Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059050.t1 | XP_004487684.1 | 87 | 46 | 6 | 0 | 29 | 74 | 349 | 394 | 5.60E-12 | 82.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059050.t1 | P21218 | 80.4 | 46 | 9 | 0 | 29 | 74 | 351 | 396 | 1.5e-13 | 79.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059050.t1 | A0A072VAY8 | 87.0 | 46 | 6 | 0 | 29 | 74 | 349 | 394 | 4.1e-12 | 82.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050317 | MS.gene059050 | 0.807549 | 4.79E-50 | -1.69E-46 |
| MS.gene050941 | MS.gene059050 | 0.800759 | 1.24E-48 | -1.69E-46 |
| MS.gene051184 | MS.gene059050 | 0.807958 | 3.92E-50 | -1.69E-46 |
| MS.gene051756 | MS.gene059050 | 0.800086 | 1.70E-48 | -1.69E-46 |
| MS.gene051831 | MS.gene059050 | 0.801299 | 9.61E-49 | -1.69E-46 |
| MS.gene053381 | MS.gene059050 | 0.818478 | 1.92E-52 | -1.69E-46 |
| MS.gene05344 | MS.gene059050 | -0.816171 | 6.34E-52 | -1.69E-46 |
| MS.gene056787 | MS.gene059050 | 0.82517 | 5.42E-54 | -1.69E-46 |
| MS.gene056849 | MS.gene059050 | 0.805059 | 1.60E-49 | -1.69E-46 |
| MS.gene057999 | MS.gene059050 | 0.801248 | 9.85E-49 | -1.69E-46 |
| MS.gene059050 | MS.gene059360 | 0.808906 | 2.46E-50 | -1.69E-46 |
| MS.gene059050 | MS.gene06131 | 0.809671 | 1.69E-50 | -1.69E-46 |
| MS.gene059050 | MS.gene061958 | 0.844847 | 5.87E-59 | -1.69E-46 |
| MS.gene059050 | MS.gene062117 | 0.826212 | 3.07E-54 | -1.69E-46 |
| MS.gene059050 | MS.gene064717 | 0.831411 | 1.70E-55 | -1.69E-46 |
| MS.gene059050 | MS.gene066221 | 0.825072 | 5.72E-54 | -1.69E-46 |
| MS.gene059050 | MS.gene066426 | 0.800124 | 1.67E-48 | -1.69E-46 |
| MS.gene059050 | MS.gene067857 | 0.805773 | 1.14E-49 | -1.69E-46 |
| MS.gene059050 | MS.gene069225 | 0.826268 | 2.98E-54 | -1.69E-46 |
| MS.gene059050 | MS.gene070222 | 0.805359 | 1.39E-49 | -1.69E-46 |
| MS.gene059050 | MS.gene07608 | 0.820992 | 5.12E-53 | -1.69E-46 |
| MS.gene059050 | MS.gene23078 | 0.815263 | 1.01E-51 | -1.69E-46 |
| MS.gene059050 | MS.gene24413 | 0.814044 | 1.88E-51 | -1.69E-46 |
| MS.gene059050 | MS.gene24597 | 0.802826 | 4.67E-49 | -1.69E-46 |
| MS.gene059050 | MS.gene25942 | 0.800498 | 1.40E-48 | -1.69E-46 |
| MS.gene059050 | MS.gene26584 | 0.830198 | 3.36E-55 | -1.69E-46 |
| MS.gene059050 | MS.gene28621 | 0.811122 | 8.20E-51 | -1.69E-46 |
| MS.gene059050 | MS.gene29719 | 0.812085 | 5.06E-51 | -1.69E-46 |
| MS.gene059050 | MS.gene36124 | 0.801827 | 7.49E-49 | -1.69E-46 |
| MS.gene059050 | MS.gene37988 | 0.803779 | 2.96E-49 | -1.69E-46 |
| MS.gene059050 | MS.gene38145 | 0.823315 | 1.48E-53 | -1.69E-46 |
| MS.gene059050 | MS.gene38262 | 0.801241 | 9.88E-49 | -1.69E-46 |
| MS.gene059050 | MS.gene38786 | 0.830745 | 2.47E-55 | -1.69E-46 |
| MS.gene059050 | MS.gene39124 | 0.81025 | 1.27E-50 | -1.69E-46 |
| MS.gene059050 | MS.gene39222 | 0.831524 | 1.59E-55 | -1.69E-46 |
| MS.gene059050 | MS.gene41775 | 0.821504 | 3.90E-53 | -1.69E-46 |
| MS.gene059050 | MS.gene42128 | 0.806499 | 7.99E-50 | -1.69E-46 |
| MS.gene059050 | MS.gene42295 | 0.8642 | 1.44E-64 | -1.69E-46 |
| MS.gene059050 | MS.gene43322 | 0.800699 | 1.27E-48 | -1.69E-46 |
| MS.gene059050 | MS.gene43324 | 0.808606 | 2.85E-50 | -1.69E-46 |
| MS.gene059050 | MS.gene46355 | 0.80104 | 1.09E-48 | -1.69E-46 |
| MS.gene059050 | MS.gene46447 | 0.817269 | 3.60E-52 | -1.69E-46 |
| MS.gene059050 | MS.gene47818 | 0.80637 | 8.50E-50 | -1.69E-46 |
| MS.gene059050 | MS.gene47995 | 0.805746 | 1.15E-49 | -1.69E-46 |
| MS.gene059050 | MS.gene48283 | 0.821128 | 4.76E-53 | -1.69E-46 |
| MS.gene059050 | MS.gene48393 | -0.82292 | 1.83E-53 | -1.69E-46 |
| MS.gene059050 | MS.gene49816 | 0.841726 | 3.99E-58 | -1.69E-46 |
| MS.gene059050 | MS.gene50200 | 0.818515 | 1.88E-52 | -1.69E-46 |
| MS.gene059050 | MS.gene50365 | 0.803513 | 3.36E-49 | -1.69E-46 |
| MS.gene059050 | MS.gene51557 | 0.842692 | 2.21E-58 | -1.69E-46 |
| MS.gene059050 | MS.gene51920 | 0.80901 | 2.34E-50 | -1.69E-46 |
| MS.gene059050 | MS.gene54163 | 0.810255 | 1.26E-50 | -1.69E-46 |
| MS.gene059050 | MS.gene55282 | 0.813162 | 2.94E-51 | -1.69E-46 |
| MS.gene059050 | MS.gene55544 | 0.805626 | 1.22E-49 | -1.69E-46 |
| MS.gene059050 | MS.gene58438 | 0.812877 | 3.40E-51 | -1.69E-46 |
| MS.gene059050 | MS.gene58616 | 0.804838 | 1.78E-49 | -1.69E-46 |
| MS.gene059050 | MS.gene59207 | 0.818283 | 2.12E-52 | -1.69E-46 |
| MS.gene059050 | MS.gene60300 | 0.813964 | 1.96E-51 | -1.69E-46 |
| MS.gene059050 | MS.gene60372 | 0.862715 | 4.16E-64 | -1.69E-46 |
| MS.gene059050 | MS.gene60374 | 0.823873 | 1.10E-53 | -1.69E-46 |
| MS.gene059050 | MS.gene65518 | 0.825742 | 3.97E-54 | -1.69E-46 |
| MS.gene059050 | MS.gene67107 | 0.812036 | 5.19E-51 | -1.69E-46 |
| MS.gene059050 | MS.gene67269 | 0.802424 | 5.65E-49 | -1.69E-46 |
| MS.gene059050 | MS.gene69442 | 0.835675 | 1.46E-56 | -1.69E-46 |
| MS.gene059050 | MS.gene70530 | 0.803502 | 3.38E-49 | -1.69E-46 |
| MS.gene059050 | MS.gene71547 | 0.836893 | 7.17E-57 | -1.69E-46 |
| MS.gene059050 | MS.gene72312 | 0.811311 | 7.46E-51 | -1.69E-46 |
| MS.gene059050 | MS.gene72933 | 0.834921 | 2.27E-56 | -1.69E-46 |
| MS.gene059050 | MS.gene74237 | 0.820209 | 7.74E-53 | -1.69E-46 |
| MS.gene059050 | MS.gene74407 | 0.805739 | 1.15E-49 | -1.69E-46 |
| MS.gene059050 | MS.gene74900 | 0.80064 | 1.31E-48 | -1.69E-46 |
| MS.gene059050 | MS.gene77649 | 0.815811 | 7.64E-52 | -1.69E-46 |
| MS.gene059050 | MS.gene81055 | 0.802947 | 4.41E-49 | -1.69E-46 |
| MS.gene059050 | MS.gene81141 | 0.815647 | 8.31E-52 | -1.69E-46 |
| MS.gene059050 | MS.gene81285 | 0.808396 | 3.16E-50 | -1.69E-46 |
| MS.gene059050 | MS.gene81715 | 0.81703 | 4.07E-52 | -1.69E-46 |
| MS.gene059050 | MS.gene84672 | 0.81551 | 8.91E-52 | -1.69E-46 |
| MS.gene059050 | MS.gene85109 | 0.803556 | 3.30E-49 | -1.69E-46 |
| MS.gene059050 | MS.gene85487 | 0.823481 | 1.35E-53 | -1.69E-46 |
| MS.gene059050 | MS.gene86315 | 0.808289 | 3.33E-50 | -1.69E-46 |
| MS.gene059050 | MS.gene87924 | 0.814229 | 1.71E-51 | -1.69E-46 |
| MS.gene059050 | MS.gene89188 | 0.808489 | 3.02E-50 | -1.69E-46 |
| MS.gene059050 | MS.gene89712 | 0.80868 | 2.75E-50 | -1.69E-46 |
| MS.gene059050 | MS.gene90119 | 0.817845 | 2.67E-52 | -1.69E-46 |
| MS.gene059050 | MS.gene90442 | 0.809218 | 2.11E-50 | -1.69E-46 |
| MS.gene059050 | MS.gene90510 | 0.810529 | 1.10E-50 | -1.69E-46 |
| MS.gene059050 | MS.gene90882 | 0.831613 | 1.51E-55 | -1.69E-46 |
| MS.gene059050 | MS.gene90965 | 0.820735 | 5.86E-53 | -1.69E-46 |
| MS.gene059050 | MS.gene93983 | 0.810155 | 1.33E-50 | -1.69E-46 |
| MS.gene059050 | MS.gene94183 | 0.800083 | 1.70E-48 | -1.69E-46 |
| MS.gene059050 | MS.gene96690 | 0.827306 | 1.68E-54 | -1.69E-46 |
| MS.gene059050 | MS.gene97896 | 0.80004 | 1.74E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059050.t1 | MTR_2g079710 | 88.636 | 44 | 5 | 0 | 29 | 72 | 349 | 392 | 4.54e-17 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059050.t1 | AT5G54190 | 80.435 | 46 | 9 | 0 | 29 | 74 | 234 | 279 | 2.65e-16 | 79.3 |
| MS.gene059050.t1 | AT5G54190 | 80.435 | 46 | 9 | 0 | 29 | 74 | 355 | 400 | 5.01e-16 | 80.1 |
| MS.gene059050.t1 | AT4G27440 | 80.435 | 46 | 9 | 0 | 29 | 74 | 351 | 396 | 6.38e-16 | 79.7 |
| MS.gene059050.t1 | AT4G27440 | 80.435 | 46 | 9 | 0 | 29 | 74 | 351 | 396 | 6.38e-16 | 79.7 |
| MS.gene059050.t1 | AT1G03630 | 69.565 | 46 | 14 | 0 | 29 | 74 | 351 | 396 | 1.42e-12 | 69.3 |
| MS.gene059050.t1 | AT1G03630 | 69.565 | 46 | 14 | 0 | 29 | 74 | 349 | 394 | 1.42e-12 | 69.3 |
Find 121 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCAGCCTCTTGCTTCTTCT+TGG | 0.230176 | 2.4:+55935731 | None:intergenic |
| TAACAAAATATGGTGTTTAC+TGG | 0.285847 | 2.4:-55945542 | MS.gene059050:CDS |
| GGGATTTAATCAATTAATAA+AGG | 0.286639 | 2.4:-55945400 | MS.gene059050:CDS |
| CGCAAGGTGTGGGAGGTTAA+TGG | 0.290751 | 2.4:-55945450 | MS.gene059050:CDS |
| GATCCAAGCTTAACAAAATA+TGG | 0.292118 | 2.4:-55945552 | MS.gene059050:CDS |
| AGTCAAGTTCTTATCCAAAC+AGG | 0.335888 | 2.4:-55945684 | MS.gene059050:CDS |
| CAATGTTATTTACCCCTGTT+TGG | 0.345313 | 2.4:+55945670 | None:intergenic |
| AAACATTGAACAGCAGTTAC+TGG | 0.360556 | 2.4:-55944346 | MS.gene059050:intron |
| AGAGGGGAGCTCTAAACTTA+TGG | 0.373636 | 2.4:-55945337 | MS.gene059050:CDS |
| ACCACTACACCCTTGAAGAT+TGG | 0.387911 | 2.4:+55944319 | None:intergenic |
| GGTTGATTGGACGGATCAAT+TGG | 0.393142 | 2.4:-55937787 | MS.gene059050:CDS |
| GGTTGATTGGACGGATCAAT+TGG | 0.393142 | 2.4:-55940103 | MS.gene059050:CDS |
| ACCTCTACGGCCTTTACTCT+TGG | 0.399197 | 2.4:+55944720 | None:intergenic |
| CGCCAGATCAAGTGGTTCAA+TGG | 0.411365 | 2.4:-55942113 | MS.gene059050:CDS |
| AACCATTGAACCACTTGATC+TGG | 0.414296 | 2.4:+55942111 | None:intergenic |
| GCAAGGTGTGGGAGGTTAAT+GGG | 0.431523 | 2.4:-55945449 | MS.gene059050:CDS |
| CGGTCCTTCCCAGTCATGTA+CGG | 0.432714 | 2.4:+55936469 | None:intergenic |
| CGGTCCTTCCCAGTCATGTA+CGG | 0.432714 | 2.4:+55938435 | None:intergenic |
| CGGTCCTTCCCAGTCATGTA+CGG | 0.432714 | 2.4:+55938793 | None:intergenic |
| CGGTCCTTCCCAGTCATGTA+CGG | 0.432714 | 2.4:+55940751 | None:intergenic |
| CGGTCCTTCCCAGTCATGTA+CGG | 0.432714 | 2.4:+55941109 | None:intergenic |
| TGATGAATAAACAGCTTGTT+CGG | 0.436021 | 2.4:-55943756 | MS.gene059050:intron |
| AATATGGTGTTTACTGGAGC+TGG | 0.437642 | 2.4:-55945536 | MS.gene059050:CDS |
| TACTGGGAAGCCAATCTTCA+AGG | 0.438474 | 2.4:-55944329 | MS.gene059050:CDS |
| TTTATCAACCCGTACATGAC+TGG | 0.443937 | 2.4:-55936478 | MS.gene059050:CDS |
| TTTATCAACCCGTACATGAC+TGG | 0.443937 | 2.4:-55938444 | MS.gene059050:CDS |
| TTTATCAACCCGTACATGAC+TGG | 0.443937 | 2.4:-55938802 | MS.gene059050:CDS |
| TTTATCAACCCGTACATGAC+TGG | 0.443937 | 2.4:-55940760 | MS.gene059050:CDS |
| TTTATCAACCCGTACATGAC+TGG | 0.443937 | 2.4:-55941118 | MS.gene059050:CDS |
| TGCTGAGGAGGCACAACTAA+AGG | 0.451068 | 2.4:-55936509 | MS.gene059050:CDS |
| TGCTGAGGAGGCACAACTAA+AGG | 0.451068 | 2.4:-55940791 | MS.gene059050:CDS |
| TGCTGAGGAGGCACAACTAA+AGG | 0.451068 | 2.4:-55941149 | MS.gene059050:CDS |
| AGAGTAAAGGCCGTAGAGGT+TGG | 0.458900 | 2.4:-55944717 | MS.gene059050:CDS |
| AACAGATAGTACGGCGAGAA+TGG | 0.460010 | 2.4:-55942142 | MS.gene059050:intron |
| TGCTGACGAGGCACAACTAA+AGG | 0.463487 | 2.4:-55938475 | MS.gene059050:CDS |
| GAGTAAAGGCCGTAGAGGTT+GGG | 0.463520 | 2.4:-55944716 | MS.gene059050:CDS |
| AAGAAGCAAGAGGCTGCTGC+TGG | 0.465679 | 2.4:-55935726 | MS.gene059050:CDS |
| TGCAAAATCTTGTCGTTCAA+CGG | 0.467707 | 2.4:-55943718 | MS.gene059050:CDS |
| AAAGAAAGAGAAGAGAAAGT+TGG | 0.477792 | 2.4:-55935631 | MS.gene059050:CDS |
| CTTCTTGCTTGAATCAGCGT+TGG | 0.485532 | 2.4:+55935566 | None:intergenic |
| AACAGGTAGTACGGCGAGAA+TGG | 0.487422 | 2.4:-55937808 | MS.gene059050:intron |
| AACAGGTAGTACGGCGAGAA+TGG | 0.487422 | 2.4:-55940124 | MS.gene059050:intron |
| ATCTTCAAGGGTGTAGTGGT+TGG | 0.488119 | 2.4:-55944316 | MS.gene059050:CDS |
| AAGGCTGCAGAAATTACAAT+TGG | 0.493666 | 2.4:-55935678 | MS.gene059050:CDS |
| AGAAAGTTGGACCAGGAGGT+TGG | 0.507377 | 2.4:-55935618 | MS.gene059050:CDS |
| TCTTCAAGGGTGTAGTGGTT+GGG | 0.507778 | 2.4:-55944315 | MS.gene059050:CDS |
| GTAACATTCTTCGTGTAGCT+CGG | 0.511473 | 2.4:+55946041 | None:intergenic |
| GCTGAGGAGGCACAACTAAA+GGG | 0.515138 | 2.4:-55936508 | MS.gene059050:CDS |
| GCTGAGGAGGCACAACTAAA+GGG | 0.515138 | 2.4:-55940790 | MS.gene059050:CDS |
| GCTGAGGAGGCACAACTAAA+GGG | 0.515138 | 2.4:-55941148 | MS.gene059050:CDS |
| AACATTGAACAGCAGTTACT+GGG | 0.518054 | 2.4:-55944345 | MS.gene059050:intron |
| GTACGGCGAGAATGGTTGAT+TGG | 0.519543 | 2.4:-55937800 | MS.gene059050:CDS |
| GTACGGCGAGAATGGTTGAT+TGG | 0.519543 | 2.4:-55940116 | MS.gene059050:CDS |
| AGAGGCAAGTGGTGTAGAGA+AGG | 0.520951 | 2.4:-55945475 | MS.gene059050:CDS |
| TGTCATGAACTCCAACCTCC+TGG | 0.529422 | 2.4:+55935607 | None:intergenic |
| TGATGAGGAGCCAAGAGTAA+AGG | 0.531984 | 2.4:-55944730 | MS.gene059050:CDS |
| TAGAGAAGGCTCGCAAGGTG+TGG | 0.534550 | 2.4:-55945461 | MS.gene059050:CDS |
| CACTTGCCTCTTGAGATAGC+TGG | 0.535140 | 2.4:+55945487 | None:intergenic |
| AAGAAAGAGATAGAGACAGA+GGG | 0.539568 | 2.4:-55945354 | MS.gene059050:CDS |
| GGTCCTTCCCAGTCATGTAC+GGG | 0.540880 | 2.4:+55936470 | None:intergenic |
| GGTCCTTCCCAGTCATGTAC+GGG | 0.540880 | 2.4:+55938436 | None:intergenic |
| GGTCCTTCCCAGTCATGTAC+GGG | 0.540880 | 2.4:+55938794 | None:intergenic |
| GGTCCTTCCCAGTCATGTAC+GGG | 0.540880 | 2.4:+55940752 | None:intergenic |
| GGTCCTTCCCAGTCATGTAC+GGG | 0.540880 | 2.4:+55941110 | None:intergenic |
| GCTGACGAGGCACAACTAAA+GGG | 0.541584 | 2.4:-55938474 | MS.gene059050:CDS |
| ACGATCCTTCCCAACCTCTA+CGG | 0.562871 | 2.4:+55944707 | None:intergenic |
| GGCTGATACGCCAGATCAAG+TGG | 0.564016 | 2.4:-55942121 | MS.gene059050:CDS |
| GCCAATCTTCAAGGGTGTAG+TGG | 0.564789 | 2.4:-55944320 | MS.gene059050:CDS |
| TAATGAATAAACAGGTAGTA+CGG | 0.564872 | 2.4:-55937817 | MS.gene059050:intron |
| TAATGAATAAACAGGTAGTA+CGG | 0.564872 | 2.4:-55940133 | MS.gene059050:intron |
| GTCAAGTTCTTATCCAAACA+GGG | 0.564900 | 2.4:-55945683 | MS.gene059050:CDS |
| AAAGGTGAAAGAGAGAAGGA+TGG | 0.572756 | 2.4:-55945382 | MS.gene059050:CDS |
| TAATAAAGGTGAAAGAGAGA+AGG | 0.573535 | 2.4:-55945386 | MS.gene059050:CDS |
| TGATGAATAAACAGATAGTA+CGG | 0.573930 | 2.4:-55942151 | MS.gene059050:intron |
| GGCGAGAATGGTTGATTGGA+CGG | 0.578181 | 2.4:-55937796 | MS.gene059050:CDS |
| GGCGAGAATGGTTGATTGGA+CGG | 0.578181 | 2.4:-55940112 | MS.gene059050:CDS |
| TGGTGTAGAGAAGGCTCGCA+AGG | 0.581297 | 2.4:-55945466 | MS.gene059050:CDS |
| TTATCAACCCGTACATGACT+GGG | 0.582961 | 2.4:-55936477 | MS.gene059050:CDS |
| TTATCAACCCGTACATGACT+GGG | 0.582961 | 2.4:-55938443 | MS.gene059050:CDS |
| TTATCAACCCGTACATGACT+GGG | 0.582961 | 2.4:-55938801 | MS.gene059050:CDS |
| TTATCAACCCGTACATGACT+GGG | 0.582961 | 2.4:-55940759 | MS.gene059050:CDS |
| TTATCAACCCGTACATGACT+GGG | 0.582961 | 2.4:-55941117 | MS.gene059050:CDS |
| AGATGACATGGCTGTAGATA+AGG | 0.584278 | 2.4:-55935697 | MS.gene059050:CDS |
| CAAGGGTGTAGTGGTTGGGA+AGG | 0.587035 | 2.4:-55944311 | MS.gene059050:CDS |
| AGAGAAGGCTCGCAAGGTGT+GGG | 0.587119 | 2.4:-55945460 | MS.gene059050:CDS |
| ATGAACAGAAGTTGCTGAGG+AGG | 0.592310 | 2.4:-55936521 | MS.gene059050:intron |
| ATGAACAGAAGTTGCTGAGG+AGG | 0.592310 | 2.4:-55938833 | MS.gene059050:intron |
| ATGAACAGAAGTTGCTGAGG+AGG | 0.592310 | 2.4:-55940803 | MS.gene059050:intron |
| ATGAACAGAAGTTGCTGAGG+AGG | 0.592310 | 2.4:-55941161 | MS.gene059050:intron |
| GAAGAGAAAGTTGGACCAGG+AGG | 0.598678 | 2.4:-55935622 | MS.gene059050:CDS |
| ACTGGGAAGCCAATCTTCAA+GGG | 0.600221 | 2.4:-55944328 | MS.gene059050:CDS |
| GCCAAGAGTAAAGGCCGTAG+AGG | 0.606415 | 2.4:-55944721 | MS.gene059050:CDS |
| TGCTGGAGATGAAGATGACA+TGG | 0.609429 | 2.4:-55935709 | MS.gene059050:CDS |
| AGAGAAGAGAAAGTTGGACC+AGG | 0.612707 | 2.4:-55935625 | MS.gene059050:CDS |
| ATGAACAGAAGTTGCTGACG+AGG | 0.614609 | 2.4:-55938487 | MS.gene059050:intron |
| AGAAATTACAATTGGTGATG+CGG | 0.615510 | 2.4:-55935670 | MS.gene059050:CDS |
| TGAGGACCAGCTATCTCAAG+AGG | 0.618291 | 2.4:-55945493 | MS.gene059050:CDS |
| CTTCTTCTTGGATTTCCTCG+CGG | 0.619513 | 2.4:+55935743 | None:intergenic |
| ACAATGAACAGAAGTTGATG+AGG | 0.629868 | 2.4:-55944745 | MS.gene059050:intron |
| AATTACAATTGGTGATGCGG+AGG | 0.631424 | 2.4:-55935667 | MS.gene059050:CDS |
| AAAGGCCGTAGAGGTTGGGA+AGG | 0.635836 | 2.4:-55944712 | MS.gene059050:CDS |
| GAAGAAAGAGATAGAGACAG+AGG | 0.639373 | 2.4:-55945355 | MS.gene059050:CDS |
| GAAGGCTCGCAAGGTGTGGG+AGG | 0.649657 | 2.4:-55945457 | MS.gene059050:CDS |
| ACAATGAACAGAAGTTGCTG+AGG | 0.661744 | 2.4:-55936524 | MS.gene059050:intron |
| ACAATGAACAGAAGTTGCTG+AGG | 0.661744 | 2.4:-55938836 | MS.gene059050:intron |
| ACAATGAACAGAAGTTGCTG+AGG | 0.661744 | 2.4:-55940806 | MS.gene059050:intron |
| ACAATGAACAGAAGTTGCTG+AGG | 0.661744 | 2.4:-55941164 | MS.gene059050:intron |
| GAAATCCAAGAAGAAGCAAG+AGG | 0.664372 | 2.4:-55935736 | MS.gene059050:CDS |
| CAGCTATCTCAAGAGGCAAG+TGG | 0.664485 | 2.4:-55945486 | MS.gene059050:CDS |
| TCAAGTTCTTATCCAAACAG+GGG | 0.665162 | 2.4:-55945682 | MS.gene059050:intron |
| CAACCCGTACATGACTGGGA+AGG | 0.689196 | 2.4:-55936473 | MS.gene059050:CDS |
| CAACCCGTACATGACTGGGA+AGG | 0.689196 | 2.4:-55938439 | MS.gene059050:CDS |
| CAACCCGTACATGACTGGGA+AGG | 0.689196 | 2.4:-55938797 | MS.gene059050:CDS |
| CAACCCGTACATGACTGGGA+AGG | 0.689196 | 2.4:-55940755 | MS.gene059050:CDS |
| CAACCCGTACATGACTGGGA+AGG | 0.689196 | 2.4:-55941113 | MS.gene059050:CDS |
| GACGAGGCACAACTAAAGGG+CGG | 0.694092 | 2.4:-55938471 | MS.gene059050:CDS |
| GGAGGTTGGAGTTCATGACA+AGG | 0.700265 | 2.4:-55935604 | MS.gene059050:CDS |
| AGAAAGAGATAGAGACAGAG+GGG | 0.706103 | 2.4:-55945353 | MS.gene059050:CDS |
| GAGGAGGCACAACTAAAGGG+CGG | 0.707663 | 2.4:-55936505 | MS.gene059050:CDS |
| GAGGAGGCACAACTAAAGGG+CGG | 0.707663 | 2.4:-55940787 | MS.gene059050:CDS |
| GAGGAGGCACAACTAAAGGG+CGG | 0.707663 | 2.4:-55941145 | MS.gene059050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 55935554 | 55946100 | 55935554 | ID=MS.gene059050 |
| chr2.4 | mRNA | 55935554 | 55946100 | 55935554 | ID=MS.gene059050.t1;Parent=MS.gene059050 |
| chr2.4 | exon | 55946039 | 55946100 | 55946039 | ID=MS.gene059050.t1.exon1;Parent=MS.gene059050.t1 |
| chr2.4 | CDS | 55946039 | 55946100 | 55946039 | ID=cds.MS.gene059050.t1;Parent=MS.gene059050.t1 |
| chr2.4 | exon | 55945683 | 55945704 | 55945683 | ID=MS.gene059050.t1.exon2;Parent=MS.gene059050.t1 |
| chr2.4 | CDS | 55945683 | 55945704 | 55945683 | ID=cds.MS.gene059050.t1;Parent=MS.gene059050.t1 |
| chr2.4 | exon | 55945307 | 55945583 | 55945307 | ID=MS.gene059050.t1.exon3;Parent=MS.gene059050.t1 |
| chr2.4 | CDS | 55945307 | 55945583 | 55945307 | ID=cds.MS.gene059050.t1;Parent=MS.gene059050.t1 |
| chr2.4 | exon | 55944709 | 55944756 | 55944709 | ID=MS.gene059050.t1.exon4;Parent=MS.gene059050.t1 |
| chr2.4 | CDS | 55944709 | 55944756 | 55944709 | ID=cds.MS.gene059050.t1;Parent=MS.gene059050.t1 |
| chr2.4 | exon | 55944308 | 55944355 | 55944308 | ID=MS.gene059050.t1.exon5;Parent=MS.gene059050.t1 |
| chr2.4 | CDS | 55944308 | 55944355 | 55944308 | ID=cds.MS.gene059050.t1;Parent=MS.gene059050.t1 |
| chr2.4 | exon | 55943690 | 55943764 | 55943690 | ID=MS.gene059050.t1.exon6;Parent=MS.gene059050.t1 |
| chr2.4 | CDS | 55943690 | 55943764 | 55943690 | ID=cds.MS.gene059050.t1;Parent=MS.gene059050.t1 |
| chr2.4 | exon | 55942088 | 55942159 | 55942088 | ID=MS.gene059050.t1.exon7;Parent=MS.gene059050.t1 |
| chr2.4 | CDS | 55942088 | 55942159 | 55942088 | ID=cds.MS.gene059050.t1;Parent=MS.gene059050.t1 |
| chr2.4 | exon | 55941110 | 55941175 | 55941110 | ID=MS.gene059050.t1.exon8;Parent=MS.gene059050.t1 |
| chr2.4 | CDS | 55941110 | 55941175 | 55941110 | ID=cds.MS.gene059050.t1;Parent=MS.gene059050.t1 |
| chr2.4 | exon | 55940752 | 55940817 | 55940752 | ID=MS.gene059050.t1.exon9;Parent=MS.gene059050.t1 |
| chr2.4 | CDS | 55940752 | 55940817 | 55940752 | ID=cds.MS.gene059050.t1;Parent=MS.gene059050.t1 |
| chr2.4 | exon | 55940067 | 55940141 | 55940067 | ID=MS.gene059050.t1.exon10;Parent=MS.gene059050.t1 |
| chr2.4 | CDS | 55940067 | 55940141 | 55940067 | ID=cds.MS.gene059050.t1;Parent=MS.gene059050.t1 |
| chr2.4 | exon | 55938794 | 55938847 | 55938794 | ID=MS.gene059050.t1.exon11;Parent=MS.gene059050.t1 |
| chr2.4 | CDS | 55938794 | 55938847 | 55938794 | ID=cds.MS.gene059050.t1;Parent=MS.gene059050.t1 |
| chr2.4 | exon | 55938436 | 55938501 | 55938436 | ID=MS.gene059050.t1.exon12;Parent=MS.gene059050.t1 |
| chr2.4 | CDS | 55938436 | 55938501 | 55938436 | ID=cds.MS.gene059050.t1;Parent=MS.gene059050.t1 |
| chr2.4 | exon | 55937751 | 55937825 | 55937751 | ID=MS.gene059050.t1.exon13;Parent=MS.gene059050.t1 |
| chr2.4 | CDS | 55937751 | 55937825 | 55937751 | ID=cds.MS.gene059050.t1;Parent=MS.gene059050.t1 |
| chr2.4 | exon | 55936470 | 55936535 | 55936470 | ID=MS.gene059050.t1.exon14;Parent=MS.gene059050.t1 |
| chr2.4 | CDS | 55936470 | 55936535 | 55936470 | ID=cds.MS.gene059050.t1;Parent=MS.gene059050.t1 |
| chr2.4 | exon | 55935554 | 55935786 | 55935554 | ID=MS.gene059050.t1.exon15;Parent=MS.gene059050.t1 |
| chr2.4 | CDS | 55935554 | 55935786 | 55935554 | ID=cds.MS.gene059050.t1;Parent=MS.gene059050.t1 |
| Gene Sequence |
| Protein sequence |
