Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97746.t1 | XP_003612790.3 | 89.2 | 582 | 27 | 2 | 1 | 546 | 1 | 582 | 1.90E-182 | 649 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97746.t1 | A0A396HQK4 | 84.2 | 582 | 27 | 3 | 1 | 546 | 1 | 553 | 2.6e-181 | 644.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04984 | MS.gene97746 | 0.813639 | 2.31E-51 | -1.69E-46 |
| MS.gene050277 | MS.gene97746 | 0.819756 | 9.83E-53 | -1.69E-46 |
| MS.gene050317 | MS.gene97746 | 0.823588 | 1.28E-53 | -1.69E-46 |
| MS.gene050815 | MS.gene97746 | 0.80306 | 4.17E-49 | -1.69E-46 |
| MS.gene050838 | MS.gene97746 | 0.810642 | 1.04E-50 | -1.69E-46 |
| MS.gene051245 | MS.gene97746 | 0.825211 | 5.31E-54 | -1.69E-46 |
| MS.gene051328 | MS.gene97746 | 0.811883 | 5.60E-51 | -1.69E-46 |
| MS.gene051757 | MS.gene97746 | 0.803069 | 4.16E-49 | -1.69E-46 |
| MS.gene052434 | MS.gene97746 | 0.805369 | 1.38E-49 | -1.69E-46 |
| MS.gene052896 | MS.gene97746 | 0.824758 | 6.79E-54 | -1.69E-46 |
| MS.gene053008 | MS.gene97746 | 0.819523 | 1.11E-52 | -1.69E-46 |
| MS.gene053109 | MS.gene97746 | 0.801461 | 8.91E-49 | -1.69E-46 |
| MS.gene053381 | MS.gene97746 | 0.867513 | 1.30E-65 | -1.69E-46 |
| MS.gene054823 | MS.gene97746 | 0.806313 | 8.74E-50 | -1.69E-46 |
| MS.gene056432 | MS.gene97746 | 0.841823 | 3.76E-58 | -1.69E-46 |
| MS.gene056552 | MS.gene97746 | 0.802796 | 4.73E-49 | -1.69E-46 |
| MS.gene056580 | MS.gene97746 | 0.811943 | 5.44E-51 | -1.69E-46 |
| MS.gene057057 | MS.gene97746 | 0.848837 | 4.75E-60 | -1.69E-46 |
| MS.gene057140 | MS.gene97746 | 0.82447 | 7.93E-54 | -1.69E-46 |
| MS.gene057234 | MS.gene97746 | 0.813483 | 2.50E-51 | -1.69E-46 |
| MS.gene058084 | MS.gene97746 | 0.811269 | 7.62E-51 | -1.69E-46 |
| MS.gene058182 | MS.gene97746 | 0.811439 | 7.00E-51 | -1.69E-46 |
| MS.gene058238 | MS.gene97746 | 0.815452 | 9.18E-52 | -1.69E-46 |
| MS.gene058399 | MS.gene97746 | 0.815785 | 7.74E-52 | -1.69E-46 |
| MS.gene058646 | MS.gene97746 | 0.831708 | 1.43E-55 | -1.69E-46 |
| MS.gene058654 | MS.gene97746 | 0.834174 | 3.49E-56 | -1.69E-46 |
| MS.gene058906 | MS.gene97746 | 0.831111 | 2.01E-55 | -1.69E-46 |
| MS.gene059249 | MS.gene97746 | 0.806269 | 8.93E-50 | -1.69E-46 |
| MS.gene06011 | MS.gene97746 | 0.808929 | 2.43E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97746.t1 | MTR_5g029070 | 87.868 | 577 | 34 | 2 | 6 | 546 | 2 | 578 | 0.0 | 918 |
| MS.gene97746.t1 | MTR_5g029070 | 82.990 | 582 | 34 | 3 | 1 | 546 | 1 | 553 | 0.0 | 855 |
| MS.gene97746.t1 | MTR_5g097170 | 28.746 | 574 | 332 | 19 | 2 | 539 | 149 | 681 | 8.73e-52 | 188 |
| MS.gene97746.t1 | MTR_3g099170 | 41.991 | 231 | 127 | 3 | 316 | 541 | 549 | 777 | 2.07e-48 | 180 |
| MS.gene97746.t1 | MTR_3g082810 | 41.991 | 231 | 126 | 4 | 315 | 539 | 445 | 673 | 1.20e-47 | 176 |
| MS.gene97746.t1 | MTR_3g091040 | 39.535 | 258 | 140 | 5 | 291 | 542 | 445 | 692 | 5.13e-46 | 172 |
| MS.gene97746.t1 | MTR_1g060440 | 32.759 | 232 | 147 | 4 | 314 | 539 | 416 | 644 | 6.49e-37 | 145 |
| MS.gene97746.t1 | MTR_1g051765 | 27.841 | 352 | 226 | 10 | 211 | 539 | 17 | 363 | 3.05e-34 | 133 |
| MS.gene97746.t1 | MTR_6g059870 | 33.790 | 219 | 138 | 3 | 328 | 541 | 467 | 683 | 1.07e-33 | 136 |
| MS.gene97746.t1 | MTR_2g020420 | 32.900 | 231 | 146 | 6 | 316 | 541 | 444 | 670 | 1.43e-29 | 124 |
| MS.gene97746.t1 | MTR_2g020420 | 34.426 | 244 | 131 | 13 | 314 | 540 | 713 | 944 | 4.42e-25 | 110 |
| MS.gene97746.t1 | MTR_4g118660 | 34.043 | 235 | 143 | 6 | 319 | 546 | 474 | 703 | 1.46e-29 | 124 |
| MS.gene97746.t1 | MTR_4g118660 | 34.583 | 240 | 142 | 8 | 308 | 539 | 761 | 993 | 4.61e-27 | 116 |
| MS.gene97746.t1 | MTR_2g020420 | 32.900 | 231 | 146 | 6 | 316 | 541 | 431 | 657 | 1.46e-29 | 124 |
| MS.gene97746.t1 | MTR_2g020420 | 34.426 | 244 | 131 | 13 | 314 | 540 | 700 | 931 | 4.62e-25 | 110 |
| MS.gene97746.t1 | MTR_1g081970 | 30.342 | 234 | 151 | 7 | 314 | 539 | 419 | 648 | 1.72e-29 | 123 |
| MS.gene97746.t1 | MTR_7g114150 | 28.936 | 235 | 157 | 6 | 314 | 542 | 455 | 685 | 1.09e-24 | 109 |
| MS.gene97746.t1 | MTR_7g114150 | 32.287 | 223 | 128 | 8 | 323 | 535 | 870 | 1079 | 9.44e-23 | 103 |
| MS.gene97746.t1 | MTR_8g011080 | 32.243 | 214 | 121 | 8 | 340 | 546 | 419 | 615 | 9.03e-21 | 96.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97746.t1 | AT2G35540 | 43.343 | 353 | 181 | 9 | 196 | 540 | 247 | 588 | 4.43e-77 | 254 |
| MS.gene97746.t1 | AT2G05230 | 25.874 | 572 | 356 | 17 | 7 | 546 | 171 | 706 | 4.96e-44 | 166 |
| MS.gene97746.t1 | AT2G05250 | 25.874 | 572 | 356 | 17 | 7 | 546 | 171 | 706 | 4.96e-44 | 166 |
| MS.gene97746.t1 | AT5G35753 | 35.470 | 234 | 142 | 5 | 316 | 543 | 196 | 426 | 5.26e-42 | 156 |
| MS.gene97746.t1 | AT5G53150 | 36.929 | 241 | 144 | 4 | 301 | 535 | 433 | 671 | 3.18e-39 | 152 |
| MS.gene97746.t1 | AT5G53150 | 36.929 | 241 | 144 | 4 | 301 | 535 | 433 | 671 | 3.18e-39 | 152 |
| MS.gene97746.t1 | AT5G53150 | 37.500 | 232 | 137 | 4 | 310 | 535 | 471 | 700 | 4.29e-39 | 152 |
| MS.gene97746.t1 | AT5G53150 | 37.500 | 232 | 137 | 4 | 310 | 535 | 471 | 700 | 4.29e-39 | 152 |
| MS.gene97746.t1 | AT5G53150 | 37.500 | 232 | 137 | 4 | 310 | 535 | 471 | 700 | 4.29e-39 | 152 |
| MS.gene97746.t1 | AT2G25560 | 40.260 | 231 | 128 | 5 | 315 | 539 | 423 | 649 | 2.13e-37 | 147 |
| MS.gene97746.t1 | AT5G50115 | 34.677 | 248 | 131 | 8 | 295 | 541 | 245 | 462 | 9.90e-30 | 122 |
| MS.gene97746.t1 | AT3G06340 | 30.085 | 236 | 152 | 5 | 309 | 538 | 421 | 649 | 1.22e-27 | 117 |
| MS.gene97746.t1 | AT3G06340 | 30.085 | 236 | 152 | 5 | 309 | 538 | 421 | 649 | 1.22e-27 | 117 |
| MS.gene97746.t1 | AT3G06340 | 30.085 | 236 | 152 | 5 | 309 | 538 | 421 | 649 | 1.22e-27 | 117 |
| MS.gene97746.t1 | AT3G06340 | 30.085 | 236 | 152 | 5 | 309 | 538 | 421 | 649 | 1.22e-27 | 117 |
| MS.gene97746.t1 | AT5G18750 | 29.915 | 234 | 150 | 6 | 316 | 538 | 396 | 626 | 7.59e-25 | 109 |
| MS.gene97746.t1 | AT5G18750 | 28.346 | 254 | 168 | 10 | 294 | 538 | 633 | 881 | 8.20e-19 | 90.9 |
| MS.gene97746.t1 | AT5G18730 | 29.362 | 235 | 144 | 5 | 323 | 538 | 44 | 275 | 2.13e-24 | 107 |
| MS.gene97746.t1 | AT3G04980 | 27.126 | 247 | 157 | 7 | 309 | 545 | 483 | 716 | 2.55e-24 | 108 |
| MS.gene97746.t1 | AT3G04980 | 30.180 | 222 | 135 | 9 | 324 | 541 | 977 | 1182 | 6.02e-18 | 88.2 |
| MS.gene97746.t1 | AT3G04980 | 27.126 | 247 | 157 | 7 | 309 | 545 | 483 | 716 | 2.55e-24 | 108 |
| MS.gene97746.t1 | AT3G04980 | 30.180 | 222 | 135 | 9 | 324 | 541 | 977 | 1182 | 6.02e-18 | 88.2 |
| MS.gene97746.t1 | AT3G04980 | 27.126 | 247 | 157 | 7 | 309 | 545 | 465 | 698 | 2.62e-24 | 108 |
| MS.gene97746.t1 | AT3G04980 | 30.180 | 222 | 135 | 9 | 324 | 541 | 959 | 1164 | 6.42e-18 | 88.2 |
| MS.gene97746.t1 | AT3G04960 | 30.120 | 249 | 151 | 8 | 294 | 535 | 252 | 484 | 9.79e-24 | 105 |
| MS.gene97746.t1 | AT5G18740 | 28.632 | 234 | 146 | 5 | 323 | 538 | 174 | 404 | 1.01e-23 | 104 |
| MS.gene97746.t1 | AT3G04960 | 30.120 | 249 | 151 | 8 | 294 | 535 | 301 | 533 | 1.28e-23 | 105 |
| MS.gene97746.t1 | AT3G04960 | 30.120 | 249 | 151 | 8 | 294 | 535 | 304 | 536 | 1.90e-23 | 104 |
| MS.gene97746.t1 | AT3G04960 | 30.120 | 249 | 151 | 8 | 294 | 535 | 353 | 585 | 2.46e-23 | 104 |
| MS.gene97746.t1 | AT4G27980 | 29.536 | 237 | 145 | 8 | 307 | 535 | 307 | 529 | 1.84e-21 | 98.6 |
| MS.gene97746.t1 | AT4G27980 | 29.536 | 237 | 145 | 8 | 307 | 535 | 345 | 567 | 1.87e-21 | 98.6 |
| MS.gene97746.t1 | AT4G27980 | 29.536 | 237 | 145 | 8 | 307 | 535 | 344 | 566 | 2.01e-21 | 98.6 |
| MS.gene97746.t1 | AT3G05110 | 31.429 | 210 | 124 | 7 | 315 | 518 | 158 | 353 | 1.36e-19 | 91.3 |
| MS.gene97746.t1 | AT5G27240 | 26.291 | 213 | 137 | 5 | 324 | 530 | 894 | 1092 | 7.11e-14 | 75.5 |
| MS.gene97746.t1 | AT5G27240 | 26.291 | 213 | 137 | 5 | 324 | 530 | 894 | 1092 | 7.11e-14 | 75.5 |
| MS.gene97746.t1 | AT5G27240 | 26.291 | 213 | 137 | 5 | 324 | 530 | 894 | 1092 | 7.11e-14 | 75.5 |
Find 148 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGTTTGAGAGAAAGTATT+TGG | 0.156491 | 5.1:+19738980 | MS.gene97746:CDS |
| CAACTTATCATCACGTTAAA+AGG | 0.163840 | 5.1:-19740019 | None:intergenic |
| GAAGAAGATGAATGGGAAAA+TGG | 0.211408 | 5.1:+19739325 | MS.gene97746:CDS |
| ATAGTTAGTGGAGAGAAATT+AGG | 0.213012 | 5.1:+19740073 | MS.gene97746:CDS |
| AAAAGAAAAGGAGGAGAAAA+TGG | 0.223877 | 5.1:+19739589 | MS.gene97746:CDS |
| GAAGAAGGGTATTGGGAAAA+TGG | 0.227761 | 5.1:+19739139 | MS.gene97746:CDS |
| AGGTATGGTGGTTGCGGATT+TGG | 0.251533 | 5.1:+19739691 | MS.gene97746:CDS |
| TGAACCTATGGAAGCCTTCT+TGG | 0.255735 | 5.1:-19740128 | None:intergenic |
| TAGTTAGTGGAGAGAAATTA+GGG | 0.266470 | 5.1:+19740074 | MS.gene97746:CDS |
| AGTCATGCGGTTAGATTTCT+TGG | 0.271454 | 5.1:+19740394 | MS.gene97746:CDS |
| GGTGAAGTGGGTTGTGAAAA+AGG | 0.282882 | 5.1:+19739194 | MS.gene97746:CDS |
| TCACTCCCAACAACCATCTT+TGG | 0.283529 | 5.1:-19739494 | None:intergenic |
| GCGGTCGGTTGGGGAGGTTT+TGG | 0.284678 | 5.1:+19739460 | MS.gene97746:CDS |
| GGTTATGGCGGTTGCGGATT+CGG | 0.286832 | 5.1:+19739778 | MS.gene97746:CDS |
| CCTTCAGATTTACTTACTAT+TGG | 0.300974 | 5.1:+19740526 | MS.gene97746:CDS |
| TCTTTCCATCCCCATTGTTA+TGG | 0.315982 | 5.1:-19740051 | None:intergenic |
| TGGAGAGGAATTAGAGGTTA+TGG | 0.339470 | 5.1:+19739850 | MS.gene97746:CDS |
| TCCTAAGAAGGGTTCAGTTT+GGG | 0.345522 | 5.1:+19740213 | MS.gene97746:CDS |
| GGGAATAAGCTTGTCTGTCC+GGG | 0.354071 | 5.1:+19739002 | MS.gene97746:CDS |
| GAGTTTGAGAGAAAGTATTT+GGG | 0.354164 | 5.1:+19738981 | MS.gene97746:CDS |
| GGTGAAGTGGGTTGTGAAAA+TGG | 0.355602 | 5.1:+19739380 | MS.gene97746:CDS |
| GGTTATGGCAGTTGCGGATT+CGG | 0.360274 | 5.1:+19739865 | MS.gene97746:CDS |
| AGAAGAAGAAAATGAAACTT+TGG | 0.363734 | 5.1:+19739082 | MS.gene97746:CDS |
| GACTGCTTGTAATACTTGTA+AGG | 0.378528 | 5.1:+19738950 | MS.gene97746:CDS |
| GAAGAAGAAAATGAAACTTT+GGG | 0.380834 | 5.1:+19739083 | MS.gene97746:CDS |
| ATCCTAAGAAGGGTTCAGTT+TGG | 0.390524 | 5.1:+19740212 | MS.gene97746:CDS |
| GGGGAATAAGCTTGTCTGTC+CGG | 0.392265 | 5.1:+19739001 | MS.gene97746:CDS |
| TTGGATTCTGTGAAGAGAAA+AGG | 0.392753 | 5.1:+19739710 | MS.gene97746:CDS |
| GCCCAAACTGAACCCTTCTT+AGG | 0.394311 | 5.1:-19740214 | None:intergenic |
| TGAGATGAATGGTATAAGTA+TGG | 0.396471 | 5.1:+19740315 | MS.gene97746:CDS |
| TTACAAAATTTATCCTAAGA+AGG | 0.400310 | 5.1:+19740201 | MS.gene97746:CDS |
| ACATGAAGAAGAAGGGTATT+GGG | 0.405660 | 5.1:+19739132 | MS.gene97746:CDS |
| GGAAGAGAACGCGGTCGGTT+GGG | 0.406563 | 5.1:+19739450 | MS.gene97746:CDS |
| GATGATGAAGTGGGTATTGT+TGG | 0.408349 | 5.1:+19739419 | MS.gene97746:CDS |
| GCATATCTTGAGAAGGTTGA+TGG | 0.415074 | 5.1:+19740337 | MS.gene97746:CDS |
| AACATGAAGAAGAAGGGTAT+TGG | 0.415446 | 5.1:+19739131 | MS.gene97746:CDS |
| GAAGAAGAACATGAAGAAGA+AGG | 0.415755 | 5.1:+19739124 | MS.gene97746:CDS |
| TACTAGTGGAGAGGAATTAG+AGG | 0.416709 | 5.1:+19739757 | MS.gene97746:CDS |
| TACTAGTGGAGAGGAATTAG+AGG | 0.416709 | 5.1:+19739844 | MS.gene97746:CDS |
| TGGAGAGGAATTAGAGGTTA+TGG | 0.421686 | 5.1:+19739763 | MS.gene97746:CDS |
| AACATGAAGAAGAAGATGAA+TGG | 0.424040 | 5.1:+19739317 | MS.gene97746:CDS |
| AAGAAGGGTATTGGGAAAAT+GGG | 0.426646 | 5.1:+19739140 | MS.gene97746:CDS |
| GGGGATGGAAAGATAGTTAG+TGG | 0.428282 | 5.1:+19740061 | MS.gene97746:CDS |
| ACTAGTGGAGGGGAATTAGA+AGG | 0.428632 | 5.1:+19739671 | MS.gene97746:CDS |
| AAGAAGATGAATGGGAAAAT+GGG | 0.428753 | 5.1:+19739326 | MS.gene97746:CDS |
| GGTTGGATTTCCATAACAAT+GGG | 0.434258 | 5.1:+19740041 | MS.gene97746:CDS |
| TGGATTCTGTGAAGAGAAAA+GGG | 0.435541 | 5.1:+19739711 | MS.gene97746:CDS |
| ACATGAAGAAGAAGATGAAT+GGG | 0.441386 | 5.1:+19739318 | MS.gene97746:CDS |
| AGACTGTTGGGAGCTTGATC+CGG | 0.443550 | 5.1:+19740495 | MS.gene97746:CDS |
| TCGGATCCTGTGAAGAGAAA+AGG | 0.446818 | 5.1:+19739797 | MS.gene97746:CDS |
| TCTAAACCAAAGATGGTTGT+TGG | 0.447447 | 5.1:+19739488 | MS.gene97746:CDS |
| TTTAAGGGTAATGGTGAAGT+GGG | 0.449709 | 5.1:+19739182 | MS.gene97746:CDS |
| GAAGAGAACGCGGTCGGTTG+GGG | 0.451886 | 5.1:+19739451 | MS.gene97746:CDS |
| GGAGAGTTCTAAACCAAAGA+TGG | 0.452393 | 5.1:+19739481 | MS.gene97746:CDS |
| GAGGGTTCTGTGAGGAGAAA+GGG | 0.453665 | 5.1:+19739623 | MS.gene97746:CDS |
| TCAGATTTACTTACTATTGG+TGG | 0.458174 | 5.1:+19740529 | MS.gene97746:CDS |
| GAGATTTAAAGTTGCCAAGA+AGG | 0.460272 | 5.1:+19740114 | MS.gene97746:CDS |
| CTCATGTTGTCGATTGCGAT+CGG | 0.466482 | 5.1:+19740164 | MS.gene97746:CDS |
| GAAGACATTTACTGAACCTA+TGG | 0.466859 | 5.1:-19740140 | None:intergenic |
| CTAAACCAAAGATGGTTGTT+GGG | 0.467203 | 5.1:+19739489 | MS.gene97746:CDS |
| ATTAGAGGTTATGGCGGTTG+CGG | 0.469315 | 5.1:+19739772 | MS.gene97746:CDS |
| TTGAAGGGTAATGGTGAAGT+GGG | 0.473321 | 5.1:+19739368 | MS.gene97746:CDS |
| GATGGTGAAGGGAAAAGAAA+AGG | 0.476908 | 5.1:+19739577 | MS.gene97746:CDS |
| TGGGTATTGTTGGGAGATTG+AGG | 0.478185 | 5.1:+19739429 | MS.gene97746:CDS |
| TACAAAATTTATCCTAAGAA+GGG | 0.481317 | 5.1:+19740202 | MS.gene97746:CDS |
| ATTAGAAGGTATGGTGGTTG+CGG | 0.482229 | 5.1:+19739685 | MS.gene97746:CDS |
| AAGAAGAACATGAAGAAGAA+GGG | 0.484729 | 5.1:+19739125 | MS.gene97746:CDS |
| TTGCGATCGGGCAGCGCGCG+AGG | 0.487386 | 5.1:+19740177 | MS.gene97746:CDS |
| TAGGGTTTAAAATACCTTGT+GGG | 0.489549 | 5.1:+19740092 | MS.gene97746:CDS |
| AGGAAGAGAACGCGGTCGGT+TGG | 0.490546 | 5.1:+19739449 | MS.gene97746:CDS |
| TAACGTGATGATAAGTTGGT+TGG | 0.491640 | 5.1:+19740024 | MS.gene97746:CDS |
| TCATGTTGTCGATTGCGATC+GGG | 0.497554 | 5.1:+19740165 | MS.gene97746:CDS |
| GTTGAGATCTGAGAGGCATA+TGG | 0.497861 | 5.1:+19739820 | MS.gene97746:CDS |
| TGAGGGTTCTGTGAGGAGAA+AGG | 0.501606 | 5.1:+19739622 | MS.gene97746:CDS |
| GGTCGAGACTTGAGAGGCAC+AGG | 0.501652 | 5.1:+19739645 | MS.gene97746:CDS |
| TTTGAAGGGTAATGGTGAAG+TGG | 0.510072 | 5.1:+19739367 | MS.gene97746:CDS |
| GTCATGCGGTTAGATTTCTT+GGG | 0.511704 | 5.1:+19740395 | MS.gene97746:CDS |
| CGGATCCTGTGAAGAGAAAA+GGG | 0.513830 | 5.1:+19739798 | MS.gene97746:CDS |
| GAGAACGCGGTCGGTTGGGG+AGG | 0.517601 | 5.1:+19739454 | MS.gene97746:CDS |
| ATGAATTGTTGAAAGACTGT+TGG | 0.519405 | 5.1:+19740482 | MS.gene97746:CDS |
| TGGTTGGATTTCCATAACAA+TGG | 0.523700 | 5.1:+19740040 | MS.gene97746:CDS |
| GTGTATGATGGTGATGATGA+TGG | 0.526875 | 5.1:+19739950 | MS.gene97746:CDS |
| TGAATTGTTGAAAGACTGTT+GGG | 0.532010 | 5.1:+19740483 | MS.gene97746:CDS |
| TGTTATGAATGATGAGTTTG+AGG | 0.532091 | 5.1:+19739055 | MS.gene97746:CDS |
| GATTTCCATAACAATGGGGA+TGG | 0.536962 | 5.1:+19740046 | MS.gene97746:CDS |
| TGGAGGGGAATTAGAAGGTA+TGG | 0.546089 | 5.1:+19739676 | MS.gene97746:CDS |
| ACAAGTTACAGTGAGATGAA+TGG | 0.546780 | 5.1:+19740304 | MS.gene97746:CDS |
| ATTAGAGGTTATGGCAGTTG+CGG | 0.551620 | 5.1:+19739859 | MS.gene97746:CDS |
| AATTCATGATCCTCGTCGCA+AGG | 0.552139 | 5.1:-19740466 | None:intergenic |
| CAAGTTTGGGCTGTGTATGA+TGG | 0.556152 | 5.1:+19739938 | MS.gene97746:CDS |
| TGGGAAAATGGGTTGTGAAA+AGG | 0.556504 | 5.1:+19739337 | MS.gene97746:CDS |
| ATTGGTGGCATAGATAATTG+AGG | 0.557425 | 5.1:+19740544 | MS.gene97746:CDS |
| TGCGGTTAGATTTCTTGGGA+AGG | 0.560078 | 5.1:+19740399 | MS.gene97746:CDS |
| AAAATGGAGAAGAAGCTTGA+GGG | 0.560242 | 5.1:+19739605 | MS.gene97746:CDS |
| GGTGAAGGGAAAAGAAAAGG+AGG | 0.561306 | 5.1:+19739580 | MS.gene97746:CDS |
| GAAAATGGAGAAGAAGCTTG+AGG | 0.563044 | 5.1:+19739604 | MS.gene97746:CDS |
| AAATCTGAAGGAAGTGAAGC+CGG | 0.563049 | 5.1:-19740514 | None:intergenic |
| TTTAAGGGTGATGATGAAGT+GGG | 0.572445 | 5.1:+19739410 | MS.gene97746:CDS |
| GGCGAGTCTTGATGCAGGTG+AGG | 0.575765 | 5.1:+19740249 | MS.gene97746:CDS |
| AAGAAGAAAATGAAACTTTG+GGG | 0.586059 | 5.1:+19739084 | MS.gene97746:CDS |
| GTTGCCAAGAAGGCTTCCAT+AGG | 0.588409 | 5.1:+19740124 | MS.gene97746:CDS |
| GCGAGTCTTGATGCAGGTGA+GGG | 0.589912 | 5.1:+19740250 | MS.gene97746:CDS |
| ATGATGAAGTGGGTATTGTT+GGG | 0.590619 | 5.1:+19739420 | MS.gene97746:CDS |
| GTGTTTAAGAGACAAGAGAG+TGG | 0.591607 | 5.1:+19740370 | MS.gene97746:CDS |
| GAGAGGCATATGGATACTAG+TGG | 0.593323 | 5.1:+19739830 | MS.gene97746:CDS |
| TTGATAAAGATCGAGTGGAG+AGG | 0.594894 | 5.1:+19739900 | MS.gene97746:CDS |
| ATTCATGATCCTCGTCGCAA+GGG | 0.598622 | 5.1:-19740465 | None:intergenic |
| TTAGGGTTTAAAATACCTTG+TGG | 0.601833 | 5.1:+19740091 | MS.gene97746:CDS |
| TCAATCAGAACATATTGCCT+CGG | 0.603224 | 5.1:-19739977 | None:intergenic |
| TGTTTAAGAGACAAGAGAGT+GGG | 0.603598 | 5.1:+19740371 | MS.gene97746:CDS |
| GAGAGGCAAGTGGATACTAG+TGG | 0.606624 | 5.1:+19739743 | MS.gene97746:CDS |
| CCAATAGTAAGTAAATCTGA+AGG | 0.606962 | 5.1:-19740526 | None:intergenic |
| GAGAAAGCTTCATCAAGAGA+TGG | 0.608896 | 5.1:+19739559 | MS.gene97746:CDS |
| AGTGAGGCGAGTCTTGATGC+AGG | 0.612149 | 5.1:+19740244 | MS.gene97746:CDS |
| GATGGTTGTTGGGAGTGAAG+AGG | 0.618340 | 5.1:+19739499 | MS.gene97746:CDS |
| AGTTTGAGAGAAAGTATTTG+GGG | 0.619105 | 5.1:+19738982 | MS.gene97746:CDS |
| GCTTCATCAAGAGATGGTGA+AGG | 0.622583 | 5.1:+19739565 | MS.gene97746:CDS |
| AAGTATGGCATATCTTGAGA+AGG | 0.623110 | 5.1:+19740330 | MS.gene97746:CDS |
| GGCACAGGGATACTAGTGGA+GGG | 0.623915 | 5.1:+19739660 | MS.gene97746:CDS |
| TCGCAAGGGAATTTCCGCGC+AGG | 0.625413 | 5.1:-19740451 | None:intergenic |
| CTTCATCAAGAGATGGTGAA+GGG | 0.628571 | 5.1:+19739566 | MS.gene97746:CDS |
| GAAAGGGGTCGAGACTTGAG+AGG | 0.629485 | 5.1:+19739639 | MS.gene97746:CDS |
| AGGCACAGGGATACTAGTGG+AGG | 0.630859 | 5.1:+19739659 | MS.gene97746:CDS |
| GTTGAGATCTGAGAGGCAAG+TGG | 0.637099 | 5.1:+19739733 | MS.gene97746:CDS |
| AGGGTTCTGTGAGGAGAAAG+GGG | 0.637256 | 5.1:+19739624 | MS.gene97746:CDS |
| AGAGGAATTAGAGGTTATGG+CGG | 0.638194 | 5.1:+19739766 | MS.gene97746:CDS |
| GCAAGTGGATACTAGTGGAG+AGG | 0.640255 | 5.1:+19739748 | MS.gene97746:CDS |
| AGGGGAATTAGAAGGTATGG+TGG | 0.643351 | 5.1:+19739679 | MS.gene97746:CDS |
| GCACAGGGATACTAGTGGAG+GGG | 0.645296 | 5.1:+19739661 | MS.gene97746:CDS |
| AGTTTGGGCGCTTTACAGTG+AGG | 0.645814 | 5.1:+19740228 | MS.gene97746:CDS |
| AGAAGAAAATGAAACTTTGG+GGG | 0.647412 | 5.1:+19739085 | MS.gene97746:CDS |
| GCATATGGATACTAGTGGAG+AGG | 0.648882 | 5.1:+19739835 | MS.gene97746:CDS |
| ATTGAGGAAGAGAACGCGGT+CGG | 0.656084 | 5.1:+19739445 | MS.gene97746:CDS |
| AGAAGCTTGAGGGTTCTGTG+AGG | 0.659031 | 5.1:+19739615 | MS.gene97746:CDS |
| GGAATAAGCTTGTCTGTCCG+GGG | 0.661358 | 5.1:+19739003 | MS.gene97746:CDS |
| ACAAGAGAGTGGGAGTCATG+CGG | 0.661866 | 5.1:+19740381 | MS.gene97746:CDS |
| TTAAAACTCTTATTACACCC+CGG | 0.673794 | 5.1:-19739020 | None:intergenic |
| GTTGGATTTCCATAACAATG+GGG | 0.679276 | 5.1:+19740042 | MS.gene97746:CDS |
| GCAACTTTAAATCTCCCACA+AGG | 0.680984 | 5.1:-19740106 | None:intergenic |
| GAGAGGCACAGGGATACTAG+TGG | 0.683028 | 5.1:+19739656 | MS.gene97746:CDS |
| GTCGAGACTTGAGAGGCACA+GGG | 0.683704 | 5.1:+19739646 | MS.gene97746:CDS |
| GCGGAAATTCCCTTGCGACG+AGG | 0.697196 | 5.1:+19740456 | MS.gene97746:CDS |
| TATGAATGATGAGTTTGAGG+AGG | 0.701073 | 5.1:+19739058 | MS.gene97746:CDS |
| GAAAAGGGTTGAGATCTGAG+AGG | 0.724436 | 5.1:+19739813 | MS.gene97746:CDS |
| GAAAAGGGTTGAGATCTGAG+AGG | 0.737067 | 5.1:+19739726 | MS.gene97746:CDS |
| GGAGATTGAGGAAGAGAACG+CGG | 0.743265 | 5.1:+19739441 | MS.gene97746:CDS |
| TTTCTCATCAGATTCCTGCG+CGG | 0.774610 | 5.1:+19740437 | MS.gene97746:CDS |
| GTGATGATGATGGAATGCCG+AGG | 0.814192 | 5.1:+19739960 | MS.gene97746:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACAAAATTTATCCTAAGAA+GGG | + | chr5.1:19740202-19740221 | MS.gene97746:CDS | 20.0% |
| !! | TTACAAAATTTATCCTAAGA+AGG | + | chr5.1:19740201-19740220 | MS.gene97746:CDS | 20.0% |
| !!! | GAAAAAGATGAGATTTTTAA+GGG | + | chr5.1:19739167-19739186 | MS.gene97746:CDS | 20.0% |
| !!! | TGAAAAAGATGAGATTTTTA+AGG | + | chr5.1:19739166-19739185 | MS.gene97746:CDS | 20.0% |
| ! | AAGAAAAAGATAAGACTTTG+GGG | + | chr5.1:19739270-19739289 | MS.gene97746:CDS | 25.0% |
| ! | AAGAAGAAAATGAAACTTTG+GGG | + | chr5.1:19739084-19739103 | MS.gene97746:CDS | 25.0% |
| ! | AGAAGAAGAAAATGAAACTT+TGG | + | chr5.1:19739082-19739101 | MS.gene97746:CDS | 25.0% |
| ! | GAAGAAAAAGATAAGACTTT+GGG | + | chr5.1:19739269-19739288 | MS.gene97746:CDS | 25.0% |
| ! | GAAGAAGAAAATGAAACTTT+GGG | + | chr5.1:19739083-19739102 | MS.gene97746:CDS | 25.0% |
| ! | TGAAGAAAAAGATAAGACTT+TGG | + | chr5.1:19739268-19739287 | MS.gene97746:CDS | 25.0% |
| !! | GAAAATGGTGAGAATTTTAA+GGG | + | chr5.1:19739395-19739414 | MS.gene97746:CDS | 25.0% |
| !! | TGAAAATGGTGAGAATTTTA+AGG | + | chr5.1:19739394-19739413 | MS.gene97746:CDS | 25.0% |
| !!! | TTTTAAGAAAGGTCAAGTTT+GGG | + | chr5.1:19739925-19739944 | MS.gene97746:CDS | 25.0% |
| AAAAGAAAAGGAGGAGAAAA+TGG | + | chr5.1:19739589-19739608 | MS.gene97746:CDS | 30.0% | |
| AACATGAAGAAGAAGATGAA+TGG | + | chr5.1:19739317-19739336 | MS.gene97746:CDS | 30.0% | |
| AAGAAGAACATGAAGAAGAA+GGG | + | chr5.1:19739125-19739144 | MS.gene97746:CDS | 30.0% | |
| AAGAAGATGAATGGGAAAAT+GGG | + | chr5.1:19739326-19739345 | MS.gene97746:CDS | 30.0% | |
| ACATGAAGAAGAAGATGAAT+GGG | + | chr5.1:19739318-19739337 | MS.gene97746:CDS | 30.0% | |
| AGAAAAAGATAAGACTTTGG+GGG | + | chr5.1:19739271-19739290 | MS.gene97746:CDS | 30.0% | |
| AGAAGAAAATGAAACTTTGG+GGG | + | chr5.1:19739085-19739104 | MS.gene97746:CDS | 30.0% | |
| ATAGTTAGTGGAGAGAAATT+AGG | + | chr5.1:19740073-19740092 | MS.gene97746:CDS | 30.0% | |
| ATGAATTGTTGAAAGACTGT+TGG | + | chr5.1:19740482-19740501 | MS.gene97746:CDS | 30.0% | |
| CAACTTATCATCACGTTAAA+AGG | - | chr5.1:19740022-19740041 | None:intergenic | 30.0% | |
| CCAATAGTAAGTAAATCTGA+AGG | - | chr5.1:19740529-19740548 | None:intergenic | 30.0% | |
| CCTTCAGATTTACTTACTAT+TGG | + | chr5.1:19740526-19740545 | MS.gene97746:CDS | 30.0% | |
| TAGTTAGTGGAGAGAAATTA+GGG | + | chr5.1:19740074-19740093 | MS.gene97746:CDS | 30.0% | |
| TCAGATTTACTTACTATTGG+TGG | + | chr5.1:19740529-19740548 | MS.gene97746:CDS | 30.0% | |
| TGAATTGTTGAAAGACTGTT+GGG | + | chr5.1:19740483-19740502 | MS.gene97746:CDS | 30.0% | |
| TGAGATGAATGGTATAAGTA+TGG | + | chr5.1:19740315-19740334 | MS.gene97746:CDS | 30.0% | |
| TGTTATGAATGATGAGTTTG+AGG | + | chr5.1:19739055-19739074 | MS.gene97746:CDS | 30.0% | |
| TTAAAACTCTTATTACACCC+CGG | - | chr5.1:19739023-19739042 | None:intergenic | 30.0% | |
| ! | CTTTTAACGTGATGATAAGT+TGG | + | chr5.1:19740020-19740039 | MS.gene97746:CDS | 30.0% |
| ! | GAAAAGGATGAGATTTTGAA+GGG | + | chr5.1:19739353-19739372 | MS.gene97746:CDS | 30.0% |
| ! | TAGGGTTTAAAATACCTTGT+GGG | + | chr5.1:19740092-19740111 | MS.gene97746:CDS | 30.0% |
| ! | TGAAAAGGATGAGATTTTGA+AGG | + | chr5.1:19739352-19739371 | MS.gene97746:CDS | 30.0% |
| ! | TTAGGGTTTAAAATACCTTG+TGG | + | chr5.1:19740091-19740110 | MS.gene97746:CDS | 30.0% |
| !! | AGTTTGAGAGAAAGTATTTG+GGG | + | chr5.1:19738982-19739001 | MS.gene97746:CDS | 30.0% |
| !! | GAGTTTGAGAGAAAGTATTT+GGG | + | chr5.1:19738981-19739000 | MS.gene97746:CDS | 30.0% |
| !! | GATGAGATTTTTAAGGGTAA+TGG | + | chr5.1:19739173-19739192 | MS.gene97746:CDS | 30.0% |
| !! | TGAGTTTGAGAGAAAGTATT+TGG | + | chr5.1:19738980-19738999 | MS.gene97746:CDS | 30.0% |
| !! | TGATTTTGATAAAGATCGAG+TGG | + | chr5.1:19739895-19739914 | MS.gene97746:CDS | 30.0% |
| !!! | GTTTTAAGAAAGGTCAAGTT+TGG | + | chr5.1:19739924-19739943 | MS.gene97746:CDS | 30.0% |
| AAAATGGAGAAGAAGCTTGA+GGG | + | chr5.1:19739605-19739624 | MS.gene97746:CDS | 35.0% | |
| AAGTATGGCATATCTTGAGA+AGG | + | chr5.1:19740330-19740349 | MS.gene97746:CDS | 35.0% | |
| ACAAGTTACAGTGAGATGAA+TGG | + | chr5.1:19740304-19740323 | MS.gene97746:CDS | 35.0% | |
| CTAAACCAAAGATGGTTGTT+GGG | + | chr5.1:19739489-19739508 | MS.gene97746:CDS | 35.0% | |
| GAAGAAGAACATGAAGAAGA+AGG | + | chr5.1:19739124-19739143 | MS.gene97746:CDS | 35.0% | |
| GAAGAAGATGAATGGGAAAA+TGG | + | chr5.1:19739325-19739344 | MS.gene97746:CDS | 35.0% | |
| GAAGACATTTACTGAACCTA+TGG | - | chr5.1:19740143-19740162 | None:intergenic | 35.0% | |
| GACTGCTTGTAATACTTGTA+AGG | + | chr5.1:19738950-19738969 | MS.gene97746:CDS | 35.0% | |
| GGTTGGATTTCCATAACAAT+GGG | + | chr5.1:19740041-19740060 | MS.gene97746:CDS | 35.0% | |
| GTTGGATTTCCATAACAATG+GGG | + | chr5.1:19740042-19740061 | MS.gene97746:CDS | 35.0% | |
| TATGAATGATGAGTTTGAGG+AGG | + | chr5.1:19739058-19739077 | MS.gene97746:CDS | 35.0% | |
| TCAATCAGAACATATTGCCT+CGG | - | chr5.1:19739980-19739999 | None:intergenic | 35.0% | |
| TCTAAACCAAAGATGGTTGT+TGG | + | chr5.1:19739488-19739507 | MS.gene97746:CDS | 35.0% | |
| TGGATTCTGTGAAGAGAAAA+GGG | + | chr5.1:19739711-19739730 | MS.gene97746:CDS | 35.0% | |
| TGGTTGGATTTCCATAACAA+TGG | + | chr5.1:19740040-19740059 | MS.gene97746:CDS | 35.0% | |
| TGTTTAAGAGACAAGAGAGT+GGG | + | chr5.1:19740371-19740390 | MS.gene97746:CDS | 35.0% | |
| TTGGATTCTGTGAAGAGAAA+AGG | + | chr5.1:19739710-19739729 | MS.gene97746:CDS | 35.0% | |
| ! | AACATGAAGAAGAAGGGTAT+TGG | + | chr5.1:19739131-19739150 | MS.gene97746:CDS | 35.0% |
| ! | ATGATGAAGTGGGTATTGTT+GGG | + | chr5.1:19739420-19739439 | MS.gene97746:CDS | 35.0% |
| ! | GAGATTTAAAGTTGCCAAGA+AGG | + | chr5.1:19740114-19740133 | MS.gene97746:CDS | 35.0% |
| ! | GGGGTGTAATAAGAGTTTTA+AGG | + | chr5.1:19739022-19739041 | MS.gene97746:CDS | 35.0% |
| ! | TGAAAAAGGGGAGAGTTTTA+AGG | + | chr5.1:19739208-19739227 | MS.gene97746:CDS | 35.0% |
| ! | TTTAAGGGTAATGGTGAAGT+GGG | + | chr5.1:19739182-19739201 | MS.gene97746:CDS | 35.0% |
| ! | TTTAAGGGTGATGATGAAGT+GGG | + | chr5.1:19739410-19739429 | MS.gene97746:CDS | 35.0% |
| !! | AAGAAGGGTATTGGGAAAAT+GGG | + | chr5.1:19739140-19739159 | MS.gene97746:CDS | 35.0% |
| !! | ACATGAAGAAGAAGGGTATT+GGG | + | chr5.1:19739132-19739151 | MS.gene97746:CDS | 35.0% |
| !! | GATGAGATTTTGAAGGGTAA+TGG | + | chr5.1:19739359-19739378 | MS.gene97746:CDS | 35.0% |
| !! | TAACGTGATGATAAGTTGGT+TGG | + | chr5.1:19740024-19740043 | MS.gene97746:CDS | 35.0% |
| !! | TTTTAAGGGTAATGGTGAAG+TGG | + | chr5.1:19739181-19739200 | MS.gene97746:CDS | 35.0% |
| !! | TTTTAAGGGTGATGATGAAG+TGG | + | chr5.1:19739409-19739428 | MS.gene97746:CDS | 35.0% |
| !!! | CTGAAGCAGTTTTGATTGAT+GGG | + | chr5.1:19739234-19739253 | MS.gene97746:CDS | 35.0% |
| AAATCTGAAGGAAGTGAAGC+CGG | - | chr5.1:19740517-19740536 | None:intergenic | 40.0% | |
| AGAGGAATTAGAGGTTATGG+CGG | + | chr5.1:19739766-19739785 | MS.gene97746:CDS | 40.0% | |
| AGTCATGCGGTTAGATTTCT+TGG | + | chr5.1:19740394-19740413 | MS.gene97746:CDS | 40.0% | |
| ATCCTAAGAAGGGTTCAGTT+TGG | + | chr5.1:19740212-19740231 | MS.gene97746:CDS | 40.0% | |
| ATTAGAGGTTATGGCAGTTG+CGG | + | chr5.1:19739859-19739878 | MS.gene97746:CDS | 40.0% | |
| CTTCATCAAGAGATGGTGAA+GGG | + | chr5.1:19739566-19739585 | MS.gene97746:CDS | 40.0% | |
| GAAAATGGAGAAGAAGCTTG+AGG | + | chr5.1:19739604-19739623 | MS.gene97746:CDS | 40.0% | |
| GAGAAAGCTTCATCAAGAGA+TGG | + | chr5.1:19739559-19739578 | MS.gene97746:CDS | 40.0% | |
| GATGGTGAAGGGAAAAGAAA+AGG | + | chr5.1:19739577-19739596 | MS.gene97746:CDS | 40.0% | |
| GATTTCCATAACAATGGGGA+TGG | + | chr5.1:19740046-19740065 | MS.gene97746:CDS | 40.0% | |
| GCAACTTTAAATCTCCCACA+AGG | - | chr5.1:19740109-19740128 | None:intergenic | 40.0% | |
| GCATATCTTGAGAAGGTTGA+TGG | + | chr5.1:19740337-19740356 | MS.gene97746:CDS | 40.0% | |
| GTCATGCGGTTAGATTTCTT+GGG | + | chr5.1:19740395-19740414 | MS.gene97746:CDS | 40.0% | |
| GTGTTTAAGAGACAAGAGAG+TGG | + | chr5.1:19740370-19740389 | MS.gene97746:CDS | 40.0% | |
| TACTAGTGGAGAGGAATTAG+AGG | + | chr5.1:19739757-19739776 | MS.gene97746:CDS | 40.0% | |
| TCCTAAGAAGGGTTCAGTTT+GGG | + | chr5.1:19740213-19740232 | MS.gene97746:CDS | 40.0% | |
| TCTTTCCATCCCCATTGTTA+TGG | - | chr5.1:19740054-19740073 | None:intergenic | 40.0% | |
| TGGAGAGGAATTAGAGGTTA+TGG | + | chr5.1:19739763-19739782 | MS.gene97746:CDS | 40.0% | |
| TTGATAAAGATCGAGTGGAG+AGG | + | chr5.1:19739900-19739919 | MS.gene97746:CDS | 40.0% | |
| ! | ATTAGAAGGTATGGTGGTTG+CGG | + | chr5.1:19739685-19739704 | MS.gene97746:CDS | 40.0% |
| ! | GATGATGAAGTGGGTATTGT+TGG | + | chr5.1:19739419-19739438 | MS.gene97746:CDS | 40.0% |
| ! | GCGAAAAAGGGATGACTTTT+TGG | + | chr5.1:19738928-19738947 | MS.gene97746:CDS | 40.0% |
| ! | GTGTATGATGGTGATGATGA+TGG | + | chr5.1:19739950-19739969 | MS.gene97746:CDS | 40.0% |
| ! | TTGAAGGGTAATGGTGAAGT+GGG | + | chr5.1:19739368-19739387 | MS.gene97746:CDS | 40.0% |
| ! | TTTGAAGGGTAATGGTGAAG+TGG | + | chr5.1:19739367-19739386 | MS.gene97746:CDS | 40.0% |
| !! | GAAGAAGGGTATTGGGAAAA+TGG | + | chr5.1:19739139-19739158 | MS.gene97746:CDS | 40.0% |
| !! | GGAGAGTTCTAAACCAAAGA+TGG | + | chr5.1:19739481-19739500 | MS.gene97746:CDS | 40.0% |
| !! | GTGAAGTGGGTTGTGAAAAA+GGG | + | chr5.1:19739195-19739214 | MS.gene97746:CDS | 40.0% |
| !! | TGAAGTGGGTTGTGAAAAAG+GGG | + | chr5.1:19739196-19739215 | MS.gene97746:CDS | 40.0% |
| !! | TGGGAAAATGGGTTGTGAAA+AGG | + | chr5.1:19739151-19739170 | MS.gene97746:CDS | 40.0% |
| !!! | AGTTTTGATTGATGGGTCTG+AGG | + | chr5.1:19739241-19739260 | MS.gene97746:CDS | 40.0% |
| !!! | GCTGAAGCAGTTTTGATTGA+TGG | + | chr5.1:19739233-19739252 | MS.gene97746:CDS | 40.0% |
| !!! | GTGGAGAGGAGTTTTAAGAA+AGG | + | chr5.1:19739914-19739933 | MS.gene97746:CDS | 40.0% |
| AATTCATGATCCTCGTCGCA+AGG | - | chr5.1:19740469-19740488 | None:intergenic | 45.0% | |
| ACTAGTGGAGGGGAATTAGA+AGG | + | chr5.1:19739671-19739690 | MS.gene97746:CDS | 45.0% | |
| ATTAGAGGTTATGGCGGTTG+CGG | + | chr5.1:19739772-19739791 | MS.gene97746:CDS | 45.0% | |
| ATTCATGATCCTCGTCGCAA+GGG | - | chr5.1:19740468-19740487 | None:intergenic | 45.0% | |
| CAAGTTTGGGCTGTGTATGA+TGG | + | chr5.1:19739938-19739957 | MS.gene97746:CDS | 45.0% | |
| CGGATCCTGTGAAGAGAAAA+GGG | + | chr5.1:19739798-19739817 | MS.gene97746:CDS | 45.0% | |
| GAAAAGGGTTGAGATCTGAG+AGG | + | chr5.1:19739726-19739745 | MS.gene97746:CDS | 45.0% | |
| GCATATGGATACTAGTGGAG+AGG | + | chr5.1:19739835-19739854 | MS.gene97746:CDS | 45.0% | |
| GCTTCATCAAGAGATGGTGA+AGG | + | chr5.1:19739565-19739584 | MS.gene97746:CDS | 45.0% | |
| GGGGATGGAAAGATAGTTAG+TGG | + | chr5.1:19740061-19740080 | MS.gene97746:CDS | 45.0% | |
| GGTGAAGGGAAAAGAAAAGG+AGG | + | chr5.1:19739580-19739599 | MS.gene97746:CDS | 45.0% | |
| TCACTCCCAACAACCATCTT+TGG | - | chr5.1:19739497-19739516 | None:intergenic | 45.0% | |
| TCGGATCCTGTGAAGAGAAA+AGG | + | chr5.1:19739797-19739816 | MS.gene97746:CDS | 45.0% | |
| TGAACCTATGGAAGCCTTCT+TGG | - | chr5.1:19740131-19740150 | None:intergenic | 45.0% | |
| TGCGGTTAGATTTCTTGGGA+AGG | + | chr5.1:19740399-19740418 | MS.gene97746:CDS | 45.0% | |
| TGGAGGGGAATTAGAAGGTA+TGG | + | chr5.1:19739676-19739695 | MS.gene97746:CDS | 45.0% | |
| TTTCTCATCAGATTCCTGCG+CGG | + | chr5.1:19740437-19740456 | MS.gene97746:CDS | 45.0% | |
| ! | AGGGGAATTAGAAGGTATGG+TGG | + | chr5.1:19739679-19739698 | MS.gene97746:CDS | 45.0% |
| ! | CTCAACCCTTTTCTCTTCAC+AGG | - | chr5.1:19739719-19739738 | None:intergenic | 45.0% |
| ! | CTCATGTTGTCGATTGCGAT+CGG | + | chr5.1:19740164-19740183 | MS.gene97746:CDS | 45.0% |
| ! | GAGAGGCATATGGATACTAG+TGG | + | chr5.1:19739830-19739849 | MS.gene97746:CDS | 45.0% |
| ! | GTTGAGATCTGAGAGGCATA+TGG | + | chr5.1:19739820-19739839 | MS.gene97746:CDS | 45.0% |
| ! | TCATGTTGTCGATTGCGATC+GGG | + | chr5.1:19740165-19740184 | MS.gene97746:CDS | 45.0% |
| ! | TGGGTATTGTTGGGAGATTG+AGG | + | chr5.1:19739429-19739448 | MS.gene97746:CDS | 45.0% |
| !! | GGTGAAGTGGGTTGTGAAAA+AGG | + | chr5.1:19739194-19739213 | MS.gene97746:CDS | 45.0% |
| !! | GGTGAAGTGGGTTGTGAAAA+TGG | + | chr5.1:19739194-19739213 | MS.gene97746:CDS | 45.0% |
| ACAAGAGAGTGGGAGTCATG+CGG | + | chr5.1:19740381-19740400 | MS.gene97746:CDS | 50.0% | |
| AGAAGCTTGAGGGTTCTGTG+AGG | + | chr5.1:19739615-19739634 | MS.gene97746:CDS | 50.0% | |
| AGACTGTTGGGAGCTTGATC+CGG | + | chr5.1:19740495-19740514 | MS.gene97746:CDS | 50.0% | |
| AGGGTTCTGTGAGGAGAAAG+GGG | + | chr5.1:19739624-19739643 | MS.gene97746:CDS | 50.0% | |
| AGGTATGGTGGTTGCGGATT+TGG | + | chr5.1:19739691-19739710 | MS.gene97746:CDS | 50.0% | |
| AGTTTGGGCGCTTTACAGTG+AGG | + | chr5.1:19740228-19740247 | MS.gene97746:CDS | 50.0% | |
| ATTGAGGAAGAGAACGCGGT+CGG | + | chr5.1:19739445-19739464 | MS.gene97746:CDS | 50.0% | |
| GAGAGGCAAGTGGATACTAG+TGG | + | chr5.1:19739743-19739762 | MS.gene97746:CDS | 50.0% | |
| GAGGGTTCTGTGAGGAGAAA+GGG | + | chr5.1:19739623-19739642 | MS.gene97746:CDS | 50.0% | |
| GATGGTTGTTGGGAGTGAAG+AGG | + | chr5.1:19739499-19739518 | MS.gene97746:CDS | 50.0% | |
| GCAAGTGGATACTAGTGGAG+AGG | + | chr5.1:19739748-19739767 | MS.gene97746:CDS | 50.0% | |
| GCCCAAACTGAACCCTTCTT+AGG | - | chr5.1:19740217-19740236 | None:intergenic | 50.0% | |
| GGAATAAGCTTGTCTGTCCG+GGG | + | chr5.1:19739003-19739022 | MS.gene97746:CDS | 50.0% | |
| GGAGATTGAGGAAGAGAACG+CGG | + | chr5.1:19739441-19739460 | MS.gene97746:CDS | 50.0% | |
| GGGAATAAGCTTGTCTGTCC+GGG | + | chr5.1:19739002-19739021 | MS.gene97746:CDS | 50.0% | |
| GGGGAATAAGCTTGTCTGTC+CGG | + | chr5.1:19739001-19739020 | MS.gene97746:CDS | 50.0% | |
| GGTTATGGCAGTTGCGGATT+CGG | + | chr5.1:19739865-19739884 | MS.gene97746:CDS | 50.0% | |
| GTTGAGATCTGAGAGGCAAG+TGG | + | chr5.1:19739733-19739752 | MS.gene97746:CDS | 50.0% | |
| GTTGCCAAGAAGGCTTCCAT+AGG | + | chr5.1:19740124-19740143 | MS.gene97746:CDS | 50.0% | |
| TGAGGGTTCTGTGAGGAGAA+AGG | + | chr5.1:19739622-19739641 | MS.gene97746:CDS | 50.0% | |
| !! | GTGATGATGATGGAATGCCG+AGG | + | chr5.1:19739960-19739979 | MS.gene97746:CDS | 50.0% |
| AGGCACAGGGATACTAGTGG+AGG | + | chr5.1:19739659-19739678 | MS.gene97746:CDS | 55.0% | |
| AGTGAGGCGAGTCTTGATGC+AGG | + | chr5.1:19740244-19740263 | MS.gene97746:CDS | 55.0% | |
| GAAAGGGGTCGAGACTTGAG+AGG | + | chr5.1:19739639-19739658 | MS.gene97746:CDS | 55.0% | |
| GCACAGGGATACTAGTGGAG+GGG | + | chr5.1:19739661-19739680 | MS.gene97746:CDS | 55.0% | |
| GCGAGTCTTGATGCAGGTGA+GGG | + | chr5.1:19740250-19740269 | MS.gene97746:CDS | 55.0% | |
| GGCACAGGGATACTAGTGGA+GGG | + | chr5.1:19739660-19739679 | MS.gene97746:CDS | 55.0% | |
| GGTTATGGCGGTTGCGGATT+CGG | + | chr5.1:19739778-19739797 | MS.gene97746:CDS | 55.0% | |
| ! | GAGAGGCACAGGGATACTAG+TGG | + | chr5.1:19739656-19739675 | MS.gene97746:CDS | 55.0% |
| ! | GTCGAGACTTGAGAGGCACA+GGG | + | chr5.1:19739646-19739665 | MS.gene97746:CDS | 55.0% |
| AGGAAGAGAACGCGGTCGGT+TGG | + | chr5.1:19739449-19739468 | MS.gene97746:CDS | 60.0% | |
| GAAGAGAACGCGGTCGGTTG+GGG | + | chr5.1:19739451-19739470 | MS.gene97746:CDS | 60.0% | |
| GCGGAAATTCCCTTGCGACG+AGG | + | chr5.1:19740456-19740475 | MS.gene97746:CDS | 60.0% | |
| GGAAGAGAACGCGGTCGGTT+GGG | + | chr5.1:19739450-19739469 | MS.gene97746:CDS | 60.0% | |
| GGCGAGTCTTGATGCAGGTG+AGG | + | chr5.1:19740249-19740268 | MS.gene97746:CDS | 60.0% | |
| TCGCAAGGGAATTTCCGCGC+AGG | - | chr5.1:19740454-19740473 | None:intergenic | 60.0% | |
| ! | GGTCGAGACTTGAGAGGCAC+AGG | + | chr5.1:19739645-19739664 | MS.gene97746:CDS | 60.0% |
| ! | GCGGTCGGTTGGGGAGGTTT+TGG | + | chr5.1:19739460-19739479 | MS.gene97746:CDS | 65.0% |
| GAGAACGCGGTCGGTTGGGG+AGG | + | chr5.1:19739454-19739473 | MS.gene97746:CDS | 70.0% | |
| TTGCGATCGGGCAGCGCGCG+AGG | + | chr5.1:19740177-19740196 | MS.gene97746:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 19738924 | 19740564 | 19738924 | ID=MS.gene97746 |
| chr5.1 | mRNA | 19738924 | 19740564 | 19738924 | ID=MS.gene97746.t1;Parent=MS.gene97746 |
| chr5.1 | exon | 19738924 | 19740564 | 19738924 | ID=MS.gene97746.t1.exon1;Parent=MS.gene97746.t1 |
| chr5.1 | CDS | 19738924 | 19740564 | 19738924 | ID=cds.MS.gene97746.t1;Parent=MS.gene97746.t1 |
| Gene Sequence |
| Protein sequence |
