AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080047793.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080047793.01.T01 MTR_4g134790 84.783 138 14 4 66 200 87 220 3.59e-56 192
MsG0080047793.01.T01 MTR_4g134790 84.783 138 14 4 66 200 87 220 3.99e-56 192
MsG0080047793.01.T01 MTR_3g462680 59.459 74 27 2 2 75 166 236 6.15e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080047793.01.T01 AT1G58060 50.505 99 43 2 68 163 103 198 1.53e-23 99.0
MsG0080047793.01.T01 AT1G58050 42.424 99 53 2 68 162 101 199 5.08e-18 82.8

Find 46 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATAAATCATGAACTCTT+TGG 0.338280 contig103end:-47993 None:intergenic
TTAGCAAGAGATTGATGAAA+TGG 0.375068 contig103end:+46014 MsG0080047793.01.T01:CDS
AGAGAAACACAGTCTGAGAT+TGG 0.391130 contig103end:+46160 MsG0080047793.01.T01:CDS
TACATTCTTCTCAAGCAGAT+TGG 0.402219 contig103end:+47586 MsG0080047793.01.T01:CDS
CTTGAGTGGAAGTTCATTAC+CGG 0.405080 contig103end:-47388 None:intergenic
CCCTCTCAAGGAGGTTCTGT+TGG 0.419765 contig103end:+47435 MsG0080047793.01.T01:CDS
GAAAATTATACTTGGGAAGA+TGG 0.419877 contig103end:+47730 MsG0080047793.01.T01:CDS
CACAAACAACACACAATTCA+AGG 0.429066 contig103end:+47472 MsG0080047793.01.T01:CDS
CTTCTCAAGCAGATTGGATC+AGG 0.431726 contig103end:+47592 MsG0080047793.01.T01:CDS
AGAGATTGATGAAATGGAAA+AGG 0.432041 contig103end:+46020 MsG0080047793.01.T01:CDS
TGCAGGATGAAAATTATACT+TGG 0.434487 contig103end:+47722 MsG0080047793.01.T01:intron
CGAGTCAAGATCATAAATCA+TGG 0.446588 contig103end:-47947 None:intergenic
TGTGGATTAAAAGCGGAGAT+TGG 0.460995 contig103end:-47533 None:intergenic
AAAGAGAAATACCTTGTTTG+CGG 0.472324 contig103end:-47773 None:intergenic
CTTCCACTCAAGTTCTCCTC+TGG 0.481704 contig103end:+47399 MsG0080047793.01.T01:CDS
CATCATCATCGTGTCTCTTG+TGG 0.482676 contig103end:-47551 None:intergenic
ATGGAATCAACGGTGGTTTG+AGG 0.484986 contig103end:+46095 MsG0080047793.01.T01:CDS
ACCAACAGAACCTCCTTGAG+AGG 0.497600 contig103end:-47436 None:intergenic
CCTTCGAATCATCTCTTGAC+TGG 0.509828 contig103end:+47349 MsG0080047793.01.T01:CDS
CAGGCAATATGTCGAGCAGC+AGG 0.517161 contig103end:+47611 MsG0080047793.01.T01:CDS
AGTTGTGACTGTGTCTGTGA+TGG 0.531261 contig103end:-47505 None:intergenic
AATGGAAAAGGAAGCAGAAG+TGG 0.531574 contig103end:+46032 MsG0080047793.01.T01:CDS
ACCTCCTTGAGAGGGATGAG+AGG 0.535265 contig103end:-47427 None:intergenic
CACAGACACAGTCACAACTA+AGG 0.536068 contig103end:+47509 MsG0080047793.01.T01:CDS
GTGACTGTGTCTGTGATGGA+TGG 0.536122 contig103end:-47501 None:intergenic
GACGACTTTGTTATTTACAA+TGG 0.541476 contig103end:+46076 MsG0080047793.01.T01:CDS
ACTTCCTCTCATCCCTCTCA+AGG 0.547022 contig103end:+47423 MsG0080047793.01.T01:CDS
GCAGGATGAAAATTATACTT+GGG 0.548238 contig103end:+47723 MsG0080047793.01.T01:intron
GTTATTTACAATGGAATCAA+CGG 0.548720 contig103end:+46085 MsG0080047793.01.T01:CDS
TGGTTATGCTTGAATTTGCC+CGG 0.551894 contig103end:+47369 MsG0080047793.01.T01:CDS
CGAGCAGCAGGAAGAAGAAG+AGG 0.559360 contig103end:+47623 MsG0080047793.01.T01:CDS
GTGCTGCGGTTGAGAAGCAA+AGG 0.559407 contig103end:+46119 MsG0080047793.01.T01:CDS
TGGAAGTGGTGCCGCAAACA+AGG 0.576899 contig103end:+47762 MsG0080047793.01.T01:CDS
GTTCCAGAGGAGAACTTGAG+TGG 0.592097 contig103end:-47402 None:intergenic
GAGTCAAGATCATAAATCAT+GGG 0.603482 contig103end:-47946 None:intergenic
GCAGCAGGAAGAAGAAGAGG+AGG 0.606552 contig103end:+47626 MsG0080047793.01.T01:CDS
TGTGTCTGTGATGGATGGAT+CGG 0.610504 contig103end:-47496 None:intergenic
TTGAGTGGAAGTTCATTACC+GGG 0.613842 contig103end:-47387 None:intergenic
GGGATGAGAGGAAGTTCCAG+AGG 0.618348 contig103end:-47415 None:intergenic
CCAGTCAAGAGATGATTCGA+AGG 0.630523 contig103end:-47349 None:intergenic
AATCATGAACTCTTTGGACA+TGG 0.631908 contig103end:-47987 None:intergenic
ATTTACAATGGAATCAACGG+TGG 0.656405 contig103end:+46088 MsG0080047793.01.T01:CDS
CCAACAGAACCTCCTTGAGA+GGG 0.661467 contig103end:-47435 None:intergenic
TGTCTCTTGTGGATTAAAAG+CGG 0.662352 contig103end:-47540 None:intergenic
TCCTCTCATCCCTCTCAAGG+AGG 0.667786 contig103end:+47426 MsG0080047793.01.T01:CDS
CGGTGGTTTGAGGAGTGCTG+CGG 0.672292 contig103end:+46105 MsG0080047793.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATGAATTTTATGATTT+TGG + contig103end:47899-47918 MsG0080047793.01.T01:intron 10.0%
!!! TTTTTGTCTAATTTTATTAA+GGG + contig103end:46349-46368 MsG0080047793.01.T01:intron 10.0%
!! AGAAATGATTAAAAATTACA+AGG + contig103end:46891-46910 MsG0080047793.01.T01:intron 15.0%
!!! ATTTTTAATCATTTCTGATT+TGG - contig103end:46887-46906 None:intergenic 15.0%
!!! CTTTTTGTCTAATTTTATTA+AGG + contig103end:46348-46367 MsG0080047793.01.T01:intron 15.0%
!! AAAATAAATCATGAACTCTT+TGG - contig103end:47996-48015 None:intergenic 20.0%
!! AAATTACAAGGAAATTTGAA+AGG + contig103end:46903-46922 MsG0080047793.01.T01:intron 20.0%
!! GTATAGTAATAGTATAGTAT+AGG + contig103end:47261-47280 MsG0080047793.01.T01:intron 20.0%
!! TGTAAAGTATATATATGAGA+TGG - contig103end:47660-47679 None:intergenic 20.0%
!!! ATGAATTTTATGATTTTGGT+AGG + contig103end:47903-47922 MsG0080047793.01.T01:intron 20.0%
!!! ATTTGGTTCTAATCATTTAT+TGG - contig103end:46870-46889 None:intergenic 20.0%
!!! TAGAAATTGAAGGAAAATTT+TGG + contig103end:46747-46766 MsG0080047793.01.T01:intron 20.0%
! AATATACCAATCTTAATGTG+TGG + contig103end:47695-47714 MsG0080047793.01.T01:intron 25.0%
! ATCATTTATTGGACAATTAG+TGG - contig103end:46859-46878 None:intergenic 25.0%
! CCTATTTATAAGAGAAAGTT+GGG + contig103end:46593-46612 MsG0080047793.01.T01:intron 25.0%
! CTCAAATGATTAGAAATTGA+AGG + contig103end:46737-46756 MsG0080047793.01.T01:intron 25.0%
! CTTTCTCTTATAAATATGAC+CGG + contig103end:46679-46698 MsG0080047793.01.T01:intron 25.0%
! GTTATTTACAATGGAATCAA+CGG + contig103end:46085-46104 MsG0080047793.01.T01:CDS 25.0%
! TATTCTCTCTTAGATATCTA+TGG - contig103end:46965-46984 None:intergenic 25.0%
! TCCTATTTATAAGAGAAAGT+TGG + contig103end:46592-46611 MsG0080047793.01.T01:intron 25.0%
!! TATTCATATGTCTGTGTTTT+TGG + contig103end:47851-47870 MsG0080047793.01.T01:intron 25.0%
!!! GTTACTATTGTTGTTGTTTT+GGG + contig103end:46222-46241 MsG0080047793.01.T01:intron 25.0%
!!! TTGGTATATTTTGAAGACAA+AGG - contig103end:47685-47704 None:intergenic 25.0%
AGAGATTGATGAAATGGAAA+AGG + contig103end:46020-46039 MsG0080047793.01.T01:CDS 30.0%
ATTAGTGACCTTACTAGAAA+AGG - contig103end:46549-46568 None:intergenic 30.0%
CAAATACCACACATTAAGAT+TGG - contig103end:47704-47723 None:intergenic 30.0%
CCCAACTTTCTCTTATAAAT+AGG - contig103end:46596-46615 None:intergenic 30.0%
GAAAATTATACTTGGGAAGA+TGG + contig103end:47730-47749 MsG0080047793.01.T01:CDS 30.0%
GAGTCAAGATCATAAATCAT+GGG - contig103end:47949-47968 None:intergenic 30.0%
GCAGGATGAAAATTATACTT+GGG + contig103end:47723-47742 MsG0080047793.01.T01:intron 30.0%
TGCAGGATGAAAATTATACT+TGG + contig103end:47722-47741 MsG0080047793.01.T01:intron 30.0%
TTAGCAAGAGATTGATGAAA+TGG + contig103end:46014-46033 MsG0080047793.01.T01:CDS 30.0%
TTAGTGACCTTACTAGAAAA+GGG - contig103end:46548-46567 None:intergenic 30.0%
TTTCTGCTGAAAATGAGAAT+CGG + contig103end:47068-47087 MsG0080047793.01.T01:intron 30.0%
! AAAGAGAAATACCTTGTTTG+CGG - contig103end:47776-47795 None:intergenic 30.0%
! TCTTCTTTCCAATTCCTTTT+CGG - contig103end:47019-47038 None:intergenic 30.0%
!! ACAATTAGTGGATTAGATCA+TGG - contig103end:46847-46866 None:intergenic 30.0%
!! GACGACTTTGTTATTTACAA+TGG + contig103end:46076-46095 MsG0080047793.01.T01:CDS 30.0%
!!! GGTTACTATTGTTGTTGTTT+TGG + contig103end:46221-46240 MsG0080047793.01.T01:intron 30.0%
AATCATGAACTCTTTGGACA+TGG - contig103end:47990-48009 None:intergenic 35.0%
ATCTTATTACTTACTCCCTC+CGG - contig103end:46701-46720 None:intergenic 35.0%
ATTTACAATGGAATCAACGG+TGG + contig103end:46088-46107 MsG0080047793.01.T01:CDS 35.0%
CACAAACAACACACAATTCA+AGG + contig103end:47472-47491 MsG0080047793.01.T01:CDS 35.0%
CATTAAATCTGGGCCATTAA+TGG - contig103end:46493-46512 None:intergenic 35.0%
CATTAATGGCCCAGATTTAA+TGG + contig103end:46491-46510 MsG0080047793.01.T01:intron 35.0%
CGAGTCAAGATCATAAATCA+TGG - contig103end:47950-47969 None:intergenic 35.0%
CTCTTATAAATAGGACCAGA+GGG - contig103end:46587-46606 None:intergenic 35.0%
CTCTTATAAATATGACCGGA+GGG + contig103end:46683-46702 MsG0080047793.01.T01:intron 35.0%
GGAATTGGAAAGAAGAGAAT+CGG + contig103end:47023-47042 MsG0080047793.01.T01:intron 35.0%
GTTTGACGATACTCTAACAA+AGG + contig103end:47144-47163 MsG0080047793.01.T01:intron 35.0%
TACATTCTTCTCAAGCAGAT+TGG + contig103end:47586-47605 MsG0080047793.01.T01:CDS 35.0%
TAGAGACAATGCAAATATCG+TGG - contig103end:47825-47844 None:intergenic 35.0%
TAGTGACCTTACTAGAAAAG+GGG - contig103end:46547-46566 None:intergenic 35.0%
TATCTTCTCTTTCTCTTTCC+AGG + contig103end:47317-47336 MsG0080047793.01.T01:intron 35.0%
TCTCTTATAAATAGGACCAG+AGG - contig103end:46588-46607 None:intergenic 35.0%
TCTCTTATAAATATGACCGG+AGG + contig103end:46682-46701 MsG0080047793.01.T01:intron 35.0%
TCTTAATGTGTGGTATTTGC+AGG + contig103end:47705-47724 MsG0080047793.01.T01:intron 35.0%
! TAGCACTTTGGTGCAATTAA+TGG + contig103end:46422-46441 MsG0080047793.01.T01:intron 35.0%
! TCAAATTGAGCTTGCTCTTT+CGG + contig103end:47230-47249 MsG0080047793.01.T01:intron 35.0%
! TGTCTCTTGTGGATTAAAAG+CGG - contig103end:47543-47562 None:intergenic 35.0%
! TTCCAATTCCTTTTCGGTTT+CGG - contig103end:47013-47032 None:intergenic 35.0%
!! ATCTATCTTGGTGCCATTAA+TGG + contig103end:46477-46496 MsG0080047793.01.T01:intron 35.0%
!!! ATCTTGTTTTCCTTCACACA+TGG + contig103end:46199-46218 MsG0080047793.01.T01:intron 35.0%
!!! TCTTGTTTTCCTTCACACAT+GGG + contig103end:46200-46219 MsG0080047793.01.T01:intron 35.0%
AAAGAAGAGAATCGGCGAAA+AGG + contig103end:47031-47050 MsG0080047793.01.T01:intron 40.0%
AATGGAAAAGGAAGCAGAAG+TGG + contig103end:46032-46051 MsG0080047793.01.T01:CDS 40.0%
ACCAAGATAGATGTGTTGTG+TGG - contig103end:46469-46488 None:intergenic 40.0%
AGAAACAGTCGCTATTGAGA+TGG + contig103end:46985-47004 MsG0080047793.01.T01:intron 40.0%
CAATAGTAACCCATGTGTGA+AGG - contig103end:46212-46231 None:intergenic 40.0%
CTTGAGTGGAAGTTCATTAC+CGG - contig103end:47391-47410 None:intergenic 40.0%
TATGAGAAACTCTCTTGCGA+AGG + contig103end:47195-47214 MsG0080047793.01.T01:intron 40.0%
TGGAAAGATCACTGAGTACA+AGG + contig103end:46767-46786 MsG0080047793.01.T01:intron 40.0%
TGGTTATGCTTGAATTTGCC+CGG + contig103end:47369-47388 MsG0080047793.01.T01:CDS 40.0%
TTGAGTGGAAGTTCATTACC+GGG - contig103end:47390-47409 None:intergenic 40.0%
TTGGGTTCATTGAGATGTGT+TGG + contig103end:46240-46259 MsG0080047793.01.T01:intron 40.0%
! AAAGTGCTAAGAAAAGGGCA+TGG - contig103end:46411-46430 None:intergenic 40.0%
! AGAGAAACACAGTCTGAGAT+TGG + contig103end:46160-46179 MsG0080047793.01.T01:CDS 40.0%
! AGAGGAAAGAAGGGGTATAA+TGG + contig103end:46317-46336 MsG0080047793.01.T01:intron 40.0%
! ATGCCCTTTTCTTAGCACTT+TGG + contig103end:46410-46429 MsG0080047793.01.T01:intron 40.0%
! CTGAAAATGAGAATCGGCTT+CGG + contig103end:47074-47093 MsG0080047793.01.T01:intron 40.0%
! GCACCAAAGTGCTAAGAAAA+GGG - contig103end:46416-46435 None:intergenic 40.0%
! TAATGGCACAGTGCCATTAA+TGG + contig103end:46508-46527 MsG0080047793.01.T01:intron 40.0%
! TGCACCAAAGTGCTAAGAAA+AGG - contig103end:46417-46436 None:intergenic 40.0%
! TGGGAAGATGGCAATTTTGA+TGG + contig103end:47742-47761 MsG0080047793.01.T01:CDS 40.0%
! TGTGGATTAAAAGCGGAGAT+TGG - contig103end:47536-47555 None:intergenic 40.0%
!! GATGGCAATTTTGATGGAAG+TGG + contig103end:47748-47767 MsG0080047793.01.T01:CDS 40.0%
!! TTGCACTTTGGTGCCATTAA+TGG - contig103end:46524-46543 None:intergenic 40.0%
AGGAAGGAAGAGGAAAGAAG+GGG + contig103end:46309-46328 MsG0080047793.01.T01:intron 45.0%
AGTTGTGACTGTGTCTGTGA+TGG - contig103end:47508-47527 None:intergenic 45.0%
ATGGAATCAACGGTGGTTTG+AGG + contig103end:46095-46114 MsG0080047793.01.T01:CDS 45.0%
ATTCGAAGGTAGCACATTCC+TGG - contig103end:47338-47357 None:intergenic 45.0%
CACAGACACAGTCACAACTA+AGG + contig103end:47509-47528 MsG0080047793.01.T01:CDS 45.0%
CATCATCATCGTGTCTCTTG+TGG - contig103end:47554-47573 None:intergenic 45.0%
CCAGTCAAGAGATGATTCGA+AGG - contig103end:47352-47371 None:intergenic 45.0%
CCTTCGAATCATCTCTTGAC+TGG + contig103end:47349-47368 MsG0080047793.01.T01:CDS 45.0%
CTAGAAAAGGGGTTGCACTT+TGG - contig103end:46536-46555 None:intergenic 45.0%
CTTCTCAAGCAGATTGGATC+AGG + contig103end:47592-47611 MsG0080047793.01.T01:CDS 45.0%
GAGGAAGGAAGAGGAAAGAA+GGG + contig103end:46308-46327 MsG0080047793.01.T01:intron 45.0%
GCCACACAACACATCTATCT+TGG + contig103end:46465-46484 MsG0080047793.01.T01:intron 45.0%
GGTTCATTGAGATGTGTTGG+TGG + contig103end:46243-46262 MsG0080047793.01.T01:intron 45.0%
GTTGTGTGGCCCAGATTTAA+TGG - contig103end:46455-46474 None:intergenic 45.0%
TCAGCAGAAATTTGCAGCTG+AGG - contig103end:47058-47077 None:intergenic 45.0%
! AAAATGAGAATCGGCTTCGG+CGG + contig103end:47077-47096 MsG0080047793.01.T01:intron 45.0%
! GGAAGAGAACAATGGTGTTG+CGG + contig103end:46273-46292 MsG0080047793.01.T01:intron 45.0%
! GGCACTGTGCCATTAAATCT+GGG - contig103end:46503-46522 None:intergenic 45.0%
! TCATTGAGATGTGTTGGTGG+TGG + contig103end:46246-46265 MsG0080047793.01.T01:intron 45.0%
! TGGCACTGTGCCATTAAATC+TGG - contig103end:46504-46523 None:intergenic 45.0%
!! GAAGAGAACAATGGTGTTGC+GGG + contig103end:46274-46293 MsG0080047793.01.T01:intron 45.0%
!! GTGCAACCCCTTTTCTAGTA+AGG + contig103end:46538-46557 MsG0080047793.01.T01:intron 45.0%
!! GTGGTGATGGAAGAGAACAA+TGG + contig103end:46265-46284 MsG0080047793.01.T01:intron 45.0%
!! TGTGTCTGTGATGGATGGAT+CGG - contig103end:47499-47518 None:intergenic 45.0%
ACCAACAGAACCTCCTTGAG+AGG - contig103end:47439-47458 None:intergenic 50.0%
ACTTCCTCTCATCCCTCTCA+AGG + contig103end:47423-47442 MsG0080047793.01.T01:CDS 50.0%
CATGTGTCACATACTCCCTC+TGG + contig103end:46569-46588 MsG0080047793.01.T01:intron 50.0%
CCAACAGAACCTCCTTGAGA+GGG - contig103end:47438-47457 None:intergenic 50.0%
CGCCGAAACCGAAAAGGAAT+TGG + contig103end:47008-47027 MsG0080047793.01.T01:intron 50.0%
CTTCCACTCAAGTTCTCCTC+TGG + contig103end:47399-47418 MsG0080047793.01.T01:CDS 50.0%
GGAGGAAGGAAGAGGAAAGA+AGG + contig103end:46307-46326 MsG0080047793.01.T01:intron 50.0%
GTGGCCCAGATTTAATGGCA+CGG - contig103end:46450-46469 None:intergenic 50.0%
GTTCCAGAGGAGAACTTGAG+TGG - contig103end:47405-47424 None:intergenic 50.0%
! GGCACCGTGCCATTAAATCT+GGG + contig103end:46443-46462 MsG0080047793.01.T01:intron 50.0%
! GTGACTGTGTCTGTGATGGA+TGG - contig103end:47504-47523 None:intergenic 50.0%
! TGGCACCGTGCCATTAAATC+TGG + contig103end:46442-46461 MsG0080047793.01.T01:intron 50.0%
!! AGATGTGTTGGTGGTGGTGA+TGG + contig103end:46252-46271 MsG0080047793.01.T01:intron 50.0%
ACCTCCTTGAGAGGGATGAG+AGG - contig103end:47430-47449 None:intergenic 55.0%
CAGGCAATATGTCGAGCAGC+AGG + contig103end:47611-47630 MsG0080047793.01.T01:CDS 55.0%
CCCTCTCAAGGAGGTTCTGT+TGG + contig103end:47435-47454 MsG0080047793.01.T01:CDS 55.0%
CGAGCAGCAGGAAGAAGAAG+AGG + contig103end:47623-47642 MsG0080047793.01.T01:CDS 55.0%
GCAGCAGGAAGAAGAAGAGG+AGG + contig103end:47626-47645 MsG0080047793.01.T01:CDS 55.0%
GCTTGCTCTTTCGGCTCTCA+AGG + contig103end:47239-47258 MsG0080047793.01.T01:intron 55.0%
GGGATGAGAGGAAGTTCCAG+AGG - contig103end:47418-47437 None:intergenic 55.0%
GTGCTGCGGTTGAGAAGCAA+AGG + contig103end:46119-46138 MsG0080047793.01.T01:CDS 55.0%
TCCTCTCATCCCTCTCAAGG+AGG + contig103end:47426-47445 MsG0080047793.01.T01:CDS 55.0%
! AGATGGCGCCGAAACCGAAA+AGG + contig103end:47002-47021 MsG0080047793.01.T01:intron 55.0%
!! AACAATGGTGTTGCGGGTGG+TGG + contig103end:46280-46299 MsG0080047793.01.T01:intron 55.0%
!! GAGAACAATGGTGTTGCGGG+TGG + contig103end:46277-46296 MsG0080047793.01.T01:intron 55.0%
!! TGGAAGTGGTGCCGCAAACA+AGG + contig103end:47762-47781 MsG0080047793.01.T01:CDS 55.0%
AAACTCCGTCGCAGCAGGGA+TGG - contig103end:47128-47147 None:intergenic 60.0%
CGTCAAACTCCGTCGCAGCA+GGG - contig103end:47132-47151 None:intergenic 60.0%
TCGTCAAACTCCGTCGCAGC+AGG - contig103end:47133-47152 None:intergenic 60.0%
!! AATGGTGTTGCGGGTGGTGG+TGG + contig103end:46283-46302 MsG0080047793.01.T01:intron 60.0%
!! CGGTGGTTTGAGGAGTGCTG+CGG + contig103end:46105-46124 MsG0080047793.01.T01:CDS 60.0%
!! GTGGTGGTGGAGGAAGGAAG+AGG + contig103end:46299-46318 MsG0080047793.01.T01:intron 60.0%
GCTGCTGCTGAACTCTGGGC+GGG + contig103end:47099-47118 MsG0080047793.01.T01:intron 65.0%
GGCGGCTGCTGCTGAACTCT+GGG + contig103end:47095-47114 MsG0080047793.01.T01:intron 65.0%
GGCTGCTGCTGAACTCTGGG+CGG + contig103end:47098-47117 MsG0080047793.01.T01:intron 65.0%
CGGCGGCTGCTGCTGAACTC+TGG + contig103end:47094-47113 MsG0080047793.01.T01:intron 70.0%
CTCCGTCGCAGCAGGGATGG+TGG - contig103end:47125-47144 None:intergenic 70.0%
GGCCACCATCCCTGCTGCGA+CGG + contig103end:47120-47139 MsG0080047793.01.T01:intron 70.0%
!! CGGGTGGTGGTGGTGGAGGA+AGG + contig103end:46293-46312 MsG0080047793.01.T01:intron 70.0%
!! GGTGTTGCGGGTGGTGGTGG+TGG + contig103end:46286-46305 MsG0080047793.01.T01:intron 70.0%
!! GTTGCGGGTGGTGGTGGTGG+AGG + contig103end:46289-46308 MsG0080047793.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
contig103end gene 45995 48029 45995 ID=MsG0080047793.01;Name=MsG0080047793.01
contig103end mRNA 45995 48029 45995 ID=MsG0080047793.01.T01;Parent=MsG0080047793.01;Name=MsG0080047793.01.T01;_AED=0.48;_eAED=0.60;_QI=0|0.33|0.5|0.75|1|1|4|0|221
contig103end exon 45995 46189 45995 ID=MsG0080047793.01.T01:exon:2949;Parent=MsG0080047793.01.T01
contig103end exon 47339 47647 47339 ID=MsG0080047793.01.T01:exon:2948;Parent=MsG0080047793.01.T01
contig103end exon 47727 47783 47727 ID=MsG0080047793.01.T01:exon:2947;Parent=MsG0080047793.01.T01
contig103end exon 47925 48029 47925 ID=MsG0080047793.01.T01:exon:2946;Parent=MsG0080047793.01.T01
contig103end CDS 45995 46189 45995 ID=MsG0080047793.01.T01:cds;Parent=MsG0080047793.01.T01
contig103end CDS 47339 47647 47339 ID=MsG0080047793.01.T01:cds;Parent=MsG0080047793.01.T01
contig103end CDS 47727 47783 47727 ID=MsG0080047793.01.T01:cds;Parent=MsG0080047793.01.T01
contig103end CDS 47925 48029 47925 ID=MsG0080047793.01.T01:cds;Parent=MsG0080047793.01.T01
Gene Sequence

>MsG0080047793.01.T01

ATGGATGATGCTTTAGTGTTTAGCAAGAGATTGATGAAATGGAAAAGGAAGCAGAAGTGGAAGAGAAATCGTGTTGATTGTGACGACTTTGTTATTTACAATGGAATCAACGGTGGTTTGAGGAGTGCTGCGGTTGAGAAGCAAAGGAGCAGAAATATAGATTTAAGAGAAACACAGTCTGAGATTGGAGAGCATGAATGTGCTACCTTCGAATCATCTCTTGACTGGTTATGCTTGAATTTGCCCGGTAATGAACTTCCACTCAAGTTCTCCTCTGGAACTTCCTCTCATCCCTCTCAAGGAGGTTCTGTTGGTGTTATTTCAATCACACAAACAACACACAATTCAAGGACCGATCCATCCATCACAGACACAGTCACAACTAAGGACCAATCTCCGCTTTTAATCCACAAGAGACACGATGATGATGATGATGATACTTTACATTCTTCTCAAGCAGATTGGATCAGGCAATATGTCGAGCAGCAGGAAGAAGAAGAGGAGGATGAAAATTATACTTGGGAAGATGGCAATTTTGATGGAAGTGGTGCCGCAAACAAGGATCTTATAATCTGTTACAGTCCCATGATTTATGATCTTGACTCGATTCTTGATTTTGACTACCATGTCCAAAGAGTTCATGATTTATTTTTCTCTCTTATTTAG
Protein sequence

>MsG0080047793.01.T01

MDDALVFSKRLMKWKRKQKWKRNRVDCDDFVIYNGINGGLRSAAVEKQRSRNIDLRETQSEIGEHECATFESSLDWLCLNLPGNELPLKFSSGTSSHPSQGGSVGVISITQTTHNSRTDPSITDTVTTKDQSPLLIHKRHDDDDDDTLHSSQADWIRQYVEQQEEEEEDENYTWEDGNFDGSGAANKDLIICYSPMIYDLDSILDFDYHVQRVHDLFFSLI*