Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98220.t1 | XP_013443370.1 | 88.3 | 777 | 40 | 4 | 1 | 752 | 1 | 751 | 0.00E+00 | 1116.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98220.t1 | Q9LK27 | 44.4 | 738 | 327 | 16 | 22 | 740 | 33 | 706 | 1.0e-118 | 429.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98220.t1 | A0A072TV39 | 88.3 | 777 | 40 | 4 | 1 | 752 | 1 | 751 | 0.0e+00 | 1116.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049190 | MS.gene98220 | 0.812389 | 4.35E-51 | -1.69E-46 |
MS.gene049404 | MS.gene98220 | 0.829036 | 6.44E-55 | -1.69E-46 |
MS.gene050559 | MS.gene98220 | 0.805138 | 1.54E-49 | -1.69E-46 |
MS.gene051744 | MS.gene98220 | 0.812199 | 4.78E-51 | -1.69E-46 |
MS.gene053195 | MS.gene98220 | 0.801235 | 9.91E-49 | -1.69E-46 |
MS.gene053226 | MS.gene98220 | 0.831619 | 1.51E-55 | -1.69E-46 |
MS.gene05364 | MS.gene98220 | 0.82014 | 8.03E-53 | -1.69E-46 |
MS.gene054651 | MS.gene98220 | 0.831606 | 1.52E-55 | -1.69E-46 |
MS.gene055694 | MS.gene98220 | 0.8314 | 1.71E-55 | -1.69E-46 |
MS.gene056050 | MS.gene98220 | 0.815457 | 9.16E-52 | -1.69E-46 |
MS.gene056366 | MS.gene98220 | 0.818307 | 2.10E-52 | -1.69E-46 |
MS.gene05686 | MS.gene98220 | 0.816831 | 4.52E-52 | -1.69E-46 |
MS.gene057444 | MS.gene98220 | 0.807546 | 4.80E-50 | -1.69E-46 |
MS.gene058009 | MS.gene98220 | 0.811605 | 6.44E-51 | -1.69E-46 |
MS.gene058010 | MS.gene98220 | 0.809579 | 1.77E-50 | -1.69E-46 |
MS.gene058625 | MS.gene98220 | 0.802012 | 6.87E-49 | -1.69E-46 |
MS.gene058783 | MS.gene98220 | 0.803085 | 4.12E-49 | -1.69E-46 |
MS.gene058979 | MS.gene98220 | 0.818262 | 2.15E-52 | -1.69E-46 |
MS.gene060587 | MS.gene98220 | 0.801232 | 9.92E-49 | -1.69E-46 |
MS.gene060935 | MS.gene98220 | 0.801964 | 7.02E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98220.t1 | MTR_0018s0090 | 91.120 | 777 | 18 | 4 | 1 | 752 | 1 | 751 | 0.0 | 1262 |
MS.gene98220.t1 | MTR_0018s0090 | 89.286 | 644 | 18 | 4 | 1 | 619 | 1 | 618 | 0.0 | 1038 |
MS.gene98220.t1 | MTR_3g075040 | 47.730 | 727 | 330 | 14 | 41 | 752 | 88 | 779 | 4.14e-165 | 496 |
MS.gene98220.t1 | MTR_3g075040 | 43.058 | 569 | 276 | 12 | 41 | 595 | 88 | 622 | 1.76e-123 | 383 |
MS.gene98220.t1 | MTR_2g091135 | 37.500 | 264 | 141 | 8 | 171 | 412 | 305 | 566 | 9.65e-43 | 165 |
MS.gene98220.t1 | MTR_2g091135 | 37.500 | 264 | 141 | 8 | 171 | 412 | 305 | 566 | 1.44e-42 | 164 |
MS.gene98220.t1 | MTR_2g018270 | 61.386 | 101 | 39 | 0 | 177 | 277 | 83 | 183 | 4.22e-37 | 146 |
MS.gene98220.t1 | MTR_2g018270 | 41.714 | 175 | 84 | 6 | 567 | 733 | 335 | 499 | 6.86e-21 | 97.4 |
MS.gene98220.t1 | MTR_4g079650 | 37.097 | 248 | 104 | 7 | 171 | 398 | 653 | 868 | 1.43e-35 | 145 |
MS.gene98220.t1 | MTR_4g079650 | 41.206 | 199 | 94 | 4 | 171 | 350 | 653 | 847 | 1.53e-35 | 145 |
MS.gene98220.t1 | MTR_4g079650 | 37.097 | 248 | 104 | 7 | 171 | 398 | 653 | 868 | 2.23e-35 | 144 |
MS.gene98220.t1 | MTR_2g091130 | 32.955 | 352 | 180 | 12 | 171 | 489 | 294 | 622 | 1.64e-33 | 137 |
MS.gene98220.t1 | MTR_4g092900 | 31.755 | 359 | 169 | 13 | 174 | 472 | 145 | 487 | 2.90e-33 | 135 |
MS.gene98220.t1 | MTR_4g092880 | 30.445 | 427 | 203 | 14 | 101 | 472 | 76 | 463 | 5.55e-33 | 134 |
MS.gene98220.t1 | MTR_4g092880 | 54.286 | 105 | 48 | 0 | 174 | 278 | 149 | 253 | 3.25e-31 | 126 |
MS.gene98220.t1 | MTR_4g092900 | 30.750 | 400 | 190 | 14 | 174 | 502 | 145 | 528 | 7.57e-29 | 122 |
MS.gene98220.t1 | MTR_8g070660 | 36.264 | 182 | 106 | 4 | 101 | 278 | 26 | 201 | 4.85e-24 | 103 |
MS.gene98220.t1 | MTR_8g070660 | 36.264 | 182 | 106 | 4 | 101 | 278 | 26 | 201 | 6.47e-24 | 104 |
MS.gene98220.t1 | MTR_6g033375 | 27.232 | 224 | 158 | 3 | 173 | 392 | 68 | 290 | 8.31e-22 | 97.8 |
MS.gene98220.t1 | MTR_2g437920 | 43.434 | 99 | 53 | 3 | 188 | 283 | 146 | 244 | 2.83e-16 | 82.0 |
MS.gene98220.t1 | MTR_5g069490 | 29.515 | 227 | 125 | 8 | 186 | 400 | 111 | 314 | 9.57e-16 | 79.7 |
MS.gene98220.t1 | MTR_8g062330 | 40.206 | 97 | 55 | 2 | 179 | 274 | 345 | 439 | 1.29e-12 | 71.2 |
MS.gene98220.t1 | MTR_3g052530 | 37.391 | 115 | 69 | 2 | 180 | 294 | 158 | 269 | 1.80e-12 | 71.2 |
MS.gene98220.t1 | MTR_3g052530 | 37.391 | 115 | 69 | 2 | 180 | 294 | 158 | 269 | 2.18e-12 | 71.2 |
MS.gene98220.t1 | MTR_3g052530 | 37.391 | 115 | 69 | 2 | 180 | 294 | 161 | 272 | 2.30e-12 | 71.2 |
MS.gene98220.t1 | MTR_3g052530 | 40.594 | 101 | 57 | 2 | 180 | 280 | 158 | 255 | 6.06e-12 | 69.7 |
MS.gene98220.t1 | MTR_3g052530 | 40.594 | 101 | 57 | 2 | 180 | 280 | 161 | 258 | 6.97e-12 | 69.7 |
MS.gene98220.t1 | MTR_3g052530 | 40.594 | 101 | 57 | 2 | 180 | 280 | 158 | 255 | 7.02e-12 | 69.7 |
MS.gene98220.t1 | MTR_5g093070 | 39.423 | 104 | 60 | 2 | 180 | 283 | 207 | 307 | 9.62e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98220.t1 | AT5G14270 | 45.810 | 716 | 312 | 12 | 42 | 752 | 44 | 688 | 2.86e-175 | 519 |
MS.gene98220.t1 | AT5G14270 | 45.810 | 716 | 312 | 12 | 42 | 752 | 44 | 688 | 2.86e-175 | 519 |
MS.gene98220.t1 | AT5G14270 | 45.810 | 716 | 311 | 13 | 43 | 752 | 45 | 689 | 3.14e-174 | 516 |
MS.gene98220.t1 | AT3G27260 | 44.444 | 774 | 337 | 17 | 8 | 752 | 9 | 718 | 1.55e-173 | 515 |
MS.gene98220.t1 | AT3G27260 | 43.848 | 764 | 336 | 17 | 8 | 742 | 9 | 708 | 1.68e-165 | 498 |
MS.gene98220.t1 | AT3G27260 | 59.649 | 57 | 23 | 0 | 696 | 752 | 757 | 813 | 2.55e-11 | 67.8 |
MS.gene98220.t1 | AT3G27260 | 44.813 | 723 | 321 | 14 | 34 | 742 | 1 | 659 | 1.97e-165 | 496 |
MS.gene98220.t1 | AT3G27260 | 59.649 | 57 | 23 | 0 | 696 | 752 | 708 | 764 | 2.33e-11 | 67.8 |
MS.gene98220.t1 | AT3G27260 | 43.540 | 774 | 333 | 18 | 8 | 742 | 9 | 717 | 1.36e-164 | 496 |
MS.gene98220.t1 | AT3G27260 | 59.649 | 57 | 23 | 0 | 696 | 752 | 766 | 822 | 2.77e-11 | 67.8 |
MS.gene98220.t1 | AT5G63320 | 41.808 | 708 | 343 | 15 | 44 | 727 | 55 | 717 | 4.97e-125 | 399 |
MS.gene98220.t1 | AT3G01770 | 38.569 | 713 | 309 | 17 | 42 | 752 | 35 | 620 | 1.50e-119 | 373 |
MS.gene98220.t1 | AT5G63320 | 38.940 | 434 | 217 | 8 | 44 | 474 | 55 | 443 | 1.23e-83 | 274 |
MS.gene98220.t1 | AT5G63320 | 38.940 | 434 | 217 | 8 | 44 | 474 | 55 | 443 | 1.23e-83 | 274 |
MS.gene98220.t1 | AT3G01770 | 39.540 | 435 | 199 | 11 | 42 | 474 | 35 | 407 | 9.12e-83 | 272 |
MS.gene98220.t1 | AT1G06230 | 35.573 | 253 | 136 | 4 | 169 | 396 | 417 | 667 | 1.33e-36 | 147 |
MS.gene98220.t1 | AT1G06230 | 35.573 | 253 | 136 | 4 | 169 | 396 | 417 | 667 | 1.33e-36 | 147 |
MS.gene98220.t1 | AT1G06230 | 35.573 | 253 | 136 | 4 | 169 | 396 | 417 | 667 | 1.33e-36 | 147 |
MS.gene98220.t1 | AT1G06230 | 35.573 | 253 | 136 | 4 | 169 | 396 | 417 | 667 | 1.33e-36 | 147 |
MS.gene98220.t1 | AT1G73150 | 34.118 | 255 | 132 | 7 | 173 | 396 | 119 | 368 | 2.92e-34 | 136 |
MS.gene98220.t1 | AT1G73150 | 34.118 | 255 | 132 | 7 | 173 | 396 | 119 | 368 | 3.36e-34 | 137 |
MS.gene98220.t1 | AT5G46550 | 55.446 | 101 | 45 | 0 | 177 | 277 | 73 | 173 | 1.64e-32 | 132 |
MS.gene98220.t1 | AT1G17790 | 33.624 | 229 | 103 | 4 | 47 | 275 | 55 | 234 | 8.34e-30 | 124 |
MS.gene98220.t1 | AT5G65630 | 33.043 | 230 | 124 | 4 | 52 | 278 | 72 | 274 | 9.54e-30 | 125 |
MS.gene98220.t1 | AT5G10550 | 47.170 | 106 | 56 | 0 | 173 | 278 | 174 | 279 | 1.98e-26 | 115 |
MS.gene98220.t1 | AT2G34900 | 40.952 | 105 | 62 | 0 | 174 | 278 | 1 | 105 | 1.36e-23 | 101 |
MS.gene98220.t1 | AT2G34900 | 41.509 | 106 | 62 | 0 | 173 | 278 | 110 | 215 | 1.84e-23 | 103 |
MS.gene98220.t1 | AT3G52280 | 36.697 | 109 | 66 | 1 | 173 | 278 | 94 | 202 | 5.36e-17 | 84.0 |
MS.gene98220.t1 | AT3G52280 | 36.697 | 109 | 66 | 1 | 173 | 278 | 111 | 219 | 8.42e-17 | 83.6 |
MS.gene98220.t1 | AT5G55040 | 37.736 | 106 | 64 | 1 | 175 | 280 | 189 | 292 | 7.21e-11 | 66.2 |
MS.gene98220.t1 | AT5G55040 | 37.736 | 106 | 64 | 1 | 175 | 280 | 189 | 292 | 7.21e-11 | 66.2 |
Find 172 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAATGAGAATTCTCAATTTC+TGG | 0.142786 | 7.1:-57465560 | MS.gene98220:CDS |
TTCTCAATTTCTGGAAGATT+TGG | 0.199570 | 7.1:-57465551 | MS.gene98220:CDS |
CCCTCTTCTACATCATTTAC+AGG | 0.202461 | 7.1:+57465346 | None:intergenic |
GCAATTCGATAAAGTTTATC+AGG | 0.210697 | 7.1:+57466151 | None:intergenic |
TCATCGTTGCAAGCATTTAA+AGG | 0.216922 | 7.1:-57472797 | MS.gene98220:intron |
TCTACATCATTTACAGGATT+TGG | 0.229751 | 7.1:+57465352 | None:intergenic |
GTTCAAATTACGAAAGCTTT+TGG | 0.232454 | 7.1:-57473047 | MS.gene98220:CDS |
GCACCAGTGCTTATAATTTC+TGG | 0.247066 | 7.1:+57468970 | None:intergenic |
GATGAAGAGGTCAACATTAT+TGG | 0.261522 | 7.1:-57472685 | MS.gene98220:CDS |
TTGAGGAGGAGGGATAATTT+TGG | 0.296813 | 7.1:+57473264 | None:intergenic |
GAGGATACTTTGATCAATTC+AGG | 0.297174 | 7.1:-57474123 | MS.gene98220:CDS |
CATAACGCATCCTATGGATT+TGG | 0.321260 | 7.1:-57473584 | MS.gene98220:CDS |
AACAGTGAATTTGCAGTTCC+AGG | 0.325521 | 7.1:+57473718 | None:intergenic |
TGATTTCCTCGAGGTTTCTA+TGG | 0.328466 | 7.1:+57473843 | None:intergenic |
GCAAAATATTGGTAAAGAAT+TGG | 0.331084 | 7.1:-57473194 | MS.gene98220:CDS |
TTCACTGGTGTTTGTCTTCG+TGG | 0.358694 | 7.1:+57473354 | None:intergenic |
TAAGGGTATCAGCCATGATA+TGG | 0.360072 | 7.1:+57473446 | None:intergenic |
AGTTATCCCACCTGCTAAAC+TGG | 0.360870 | 7.1:-57473236 | MS.gene98220:CDS |
CTCAAGCTCCCTCTTTCGTC+TGG | 0.363863 | 7.1:+57465717 | None:intergenic |
ATGGCTAAGAGTAGGCATTC+TGG | 0.364929 | 7.1:-57474213 | MS.gene98220:CDS |
AAAGAAAACAACTTGCCAAT+AGG | 0.373479 | 7.1:-57474038 | MS.gene98220:CDS |
CTGTTGATGAAGCACAAATT+TGG | 0.376302 | 7.1:-57473667 | MS.gene98220:CDS |
GGGATGGGTAGTTTCAAGTT+TGG | 0.383638 | 7.1:-57465454 | MS.gene98220:CDS |
TCGTTTCGAAATATTTACTA+AGG | 0.383833 | 7.1:+57473428 | None:intergenic |
ATGATATGGACATCAGTCTT+AGG | 0.401384 | 7.1:+57473460 | None:intergenic |
GACTTGAACATTTACTCGTT+TGG | 0.402940 | 7.1:+57472572 | None:intergenic |
TTGAAAGAACATAGTTCAAA+TGG | 0.405523 | 7.1:-57473130 | MS.gene98220:CDS |
ATAACGCATCCTATGGATTT+GGG | 0.423894 | 7.1:-57473583 | MS.gene98220:CDS |
TGGGTAGTTTCAAGTTTGGT+GGG | 0.424393 | 7.1:-57465450 | MS.gene98220:CDS |
AAGCTCAGACTTAAACCTAT+TGG | 0.425510 | 7.1:+57474023 | None:intergenic |
CAGGCACGAACTTGTTTGCC+TGG | 0.434968 | 7.1:-57473736 | MS.gene98220:CDS |
ATAACTTGAGGTTGAGGAGG+AGG | 0.435617 | 7.1:+57473253 | None:intergenic |
AATCAAGAGAGGCAAAATAT+TGG | 0.437241 | 7.1:-57473205 | MS.gene98220:CDS |
TTTCAAATGCAGAAGAGAAA+TGG | 0.442165 | 7.1:-57473973 | MS.gene98220:CDS |
TCAATATCTGCTTCCGTACA+AGG | 0.443155 | 7.1:-57473883 | MS.gene98220:CDS |
GACAAAGGAACAAGTTGCAT+TGG | 0.446112 | 7.1:+57474078 | None:intergenic |
TTGAGAGTCAGTTGATGGCT+TGG | 0.447633 | 7.1:-57466357 | MS.gene98220:intron |
ATGGGTAGTTTCAAGTTTGG+TGG | 0.448417 | 7.1:-57465451 | MS.gene98220:CDS |
CAGTGTCATAACGCATCCTA+TGG | 0.450024 | 7.1:-57473590 | MS.gene98220:CDS |
TTTCAAGAAATCAATGATGT+AGG | 0.454715 | 7.1:+57473147 | None:intergenic |
TGATGGCTTGGATAAATTTG+AGG | 0.455041 | 7.1:-57466345 | MS.gene98220:CDS |
GTTTAAGTCTGAGCTTGAAC+GGG | 0.456800 | 7.1:-57474016 | MS.gene98220:CDS |
AACGGTGGAGAATCATTTCT+AGG | 0.460214 | 7.1:+57473379 | None:intergenic |
GGTGGTTTGTACATCTTCAC+TGG | 0.460901 | 7.1:+57473339 | None:intergenic |
TCACTGGTGTTTGTCTTCGT+GGG | 0.464210 | 7.1:+57473355 | None:intergenic |
ACAGGAGGATGGCTCGTGAC+AGG | 0.468032 | 7.1:+57472619 | None:intergenic |
TTTAGAAGGAGGCATTGGTC+TGG | 0.472306 | 7.1:+57473318 | None:intergenic |
AACGGTTTCAATTTATTCCC+TGG | 0.475915 | 7.1:+57473817 | None:intergenic |
TACTGTTTCCGAGGAGGAGG+AGG | 0.483253 | 7.1:-57474142 | MS.gene98220:CDS |
CATAGTTCAAATGGTAAAGA+AGG | 0.484879 | 7.1:-57473121 | MS.gene98220:CDS |
GGGAATAAATTGAAACCGTT+AGG | 0.493247 | 7.1:-57473814 | MS.gene98220:CDS |
TTCGACATAACCAGTTTAGC+AGG | 0.495088 | 7.1:+57473226 | None:intergenic |
TAACTTGAGGTTGAGGAGGA+GGG | 0.499619 | 7.1:+57473254 | None:intergenic |
GAACATGGTAATTGCTCAGC+AGG | 0.502352 | 7.1:+57465511 | None:intergenic |
TTCAACTTAACCACATCCAC+AGG | 0.502751 | 7.1:+57473628 | None:intergenic |
AGATCCTGAGAAAATGCGTC+TGG | 0.502989 | 7.1:-57465944 | MS.gene98220:CDS |
TCAGGTCGACGAGGGGCGTA+TGG | 0.506447 | 7.1:-57474105 | MS.gene98220:CDS |
GTTATGACACTGAAATAGTC+AGG | 0.508133 | 7.1:+57473601 | None:intergenic |
AGAAGGAGGCATTGGTCTGG+TGG | 0.508164 | 7.1:+57473321 | None:intergenic |
TGGAATTTGCTGCTGATGTG+AGG | 0.509245 | 7.1:-57473516 | MS.gene98220:CDS |
TGTACTGTTCCCAAATCCAT+AGG | 0.509426 | 7.1:+57473574 | None:intergenic |
TGTACGGAAGCAGATATTGA+AGG | 0.509833 | 7.1:+57473886 | None:intergenic |
TATAAGCACTGGTGCTCAGA+TGG | 0.510021 | 7.1:-57468962 | MS.gene98220:CDS |
GGTTGTGGTTAGGGTGTGAA+GGG | 0.510992 | 7.1:-57465967 | MS.gene98220:intron |
GTAAATATTTCGAAACGAGA+TGG | 0.511284 | 7.1:-57473423 | MS.gene98220:CDS |
AGTTGAAGCATGTGAAATAG+AGG | 0.512491 | 7.1:-57472987 | MS.gene98220:intron |
TGGTTGTGGTTAGGGTGTGA+AGG | 0.512870 | 7.1:-57465968 | MS.gene98220:intron |
TGAACATTTACTCGTTTGGT+AGG | 0.513583 | 7.1:+57472576 | None:intergenic |
GATGAAGCACAAATTTGGTT+GGG | 0.516359 | 7.1:-57473662 | MS.gene98220:CDS |
TGCACGACAAGCACTGCTAC+AGG | 0.518154 | 7.1:-57465686 | MS.gene98220:intron |
GTGTTTGTCTTCGTGGGCAA+CGG | 0.519404 | 7.1:+57473361 | None:intergenic |
GGTCAACATTATTGGAAATG+AGG | 0.520393 | 7.1:-57472677 | MS.gene98220:CDS |
GTCCTGATGACTCTCAGAAT+GGG | 0.520588 | 7.1:-57465474 | MS.gene98220:CDS |
ACGAGTAAATGTTCAAGTCC+AGG | 0.522410 | 7.1:-57472568 | MS.gene98220:CDS |
ATCCCATTCTGAGAGTCATC+AGG | 0.522555 | 7.1:+57465472 | None:intergenic |
GTTGAGGATGAAGAGGAAGA+AGG | 0.523131 | 7.1:-57465391 | MS.gene98220:CDS |
GTTTGGTGGGAGTAATCCCT+TGG | 0.524182 | 7.1:-57465437 | MS.gene98220:CDS |
TTGGAGATGGAACGACGAAA+AGG | 0.525311 | 7.1:-57465910 | MS.gene98220:intron |
ACAGGATTTGGAACACAAAG+TGG | 0.526603 | 7.1:+57465364 | None:intergenic |
AAGCCTCGTGGATGGAATAG+AGG | 0.526795 | 7.1:-57473781 | MS.gene98220:CDS |
GTACAAAACAAGATTGCTAA+AGG | 0.529289 | 7.1:-57473556 | MS.gene98220:CDS |
TCCTCCTGTAGTGATTGAAA+AGG | 0.529502 | 7.1:-57472605 | MS.gene98220:CDS |
CAGGAGGATGGCTCGTGACA+GGG | 0.532677 | 7.1:+57472620 | None:intergenic |
CCACACTTACCACTGCTCCC+TGG | 0.534511 | 7.1:+57472550 | None:intergenic |
ACTTACTGTTTCCGAGGAGG+AGG | 0.534737 | 7.1:-57474145 | MS.gene98220:CDS |
TTGTGGAAAGTTTGAGACTC+AGG | 0.534785 | 7.1:-57473755 | MS.gene98220:CDS |
AGGATCATACACAGGCCCAT+TGG | 0.535323 | 7.1:-57473536 | MS.gene98220:CDS |
TGCTGAAGAAGCTAGAAAGC+GGG | 0.537428 | 7.1:-57465764 | MS.gene98220:CDS |
AATAAATAATGGCTAAGAGT+AGG | 0.537756 | 7.1:-57474221 | None:intergenic |
AAGAAATCAATGATGTAGGC+AGG | 0.537972 | 7.1:+57473151 | None:intergenic |
TTTGCTTGTAGGTAATGATC+CGG | 0.540246 | 7.1:-57472710 | MS.gene98220:intron |
AGTCCTGATGACTCTCAGAA+TGG | 0.541291 | 7.1:-57465475 | MS.gene98220:CDS |
ACATCAGCAGCAAATTCCAA+TGG | 0.541597 | 7.1:+57473520 | None:intergenic |
TCCTGTAAATGATGTAGAAG+AGG | 0.542521 | 7.1:-57465347 | MS.gene98220:CDS |
CGTTTCGAAATATTTACTAA+GGG | 0.543275 | 7.1:+57473429 | None:intergenic |
AGGATTGTATATTAAAGTTG+AGG | 0.543967 | 7.1:-57465407 | MS.gene98220:CDS |
ACCTCGAGGAAATCAGTACC+AGG | 0.544906 | 7.1:-57473835 | MS.gene98220:CDS |
TACAATCCTAGTTGTTCCAA+GGG | 0.548264 | 7.1:+57465421 | None:intergenic |
TAAGACTGATGTCCATATCA+TGG | 0.549025 | 7.1:-57473458 | MS.gene98220:CDS |
TGATCAATTCAGGTCGACGA+GGG | 0.549809 | 7.1:-57474113 | MS.gene98220:CDS |
CTTGTCTCGTCCACAGAACA+TGG | 0.550433 | 7.1:+57465496 | None:intergenic |
TATTAAAGTTGAGGATGAAG+AGG | 0.551254 | 7.1:-57465398 | MS.gene98220:CDS |
CCTGTAAATGATGTAGAAGA+GGG | 0.552075 | 7.1:-57465346 | MS.gene98220:CDS |
GATGAAGAGGTGGACATTTG+TGG | 0.553282 | 7.1:-57472652 | MS.gene98220:CDS |
ATGTTGACCTCTTCATCAGC+CGG | 0.554476 | 7.1:+57472691 | None:intergenic |
TGATGAAGCACAAATTTGGT+TGG | 0.558662 | 7.1:-57473663 | MS.gene98220:CDS |
GTACCAGAAATTATAAGCAC+TGG | 0.559163 | 7.1:-57468973 | MS.gene98220:CDS |
GGCTTCTGAGTCTGACCTAA+CGG | 0.559560 | 7.1:+57473799 | None:intergenic |
CTGCGGAATCCAGACGAAAG+AGG | 0.562866 | 7.1:-57465726 | MS.gene98220:CDS |
TTTGTCTTCGTGGGCAACGG+TGG | 0.563282 | 7.1:+57473364 | None:intergenic |
GGTGGGATAACTTGAGGTTG+AGG | 0.564668 | 7.1:+57473247 | None:intergenic |
TGATGACTCTCAGAATGGGA+TGG | 0.566701 | 7.1:-57465470 | MS.gene98220:CDS |
TTTCACTTGATTCCCTTGTA+CGG | 0.567344 | 7.1:+57473870 | None:intergenic |
GGTTTAAGTCTGAGCTTGAA+CGG | 0.568375 | 7.1:-57474017 | MS.gene98220:CDS |
CATCAGCAGCAAATTCCAAT+GGG | 0.568510 | 7.1:+57473521 | None:intergenic |
AGACTCAGAAGCCTCGTGGA+TGG | 0.568729 | 7.1:-57473789 | MS.gene98220:CDS |
CGAGTAAATGTTCAAGTCCA+GGG | 0.568800 | 7.1:-57472567 | MS.gene98220:CDS |
CAATTCGATAAAGTTTATCA+GGG | 0.569763 | 7.1:+57466152 | None:intergenic |
TACTGAACTTACTGTTTCCG+AGG | 0.570048 | 7.1:-57474151 | MS.gene98220:CDS |
TTCAGAAGTATGAGCAGCAG+TGG | 0.570546 | 7.1:+57468930 | None:intergenic |
ATACAATCCTAGTTGTTCCA+AGG | 0.572163 | 7.1:+57465420 | None:intergenic |
TGCGGAATCCAGACGAAAGA+GGG | 0.572514 | 7.1:-57465725 | MS.gene98220:CDS |
GACTATGATAGCTTTCAAGA+TGG | 0.574299 | 7.1:-57466293 | MS.gene98220:intron |
CAAAGTATCCTCCTCCTCCT+CGG | 0.574317 | 7.1:+57474134 | None:intergenic |
GGATGGAATAGAGGCACTTG+TGG | 0.578022 | 7.1:-57473772 | MS.gene98220:CDS |
TAATGATCCGGCTGATGAAG+AGG | 0.578523 | 7.1:-57472698 | MS.gene98220:CDS |
TTAGCAGGTGGGATAACTTG+AGG | 0.578736 | 7.1:+57473241 | None:intergenic |
GGCAGAAGAAGAAGCTGCTG+CGG | 0.580854 | 7.1:-57465743 | MS.gene98220:CDS |
GCTTGCAACGATGAATTGCT+TGG | 0.582867 | 7.1:+57472806 | None:intergenic |
GGGATAACTTGAGGTTGAGG+AGG | 0.584461 | 7.1:+57473250 | None:intergenic |
AGTCGTTGTATCCGATGGCT+CGG | 0.586025 | 7.1:-57474175 | MS.gene98220:CDS |
CAATATCTGCTTCCGTACAA+GGG | 0.589567 | 7.1:-57473882 | MS.gene98220:CDS |
GATGACTCTCAGAATGGGAT+GGG | 0.590499 | 7.1:-57465469 | MS.gene98220:CDS |
TTTCAATCACTACAGGAGGA+TGG | 0.592776 | 7.1:+57472608 | None:intergenic |
TGATGATGAAGCAATACCAC+AGG | 0.595206 | 7.1:-57471265 | MS.gene98220:CDS |
TGGAAATGAGGCTGATGAAG+AGG | 0.597555 | 7.1:-57472665 | MS.gene98220:CDS |
AAGGCTACAAGCAGAAGCGA+AGG | 0.598802 | 7.1:-57465788 | MS.gene98220:CDS |
AAGTTCAGTAGCCGAGCCAT+CGG | 0.604973 | 7.1:+57474164 | None:intergenic |
CCCTGGTACTGATTTCCTCG+AGG | 0.606341 | 7.1:+57473834 | None:intergenic |
AATACCACAGGATTTATCAA+AGG | 0.612132 | 7.1:-57471253 | MS.gene98220:intron |
TGTTCAAGTCCAGGGAGCAG+TGG | 0.614725 | 7.1:-57472559 | MS.gene98220:intron |
AGGAGGATGGCTCGTGACAG+GGG | 0.616238 | 7.1:+57472621 | None:intergenic |
GATCAATTCAGGTCGACGAG+GGG | 0.617702 | 7.1:-57474112 | MS.gene98220:CDS |
ATTGCAGATTCGGACTCTAG+TGG | 0.618288 | 7.1:-57471306 | MS.gene98220:intron |
TCAAGTTGTCTATTTGACCA+CGG | 0.619949 | 7.1:+57473914 | None:intergenic |
TCGAGAAAAGACACTGACCC+AGG | 0.622144 | 7.1:-57466089 | MS.gene98220:intron |
GACATAACCAGTTTAGCAGG+TGG | 0.626935 | 7.1:+57473229 | None:intergenic |
TGTAAATGATGTAGAAGAGG+GGG | 0.628070 | 7.1:-57465344 | MS.gene98220:CDS |
ATTCTTGAGCAGAAAAGGCA+AGG | 0.631468 | 7.1:-57465807 | MS.gene98220:intron |
ATATGGACATCAGTCTTAGG+TGG | 0.634512 | 7.1:+57473463 | None:intergenic |
GGTCAGACTCAGAAGCCTCG+TGG | 0.635090 | 7.1:-57473793 | MS.gene98220:CDS |
ACATAACCAGTTTAGCAGGT+GGG | 0.635920 | 7.1:+57473230 | None:intergenic |
AGTAATCCCTTGGAACAACT+AGG | 0.636386 | 7.1:-57465427 | MS.gene98220:CDS |
TCAACTTAACCACATCCACA+GGG | 0.640140 | 7.1:+57473629 | None:intergenic |
GAAACAGTCGTTGTATCCGA+TGG | 0.640912 | 7.1:-57474180 | MS.gene98220:CDS |
TTGATCAATTCAGGTCGACG+AGG | 0.659743 | 7.1:-57474114 | MS.gene98220:CDS |
TGAACTTACTGTTTCCGAGG+AGG | 0.660482 | 7.1:-57474148 | MS.gene98220:CDS |
AAATGAGGCTGATGAAGAGG+TGG | 0.664901 | 7.1:-57472662 | MS.gene98220:CDS |
TGGTTATGTCGAATCAAGAG+AGG | 0.666624 | 7.1:-57473216 | MS.gene98220:CDS |
CTGCTGAAGAAGCTAGAAAG+CGG | 0.666877 | 7.1:-57465765 | MS.gene98220:CDS |
ATATTAATATCACTAGAAGA+CGG | 0.668747 | 7.1:+57473940 | None:intergenic |
CTGTAAATGATGTAGAAGAG+GGG | 0.674177 | 7.1:-57465345 | MS.gene98220:CDS |
AGTGATATTAATATCAACCG+TGG | 0.675985 | 7.1:-57473931 | MS.gene98220:CDS |
CAGACCTTTGATAAATCCTG+TGG | 0.677406 | 7.1:+57471249 | None:intergenic |
ATTGCTAAAGGATCATACAC+AGG | 0.681908 | 7.1:-57473544 | MS.gene98220:CDS |
GCTAAGAGTAGGCATTCTGG+AGG | 0.694361 | 7.1:-57474210 | MS.gene98220:CDS |
AATTCGATAAAGTTTATCAG+GGG | 0.701078 | 7.1:+57466153 | None:intergenic |
CCTCGAGGAAATCAGTACCA+GGG | 0.711757 | 7.1:-57473834 | MS.gene98220:CDS |
AAACATCCATAGAAACCTCG+AGG | 0.714846 | 7.1:-57473849 | MS.gene98220:CDS |
TGAGCAATTACCATGTTCTG+TGG | 0.724551 | 7.1:-57465506 | MS.gene98220:CDS |
CAACTTAACCACATCCACAG+GGG | 0.763085 | 7.1:+57473630 | None:intergenic |
GTGCCTCTATTCCATCCACG+AGG | 0.777083 | 7.1:+57473778 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 57465333 | 57474235 | 57465333 | ID=MS.gene98220 |
chr7.1 | mRNA | 57465333 | 57474235 | 57465333 | ID=MS.gene98220.t1;Parent=MS.gene98220 |
chr7.1 | exon | 57472988 | 57474235 | 57472988 | ID=MS.gene98220.t1.exon1;Parent=MS.gene98220.t1 |
chr7.1 | CDS | 57472988 | 57474235 | 57472988 | ID=cds.MS.gene98220.t1;Parent=MS.gene98220.t1 |
chr7.1 | exon | 57472798 | 57472846 | 57472798 | ID=MS.gene98220.t1.exon2;Parent=MS.gene98220.t1 |
chr7.1 | CDS | 57472798 | 57472846 | 57472798 | ID=cds.MS.gene98220.t1;Parent=MS.gene98220.t1 |
chr7.1 | exon | 57472560 | 57472721 | 57472560 | ID=MS.gene98220.t1.exon3;Parent=MS.gene98220.t1 |
chr7.1 | CDS | 57472560 | 57472721 | 57472560 | ID=cds.MS.gene98220.t1;Parent=MS.gene98220.t1 |
chr7.1 | exon | 57471254 | 57471321 | 57471254 | ID=MS.gene98220.t1.exon4;Parent=MS.gene98220.t1 |
chr7.1 | CDS | 57471254 | 57471321 | 57471254 | ID=cds.MS.gene98220.t1;Parent=MS.gene98220.t1 |
chr7.1 | exon | 57468923 | 57468995 | 57468923 | ID=MS.gene98220.t1.exon5;Parent=MS.gene98220.t1 |
chr7.1 | CDS | 57468923 | 57468995 | 57468923 | ID=cds.MS.gene98220.t1;Parent=MS.gene98220.t1 |
chr7.1 | exon | 57466294 | 57466368 | 57466294 | ID=MS.gene98220.t1.exon6;Parent=MS.gene98220.t1 |
chr7.1 | CDS | 57466294 | 57466368 | 57466294 | ID=cds.MS.gene98220.t1;Parent=MS.gene98220.t1 |
chr7.1 | exon | 57466090 | 57466205 | 57466090 | ID=MS.gene98220.t1.exon7;Parent=MS.gene98220.t1 |
chr7.1 | CDS | 57466090 | 57466205 | 57466090 | ID=cds.MS.gene98220.t1;Parent=MS.gene98220.t1 |
chr7.1 | exon | 57465911 | 57465977 | 57465911 | ID=MS.gene98220.t1.exon8;Parent=MS.gene98220.t1 |
chr7.1 | CDS | 57465911 | 57465977 | 57465911 | ID=cds.MS.gene98220.t1;Parent=MS.gene98220.t1 |
chr7.1 | exon | 57465687 | 57465817 | 57465687 | ID=MS.gene98220.t1.exon9;Parent=MS.gene98220.t1 |
chr7.1 | CDS | 57465687 | 57465817 | 57465687 | ID=cds.MS.gene98220.t1;Parent=MS.gene98220.t1 |
chr7.1 | exon | 57465333 | 57465602 | 57465333 | ID=MS.gene98220.t1.exon10;Parent=MS.gene98220.t1 |
chr7.1 | CDS | 57465333 | 57465602 | 57465333 | ID=cds.MS.gene98220.t1;Parent=MS.gene98220.t1 |
Gene Sequence |
Protein sequence |