Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98040.t1 | XP_003616041.1 | 92.9 | 604 | 43 | 0 | 1 | 604 | 1 | 604 | 4.80E-179 | 637.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98040.t1 | F4KEW8 | 50.6 | 330 | 139 | 8 | 6 | 328 | 6 | 318 | 2.0e-64 | 248.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98040.t1 | G7K0U4 | 92.9 | 604 | 43 | 0 | 1 | 604 | 1 | 604 | 3.5e-179 | 637.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04998 | MS.gene98040 | 0.830508 | 2.82E-55 | -1.69E-46 |
| MS.gene050414 | MS.gene98040 | 0.809343 | 1.98E-50 | -1.69E-46 |
| MS.gene050646 | MS.gene98040 | 0.810618 | 1.05E-50 | -1.69E-46 |
| MS.gene050945 | MS.gene98040 | 0.8227 | 2.06E-53 | -1.69E-46 |
| MS.gene051043 | MS.gene98040 | 0.832803 | 7.67E-56 | -1.69E-46 |
| MS.gene051234 | MS.gene98040 | 0.845418 | 4.11E-59 | -1.69E-46 |
| MS.gene052072 | MS.gene98040 | 0.817076 | 3.98E-52 | -1.69E-46 |
| MS.gene052296 | MS.gene98040 | 0.825192 | 5.36E-54 | -1.69E-46 |
| MS.gene054413 | MS.gene98040 | 0.806685 | 7.29E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene98040 | 0.817444 | 3.29E-52 | -1.69E-46 |
| MS.gene057622 | MS.gene98040 | 0.808661 | 2.78E-50 | -1.69E-46 |
| MS.gene058149 | MS.gene98040 | 0.807346 | 5.29E-50 | -1.69E-46 |
| MS.gene060763 | MS.gene98040 | 0.809934 | 1.48E-50 | -1.69E-46 |
| MS.gene061100 | MS.gene98040 | 0.81122 | 7.81E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98040.t1 | MTR_5g075490 | 96.358 | 604 | 22 | 0 | 1 | 604 | 1 | 604 | 0.0 | 1188 |
| MS.gene98040.t1 | MTR_3g467610 | 51.536 | 586 | 195 | 11 | 44 | 604 | 15 | 536 | 2.60e-174 | 505 |
| MS.gene98040.t1 | MTR_6g082800 | 31.749 | 526 | 307 | 12 | 112 | 604 | 2 | 508 | 6.48e-52 | 186 |
| MS.gene98040.t1 | MTR_1g103160 | 59.690 | 129 | 40 | 2 | 16 | 134 | 5 | 131 | 2.46e-42 | 164 |
| MS.gene98040.t1 | MTR_1g103160 | 59.690 | 129 | 40 | 2 | 16 | 134 | 8 | 134 | 2.50e-42 | 164 |
| MS.gene98040.t1 | MTR_1g071540 | 75.862 | 87 | 21 | 0 | 16 | 102 | 10 | 96 | 2.97e-40 | 158 |
| MS.gene98040.t1 | MTR_5g006520 | 75.862 | 87 | 21 | 0 | 16 | 102 | 8 | 94 | 2.57e-39 | 155 |
| MS.gene98040.t1 | MTR_5g006520 | 75.862 | 87 | 21 | 0 | 16 | 102 | 8 | 94 | 4.71e-39 | 154 |
| MS.gene98040.t1 | MTR_7g095410 | 28.618 | 615 | 298 | 22 | 16 | 513 | 8 | 598 | 1.14e-38 | 153 |
| MS.gene98040.t1 | MTR_7g095410 | 28.618 | 615 | 298 | 22 | 16 | 513 | 8 | 598 | 1.39e-38 | 153 |
| MS.gene98040.t1 | MTR_5g032060 | 55.556 | 99 | 40 | 2 | 20 | 118 | 9 | 103 | 7.10e-31 | 129 |
| MS.gene98040.t1 | MTR_8g032900 | 28.543 | 508 | 310 | 15 | 112 | 596 | 2 | 479 | 2.60e-29 | 122 |
| MS.gene98040.t1 | MTR_8g471130 | 44.715 | 123 | 58 | 3 | 20 | 132 | 9 | 131 | 1.40e-28 | 122 |
| MS.gene98040.t1 | MTR_3g093770 | 28.065 | 367 | 235 | 7 | 237 | 593 | 178 | 525 | 1.86e-27 | 117 |
| MS.gene98040.t1 | MTR_5g066340 | 50.505 | 99 | 45 | 1 | 20 | 118 | 9 | 103 | 1.36e-25 | 112 |
| MS.gene98040.t1 | MTR_1g103160 | 55.446 | 101 | 33 | 2 | 44 | 134 | 1 | 99 | 1.82e-25 | 112 |
| MS.gene98040.t1 | MTR_7g108070 | 64.557 | 79 | 25 | 2 | 22 | 97 | 10 | 88 | 3.87e-25 | 106 |
| MS.gene98040.t1 | MTR_1g088965 | 54.839 | 93 | 41 | 1 | 8 | 100 | 4 | 95 | 5.14e-24 | 106 |
| MS.gene98040.t1 | MTR_8g032930 | 28.878 | 419 | 253 | 11 | 218 | 598 | 85 | 496 | 6.71e-23 | 102 |
| MS.gene98040.t1 | MTR_7g095410 | 26.235 | 587 | 292 | 22 | 44 | 513 | 1 | 563 | 1.53e-21 | 100 |
| MS.gene98040.t1 | MTR_3g100190 | 53.333 | 75 | 33 | 1 | 30 | 102 | 14 | 88 | 6.41e-18 | 88.6 |
| MS.gene98040.t1 | MTR_3g081590 | 79.592 | 49 | 3 | 1 | 1 | 42 | 1 | 49 | 3.03e-16 | 73.9 |
| MS.gene98040.t1 | MTR_3g093750 | 26.032 | 315 | 203 | 6 | 237 | 522 | 97 | 410 | 4.36e-13 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98040.t1 | AT5G58320 | 45.695 | 604 | 253 | 12 | 6 | 596 | 6 | 547 | 5.40e-134 | 403 |
| MS.gene98040.t1 | AT5G58320 | 45.695 | 604 | 253 | 12 | 6 | 596 | 6 | 547 | 5.40e-134 | 403 |
| MS.gene98040.t1 | AT2G30500 | 43.791 | 612 | 241 | 16 | 1 | 604 | 1 | 517 | 2.36e-124 | 377 |
| MS.gene98040.t1 | AT2G30500 | 43.791 | 612 | 241 | 16 | 1 | 604 | 1 | 517 | 2.36e-124 | 377 |
| MS.gene98040.t1 | AT2G30500 | 43.514 | 609 | 241 | 16 | 4 | 604 | 3 | 516 | 1.18e-122 | 372 |
| MS.gene98040.t1 | AT5G58320 | 50.442 | 452 | 199 | 10 | 6 | 448 | 6 | 441 | 8.25e-121 | 368 |
| MS.gene98040.t1 | AT5G58320 | 50.442 | 452 | 199 | 10 | 6 | 448 | 6 | 441 | 8.25e-121 | 368 |
| MS.gene98040.t1 | AT5G58320 | 48.804 | 418 | 181 | 9 | 44 | 448 | 1 | 398 | 2.56e-102 | 318 |
| MS.gene98040.t1 | AT1G03080 | 74.157 | 89 | 23 | 0 | 19 | 107 | 10 | 98 | 1.72e-39 | 156 |
| MS.gene98040.t1 | AT1G03080 | 74.157 | 89 | 23 | 0 | 19 | 107 | 10 | 98 | 1.72e-39 | 156 |
| MS.gene98040.t1 | AT1G03080 | 74.157 | 89 | 23 | 0 | 19 | 107 | 10 | 98 | 1.72e-39 | 156 |
| MS.gene98040.t1 | AT3G22790 | 75.581 | 86 | 20 | 1 | 16 | 101 | 8 | 92 | 2.60e-37 | 149 |
| MS.gene98040.t1 | AT3G22790 | 75.581 | 86 | 20 | 1 | 16 | 101 | 8 | 92 | 2.60e-37 | 149 |
| MS.gene98040.t1 | AT3G22790 | 75.581 | 86 | 20 | 1 | 16 | 101 | 8 | 92 | 2.60e-37 | 149 |
| MS.gene98040.t1 | AT4G02710 | 68.966 | 87 | 27 | 0 | 17 | 103 | 9 | 95 | 9.66e-37 | 147 |
| MS.gene98040.t1 | AT4G14760 | 69.318 | 88 | 26 | 1 | 16 | 103 | 8 | 94 | 7.72e-35 | 142 |
| MS.gene98040.t1 | AT4G14760 | 69.318 | 88 | 26 | 1 | 16 | 103 | 8 | 94 | 7.72e-35 | 142 |
| MS.gene98040.t1 | AT4G14760 | 69.318 | 88 | 26 | 1 | 16 | 103 | 8 | 94 | 7.72e-35 | 142 |
| MS.gene98040.t1 | AT4G14760 | 69.318 | 88 | 26 | 1 | 16 | 103 | 8 | 94 | 7.72e-35 | 142 |
| MS.gene98040.t1 | AT2G22560 | 62.651 | 83 | 31 | 0 | 20 | 102 | 9 | 91 | 1.87e-30 | 127 |
| MS.gene98040.t1 | AT5G10500 | 43.939 | 132 | 71 | 1 | 12 | 140 | 1 | 132 | 5.36e-29 | 123 |
| MS.gene98040.t1 | AT1G09720 | 61.446 | 83 | 32 | 0 | 20 | 102 | 9 | 91 | 3.22e-28 | 120 |
| MS.gene98040.t1 | AT1G58215 | 60.241 | 83 | 33 | 0 | 20 | 102 | 9 | 91 | 3.84e-28 | 120 |
| MS.gene98040.t1 | AT1G03470 | 62.338 | 77 | 28 | 1 | 20 | 95 | 5 | 81 | 7.26e-25 | 104 |
| MS.gene98040.t1 | AT1G03470 | 62.338 | 77 | 28 | 1 | 20 | 95 | 5 | 81 | 7.26e-25 | 104 |
| MS.gene98040.t1 | AT1G03470 | 62.338 | 77 | 28 | 1 | 20 | 95 | 5 | 81 | 7.26e-25 | 104 |
| MS.gene98040.t1 | AT1G03470 | 62.338 | 77 | 28 | 1 | 20 | 95 | 5 | 81 | 7.26e-25 | 104 |
| MS.gene98040.t1 | AT2G47920 | 56.098 | 82 | 36 | 0 | 16 | 97 | 4 | 85 | 2.47e-24 | 102 |
| MS.gene98040.t1 | AT2G47920 | 56.098 | 82 | 36 | 0 | 16 | 97 | 4 | 85 | 2.47e-24 | 102 |
| MS.gene98040.t1 | AT5G05180 | 30.935 | 278 | 149 | 7 | 353 | 595 | 152 | 421 | 2.85e-19 | 91.3 |
| MS.gene98040.t1 | AT5G05180 | 30.686 | 277 | 127 | 7 | 353 | 595 | 152 | 397 | 3.57e-19 | 90.5 |
| MS.gene98040.t1 | AT5G05180 | 30.935 | 278 | 149 | 7 | 353 | 595 | 122 | 391 | 5.01e-19 | 90.1 |
| MS.gene98040.t1 | AT3G10880 | 44.898 | 98 | 53 | 1 | 488 | 584 | 184 | 281 | 5.20e-13 | 70.5 |
| MS.gene98040.t1 | AT3G10880 | 44.898 | 98 | 53 | 1 | 488 | 584 | 184 | 281 | 5.20e-13 | 70.5 |
| MS.gene98040.t1 | AT3G10880 | 44.898 | 98 | 53 | 1 | 488 | 584 | 222 | 319 | 5.94e-13 | 70.5 |
| MS.gene98040.t1 | AT3G10880 | 44.898 | 98 | 53 | 1 | 488 | 584 | 222 | 319 | 5.94e-13 | 70.5 |
| MS.gene98040.t1 | AT4G03153 | 41.026 | 78 | 41 | 2 | 23 | 95 | 7 | 84 | 6.84e-12 | 65.9 |
Find 126 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGGGTTTGATTTCTTTCT+TGG | 0.129859 | 5.1:-57993852 | MS.gene98040:CDS |
| GCATAAGAGGGTTCCAATTT+TGG | 0.168910 | 5.1:-57992491 | MS.gene98040:CDS |
| CTCTGGAAAATGGCTGCTTC+TGG | 0.173281 | 5.1:-57994729 | None:intergenic |
| ATCCATATTTCTTGAATCTA+AGG | 0.206718 | 5.1:+57993449 | None:intergenic |
| AATTATTAGGCAGCCAAAAT+TGG | 0.250987 | 5.1:+57992478 | None:intergenic |
| TTGTTCGTATGCATTAATTT+TGG | 0.258097 | 5.1:+57993554 | None:intergenic |
| ATCCTTAGATTCAAGAAATA+TGG | 0.259814 | 5.1:-57993451 | MS.gene98040:CDS |
| AAAGAGCCACTTAGAATTCT+TGG | 0.264250 | 5.1:+57994525 | None:intergenic |
| TCAACCAAAGCAACCAATTC+TGG | 0.267721 | 5.1:+57994056 | None:intergenic |
| TCAGCTTGACTCGGCTAAAA+AGG | 0.286993 | 5.1:-57993232 | MS.gene98040:CDS |
| TTTGATTTCTTTCTTGGAAC+TGG | 0.294515 | 5.1:-57993846 | MS.gene98040:CDS |
| TCAACATCCGTTTCACATTC+CGG | 0.333589 | 5.1:+57994141 | None:intergenic |
| GAGGCCAGAATTGGTTGCTT+TGG | 0.335656 | 5.1:-57994060 | MS.gene98040:CDS |
| AATCAAGGAAATCACATTCT+TGG | 0.339438 | 5.1:-57994570 | MS.gene98040:CDS |
| AAATCAAGCAACCGGGCTGC+TGG | 0.367538 | 5.1:-57993870 | MS.gene98040:CDS |
| GACTTCAAATTAGCTTTCTC+GGG | 0.368269 | 5.1:+57993054 | None:intergenic |
| AAGGTTAAAGACTAGTTTAT+CGG | 0.368379 | 5.1:-57993139 | MS.gene98040:CDS |
| AGACTTCAAATTAGCTTTCT+CGG | 0.376529 | 5.1:+57993053 | None:intergenic |
| TCTGGAAAATGGCTGCTTCT+GGG | 0.385154 | 5.1:-57994728 | None:intergenic |
| AAGAGAAGCGCGAGGCGATC+AGG | 0.385466 | 5.1:-57992579 | MS.gene98040:CDS |
| CAGTGAAGCAACTTGCGTTT+CGG | 0.398464 | 5.1:+57993302 | None:intergenic |
| GATTTACGATGGGTCACGTT+TGG | 0.409430 | 5.1:+57993888 | None:intergenic |
| AATCACTAAAGAAAATCTTA+AGG | 0.409707 | 5.1:-57993328 | MS.gene98040:CDS |
| AAGAGCCACTTAGAATTCTT+GGG | 0.412841 | 5.1:+57994526 | None:intergenic |
| GGCGAAGAAACTCGAGGAAC+AGG | 0.419693 | 5.1:-57992638 | MS.gene98040:CDS |
| CCCATCGTAAATCAAGCAAC+CGG | 0.428996 | 5.1:-57993878 | MS.gene98040:CDS |
| TTACAAGAAGAGGCCAGAAT+TGG | 0.431957 | 5.1:-57994069 | MS.gene98040:CDS |
| CCATGTGTAATTCGTTCAAA+TGG | 0.438638 | 5.1:+57992725 | None:intergenic |
| AGGTTTCAGTTTCATCTAGT+GGG | 0.439800 | 5.1:-57993608 | MS.gene98040:CDS |
| GTCTGAAATGTCAAAGTTGT+TGG | 0.441122 | 5.1:-57993034 | MS.gene98040:CDS |
| AAGCATCGATGGTGTGGATA+AGG | 0.448894 | 5.1:-57993400 | MS.gene98040:CDS |
| GAGGTTTCAGTTTCATCTAG+TGG | 0.450219 | 5.1:-57993609 | MS.gene98040:CDS |
| AACTCAAGAGACGGTAGGAT+TGG | 0.454679 | 5.1:-57992760 | MS.gene98040:CDS |
| GATTTCTTTCTTGGAACTGG+TGG | 0.455413 | 5.1:-57993843 | MS.gene98040:CDS |
| TGGCTCTTTGAAAATCTTGA+AGG | 0.456114 | 5.1:-57994511 | MS.gene98040:intron |
| AAATGAAGAGGTTGGAATCA+AGG | 0.459735 | 5.1:-57994585 | MS.gene98040:CDS |
| CCCGGTTGCTTGATTTACGA+TGG | 0.468876 | 5.1:+57993877 | None:intergenic |
| CTACCGTGGTTACCGATCAT+TGG | 0.475144 | 5.1:-57994027 | MS.gene98040:CDS |
| TATGGATGTTGGTGTTGAGT+TGG | 0.479532 | 5.1:-57993433 | MS.gene98040:CDS |
| ATTTCTTTCTTGGAACTGGT+GGG | 0.483275 | 5.1:-57993842 | MS.gene98040:CDS |
| TCGCGGAATGGTACTGATCC+AGG | 0.485174 | 5.1:-57993714 | MS.gene98040:CDS |
| TTTGGAGAGGGCAAAGTTGA+GGG | 0.486062 | 5.1:+57993906 | None:intergenic |
| ATCTGAGGATTTATTTACCT+CGG | 0.488846 | 5.1:+57993275 | None:intergenic |
| GGAAATCACATTCTTGGTGG+TGG | 0.489138 | 5.1:-57994564 | MS.gene98040:CDS |
| CGGACCGGGATCATGAGATC+AGG | 0.489204 | 5.1:-57993119 | MS.gene98040:CDS |
| TTTATTCTTCTGTTCATACC+TGG | 0.492725 | 5.1:+57993696 | None:intergenic |
| GATAATCTTAATGTAGAAGT+AGG | 0.496198 | 5.1:-57992802 | MS.gene98040:CDS |
| AGTGAGGCTGTGTCACCACT+TGG | 0.504390 | 5.1:+57993366 | None:intergenic |
| ACTGAGAGAGAACAGCATAA+AGG | 0.506875 | 5.1:-57992863 | MS.gene98040:CDS |
| CTTTAACCTCAGAGATGGAC+CGG | 0.508828 | 5.1:-57994160 | MS.gene98040:intron |
| CAGAAATGTATTACAAGAAG+AGG | 0.510966 | 5.1:-57994079 | MS.gene98040:CDS |
| AGTGGTGACACAGCCTCACT+TGG | 0.511633 | 5.1:-57993363 | MS.gene98040:CDS |
| TGAAAGAGCTGATCAGAGAG+TGG | 0.513671 | 5.1:-57992996 | MS.gene98040:CDS |
| CCATTTGAACGAATTACACA+TGG | 0.514635 | 5.1:-57992725 | MS.gene98040:CDS |
| GAACGTTACGATCATGTGAC+TGG | 0.515279 | 5.1:-57994002 | MS.gene98040:CDS |
| TGATCTCCAATCCCAAGGCT+CGG | 0.516253 | 5.1:-57993955 | MS.gene98040:CDS |
| TAAAGACTAGTTTATCGGAC+CGG | 0.517594 | 5.1:-57993134 | MS.gene98040:CDS |
| GATCTCCAATCCCAAGGCTC+GGG | 0.520448 | 5.1:-57993954 | MS.gene98040:CDS |
| AGATAGAATTCAGCAGCTGC+AGG | 0.520939 | 5.1:-57993256 | MS.gene98040:CDS |
| CGATGGGTCACGTTTGGAGA+GGG | 0.521590 | 5.1:+57993894 | None:intergenic |
| CTGGAAAATGGCTGCTTCTG+GGG | 0.522334 | 5.1:-57994727 | None:intergenic |
| CGTAACGTTCGGCCAATGAT+CGG | 0.523697 | 5.1:+57994015 | None:intergenic |
| CCGGTTGCTTGATTTACGAT+GGG | 0.528312 | 5.1:+57993878 | None:intergenic |
| TAGCAAGCAAATGAAGAGGT+TGG | 0.529450 | 5.1:-57994593 | MS.gene98040:CDS |
| TATTCAGCTTTCTCGCGGAA+TGG | 0.530197 | 5.1:-57993726 | MS.gene98040:CDS |
| GATTCAAGAAATATGGATGT+TGG | 0.539714 | 5.1:-57993444 | MS.gene98040:CDS |
| GAACAGAAGAATAAACGAGT+TGG | 0.542232 | 5.1:-57993688 | MS.gene98040:CDS |
| AATCAAGCAACCGGGCTGCT+GGG | 0.542696 | 5.1:-57993869 | MS.gene98040:CDS |
| AGTAGGTTCACTCAAGGAAG+AGG | 0.544799 | 5.1:-57992785 | MS.gene98040:CDS |
| CTCTACTATGACGGGTTCCG+AGG | 0.544882 | 5.1:-57993778 | MS.gene98040:CDS |
| GTTTGGAGAGGGCAAAGTTG+AGG | 0.545858 | 5.1:+57993905 | None:intergenic |
| GGTGTTGAGTTGGAAGTTGA+AGG | 0.555150 | 5.1:-57993423 | MS.gene98040:CDS |
| CAAGGAAATCACATTCTTGG+TGG | 0.558813 | 5.1:-57994567 | MS.gene98040:CDS |
| TGTACAACTGATTTCTGCAA+TGG | 0.559967 | 5.1:-57992698 | MS.gene98040:CDS |
| GTGGTGACACAGCCTCACTT+GGG | 0.561345 | 5.1:-57993362 | MS.gene98040:CDS |
| AGATGGACCGGAATGTGAAA+CGG | 0.562058 | 5.1:-57994148 | MS.gene98040:CDS |
| AGTCACATGATCGTAACGTT+CGG | 0.563685 | 5.1:+57994004 | None:intergenic |
| TTTCTGCTCAGCATCAGATA+CGG | 0.563946 | 5.1:+57993083 | None:intergenic |
| GATGAGTCCTCTACTATGAC+GGG | 0.566905 | 5.1:-57993786 | MS.gene98040:CDS |
| AAAGACTAGTTTATCGGACC+GGG | 0.567985 | 5.1:-57993133 | MS.gene98040:CDS |
| AGAAATCAAACCCAGCAGCC+CGG | 0.570169 | 5.1:+57993859 | None:intergenic |
| AGTCCCTGATCTCATGATCC+CGG | 0.574038 | 5.1:+57993115 | None:intergenic |
| GAAATCACATTCTTGGTGGT+GGG | 0.575639 | 5.1:-57994563 | MS.gene98040:CDS |
| GAAAGAGCTGATCAGAGAGT+GGG | 0.576449 | 5.1:-57992995 | MS.gene98040:CDS |
| GAAGTTGAAGGAAGCATCGA+TGG | 0.578625 | 5.1:-57993411 | MS.gene98040:CDS |
| GGATGAATCTGATGATTCAT+CGG | 0.580721 | 5.1:-57993757 | MS.gene98040:CDS |
| ATTCTAGCAAGCAAATGAAG+AGG | 0.587841 | 5.1:-57994597 | MS.gene98040:CDS |
| TCAATCCGAAAAGATAGAGA+TGG | 0.588371 | 5.1:-57992932 | MS.gene98040:CDS |
| TGAAGGAAGCATCGATGGTG+TGG | 0.589058 | 5.1:-57993406 | MS.gene98040:CDS |
| AGATGAGTCCTCTACTATGA+CGG | 0.591582 | 5.1:-57993787 | MS.gene98040:CDS |
| CTCGGAACCCGTCATAGTAG+AGG | 0.596535 | 5.1:+57993779 | None:intergenic |
| AACTCGAGGAACAGGTGGAG+AGG | 0.604467 | 5.1:-57992630 | MS.gene98040:CDS |
| ACAATTATTCAGCTTTCTCG+CGG | 0.609429 | 5.1:-57993731 | MS.gene98040:CDS |
| TCGAAGCTCCTCCCCAAGTG+AGG | 0.614697 | 5.1:+57993350 | None:intergenic |
| ACGATGGGTCACGTTTGGAG+AGG | 0.616774 | 5.1:+57993893 | None:intergenic |
| GGTTTCAGTTTCATCTAGTG+GGG | 0.617920 | 5.1:-57993607 | MS.gene98040:CDS |
| CCATCGTAAATCAAGCAACC+GGG | 0.618032 | 5.1:-57993877 | MS.gene98040:CDS |
| CAATCTGATCTCCAATCCCA+AGG | 0.619499 | 5.1:-57993960 | MS.gene98040:CDS |
| AGCAGCTGAAGAGAAGCGCG+AGG | 0.621012 | 5.1:-57992587 | MS.gene98040:CDS |
| TGTAGAAGTAGGTTCACTCA+AGG | 0.622038 | 5.1:-57992791 | MS.gene98040:CDS |
| TGAATCATCAGATTCATCCT+CGG | 0.623472 | 5.1:+57993761 | None:intergenic |
| GGACCGGGATCATGAGATCA+GGG | 0.626205 | 5.1:-57993118 | MS.gene98040:CDS |
| ATCCGAAAAGATAGAGATGG+AGG | 0.629419 | 5.1:-57992929 | MS.gene98040:CDS |
| GATGTTGAAGCTGATAGAAG+AGG | 0.631830 | 5.1:-57994126 | MS.gene98040:CDS |
| CAGCTGCTGAATTCTATCTG+AGG | 0.637838 | 5.1:+57993260 | None:intergenic |
| TCAGTCCCAAGAATTCTAAG+TGG | 0.638403 | 5.1:-57994531 | MS.gene98040:CDS |
| AGGTGAACTCAAGAGACGGT+AGG | 0.638743 | 5.1:-57992765 | MS.gene98040:CDS |
| TTGGTTGAAGAGTTCTACCG+TGG | 0.644157 | 5.1:-57994041 | MS.gene98040:CDS |
| TGACACAGCCTCACTTGGGG+AGG | 0.645310 | 5.1:-57993358 | MS.gene98040:CDS |
| AGTAGAAGAGATGAAAACAA+AGG | 0.648447 | 5.1:-57992659 | MS.gene98040:CDS |
| GAAGAGGTGAACTCAAGAGA+CGG | 0.656685 | 5.1:-57992769 | MS.gene98040:CDS |
| GAAGAAACTCGAGGAACAGG+TGG | 0.656748 | 5.1:-57992635 | MS.gene98040:CDS |
| ATCAGAGAGTGGGAAAGCCG+CGG | 0.659031 | 5.1:-57992985 | MS.gene98040:CDS |
| TGGTGACACAGCCTCACTTG+GGG | 0.660841 | 5.1:-57993361 | MS.gene98040:CDS |
| ACAGGAAGGTGAACATGCAG+AGG | 0.661050 | 5.1:-57993628 | MS.gene98040:CDS |
| AACTTCAAGAAAGACTTGCA+AGG | 0.664304 | 5.1:-57993158 | MS.gene98040:CDS |
| GCTGCAGGATCAGCTTGACT+CGG | 0.679769 | 5.1:-57993241 | MS.gene98040:CDS |
| GGAGAGGGCAAAGTTGAGGG+CGG | 0.681487 | 5.1:+57993909 | None:intergenic |
| AAGGAATTGTTCGAGCCAAG+TGG | 0.683149 | 5.1:-57993381 | MS.gene98040:CDS |
| ACTTCAAATTAGCTTTCTCG+GGG | 0.683797 | 5.1:+57993055 | None:intergenic |
| GTTGGAAAATGAACTGCGCG+AGG | 0.688241 | 5.1:-57993670 | MS.gene98040:CDS |
| ATCATGTGACTGGAGAATTG+CGG | 0.692757 | 5.1:-57993992 | MS.gene98040:CDS |
| AACAAAGGCGAAGAAACTCG+AGG | 0.715395 | 5.1:-57992644 | MS.gene98040:CDS |
| GCTCTTCAAATGATCGACCG+CGG | 0.720469 | 5.1:+57992968 | None:intergenic |
| CGGCCAATGATCGGTAACCA+CGG | 0.730068 | 5.1:+57994024 | None:intergenic |
| AGTTGCTTCACTGAAAACCG+AGG | 0.737756 | 5.1:-57993292 | MS.gene98040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGAATGTTAATTATCTTT+AGG | - | chr5.1:57992999-57993018 | MS.gene98040:CDS | 15.0% |
| !!! | TAAAGATAATTTTGTCAAAA+CGG | + | chr5.1:57993028-57993047 | None:intergenic | 15.0% |
| !! | AATCACTAAAGAAAATCTTA+AGG | - | chr5.1:57993875-57993894 | MS.gene98040:CDS | 20.0% |
| !!! | AATTAACTTGCACATAATAA+TGG | - | chr5.1:57992558-57992577 | MS.gene98040:CDS | 20.0% |
| !!! | CTACTTTAAAACTTTTTTGT+TGG | - | chr5.1:57992973-57992992 | MS.gene98040:CDS | 20.0% |
| ! | ATCCATATTTCTTGAATCTA+AGG | + | chr5.1:57993757-57993776 | None:intergenic | 25.0% |
| ! | ATCCTTAGATTCAAGAAATA+TGG | - | chr5.1:57993752-57993771 | MS.gene98040:CDS | 25.0% |
| ! | GATAATCTTAATGTAGAAGT+AGG | - | chr5.1:57994401-57994420 | MS.gene98040:intron | 25.0% |
| !! | ATGCTTAAGCAACATTTTAT+AGG | - | chr5.1:57994689-57994708 | MS.gene98040:intron | 25.0% |
| !! | TGCTTAAGCAACATTTTATA+GGG | - | chr5.1:57994690-57994709 | MS.gene98040:intron | 25.0% |
| !! | TTGTTCGTATGCATTAATTT+TGG | + | chr5.1:57993652-57993671 | None:intergenic | 25.0% |
| !!! | AAACTCTTTAACTTGTATGT+CGG | - | chr5.1:57992905-57992924 | MS.gene98040:CDS | 25.0% |
| !!! | AAGGTTAAAGACTAGTTTAT+CGG | - | chr5.1:57994064-57994083 | MS.gene98040:CDS | 25.0% |
| !!! | GTAATACATTTCTGCTTTTT+TGG | + | chr5.1:57993118-57993137 | None:intergenic | 25.0% |
| !!! | GTTGGTTATTTTGTTATCTT+AGG | - | chr5.1:57992580-57992599 | MS.gene98040:CDS | 25.0% |
| !!! | TCTCTAGTTTTAAGTTATCA+AGG | + | chr5.1:57994379-57994398 | None:intergenic | 25.0% |
| AAAAGAAAAACTTTGGACAC+AGG | - | chr5.1:57993557-57993576 | MS.gene98040:CDS | 30.0% | |
| AACTTGCACATAATAATGGT+TGG | - | chr5.1:57992562-57992581 | MS.gene98040:CDS | 30.0% | |
| AATCAAGGAAATCACATTCT+TGG | - | chr5.1:57992633-57992652 | MS.gene98040:CDS | 30.0% | |
| AGTAGAAGAGATGAAAACAA+AGG | - | chr5.1:57994544-57994563 | MS.gene98040:CDS | 30.0% | |
| ATCTGAGGATTTATTTACCT+CGG | + | chr5.1:57993931-57993950 | None:intergenic | 30.0% | |
| ATTACTTTATTCGCCTTCTT+GGG | - | chr5.1:57992861-57992880 | MS.gene98040:CDS | 30.0% | |
| ATTATCTTTAACCTCAGAGA+TGG | - | chr5.1:57993038-57993057 | MS.gene98040:CDS | 30.0% | |
| CAGAAATGTATTACAAGAAG+AGG | - | chr5.1:57993124-57993143 | MS.gene98040:CDS | 30.0% | |
| GATTCAAGAAATATGGATGT+TGG | - | chr5.1:57993759-57993778 | MS.gene98040:CDS | 30.0% | |
| TATTACTTTATTCGCCTTCT+TGG | - | chr5.1:57992860-57992879 | MS.gene98040:CDS | 30.0% | |
| TCTGATATAAGCCAAAAAGA+CGG | - | chr5.1:57993390-57993409 | MS.gene98040:CDS | 30.0% | |
| TTTATTCTTCTGTTCATACC+TGG | + | chr5.1:57993510-57993529 | None:intergenic | 30.0% | |
| ! | AACATTTTATAGGGCATAAG+AGG | - | chr5.1:57994699-57994718 | MS.gene98040:intron | 30.0% |
| ! | ACATTTTATAGGGCATAAGA+GGG | - | chr5.1:57994700-57994719 | MS.gene98040:intron | 30.0% |
| ! | TTTGATTTCTTTCTTGGAAC+TGG | - | chr5.1:57993357-57993376 | MS.gene98040:CDS | 30.0% |
| !! | AATTTTGGCATAAACATCGT+CGG | + | chr5.1:57993637-57993656 | None:intergenic | 30.0% |
| !! | AGACTTCAAATTAGCTTTCT+CGG | + | chr5.1:57994153-57994172 | None:intergenic | 30.0% |
| !! | TTAACTTGTATGTCGGTAAT+TGG | - | chr5.1:57992912-57992931 | MS.gene98040:CDS | 30.0% |
| AAAGAGCCACTTAGAATTCT+TGG | + | chr5.1:57992681-57992700 | None:intergenic | 35.0% | |
| AAATGAAGAGGTTGGAATCA+AGG | - | chr5.1:57992618-57992637 | MS.gene98040:CDS | 35.0% | |
| AACTTCAAGAAAGACTTGCA+AGG | - | chr5.1:57994045-57994064 | MS.gene98040:CDS | 35.0% | |
| AAGAGCCACTTAGAATTCTT+GGG | + | chr5.1:57992680-57992699 | None:intergenic | 35.0% | |
| AATTACAAATCTCCCCAAGA+AGG | + | chr5.1:57992877-57992896 | None:intergenic | 35.0% | |
| ACAATTATTCAGCTTTCTCG+CGG | - | chr5.1:57993472-57993491 | MS.gene98040:CDS | 35.0% | |
| AGGTTTCAGTTTCATCTAGT+GGG | - | chr5.1:57993595-57993614 | MS.gene98040:CDS | 35.0% | |
| ATGGAGGCAGAATTGAAAAA+TGG | - | chr5.1:57994290-57994309 | MS.gene98040:intron | 35.0% | |
| ATTCTAGCAAGCAAATGAAG+AGG | - | chr5.1:57992606-57992625 | MS.gene98040:CDS | 35.0% | |
| ATTTCTTTCTTGGAACTGGT+GGG | - | chr5.1:57993361-57993380 | MS.gene98040:CDS | 35.0% | |
| CCATGTGTAATTCGTTCAAA+TGG | + | chr5.1:57994481-57994500 | None:intergenic | 35.0% | |
| CCATTTGAACGAATTACACA+TGG | - | chr5.1:57994478-57994497 | MS.gene98040:intron | 35.0% | |
| CTAAAAAGGATGTTGCTACT+TGG | - | chr5.1:57993985-57994004 | MS.gene98040:CDS | 35.0% | |
| GAACAGAAGAATAAACGAGT+TGG | - | chr5.1:57993515-57993534 | MS.gene98040:CDS | 35.0% | |
| GCAATGGAGTTTCATAATTC+TGG | - | chr5.1:57992934-57992953 | MS.gene98040:CDS | 35.0% | |
| GCGAGGTAAAAGAAAAACTT+TGG | - | chr5.1:57993550-57993569 | MS.gene98040:CDS | 35.0% | |
| GGATGAATCTGATGATTCAT+CGG | - | chr5.1:57993446-57993465 | MS.gene98040:CDS | 35.0% | |
| TCAATCCGAAAAGATAGAGA+TGG | - | chr5.1:57994271-57994290 | MS.gene98040:intron | 35.0% | |
| TGAATCATCAGATTCATCCT+CGG | + | chr5.1:57993445-57993464 | None:intergenic | 35.0% | |
| TTACTTTATTCGCCTTCTTG+GGG | - | chr5.1:57992862-57992881 | MS.gene98040:CDS | 35.0% | |
| ! | GTCTGAAATGTCAAAGTTGT+TGG | - | chr5.1:57994169-57994188 | MS.gene98040:intron | 35.0% |
| ! | TCTTTTCTCGCTGTTGAATT+TGG | + | chr5.1:57994015-57994034 | None:intergenic | 35.0% |
| ! | TGGCTCTTTGAAAATCTTGA+AGG | - | chr5.1:57992692-57992711 | MS.gene98040:CDS | 35.0% |
| ! | TGTACAACTGATTTCTGCAA+TGG | - | chr5.1:57994505-57994524 | MS.gene98040:intron | 35.0% |
| !! | ACTTCAAATTAGCTTTCTCG+GGG | + | chr5.1:57994151-57994170 | None:intergenic | 35.0% |
| !! | GACTTCAAATTAGCTTTCTC+GGG | + | chr5.1:57994152-57994171 | None:intergenic | 35.0% |
| !! | TAAAGACTAGTTTATCGGAC+CGG | - | chr5.1:57994069-57994088 | MS.gene98040:CDS | 35.0% |
| ACTGAGAGAGAACAGCATAA+AGG | - | chr5.1:57994340-57994359 | MS.gene98040:intron | 40.0% | |
| AGATGAGTCCTCTACTATGA+CGG | - | chr5.1:57993416-57993435 | MS.gene98040:CDS | 40.0% | |
| AGTCACATGATCGTAACGTT+CGG | + | chr5.1:57993202-57993221 | None:intergenic | 40.0% | |
| ATCATGTGACTGGAGAATTG+CGG | - | chr5.1:57993211-57993230 | MS.gene98040:CDS | 40.0% | |
| ATCCGAAAAGATAGAGATGG+AGG | - | chr5.1:57994274-57994293 | MS.gene98040:intron | 40.0% | |
| CAACTATACCAAAACTGCAG+AGG | + | chr5.1:57992831-57992850 | None:intergenic | 40.0% | |
| CAAGGAAATCACATTCTTGG+TGG | - | chr5.1:57992636-57992655 | MS.gene98040:CDS | 40.0% | |
| CTGTGAGATTGTCAGAATCA+CGG | - | chr5.1:57992801-57992820 | MS.gene98040:CDS | 40.0% | |
| GAAAAACTTTGGACACAGGA+AGG | - | chr5.1:57993561-57993580 | MS.gene98040:CDS | 40.0% | |
| GAGGTTTCAGTTTCATCTAG+TGG | - | chr5.1:57993594-57993613 | MS.gene98040:CDS | 40.0% | |
| GATGTTGAAGCTGATAGAAG+AGG | - | chr5.1:57993077-57993096 | MS.gene98040:CDS | 40.0% | |
| GATTTCTTTCTTGGAACTGG+TGG | - | chr5.1:57993360-57993379 | MS.gene98040:CDS | 40.0% | |
| GGTTTCAGTTTCATCTAGTG+GGG | - | chr5.1:57993596-57993615 | MS.gene98040:CDS | 40.0% | |
| TAGCAAGCAAATGAAGAGGT+TGG | - | chr5.1:57992610-57992629 | MS.gene98040:CDS | 40.0% | |
| TCAACATCCGTTTCACATTC+CGG | + | chr5.1:57993065-57993084 | None:intergenic | 40.0% | |
| TCAACCAAAGCAACCAATTC+TGG | + | chr5.1:57993150-57993169 | None:intergenic | 40.0% | |
| TCAGTCCCAAGAATTCTAAG+TGG | - | chr5.1:57992672-57992691 | MS.gene98040:CDS | 40.0% | |
| TGTAGAAGTAGGTTCACTCA+AGG | - | chr5.1:57994412-57994431 | MS.gene98040:intron | 40.0% | |
| TGTATGTCGGTAATTGGCAA+TGG | - | chr5.1:57992918-57992937 | MS.gene98040:CDS | 40.0% | |
| TTACAAGAAGAGGCCAGAAT+TGG | - | chr5.1:57993134-57993153 | MS.gene98040:CDS | 40.0% | |
| TTTCTGCTCAGCATCAGATA+CGG | + | chr5.1:57994123-57994142 | None:intergenic | 40.0% | |
| ! | ACTCATCTTCTCCGTCTTTT+TGG | + | chr5.1:57993404-57993423 | None:intergenic | 40.0% |
| ! | GAAATCACATTCTTGGTGGT+GGG | - | chr5.1:57992640-57992659 | MS.gene98040:CDS | 40.0% |
| ! | GCATAAGAGGGTTCCAATTT+TGG | - | chr5.1:57994712-57994731 | MS.gene98040:intron | 40.0% |
| ! | GCTGGGTTTGATTTCTTTCT+TGG | - | chr5.1:57993351-57993370 | MS.gene98040:CDS | 40.0% |
| ! | TGCCTCCATCTCTATCTTTT+CGG | + | chr5.1:57994279-57994298 | None:intergenic | 40.0% |
| !! | AAAGACTAGTTTATCGGACC+GGG | - | chr5.1:57994070-57994089 | MS.gene98040:CDS | 40.0% |
| !! | GAGTTTGTTAATGCATGCCT+GGG | - | chr5.1:57992774-57992793 | MS.gene98040:CDS | 40.0% |
| !! | TATGGATGTTGGTGTTGAGT+TGG | - | chr5.1:57993770-57993789 | MS.gene98040:CDS | 40.0% |
| !! | TGAGTTTGTTAATGCATGCC+TGG | - | chr5.1:57992773-57992792 | MS.gene98040:CDS | 40.0% |
| AACAAAGGCGAAGAAACTCG+AGG | - | chr5.1:57994559-57994578 | MS.gene98040:CDS | 45.0% | |
| AACTCAAGAGACGGTAGGAT+TGG | - | chr5.1:57994443-57994462 | MS.gene98040:intron | 45.0% | |
| AAGGAATTGTTCGAGCCAAG+TGG | - | chr5.1:57993822-57993841 | MS.gene98040:CDS | 45.0% | |
| AGATAGAATTCAGCAGCTGC+AGG | - | chr5.1:57993947-57993966 | MS.gene98040:CDS | 45.0% | |
| AGATGGACCGGAATGTGAAA+CGG | - | chr5.1:57993055-57993074 | MS.gene98040:CDS | 45.0% | |
| AGTAGGTTCACTCAAGGAAG+AGG | - | chr5.1:57994418-57994437 | MS.gene98040:intron | 45.0% | |
| AGTTGCTTCACTGAAAACCG+AGG | - | chr5.1:57993911-57993930 | MS.gene98040:CDS | 45.0% | |
| CAATCTGATCTCCAATCCCA+AGG | - | chr5.1:57993243-57993262 | MS.gene98040:CDS | 45.0% | |
| CAGCTGCTGAATTCTATCTG+AGG | + | chr5.1:57993946-57993965 | None:intergenic | 45.0% | |
| CAGTGAAGCAACTTGCGTTT+CGG | + | chr5.1:57993904-57993923 | None:intergenic | 45.0% | |
| CCATCGTAAATCAAGCAACC+GGG | - | chr5.1:57993326-57993345 | MS.gene98040:CDS | 45.0% | |
| CCCATCGTAAATCAAGCAAC+CGG | - | chr5.1:57993325-57993344 | MS.gene98040:CDS | 45.0% | |
| CCGGTTGCTTGATTTACGAT+GGG | + | chr5.1:57993328-57993347 | None:intergenic | 45.0% | |
| CTTTAACCTCAGAGATGGAC+CGG | - | chr5.1:57993043-57993062 | MS.gene98040:CDS | 45.0% | |
| GAAAGAGCTGATCAGAGAGT+GGG | - | chr5.1:57994208-57994227 | MS.gene98040:intron | 45.0% | |
| GAACGTTACGATCATGTGAC+TGG | - | chr5.1:57993201-57993220 | MS.gene98040:CDS | 45.0% | |
| GAAGAGGTGAACTCAAGAGA+CGG | - | chr5.1:57994434-57994453 | MS.gene98040:intron | 45.0% | |
| GACAATCTCACAGTAAACCC+AGG | + | chr5.1:57992794-57992813 | None:intergenic | 45.0% | |
| GATGAGTCCTCTACTATGAC+GGG | - | chr5.1:57993417-57993436 | MS.gene98040:CDS | 45.0% | |
| GATTTACGATGGGTCACGTT+TGG | + | chr5.1:57993318-57993337 | None:intergenic | 45.0% | |
| GGAAATCACATTCTTGGTGG+TGG | - | chr5.1:57992639-57992658 | MS.gene98040:CDS | 45.0% | |
| TATTCAGCTTTCTCGCGGAA+TGG | - | chr5.1:57993477-57993496 | MS.gene98040:CDS | 45.0% | |
| TGAAAGAGCTGATCAGAGAG+TGG | - | chr5.1:57994207-57994226 | MS.gene98040:intron | 45.0% | |
| TTGGTTGAAGAGTTCTACCG+TGG | - | chr5.1:57993162-57993181 | MS.gene98040:CDS | 45.0% | |
| TTTGGAGAGGGCAAAGTTGA+GGG | + | chr5.1:57993300-57993319 | None:intergenic | 45.0% | |
| !! | AAGCATCGATGGTGTGGATA+AGG | - | chr5.1:57993803-57993822 | MS.gene98040:CDS | 45.0% |
| !! | GAAGTTGAAGGAAGCATCGA+TGG | - | chr5.1:57993792-57993811 | MS.gene98040:CDS | 45.0% |
| !! | GGTGTTGAGTTGGAAGTTGA+AGG | - | chr5.1:57993780-57993799 | MS.gene98040:CDS | 45.0% |
| !! | TCAGCTTGACTCGGCTAAAA+AGG | - | chr5.1:57993971-57993990 | MS.gene98040:CDS | 45.0% |
| !! | TGCTTCTGGGGTAAGTGTTA+TGG | - | chr5.1:57992488-57992507 | MS.gene98040:CDS | 45.0% |
| AAAAACCCGAGCCTTGGGAT+TGG | + | chr5.1:57993257-57993276 | None:intergenic | 50.0% | |
| ACAGGAAGGTGAACATGCAG+AGG | - | chr5.1:57993575-57993594 | MS.gene98040:CDS | 50.0% | |
| AGAAATCAAACCCAGCAGCC+CGG | + | chr5.1:57993347-57993366 | None:intergenic | 50.0% | |
| AGGTGAACTCAAGAGACGGT+AGG | - | chr5.1:57994438-57994457 | MS.gene98040:intron | 50.0% | |
| AGTCCCTGATCTCATGATCC+CGG | + | chr5.1:57994091-57994110 | None:intergenic | 50.0% | |
| CCCGGTTGCTTGATTTACGA+TGG | + | chr5.1:57993329-57993348 | None:intergenic | 50.0% | |
| CGTAACGTTCGGCCAATGAT+CGG | + | chr5.1:57993191-57993210 | None:intergenic | 50.0% | |
| CTACCGTGGTTACCGATCAT+TGG | - | chr5.1:57993176-57993195 | MS.gene98040:CDS | 50.0% | |
| GAAGAAACTCGAGGAACAGG+TGG | - | chr5.1:57994568-57994587 | MS.gene98040:CDS | 50.0% | |
| GAGGCCAGAATTGGTTGCTT+TGG | - | chr5.1:57993143-57993162 | MS.gene98040:CDS | 50.0% | |
| GCTCTTCAAATGATCGACCG+CGG | + | chr5.1:57994238-57994257 | None:intergenic | 50.0% | |
| GTCTGAAAAACCCGAGCCTT+GGG | + | chr5.1:57993262-57993281 | None:intergenic | 50.0% | |
| GTTGGAAAATGAACTGCGCG+AGG | - | chr5.1:57993533-57993552 | MS.gene98040:CDS | 50.0% | |
| GTTTGGAGAGGGCAAAGTTG+AGG | + | chr5.1:57993301-57993320 | None:intergenic | 50.0% | |
| TGATCTCCAATCCCAAGGCT+CGG | - | chr5.1:57993248-57993267 | MS.gene98040:CDS | 50.0% | |
| TGTCTGAAAAACCCGAGCCT+TGG | + | chr5.1:57993263-57993282 | None:intergenic | 50.0% | |
| !! | TGAAGGAAGCATCGATGGTG+TGG | - | chr5.1:57993797-57993816 | MS.gene98040:CDS | 50.0% |
| AAATCAAGCAACCGGGCTGC+TGG | - | chr5.1:57993333-57993352 | MS.gene98040:CDS | 55.0% | |
| AACTCGAGGAACAGGTGGAG+AGG | - | chr5.1:57994573-57994592 | MS.gene98040:CDS | 55.0% | |
| AATCAAGCAACCGGGCTGCT+GGG | - | chr5.1:57993334-57993353 | MS.gene98040:CDS | 55.0% | |
| ACGATGGGTCACGTTTGGAG+AGG | + | chr5.1:57993313-57993332 | None:intergenic | 55.0% | |
| AGTGAGGCTGTGTCACCACT+TGG | + | chr5.1:57993840-57993859 | None:intergenic | 55.0% | |
| AGTGGTGACACAGCCTCACT+TGG | - | chr5.1:57993840-57993859 | MS.gene98040:CDS | 55.0% | |
| ATCAGAGAGTGGGAAAGCCG+CGG | - | chr5.1:57994218-57994237 | MS.gene98040:intron | 55.0% | |
| CACATTCCGGTCCATCTCTG+AGG | + | chr5.1:57993052-57993071 | None:intergenic | 55.0% | |
| CGATGGGTCACGTTTGGAGA+GGG | + | chr5.1:57993312-57993331 | None:intergenic | 55.0% | |
| CGGCCAATGATCGGTAACCA+CGG | + | chr5.1:57993182-57993201 | None:intergenic | 55.0% | |
| CTCGGAACCCGTCATAGTAG+AGG | + | chr5.1:57993427-57993446 | None:intergenic | 55.0% | |
| GATCTCCAATCCCAAGGCTC+GGG | - | chr5.1:57993249-57993268 | MS.gene98040:CDS | 55.0% | |
| GCTGCAGGATCAGCTTGACT+CGG | - | chr5.1:57993962-57993981 | MS.gene98040:CDS | 55.0% | |
| GGACCGGGATCATGAGATCA+GGG | - | chr5.1:57994085-57994104 | MS.gene98040:CDS | 55.0% | |
| GGCGAAGAAACTCGAGGAAC+AGG | - | chr5.1:57994565-57994584 | MS.gene98040:CDS | 55.0% | |
| GTGGTGACACAGCCTCACTT+GGG | - | chr5.1:57993841-57993860 | MS.gene98040:CDS | 55.0% | |
| TGGTGACACAGCCTCACTTG+GGG | - | chr5.1:57993842-57993861 | MS.gene98040:CDS | 55.0% | |
| ! | ACGGTGAGCCTCTGCAGTTT+TGG | - | chr5.1:57992820-57992839 | MS.gene98040:CDS | 55.0% |
| !! | CTCTACTATGACGGGTTCCG+AGG | - | chr5.1:57993425-57993444 | MS.gene98040:CDS | 55.0% |
| !! | GGCTCGGGTTTTTCAGACAC+TGG | - | chr5.1:57993264-57993283 | MS.gene98040:CDS | 55.0% |
| !! | TCGCGGAATGGTACTGATCC+AGG | - | chr5.1:57993489-57993508 | MS.gene98040:CDS | 55.0% |
| CGGACCGGGATCATGAGATC+AGG | - | chr5.1:57994084-57994103 | MS.gene98040:CDS | 60.0% | |
| GGAGAGGGCAAAGTTGAGGG+CGG | + | chr5.1:57993297-57993316 | None:intergenic | 60.0% | |
| TCGAAGCTCCTCCCCAAGTG+AGG | + | chr5.1:57993856-57993875 | None:intergenic | 60.0% | |
| TGACACAGCCTCACTTGGGG+AGG | - | chr5.1:57993845-57993864 | MS.gene98040:CDS | 60.0% | |
| ! | AAGAGAAGCGCGAGGCGATC+AGG | - | chr5.1:57994624-57994643 | MS.gene98040:intron | 60.0% |
| ! | AGCAGCTGAAGAGAAGCGCG+AGG | - | chr5.1:57994616-57994635 | MS.gene98040:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 57992483 | 57994742 | 57992483 | ID=MS.gene98040 |
| chr5.1 | mRNA | 57992483 | 57994742 | 57992483 | ID=MS.gene98040.t1;Parent=MS.gene98040 |
| chr5.1 | exon | 57994728 | 57994742 | 57994728 | ID=MS.gene98040.t1.exon1;Parent=MS.gene98040.t1 |
| chr5.1 | CDS | 57994728 | 57994742 | 57994728 | ID=cds.MS.gene98040.t1;Parent=MS.gene98040.t1 |
| chr5.1 | exon | 57994512 | 57994623 | 57994512 | ID=MS.gene98040.t1.exon2;Parent=MS.gene98040.t1 |
| chr5.1 | CDS | 57994512 | 57994623 | 57994512 | ID=cds.MS.gene98040.t1;Parent=MS.gene98040.t1 |
| chr5.1 | exon | 57992483 | 57994170 | 57992483 | ID=MS.gene98040.t1.exon3;Parent=MS.gene98040.t1 |
| chr5.1 | CDS | 57992483 | 57994170 | 57992483 | ID=cds.MS.gene98040.t1;Parent=MS.gene98040.t1 |
| Gene Sequence |
| Protein sequence |
