.3:43437908-43437927 | None:intergenic | 40.0% | |
| TCTGCAAAAGGCTGTTAAGA+TGG | + | chr5.3:43436456-43436475 | MS.gene053894:CDS | 40.0% | |
| TCTGTTCATGTTGGATTCGT+TGG | + | chr5.3:43436649-43436668 | MS.gene053894:intron | 40.0% | |
| TGGATCTACATCTATGCTCA+TGG | + | chr5.3:43437529-43437548 | MS.gene053894:CDS | 40.0% | |
| TGGGAGTTATTCCAATCAAC+GGG | + | chr5.3:43437374-43437393 | MS.gene053894:CDS | 40.0% | |
| TGGTGAACATGGAGCAAAAA+AGG | + | chr5.3:43434464-43434483 | MS.gene053894:CDS | 40.0% | |
| TGTTAACGCCAAGAATCACA+AGG | - | chr5.3:43434552-43434571 | None:intergenic | 40.0% | |
| TGTTACCCACTACTAAGTAG+GGG | - | chr5.3:43437861-43437880 | None:intergenic | 40.0% | |
| TTATGGCTGTCATGCTCTTA+TGG | + | chr5.3:43436518-43436537 | MS.gene053894:CDS | 40.0% | |
| TTGTGATTCTTGGCGTTAAC+AGG | + | chr5.3:43434551-43434570 | MS.gene053894:CDS | 40.0% | |
| ! | ATTTGGAGTCCCACCAAATT+AGG | + | chr5.3:43436076-43436095 | MS.gene053894:intron | 40.0% |
| ! | CTGATTCGTGTTAGTATCCA+TGG | + | chr5.3:43436816-43436835 | MS.gene053894:CDS | 40.0% |
| ! | GGATTCGTTGGTTACGTATA+CGG | + | chr5.3:43436661-43436680 | MS.gene053894:intron | 40.0% |
| ! | TGAGAGGTAGAGCTTTTAAG+AGG | + | chr5.3:43435454-43435473 | MS.gene053894:intron | 40.0% |
| ! | TTGAAGTACCTGATTGTTGG+TGG | - | chr5.3:43433780-43433799 | None:intergenic | 40.0% |
| ! | TTTGGAGTCCCACCAAATTA+GGG | + | chr5.3:43436077-43436096 | MS.gene053894:intron | 40.0% |
| !! | AAGATGGTGGAAACTCAACT+TGG | + | chr5.3:43437645-43437664 | MS.gene053894:intron | 40.0% |
| !! | AGATGGTGGAAACTCAACTT+GGG | + | chr5.3:43437646-43437665 | MS.gene053894:intron | 40.0% |
| !! | GGTTTTGTCCTTGTGATTCT+TGG | + | chr5.3:43434541-43434560 | MS.gene053894:CDS | 40.0% |
| !! | GTTTAGTTTGGGAGTTTGGA+GGG | + | chr5.3:43435863-43435882 | MS.gene053894:intron | 40.0% |
| !! | TTTAGTTTGGGAGTTTGGAG+GGG | + | chr5.3:43435864-43435883 | MS.gene053894:intron | 40.0% |
| !!! | ATTTTAGGTGGGCTGATAAC+TGG | + | chr5.3:43437452-43437471 | MS.gene053894:CDS | 40.0% |
| !!! | CTTTTGAGACTGTTTGGAAG+AGG | - | chr5.3:43435234-43435253 | None:intergenic | 40.0% |
| AAGCAACACCCCAGAAAAAC+TGG | - | chr5.3:43434813-43434832 | None:intergenic | 45.0% | |
| AAGTCGCTGGTGCAATGTTT+CGG | - | chr5.3:43438051-43438070 | None:intergenic | 45.0% | |
| ACGAGAATCAAGGTGATCGT+GGG | - | chr5.3:43438108-43438127 | None:intergenic | 45.0% | |
| AGAGGAATCCGGTCAAAGAT+AGG | + | chr5.3:43437069-43437088 | MS.gene053894:CDS | 45.0% | |
| ATCTTGTGGAGACTCTTGTC+AGG | + | chr5.3:43437133-43437152 | MS.gene053894:CDS | 45.0% | |
| CAACAACAACATCAGCGAAG+TGG | + | chr5.3:43434444-43434463 | MS.gene053894:CDS | 45.0% | |
| CCATGAAACGGAGACAGTTA+GGG | - | chr5.3:43436196-43436215 | None:intergenic | 45.0% | |
| CTTGTGGCGTATGATTGTTC+AGG | + | chr5.3:43437407-43437426 | MS.gene053894:CDS | 45.0% | |
| GAGAGTCGCATATGCGTTTA+TGG | + | chr5.3:43436501-43436520 | MS.gene053894:CDS | 45.0% | |
| GAGTCTCCACAAGATGGAAA+AGG | - | chr5.3:43437128-43437147 | None:intergenic | 45.0% | |
| GATGGTATGGAATCTTCCAG+AGG | + | chr5.3:43436474-43436493 | MS.gene053894:CDS | 45.0% | |
| GGTGCAATGTTTCGGAAATC+TGG | - | chr5.3:43438043-43438062 | None:intergenic | 45.0% | |
| GTGTTTGGGCATGGATGAAA+TGG | + | chr5.3:43437486-43437505 | MS.gene053894:CDS | 45.0% | |
| GTTACCCACTACTAAGTAGG+GGG | - | chr5.3:43437860-43437879 | None:intergenic | 45.0% | |
| GTTCGGATGCATATTCAGCA+AGG | - | chr5.3:43437891-43437910 | None:intergenic | 45.0% | |
| TACGAGAATCAAGGTGATCG+TGG | - | chr5.3:43438109-43438128 | None:intergenic | 45.0% | |
| TATGCGACTCTCATAACCTC+TGG | - | chr5.3:43436493-43436512 | None:intergenic | 45.0% | |
| TCAACACTCGAGAGAACTCA+GGG | - | chr5.3:43435670-43435689 | None:intergenic | 45.0% | |
| TCCATGAAACGGAGACAGTT+AGG | - | chr5.3:43436197-43436216 | None:intergenic | 45.0% | |
| TGACAAGAGTCTCCACAAGA+TGG | - | chr5.3:43437134-43437153 | None:intergenic | 45.0% | |
| TGAGACTGTTTGGAAGAGGT+TGG | - | chr5.3:43435230-43435249 | None:intergenic | 45.0% | |
| TGCTATTAGGACACTGCGAT+GGG | + | chr5.3:43436944-43436963 | MS.gene053894:CDS | 45.0% | |
| TGCTCTTATGGATGGCATTG+TGG | + | chr5.3:43436530-43436549 | MS.gene053894:CDS | 45.0% | |
| TGGATGGCATTGTGGTCATT+TGG | + | chr5.3:43436538-43436557 | MS.gene053894:CDS | 45.0% | |
| TTGGAGTCCCACCAAATTAG+GGG | + | chr5.3:43436078-43436097 | MS.gene053894:intron | 45.0% | |
| ! | ACATGGAGCAAAAAAGGCGT+TGG | + | chr5.3:43434470-43434489 | MS.gene053894:CDS | 45.0% |
| ! | ATGGAGTTGGTTGTTGCTGT+TGG | + | chr5.3:43434699-43434718 | MS.gene053894:CDS | 45.0% |
| ! | CGTTGATTGGAATAACTCCC+AGG | - | chr5.3:43437375-43437394 | None:intergenic | 45.0% |
| ! | CTCCCATGTCCTTTGAAGAT+TGG | + | chr5.3:43437311-43437330 | MS.gene053894:intron | 45.0% |
| ! | CTGATAACTGGAACTTGCTC+TGG | + | chr5.3:43437464-43437483 | MS.gene053894:CDS | 45.0% |
| ! | CTGGTTTGACAGAGGATTAC+TGG | + | chr5.3:43434635-43434654 | MS.gene053894:CDS | 45.0% |
| ! | GGTGTTGTAGCTTCAAGCAT+GGG | + | chr5.3:43436568-43436587 | MS.gene053894:CDS | 45.0% |
| ! | TAGGGGGCATGAATCAAACA+GGG | - | chr5.3:43437844-43437863 | None:intergenic | 45.0% |
| ! | TCAGGTGCTGTGCTGTTAAT+GGG | + | chr5.3:43437425-43437444 | MS.gene053894:CDS | 45.0% |
| ! | TGGAACTTGCTCTGGTGTTT+GGG | + | chr5.3:43437472-43437491 | MS.gene053894:CDS | 45.0% |
| ! | TGGAGTTGGTTGTTGCTGTT+GGG | + | chr5.3:43434700-43434719 | MS.gene053894:CDS | 45.0% |
| ! | TTCAGGTGCTGTGCTGTTAA+TGG | + | chr5.3:43437424-43437443 | MS.gene053894:CDS | 45.0% |
| !! | GGTTTAGTTTGGGAGTTTGG+AGG | + | chr5.3:43435862-43435881 | MS.gene053894:intron | 45.0% |
| !! | TAAGTACACGTACCGGTTCA+TGG | + | chr5.3:43434603-43434622 | MS.gene053894:CDS | 45.0% |
| !! | TGGTGTTGTAGCTTCAAGCA+TGG | + | chr5.3:43436567-43436586 | MS.gene053894:CDS | 45.0% |
| !! | TTGGTTCTGCAGCGACAAAA+TGG | + | chr5.3:43433958-43433977 | MS.gene053894:intron | 45.0% |
| !!! | TGGGGTGTTGCTTTTGCTAT+TGG | + | chr5.3:43434820-43434839 | MS.gene053894:CDS | 45.0% |
| !!! | TTTTTAGGTTGGAGCGGCAA+TGG | + | chr5.3:43437929-43437948 | MS.gene053894:intron | 45.0% |
| AGCTCCTATGTTGAAGTCGC+TGG | - | chr5.3:43438064-43438083 | None:intergenic | 50.0% | |
| CAAAACCCACGCCAATCAAC+TGG | - | chr5.3:43434528-43434547 | None:intergenic | 50.0% | |
| CAGCCTCATTCTCCATGAAC+CGG | - | chr5.3:43434618-43434637 | None:intergenic | 50.0% | |
| CATCAGCGAAGTGGTGAACA+TGG | + | chr5.3:43434453-43434472 | MS.gene053894:CDS | 50.0% | |
| CATGCCCCCTACTTAGTAGT+GGG | + | chr5.3:43437853-43437872 | MS.gene053894:intron | 50.0% | |
| CCCTAACTGTCTCCGTTTCA+TGG | + | chr5.3:43436193-43436212 | MS.gene053894:intron | 50.0% | |
| CTGCTATTAGGACACTGCGA+TGG | + | chr5.3:43436943-43436962 | MS.gene053894:CDS | 50.0% | |
| GAAGTTCAGGAGGAAGTGGA+AGG | - | chr5.3:43436165-43436184 | None:intergenic | 50.0% | |
| GAGGAAGTGGAAGGAAAGGA+GGG | - | chr5.3:43436156-43436175 | None:intergenic | 50.0% | |
| GGACAGACACCTTCATCATC+TGG | - | chr5.3:43434738-43434757 | None:intergenic | 50.0% | |
| GGCAGTGGAAGAATCCATGA+TGG | - | chr5.3:43433759-43433778 | None:intergenic | 50.0% | |
| GGCTGTCATGCTCTTATGGA+TGG | + | chr5.3:43436522-43436541 | MS.gene053894:CDS | 50.0% | |
| GTCAACACTCGAGAGAACTC+AGG | - | chr5.3:43435671-43435690 | None:intergenic | 50.0% | |
| GTGATCCAGTTGATTGGCGT+GGG | + | chr5.3:43434520-43434539 | MS.gene053894:CDS | 50.0% | |
| GTGCTTCAACTCCCGTTGAT+TGG | - | chr5.3:43437388-43437407 | None:intergenic | 50.0% | |
| TAGGGTCTGTCTGGAAGTTC+AGG | - | chr5.3:43436178-43436197 | None:intergenic | 50.0% | |
| TAGTATCCATGGTGGTTGCG+AGG | + | chr5.3:43436827-43436846 | MS.gene053894:CDS | 50.0% | |
| TATTAGGACACTGCGATGGG+AGG | + | chr5.3:43436947-43436966 | MS.gene053894:CDS | 50.0% | |
| TCAGGAGGAAGTGGAAGGAA+AGG | - | chr5.3:43436160-43436179 | None:intergenic | 50.0% | |
| TCATGCCCCCTACTTAGTAG+TGG | + | chr5.3:43437852-43437871 | MS.gene053894:intron | 50.0% | |
| TCTGGAAGTTCAGGAGGAAG+TGG | - | chr5.3:43436169-43436188 | None:intergenic | 50.0% | |
| TGCACCAGCGACTTCAACAT+AGG | + | chr5.3:43438057-43438076 | MS.gene053894:CDS | 50.0% | |
| TGGAAGGAAAGGAGGGCTTT+GGG | - | chr5.3:43436149-43436168 | None:intergenic | 50.0% | |
| TGGAGTCCCACCAAATTAGG+GGG | + | chr5.3:43436079-43436098 | MS.gene053894:intron | 50.0% | |
| TGGTGGAAACTCAACTTGGG+TGG | + | chr5.3:43437649-43437668 | MS.gene053894:intron | 50.0% | |
| TGTGATCCAGTTGATTGGCG+TGG | + | chr5.3:43434519-43434538 | MS.gene053894:CDS | 50.0% | |
| TTCCACTGCCACCAACAATC+AGG | + | chr5.3:43433769-43433788 | MS.gene053894:CDS | 50.0% | |
| ! | AACGGGAGTTGAAGCACTTG+TGG | + | chr5.3:43437391-43437410 | MS.gene053894:CDS | 50.0% |
| ! | AAGCGGTGGACTTTGTTGAG+AGG | + | chr5.3:43435891-43435910 | MS.gene053894:intron | 50.0% |
| ! | AGCGGTGGACTTTGTTGAGA+GGG | + | chr5.3:43435892-43435911 | MS.gene053894:intron | 50.0% |
| ! | CTGGAACTTGCTCTGGTGTT+TGG | + | chr5.3:43437471-43437490 | MS.gene053894:CDS | 50.0% |
| ! | CTGGGCTCACCAGTTTTTCT+GGG | + | chr5.3:43434801-43434820 | MS.gene053894:CDS | 50.0% |
| ! | GTAGGGGGCATGAATCAAAC+AGG | - | chr5.3:43437845-43437864 | None:intergenic | 50.0% |
| ! | TCTGGGCTCACCAGTTTTTC+TGG | + | chr5.3:43434800-43434819 | MS.gene053894:CDS | 50.0% |
| ! | TGGGCTCACCAGTTTTTCTG+GGG | + | chr5.3:43434802-43434821 | MS.gene053894:CDS | 50.0% |
| ! | TTGTGGTCATTTGGAGCTGC+TGG | + | chr5.3:43436547-43436566 | MS.gene053894:CDS | 50.0% |
| !! | GAATGAGGCTGGTTTGACAG+AGG | + | chr5.3:43434627-43434646 | MS.gene053894:CDS | 50.0% |
| !! | GTACCGGTTCATGGAGAATG+AGG | + | chr5.3:43434612-43434631 | MS.gene053894:CDS | 50.0% |
| !! | TACCTGATTGTTGGTGGCAG+TGG | - | chr5.3:43433774-43433793 | None:intergenic | 50.0% |
| AACATAGGAGCTCGCGTGCA+AGG | + | chr5.3:43438072-43438091 | MS.gene053894:CDS | 55.0% | |
| ACATAGGAGCTCGCGTGCAA+GGG | + | chr5.3:43438073-43438092 | MS.gene053894:CDS | 55.0% | |
| ACCGTTCTGCAAGAGATGCC+TGG | + | chr5.3:43437354-43437373 | MS.gene053894:CDS | 55.0% | |
| CCCAGGCATCTCTTGCAGAA+CGG | - | chr5.3:43437358-43437377 | None:intergenic | 55.0% | |
| CCGTTCTGCAAGAGATGCCT+GGG | + | chr5.3:43437355-43437374 | MS.gene053894:CDS | 55.0% | |
| CGGTTCATGGAGAATGAGGC+TGG | + | chr5.3:43434616-43434635 | MS.gene053894:CDS | 55.0% | |
| CTTGCTCTGGTGTTTGGGCA+TGG | + | chr5.3:43437477-43437496 | MS.gene053894:CDS | 55.0% | |
| GCGCGCAATCCAGATGATGA+AGG | + | chr5.3:43434726-43434745 | MS.gene053894:CDS | 55.0% | |
| GGACTGCTCTTGGATGGAGT+TGG | + | chr5.3:43434686-43434705 | MS.gene053894:CDS | 55.0% | |
| GGAGACAGTTAGGGTCTGTC+TGG | - | chr5.3:43436187-43436206 | None:intergenic | 55.0% | |
| GGAGGAAGTGGAAGGAAAGG+AGG | - | chr5.3:43436157-43436176 | None:intergenic | 55.0% | |
| GGTCTGTCTGGAAGTTCAGG+AGG | - | chr5.3:43436175-43436194 | None:intergenic | 55.0% | |
| GTAGCTTCAAGCATGGGCGA+CGG | + | chr5.3:43436574-43436593 | MS.gene053894:CDS | 55.0% | |
| GTGGAAGGAAAGGAGGGCTT+TGG | - | chr5.3:43436150-43436169 | None:intergenic | 55.0% | |
| GTTTGGGAGTTTGGAGGGGA+CGG | + | chr5.3:43435868-43435887 | MS.gene053894:intron | 55.0% | |
| TTGCGAGGCTGCATCAGTTC+CGG | + | chr5.3:43436842-43436861 | MS.gene053894:CDS | 55.0% | |
| TTTGGGAGGGACAGCCTTTG+GGG | - | chr5.3:43436132-43436151 | None:intergenic | 55.0% | |
| ! | CTTTGGGAGGGACAGCCTTT+GGG | - | chr5.3:43436133-43436152 | None:intergenic | 55.0% |
| !! | AAGGAAAGGAGGGCTTTGGG+AGG | - | chr5.3:43436146-43436165 | None:intergenic | 55.0% |
| !! | AGGAAAGGAGGGCTTTGGGA+GGG | - | chr5.3:43436145-43436164 | None:intergenic | 55.0% |
| !! | GAGATGCACAATGGGCTACC+TGG | - | chr5.3:43437182-43437201 | None:intergenic | 55.0% |
| !! | GGCGTTGGCACGATGTATTC+TGG | + | chr5.3:43434485-43434504 | MS.gene053894:CDS | 55.0% |
| ATGCAGCCTCGCAACCACCA+TGG | - | chr5.3:43436836-43436855 | None:intergenic | 60.0% | |
| CCACTCTATGCTGTCGCTGG+CGG | + | chr5.3:43434658-43434677 | MS.gene053894:CDS | 60.0% | |
| GAGTTTGGAGGGGACGGAAG+CGG | + | chr5.3:43435874-43435893 | MS.gene053894:intron | 60.0% | |
| GCGTTGGGACTGCTCTTGGA+TGG | + | chr5.3:43434680-43434699 | MS.gene053894:CDS | 60.0% | |
| GGTGGCTTCTTGTGGTGAGC+TGG | + | chr5.3:43436605-43436624 | MS.gene053894:intron | 60.0% | |
| GGTTGGAGCGGCAATGGTTG+TGG | + | chr5.3:43437935-43437954 | MS.gene053894:intron | 60.0% | |
| TGGAGCGGCAATGGTTGTGG+TGG | + | chr5.3:43437938-43437957 | MS.gene053894:CDS | 60.0% | |
| TGGCCACTCTATGCTGTCGC+TGG | + | chr5.3:43434655-43434674 | MS.gene053894:CDS | 60.0% | |
| !! | GCTTTGGGAGGGACAGCCTT+TGG | - | chr5.3:43436134-43436153 | None:intergenic | 60.0% |
| ATGCTGTCGCTGGCGGCGTT+GGG | + | chr5.3:43434665-43434684 | MS.gene053894:CDS | 65.0% | |
| CCGCCAGCGACAGCATAGAG+TGG | - | chr5.3:43434661-43434680 | None:intergenic | 65.0% | |
| CGGACGCTGGTGGCTTCTTG+TGG | + | chr5.3:43436597-43436616 | MS.gene053894:CDS | 65.0% | |
| GCTTCAAGCATGGGCGACGG+CGG | + | chr5.3:43436577-43436596 | MS.gene053894:CDS | 65.0% | |
| TATGCTGTCGCTGGCGGCGT+TGG | + | chr5.3:43434664-43434683 | MS.gene053894:CDS | 65.0% | |
| TTTGGAGGGGACGGAAGCGG+TGG | + | chr5.3:43435877-43435896 | MS.gene053894:intron | 65.0% | |
| ! | GGCGGCGTTGGGACTGCTCT+TGG | + | chr5.3:43434676-43434695 | MS.gene053894:CDS | 70.0% |
| ! | GCATGGGCGACGGCGGACGC+TGG | + | chr5.3:43436584-43436603 | MS.gene053894:CDS | 80.0% |
| ! | TGGGCGACGGCGGACGCTGG+TGG | + | chr5.3:43436587-43436606 | MS.gene053894:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 43433749 | 43438145 | 43433749 | ID=MS.gene053894 |
| chr5.3 | mRNA | 43433749 | 43438145 | 43433749 | ID=MS.gene053894.t1;Parent=MS.gene053894 |
| chr5.3 | exon | 43433749 | 43433790 | 43433749 | ID=MS.gene053894.t1.exon1;Parent=MS.gene053894.t1 |
| chr5.3 | CDS | 43433749 | 43433790 | 43433749 | ID=cds.MS.gene053894.t1;Parent=MS.gene053894.t1 |
| chr5.3 | exon | 43434424 | 43434884 | 43434424 | ID=MS.gene053894.t1.exon2;Parent=MS.gene053894.t1 |
| chr5.3 | CDS | 43434424 | 43434884 | 43434424 | ID=cds.MS.gene053894.t1;Parent=MS.gene053894.t1 |
| chr5.3 | exon | 43436435 | 43436618 | 43436435 | ID=MS.gene053894.t1.exon3;Parent=MS.gene053894.t1 |
| chr5.3 | CDS | 43436435 | 43436618 | 43436435 | ID=cds.MS.gene053894.t1;Parent=MS.gene053894.t1 |
| chr5.3 | exon | 43436744 | 43436968 | 43436744 | ID=MS.gene053894.t1.exon4;Parent=MS.gene053894.t1 |
| chr5.3 | CDS | 43436744 | 43436968 | 43436744 | ID=cds.MS.gene053894.t1;Parent=MS.gene053894.t1 |
| chr5.3 | exon | 43437066 | 43437182 | 43437066 | ID=MS.gene053894.t1.exon5;Parent=MS.gene053894.t1 |
| chr5.3 | CDS | 43437066 | 43437182 | 43437066 | ID=cds.MS.gene053894.t1;Parent=MS.gene053894.t1 |
| chr5.3 | exon | 43437329 | 43437562 | 43437329 | ID=MS.gene053894.t1.exon6;Parent=MS.gene053894.t1 |
| chr5.3 | CDS | 43437329 | 43437562 | 43437329 | ID=cds.MS.gene053894.t1;Parent=MS.gene053894.t1 |
| chr5.3 | exon | 43437936 | 43438145 | 43437936 | ID=MS.gene053894.t1.exon7;Parent=MS.gene053894.t1 |
| chr5.3 | CDS | 43437936 | 43438145 | 43437936 | ID=cds.MS.gene053894.t1;Parent=MS.gene053894.t1 |
| Gene Sequence |
| Protein sequence |
