Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048001.01.T01 | KYP57264.1 | 67.263 | 391 | 66 | 6 | 14 | 366 | 16 | 382 | 4.96E-159 | 472 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048001.01.T01 | Q39183 | 63.033 | 211 | 78 | 0 | 156 | 366 | 85 | 295 | 5.21E-82 | 264 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048001.01.T01 | A0A151SR04 | 67.263 | 391 | 66 | 6 | 14 | 366 | 16 | 382 | 2.37e-159 | 472 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048001.01 | MsG0180000114.01 | 0.809407 | 1.920995e-50 | 1.126993e-47 |
| MsG0080048001.01 | MsG0180000784.01 | 0.805927 | 1.053882e-49 | 5.646125e-47 |
| MsG0080048001.01 | MsG0180000785.01 | 0.827495 | 1.515718e-54 | 1.465725e-51 |
| MsG0080048001.01 | MsG0180001100.01 | 0.801368 | 9.307301e-49 | 4.437042e-46 |
| MsG0080048001.01 | MsG0180003741.01 | 0.809774 | 1.602765e-50 | 9.495012e-48 |
| MsG0080048001.01 | MsG0380015847.01 | -0.803670 | 3.121086e-49 | 1.577716e-46 |
| MsG0080048001.01 | MsG0380016391.01 | 0.814755 | 1.310575e-51 | 8.869235e-49 |
| MsG0080048001.01 | MsG0380016864.01 | 0.808104 | 3.648567e-50 | 2.067887e-47 |
| MsG0080048001.01 | MsG0480018200.01 | 0.820535 | 6.514712e-53 | 5.168693e-50 |
| MsG0080048001.01 | MsG0480018848.01 | 0.804420 | 2.179088e-49 | 1.122976e-46 |
| MsG0080048001.01 | MsG0480023988.01 | 0.805598 | 1.235742e-49 | 6.564478e-47 |
| MsG0080048001.01 | MsG0580024443.01 | 0.811942 | 5.438387e-51 | 3.411626e-48 |
| MsG0080048001.01 | MsG0580024775.01 | 0.803445 | 3.473741e-49 | 1.745952e-46 |
| MsG0080048001.01 | MsG0580029310.01 | 0.802900 | 4.505540e-49 | 2.233187e-46 |
| MsG0080048001.01 | MsG0680031344.01 | 0.808413 | 3.135307e-50 | 1.791533e-47 |
| MsG0080048001.01 | MsG0680031621.01 | 0.810222 | 1.283022e-50 | 7.689659e-48 |
| MsG0080048001.01 | MsG0680031708.01 | 0.815140 | 1.076701e-51 | 7.362464e-49 |
| MsG0080048001.01 | MsG0780037341.01 | 0.810575 | 1.076547e-50 | 6.513051e-48 |
| MsG0080048001.01 | MsG0780039941.01 | 0.853131 | 2.926559e-61 | 6.257940e-58 |
| MsG0080048001.01 | MsG0880047045.01 | 0.819744 | 9.887441e-53 | 7.674129e-50 |
| MsG0080048001.01 | MsG0880047046.01 | 0.818144 | 2.285339e-52 | 1.696810e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048001.01.T01 | MTR_7g081665 | 98.222 | 225 | 4 | 0 | 142 | 366 | 246 | 470 | 1.82e-157 | 461 |
| MsG0080048001.01.T01 | MTR_7g081665 | 64.744 | 156 | 30 | 3 | 14 | 144 | 16 | 171 | 1.61e-49 | 177 |
| MsG0080048001.01.T01 | MTR_8g006870 | 86.344 | 227 | 29 | 1 | 142 | 366 | 250 | 476 | 2.62e-130 | 391 |
| MsG0080048001.01.T01 | MTR_8g006870 | 46.763 | 139 | 67 | 4 | 5 | 136 | 29 | 167 | 2.87e-24 | 104 |
| MsG0080048001.01.T01 | MTR_2g027240 | 65.174 | 201 | 65 | 1 | 166 | 366 | 115 | 310 | 2.64e-83 | 265 |
| MsG0080048001.01.T01 | MTR_6g004720 | 67.273 | 165 | 54 | 0 | 202 | 366 | 193 | 357 | 8.62e-74 | 241 |
| MsG0080048001.01.T01 | MTR_7g033640 | 65.104 | 192 | 61 | 3 | 178 | 366 | 150 | 338 | 5.86e-73 | 238 |
| MsG0080048001.01.T01 | MTR_7g104180 | 47.926 | 217 | 107 | 2 | 155 | 366 | 383 | 598 | 4.40e-57 | 199 |
| MsG0080048001.01.T01 | MTR_2g062850 | 56.805 | 169 | 65 | 3 | 198 | 366 | 115 | 275 | 3.01e-55 | 190 |
| MsG0080048001.01.T01 | MTR_3g010260 | 59.859 | 142 | 57 | 0 | 225 | 366 | 380 | 521 | 7.63e-55 | 192 |
| MsG0080048001.01.T01 | MTR_1g060790 | 53.714 | 175 | 78 | 2 | 195 | 366 | 402 | 576 | 1.19e-53 | 190 |
| MsG0080048001.01.T01 | MTR_8g446990 | 59.420 | 138 | 55 | 1 | 230 | 366 | 101 | 238 | 1.93e-51 | 179 |
| MsG0080048001.01.T01 | MTR_4g113790 | 55.556 | 135 | 55 | 1 | 231 | 360 | 62 | 196 | 1.59e-47 | 168 |
| MsG0080048001.01.T01 | MTR_8g070530 | 43.750 | 176 | 89 | 2 | 201 | 366 | 528 | 703 | 1.16e-39 | 150 |
| MsG0080048001.01.T01 | MTR_2g018990 | 40.761 | 184 | 94 | 2 | 193 | 366 | 15 | 193 | 6.18e-34 | 130 |
| MsG0080048001.01.T01 | MTR_2g095980 | 37.696 | 191 | 112 | 2 | 183 | 366 | 287 | 477 | 1.22e-33 | 132 |
| MsG0080048001.01.T01 | MTR_2g095980 | 37.696 | 191 | 112 | 2 | 183 | 366 | 542 | 732 | 1.27e-33 | 132 |
| MsG0080048001.01.T01 | MTR_2g095980 | 37.696 | 191 | 112 | 2 | 183 | 366 | 542 | 732 | 1.29e-33 | 132 |
| MsG0080048001.01.T01 | MTR_8g089420 | 45.070 | 142 | 64 | 2 | 235 | 366 | 52 | 189 | 5.67e-33 | 128 |
| MsG0080048001.01.T01 | MTR_2g069990 | 44.643 | 168 | 81 | 5 | 207 | 366 | 37 | 200 | 8.75e-33 | 128 |
| MsG0080048001.01.T01 | MTR_2g085065 | 50.000 | 132 | 61 | 2 | 240 | 366 | 67 | 198 | 2.98e-32 | 126 |
| MsG0080048001.01.T01 | MTR_4g061610 | 47.967 | 123 | 58 | 1 | 235 | 357 | 619 | 735 | 1.17e-30 | 124 |
| MsG0080048001.01.T01 | MTR_8g011780 | 35.484 | 124 | 70 | 2 | 253 | 366 | 11 | 134 | 3.41e-15 | 77.0 |
| MsG0080048001.01.T01 | MTR_4g065080 | 36.752 | 117 | 67 | 2 | 257 | 366 | 10 | 126 | 1.00e-14 | 75.5 |
| MsG0080048001.01.T01 | MTR_2g098240 | 38.679 | 106 | 62 | 2 | 256 | 360 | 11 | 114 | 3.06e-14 | 73.6 |
| MsG0080048001.01.T01 | MTR_7g053200 | 35.043 | 117 | 69 | 2 | 257 | 366 | 8 | 124 | 3.55e-14 | 73.9 |
| MsG0080048001.01.T01 | MTR_1g075880 | 31.429 | 105 | 72 | 0 | 250 | 354 | 105 | 209 | 1.46e-11 | 66.2 |
| MsG0080048001.01.T01 | MTR_1g069735 | 31.429 | 105 | 72 | 0 | 250 | 354 | 108 | 212 | 2.03e-11 | 65.5 |
| MsG0080048001.01.T01 | MTR_1g069735 | 31.429 | 105 | 72 | 0 | 250 | 354 | 108 | 212 | 2.07e-11 | 65.5 |
| MsG0080048001.01.T01 | MTR_1g069735 | 31.429 | 105 | 72 | 0 | 250 | 354 | 108 | 212 | 2.25e-11 | 65.5 |
| MsG0080048001.01.T01 | MTR_7g097150 | 30.476 | 105 | 73 | 0 | 250 | 354 | 108 | 212 | 5.91e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048001.01.T01 | AT2G44830 | 74.779 | 226 | 54 | 2 | 142 | 366 | 244 | 467 | 7.83e-110 | 338 |
| MsG0080048001.01.T01 | AT2G44830 | 74.779 | 226 | 54 | 2 | 142 | 366 | 244 | 467 | 7.83e-110 | 338 |
| MsG0080048001.01.T01 | AT2G44830 | 74.779 | 226 | 54 | 2 | 142 | 366 | 244 | 467 | 7.83e-110 | 338 |
| MsG0080048001.01.T01 | AT5G47750 | 63.033 | 211 | 78 | 0 | 156 | 366 | 85 | 295 | 5.31e-83 | 264 |
| MsG0080048001.01.T01 | AT5G55910 | 64.246 | 179 | 63 | 1 | 189 | 366 | 35 | 213 | 3.02e-76 | 244 |
| MsG0080048001.01.T01 | AT5G55910 | 64.246 | 179 | 63 | 1 | 189 | 366 | 35 | 213 | 3.02e-76 | 244 |
| MsG0080048001.01.T01 | AT4G26610 | 57.407 | 216 | 82 | 5 | 151 | 366 | 22 | 227 | 8.22e-76 | 243 |
| MsG0080048001.01.T01 | AT5G40030 | 65.986 | 147 | 48 | 2 | 221 | 366 | 73 | 218 | 1.57e-65 | 216 |
| MsG0080048001.01.T01 | AT1G79250 | 64.234 | 137 | 49 | 0 | 230 | 366 | 114 | 250 | 8.00e-56 | 191 |
| MsG0080048001.01.T01 | AT1G79250 | 64.234 | 137 | 49 | 0 | 230 | 366 | 114 | 250 | 8.00e-56 | 191 |
| MsG0080048001.01.T01 | AT1G79250 | 64.234 | 137 | 49 | 0 | 230 | 366 | 114 | 250 | 8.00e-56 | 191 |
| MsG0080048001.01.T01 | AT1G79250 | 64.234 | 137 | 49 | 0 | 230 | 366 | 114 | 250 | 8.00e-56 | 191 |
| MsG0080048001.01.T01 | AT3G12690 | 60.563 | 142 | 56 | 0 | 225 | 366 | 148 | 289 | 2.56e-55 | 191 |
| MsG0080048001.01.T01 | AT3G12690 | 60.563 | 142 | 56 | 0 | 225 | 366 | 148 | 289 | 2.56e-55 | 191 |
| MsG0080048001.01.T01 | AT3G12690 | 60.563 | 142 | 56 | 0 | 225 | 366 | 148 | 289 | 2.56e-55 | 191 |
| MsG0080048001.01.T01 | AT3G52890 | 56.522 | 161 | 69 | 1 | 206 | 366 | 483 | 642 | 9.81e-55 | 193 |
| MsG0080048001.01.T01 | AT3G52890 | 56.522 | 161 | 69 | 1 | 206 | 366 | 483 | 642 | 9.81e-55 | 193 |
| MsG0080048001.01.T01 | AT3G52890 | 56.522 | 161 | 69 | 1 | 206 | 366 | 483 | 642 | 9.81e-55 | 193 |
| MsG0080048001.01.T01 | AT3G52890 | 56.522 | 161 | 69 | 1 | 206 | 366 | 483 | 642 | 9.81e-55 | 193 |
| MsG0080048001.01.T01 | AT1G16440 | 64.179 | 134 | 46 | 1 | 235 | 366 | 86 | 219 | 1.02e-53 | 185 |
| MsG0080048001.01.T01 | AT5G03640 | 50.276 | 181 | 82 | 3 | 188 | 366 | 471 | 645 | 1.36e-53 | 190 |
| MsG0080048001.01.T01 | AT5G03640 | 50.276 | 181 | 82 | 3 | 188 | 366 | 471 | 645 | 1.36e-53 | 190 |
| MsG0080048001.01.T01 | AT3G27580 | 56.742 | 178 | 74 | 3 | 192 | 366 | 109 | 286 | 1.69e-52 | 183 |
| MsG0080048001.01.T01 | AT3G27580 | 56.742 | 178 | 74 | 3 | 192 | 366 | 109 | 286 | 1.69e-52 | 183 |
| MsG0080048001.01.T01 | AT2G36350 | 59.701 | 134 | 54 | 0 | 233 | 366 | 530 | 663 | 1.96e-50 | 181 |
| MsG0080048001.01.T01 | AT2G26700 | 49.342 | 152 | 74 | 2 | 218 | 366 | 42 | 193 | 1.04e-40 | 150 |
| MsG0080048001.01.T01 | AT2G34650 | 47.826 | 161 | 73 | 3 | 215 | 366 | 26 | 184 | 5.34e-39 | 144 |
| MsG0080048001.01.T01 | AT3G45780 | 45.223 | 157 | 85 | 1 | 211 | 366 | 611 | 767 | 1.03e-35 | 139 |
| MsG0080048001.01.T01 | AT3G45780 | 45.223 | 157 | 85 | 1 | 211 | 366 | 611 | 767 | 1.03e-35 | 139 |
| MsG0080048001.01.T01 | AT5G58140 | 48.092 | 131 | 68 | 0 | 236 | 366 | 551 | 681 | 5.17e-34 | 133 |
| MsG0080048001.01.T01 | AT5G58140 | 48.092 | 131 | 68 | 0 | 236 | 366 | 551 | 681 | 1.07e-33 | 132 |
| MsG0080048001.01.T01 | AT5G58140 | 48.092 | 131 | 68 | 0 | 236 | 366 | 551 | 681 | 1.07e-33 | 132 |
| MsG0080048001.01.T01 | AT5G58140 | 48.092 | 131 | 68 | 0 | 236 | 366 | 551 | 681 | 1.07e-33 | 132 |
| MsG0080048001.01.T01 | AT5G58140 | 48.092 | 131 | 68 | 0 | 236 | 366 | 551 | 681 | 1.07e-33 | 132 |
| MsG0080048001.01.T01 | AT5G58140 | 48.092 | 131 | 68 | 0 | 236 | 366 | 551 | 681 | 1.07e-33 | 132 |
| MsG0080048001.01.T01 | AT5G58140 | 48.092 | 131 | 68 | 0 | 236 | 366 | 551 | 681 | 1.37e-33 | 132 |
| MsG0080048001.01.T01 | AT3G14370 | 45.902 | 122 | 64 | 1 | 237 | 356 | 61 | 182 | 2.73e-32 | 126 |
| MsG0080048001.01.T01 | AT1G53700 | 46.341 | 123 | 61 | 3 | 237 | 355 | 66 | 187 | 4.55e-28 | 114 |
| MsG0080048001.01.T01 | AT3G44610 | 50.435 | 115 | 45 | 2 | 262 | 366 | 71 | 183 | 1.45e-27 | 113 |
| MsG0080048001.01.T01 | AT1G30640 | 31.818 | 110 | 75 | 0 | 245 | 354 | 103 | 212 | 5.47e-12 | 67.4 |
| MsG0080048001.01.T01 | AT1G30640 | 31.818 | 110 | 75 | 0 | 245 | 354 | 103 | 212 | 5.47e-12 | 67.4 |
| MsG0080048001.01.T01 | AT4G13000 | 33.051 | 118 | 69 | 3 | 257 | 366 | 15 | 130 | 6.03e-12 | 66.6 |
| MsG0080048001.01.T01 | AT1G51170 | 39.474 | 114 | 57 | 3 | 256 | 360 | 16 | 126 | 8.45e-12 | 66.6 |
| MsG0080048001.01.T01 | AT1G30640 | 31.818 | 110 | 75 | 0 | 245 | 354 | 10 | 119 | 1.05e-11 | 66.2 |
| MsG0080048001.01.T01 | AT2G20470 | 34.286 | 105 | 69 | 0 | 250 | 354 | 112 | 216 | 1.65e-11 | 65.9 |
| MsG0080048001.01.T01 | AT2G20470 | 34.286 | 105 | 69 | 0 | 250 | 354 | 112 | 216 | 1.65e-11 | 65.9 |
| MsG0080048001.01.T01 | AT2G20470 | 34.286 | 105 | 69 | 0 | 250 | 354 | 112 | 216 | 1.75e-11 | 65.9 |
| MsG0080048001.01.T01 | AT5G09890 | 31.429 | 105 | 72 | 0 | 250 | 354 | 90 | 194 | 6.75e-11 | 63.9 |
| MsG0080048001.01.T01 | AT5G09890 | 31.429 | 105 | 72 | 0 | 250 | 354 | 90 | 194 | 6.81e-11 | 63.9 |
Find 92 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTCTAATCAGCTTCTTTC+TGG | 0.082275 | contig165end:-25036 | MsG0080048001.01.T01:intergenic |
| CCGAGCACGGGATGGAAATT+TGG | 0.159585 | contig165end:+24887 | MsG0080048001.01.T01:CDS |
| ATTTCCTTTATGTGGTTTAC+TGG | 0.197924 | contig165end:-24835 | MsG0080048001.01.T01:intergenic |
| GCGGAGATCTGCATGCTTTA+AGG | 0.224664 | contig165end:+25168 | MsG0080048001.01.T01:CDS |
| TACTTCCTCGCCTGCCATTT+CGG | 0.293692 | contig165end:+23864 | MsG0080048001.01.T01:CDS |
| TGTCAAATGCAAGAATTCTT+TGG | 0.303545 | contig165end:+24049 | MsG0080048001.01.T01:CDS |
| AAGAGCAGCAGTGATTCTTT+TGG | 0.319984 | contig165end:+24200 | MsG0080048001.01.T01:CDS |
| CTCTTCAACATCTCGATATC+AGG | 0.320467 | contig165end:-24182 | MsG0080048001.01.T01:intergenic |
| CTGAGGAGAACGATTGCGTT+TGG | 0.320798 | contig165end:+24536 | MsG0080048001.01.T01:intron |
| CAGCTTCTCTTACAGCTTTG+TGG | 0.328095 | contig165end:-23904 | MsG0080048001.01.T01:intergenic |
| CGACTTGGTTGTGGTGATAT+TGG | 0.329678 | contig165end:+24936 | MsG0080048001.01.T01:CDS |
| AGATCAGTATCGATAGGTTC+TGG | 0.342416 | contig165end:-24263 | MsG0080048001.01.T01:intergenic |
| ATATGTACTCGCACAACTAT+TGG | 0.343409 | contig165end:-24640 | MsG0080048001.01.T01:intergenic |
| TCAGCTTCTTTCTGGCAGAT+AGG | 0.356525 | contig165end:-25028 | MsG0080048001.01.T01:intergenic |
| GACCGACAGATTCTCATGTT+TGG | 0.379811 | contig165end:+25127 | MsG0080048001.01.T01:CDS |
| CTCGCCTGCCATTTCGGTTG+AGG | 0.386156 | contig165end:+23870 | MsG0080048001.01.T01:CDS |
| CTAGGGTCATTTCCTTTATG+TGG | 0.390807 | contig165end:-24843 | MsG0080048001.01.T01:intergenic |
| AAGGGAGATATTGCAGTTGC+TGG | 0.395689 | contig165end:+25067 | MsG0080048001.01.T01:CDS |
| CGAGCACGGGATGGAAATTT+GGG | 0.397667 | contig165end:+24888 | MsG0080048001.01.T01:CDS |
| CAGCTTCTTTCTGGCAGATA+GGG | 0.404765 | contig165end:-25027 | MsG0080048001.01.T01:intergenic |
| GAAGCTGGTCAGAGACTAAC+GGG | 0.407157 | contig165end:+23920 | MsG0080048001.01.T01:CDS |
| GGCAAGAGTTCTTTGTGGTC+TGG | 0.408624 | contig165end:-24161 | MsG0080048001.01.T01:intergenic |
| ACTGATCCAAGTTCATTTGC+TGG | 0.409176 | contig165end:+24227 | MsG0080048001.01.T01:CDS |
| GCCTCAGCGATGACAGCAAC+TGG | 0.417899 | contig165end:+24793 | MsG0080048001.01.T01:CDS |
| TGAGGAGAACGATTGCGTTT+GGG | 0.418380 | contig165end:+24537 | MsG0080048001.01.T01:intron |
| CAGATTCTCATGTTTGGTAA+TGG | 0.420632 | contig165end:+25133 | MsG0080048001.01.T01:CDS |
| TTCTTTGTGGTCTGGAAAAG+AGG | 0.423392 | contig165end:-24153 | MsG0080048001.01.T01:intergenic |
| AGTATTAAAGGAAATGTTAG+AGG | 0.433403 | contig165end:+24717 | MsG0080048001.01.T01:CDS |
| ATCAGATACCTCAACCGAAA+TGG | 0.459697 | contig165end:-23878 | MsG0080048001.01.T01:intergenic |
| GTATACAGCATAGGTAGAAA+TGG | 0.462769 | contig165end:-25095 | MsG0080048001.01.T01:intergenic |
| AGAACGGTTTATGTACCAAT+AGG | 0.471741 | contig165end:+24290 | MsG0080048001.01.T01:CDS |
| TTTGGTAATGGAGTACTGTC+CGG | 0.480641 | contig165end:+25145 | MsG0080048001.01.T01:CDS |
| CTAGCACCAGCAAATGAACT+TGG | 0.481646 | contig165end:-24233 | MsG0080048001.01.T01:intergenic |
| CCAAATTTCCATCCCGTGCT+CGG | 0.485772 | contig165end:-24887 | MsG0080048001.01.T01:intergenic |
| GCTTTAAGGCAACGGCAACC+AGG | 0.490897 | contig165end:+25182 | MsG0080048001.01.T01:CDS |
| AGTGCCAGTAAACCACATAA+AGG | 0.492741 | contig165end:+24831 | MsG0080048001.01.T01:CDS |
| GATCAGTATCGATAGGTTCT+GGG | 0.504925 | contig165end:-24262 | MsG0080048001.01.T01:intergenic |
| CACAAAGCTGTAAGAGAAGC+TGG | 0.506739 | contig165end:+23905 | MsG0080048001.01.T01:CDS |
| ATTTCCATCCCGTGCTCGGA+CGG | 0.518147 | contig165end:-24883 | MsG0080048001.01.T01:intergenic |
| CTATCCTTGCCGTCCGAGCA+CGG | 0.521827 | contig165end:+24874 | MsG0080048001.01.T01:CDS |
| TTACTTAGACGACTTGGTTG+TGG | 0.525174 | contig165end:+24927 | MsG0080048001.01.T01:CDS |
| GGACTGACATTTCCACTTGG+AGG | 0.525368 | contig165end:-24570 | MsG0080048001.01.T01:intergenic |
| TTGGTAATGGAGTACTGTCC+GGG | 0.526121 | contig165end:+25146 | MsG0080048001.01.T01:CDS |
| TACTCTGAGAAATGTTTCCC+TGG | 0.527525 | contig165end:-25200 | MsG0080048001.01.T01:intergenic |
| TATCCTTGCCGTCCGAGCAC+GGG | 0.529463 | contig165end:+24875 | MsG0080048001.01.T01:CDS |
| TGATTAGAGCGCAGACAGAA+AGG | 0.536427 | contig165end:+25048 | MsG0080048001.01.T01:CDS |
| GATTAGAGCGCAGACAGAAA+GGG | 0.538191 | contig165end:+25049 | MsG0080048001.01.T01:CDS |
| GCACCTACAAGAACACCAAA+AGG | 0.541410 | contig165end:+24125 | MsG0080048001.01.T01:CDS |
| ATCTGCATGCTTTAAGGCAA+CGG | 0.545374 | contig165end:+25174 | MsG0080048001.01.T01:CDS |
| CAAGGATAGCCTTCCACCTA+GGG | 0.547090 | contig165end:-24860 | MsG0080048001.01.T01:intergenic |
| TCTTTGGTAAGAGAAGATAC+AGG | 0.552491 | contig165end:+24065 | MsG0080048001.01.T01:CDS |
| TATCAGGCAAGAGTTCTTTG+TGG | 0.555533 | contig165end:-24166 | MsG0080048001.01.T01:intergenic |
| TGCAATGAAAGTTATGGACA+AGG | 0.561915 | contig165end:+25001 | MsG0080048001.01.T01:CDS |
| CTCAACCGAAATGGCAGGCG+AGG | 0.562858 | contig165end:-23869 | MsG0080048001.01.T01:intergenic |
| TTTAAGTTACTTAGACGACT+TGG | 0.567132 | contig165end:+24921 | MsG0080048001.01.T01:CDS |
| CATCCCGTGCTCGGACGGCA+AGG | 0.571455 | contig165end:-24878 | None:intergenic |
| GCAAGGATAGCCTTCCACCT+AGG | 0.576511 | contig165end:-24861 | None:intergenic |
| ATGAATATATTAGACATGGA+AGG | 0.578402 | contig165end:+23826 | None:intergenic |
| TTCTCTTGCTGAAACCGCAC+GGG | 0.579296 | contig165end:-23959 | MsG0080048001.01.T01:intergenic |
| AGCGATGCATTGACTAGTGA+TGG | 0.580747 | contig165end:+24666 | MsG0080048001.01.T01:CDS |
| CTTTAAGGCAACGGCAACCA+GGG | 0.582752 | contig165end:+25183 | MsG0080048001.01.T01:CDS |
| AGGAAATGACCCTAGGTGGA+AGG | 0.591031 | contig165end:+24851 | MsG0080048001.01.T01:CDS |
| TCAAAATGTGTATACAGCAT+AGG | 0.591758 | contig165end:-25104 | MsG0080048001.01.T01:intergenic |
| ACACCGAGTTGCACTCAACT+CGG | 0.592368 | contig165end:-24973 | MsG0080048001.01.T01:intergenic |
| GATACCTCAACCGAAATGGC+AGG | 0.593235 | contig165end:-23874 | MsG0080048001.01.T01:intergenic |
| GGATCTTCTTTGCCTCCAAG+TGG | 0.594354 | contig165end:+24558 | MsG0080048001.01.T01:CDS |
| ATCAGTATCGATAGGTTCTG+GGG | 0.594700 | contig165end:-24261 | MsG0080048001.01.T01:intergenic |
| CTTGCCGTCCGAGCACGGGA+TGG | 0.594869 | contig165end:+24879 | MsG0080048001.01.T01:CDS |
| GTATTAAAGGAAATGTTAGA+GGG | 0.599987 | contig165end:+24718 | MsG0080048001.01.T01:CDS |
| AGAAGCTGGTCAGAGACTAA+CGG | 0.604574 | contig165end:+23919 | MsG0080048001.01.T01:CDS |
| TCTCCGAGTTGAGTGCAACT+CGG | 0.605835 | contig165end:+24970 | MsG0080048001.01.T01:CDS |
| CGATACTGATCTCATGAGAA+CGG | 0.617988 | contig165end:+24274 | MsG0080048001.01.T01:CDS |
| CCTGGCCTCCAGTAGAGAAG+TGG | 0.620661 | contig165end:+24020 | MsG0080048001.01.T01:intron |
| ATGGAAGGTTGCAGAGACAA+AGG | 0.626282 | contig165end:+23841 | MsG0080048001.01.T01:CDS |
| ACAGCATAGGTAGAAATGGA+TGG | 0.626692 | contig165end:-25091 | MsG0080048001.01.T01:intergenic |
| AAAGCATGCAGATCTCCGCC+CGG | 0.630026 | contig165end:-25164 | MsG0080048001.01.T01:intergenic |
| TATTAAAGGAAATGTTAGAG+GGG | 0.632017 | contig165end:+24719 | MsG0080048001.01.T01:CDS |
| TGTGGACTGACATTTCCACT+TGG | 0.635759 | contig165end:-24573 | MsG0080048001.01.T01:intergenic |
| TCCAGTTGCTGTCATCGCTG+AGG | 0.643002 | contig165end:-24794 | MsG0080048001.01.T01:intergenic |
| GCTCATTGTTCTCACAACAC+TGG | 0.651462 | contig165end:-24613 | MsG0080048001.01.T01:intergenic |
| ATAAAGGAAATGACCCTAGG+TGG | 0.651834 | contig165end:+24847 | MsG0080048001.01.T01:CDS |
| CTCATGAGATCAGTATCGAT+AGG | 0.652434 | contig165end:-24269 | MsG0080048001.01.T01:intergenic |
| GTACTATCAACGCTACTGTG+TGG | 0.658348 | contig165end:-24591 | MsG0080048001.01.T01:intergenic |
| CACATAAAGGAAATGACCCT+AGG | 0.660669 | contig165end:+24844 | MsG0080048001.01.T01:CDS |
| TACCAAACATGAGAATCTGT+CGG | 0.665055 | contig165end:-25129 | MsG0080048001.01.T01:intergenic |
| GGACGTTTCATGTGCCCGTG+CGG | 0.676132 | contig165end:+23945 | MsG0080048001.01.T01:CDS |
| TCAGTATCGATAGGTTCTGG+GGG | 0.696999 | contig165end:-24260 | MsG0080048001.01.T01:intergenic |
| AGTCGAGCAAGTGATAGCAG+TGG | 0.705885 | contig165end:+24771 | MsG0080048001.01.T01:CDS |
| ATTTCTCAGAGTATGCTGCA+CGG | 0.724709 | contig165end:+25210 | MsG0080048001.01.T01:CDS |
| CTGGTCAGAGACTAACGGGG+AGG | 0.731270 | contig165end:+23924 | MsG0080048001.01.T01:CDS |
| AAGCTGGTCAGAGACTAACG+GGG | 0.780056 | contig165end:+23921 | MsG0080048001.01.T01:CDS |
| GTAATGGAGTACTGTCCGGG+CGG | 0.782265 | contig165end:+25149 | MsG0080048001.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTGTGATAGTATTAA+AGG | + | contig165end:24705-24724 | MsG0080048001.01.T01:CDS | 15.0% |
| !!! | CAAAAAACAAATTTTTGTGA+TGG | - | contig165end:25290-25309 | MsG0080048001.01.T01:intergenic | 20.0% |
| !!! | TTATTTTGCAATGAAAGTTA+TGG | + | contig165end:24995-25014 | MsG0080048001.01.T01:CDS | 20.0% |
| ! | AGTATTAAAGGAAATGTTAG+AGG | + | contig165end:24717-24736 | MsG0080048001.01.T01:CDS | 25.0% |
| ! | GTATTAAAGGAAATGTTAGA+GGG | + | contig165end:24718-24737 | MsG0080048001.01.T01:CDS | 25.0% |
| ! | TATTAAAGGAAATGTTAGAG+GGG | + | contig165end:24719-24738 | MsG0080048001.01.T01:CDS | 25.0% |
| ! | TCTTCAAAATTGAAAACGTA+TGG | - | contig165end:25330-25349 | MsG0080048001.01.T01:intergenic | 25.0% |
| !!! | TTCAATTTTGAAGATTTGTC+AGG | + | contig165end:25336-25355 | MsG0080048001.01.T01:intron | 25.0% |
| ATCTTCTCAAAAACTTGTCT+CGG | + | contig165end:24100-24119 | MsG0080048001.01.T01:CDS | 30.0% | |
| ATTTCCTTTATGTGGTTTAC+TGG | - | contig165end:24838-24857 | MsG0080048001.01.T01:intergenic | 30.0% | |
| TCAAAATGTGTATACAGCAT+AGG | - | contig165end:25107-25126 | MsG0080048001.01.T01:intergenic | 30.0% | |
| TGTCAAATGCAAGAATTCTT+TGG | + | contig165end:24049-24068 | MsG0080048001.01.T01:CDS | 30.0% | |
| ! | TTTAAGTTACTTAGACGACT+TGG | + | contig165end:24921-24940 | MsG0080048001.01.T01:CDS | 30.0% |
| AATAGGTCAGAACAAATCTG+AGG | + | contig165end:24307-24326 | MsG0080048001.01.T01:intron | 35.0% | |
| AGAACGGTTTATGTACCAAT+AGG | + | contig165end:24290-24309 | MsG0080048001.01.T01:CDS | 35.0% | |
| ATATGTACTCGCACAACTAT+TGG | - | contig165end:24643-24662 | MsG0080048001.01.T01:intergenic | 35.0% | |
| CAGATTCTCATGTTTGGTAA+TGG | + | contig165end:25133-25152 | MsG0080048001.01.T01:CDS | 35.0% | |
| CTGAAGAATCAAATGACATG+CGG | + | contig165end:24443-24462 | MsG0080048001.01.T01:intron | 35.0% | |
| GTATACAGCATAGGTAGAAA+TGG | - | contig165end:25098-25117 | MsG0080048001.01.T01:intergenic | 35.0% | |
| TACCAAACATGAGAATCTGT+CGG | - | contig165end:25132-25151 | MsG0080048001.01.T01:intergenic | 35.0% | |
| TACGAATCGAAAGATCTTCT+AGG | - | contig165end:24372-24391 | MsG0080048001.01.T01:intergenic | 35.0% | |
| TCTTTGGTAAGAGAAGATAC+AGG | + | contig165end:24065-24084 | MsG0080048001.01.T01:CDS | 35.0% | |
| TGCAATGAAAGTTATGGACA+AGG | + | contig165end:25001-25020 | MsG0080048001.01.T01:CDS | 35.0% | |
| ! | ATCGAAAGATCTTCTAGGAA+AGG | - | contig165end:24367-24386 | MsG0080048001.01.T01:intergenic | 35.0% |
| ! | TCAGATTTGTTCTGACCTAT+TGG | - | contig165end:24308-24327 | MsG0080048001.01.T01:intergenic | 35.0% |
| ! | TTGATCAGTTTTCAAAGCAC+AGG | + | contig165end:23982-24001 | MsG0080048001.01.T01:intron | 35.0% |
| !!! | TTTCCTTTTGGTGTTCTTGT+AGG | - | contig165end:24131-24150 | MsG0080048001.01.T01:intergenic | 35.0% |
| ACAGCATAGGTAGAAATGGA+TGG | - | contig165end:25094-25113 | MsG0080048001.01.T01:intergenic | 40.0% | |
| ACTGATCCAAGTTCATTTGC+TGG | + | contig165end:24227-24246 | MsG0080048001.01.T01:CDS | 40.0% | |
| AGTGCCAGTAAACCACATAA+AGG | + | contig165end:24831-24850 | MsG0080048001.01.T01:CDS | 40.0% | |
| ATAAAGGAAATGACCCTAGG+TGG | + | contig165end:24847-24866 | MsG0080048001.01.T01:CDS | 40.0% | |
| ATCAGATACCTCAACCGAAA+TGG | - | contig165end:23881-23900 | MsG0080048001.01.T01:intergenic | 40.0% | |
| ATTTCTCAGAGTATGCTGCA+CGG | + | contig165end:25210-25229 | MsG0080048001.01.T01:CDS | 40.0% | |
| CACATAAAGGAAATGACCCT+AGG | + | contig165end:24844-24863 | MsG0080048001.01.T01:CDS | 40.0% | |
| CGATACTGATCTCATGAGAA+CGG | + | contig165end:24274-24293 | MsG0080048001.01.T01:CDS | 40.0% | |
| CTAGGGTCATTTCCTTTATG+TGG | - | contig165end:24846-24865 | MsG0080048001.01.T01:intergenic | 40.0% | |
| CTCTTCAACATCTCGATATC+AGG | - | contig165end:24185-24204 | MsG0080048001.01.T01:intergenic | 40.0% | |
| TATCAGGCAAGAGTTCTTTG+TGG | - | contig165end:24169-24188 | MsG0080048001.01.T01:intergenic | 40.0% | |
| TGTTTCTCCTGCAGAAAGTA+TGG | + | contig165end:24420-24439 | MsG0080048001.01.T01:intron | 40.0% | |
| TTCTTTGTGGTCTGGAAAAG+AGG | - | contig165end:24156-24175 | MsG0080048001.01.T01:intergenic | 40.0% | |
| ! | AAGAGCAGCAGTGATTCTTT+TGG | + | contig165end:24200-24219 | MsG0080048001.01.T01:CDS | 40.0% |
| ! | AGAGCAGCAGTGATTCTTTT+GGG | + | contig165end:24201-24220 | MsG0080048001.01.T01:CDS | 40.0% |
| ! | GGAAAAGAGGCTTTTCCTTT+TGG | - | contig165end:24143-24162 | MsG0080048001.01.T01:intergenic | 40.0% |
| ! | TACTCTGAGAAATGTTTCCC+TGG | - | contig165end:25203-25222 | MsG0080048001.01.T01:intergenic | 40.0% |
| ! | TCAGTTTTCAAAGCACAGGA+TGG | + | contig165end:23986-24005 | MsG0080048001.01.T01:intron | 40.0% |
| !! | AGATCAGTATCGATAGGTTC+TGG | - | contig165end:24266-24285 | MsG0080048001.01.T01:intergenic | 40.0% |
| !! | ATCAGTATCGATAGGTTCTG+GGG | - | contig165end:24264-24283 | MsG0080048001.01.T01:intergenic | 40.0% |
| !! | ATCTGCATGCTTTAAGGCAA+CGG | + | contig165end:25174-25193 | MsG0080048001.01.T01:CDS | 40.0% |
| !! | CTCATGAGATCAGTATCGAT+AGG | - | contig165end:24272-24291 | MsG0080048001.01.T01:intergenic | 40.0% |
| !! | GATCAGTATCGATAGGTTCT+GGG | - | contig165end:24265-24284 | MsG0080048001.01.T01:intergenic | 40.0% |
| !! | TTACTTAGACGACTTGGTTG+TGG | + | contig165end:24927-24946 | MsG0080048001.01.T01:CDS | 40.0% |
| !! | TTTGGTAATGGAGTACTGTC+CGG | + | contig165end:25145-25164 | MsG0080048001.01.T01:CDS | 40.0% |
| AAGGGAGATATTGCAGTTGC+TGG | + | contig165end:25067-25086 | MsG0080048001.01.T01:CDS | 45.0% | |
| AGAAGCTGGTCAGAGACTAA+CGG | + | contig165end:23919-23938 | MsG0080048001.01.T01:CDS | 45.0% | |
| ATGGAAGGTTGCAGAGACAA+AGG | + | contig165end:23841-23860 | MsG0080048001.01.T01:CDS | 45.0% | |
| ATTCTCTTGCTGAAACCGCA+CGG | - | contig165end:23963-23982 | MsG0080048001.01.T01:intergenic | 45.0% | |
| CACAAAGCTGTAAGAGAAGC+TGG | + | contig165end:23905-23924 | MsG0080048001.01.T01:CDS | 45.0% | |
| CAGCTTCTCTTACAGCTTTG+TGG | - | contig165end:23907-23926 | MsG0080048001.01.T01:intergenic | 45.0% | |
| CGCTCTAATCAGCTTCTTTC+TGG | - | contig165end:25039-25058 | MsG0080048001.01.T01:intergenic | 45.0% | |
| CTAGCACCAGCAAATGAACT+TGG | - | contig165end:24236-24255 | MsG0080048001.01.T01:intergenic | 45.0% | |
| GACCGACAGATTCTCATGTT+TGG | + | contig165end:25127-25146 | MsG0080048001.01.T01:CDS | 45.0% | |
| GATTAGAGCGCAGACAGAAA+GGG | + | contig165end:25049-25068 | MsG0080048001.01.T01:CDS | 45.0% | |
| GCACCTACAAGAACACCAAA+AGG | + | contig165end:24125-24144 | MsG0080048001.01.T01:CDS | 45.0% | |
| GCTCATTGTTCTCACAACAC+TGG | - | contig165end:24616-24635 | MsG0080048001.01.T01:intergenic | 45.0% | |
| GGAGAAACAACAGCTAGGAT+TGG | - | contig165end:24409-24428 | MsG0080048001.01.T01:intergenic | 45.0% | |
| GTACTATCAACGCTACTGTG+TGG | - | contig165end:24594-24613 | MsG0080048001.01.T01:intergenic | 45.0% | |
| TCTTCAGCCATACTTTCTGC+AGG | - | contig165end:24430-24449 | MsG0080048001.01.T01:intergenic | 45.0% | |
| TGAGGAGAACGATTGCGTTT+GGG | + | contig165end:24537-24556 | MsG0080048001.01.T01:intron | 45.0% | |
| TGATTAGAGCGCAGACAGAA+AGG | + | contig165end:25048-25067 | MsG0080048001.01.T01:CDS | 45.0% | |
| ! | AACTCAGCCTTACCGTTTTC+AGG | + | contig165end:24466-24485 | MsG0080048001.01.T01:intron | 45.0% |
| ! | CAGCTTCTTTCTGGCAGATA+GGG | - | contig165end:25030-25049 | MsG0080048001.01.T01:intergenic | 45.0% |
| ! | CTTCTAGGAAAGGACCTTCA+AGG | - | contig165end:24357-24376 | MsG0080048001.01.T01:intergenic | 45.0% |
| ! | GAGCAGCAGTGATTCTTTTG+GGG | + | contig165end:24202-24221 | MsG0080048001.01.T01:CDS | 45.0% |
| ! | TCAGCTTCTTTCTGGCAGAT+AGG | - | contig165end:25031-25050 | MsG0080048001.01.T01:intergenic | 45.0% |
| ! | TGTGGACTGACATTTCCACT+TGG | - | contig165end:24576-24595 | MsG0080048001.01.T01:intergenic | 45.0% |
| !! | AGCGATGCATTGACTAGTGA+TGG | + | contig165end:24666-24685 | MsG0080048001.01.T01:CDS | 45.0% |
| !! | CGACTTGGTTGTGGTGATAT+TGG | + | contig165end:24936-24955 | MsG0080048001.01.T01:CDS | 45.0% |
| !! | TCAGTATCGATAGGTTCTGG+GGG | - | contig165end:24263-24282 | MsG0080048001.01.T01:intergenic | 45.0% |
| !! | TTGGTAATGGAGTACTGTCC+GGG | + | contig165end:25146-25165 | MsG0080048001.01.T01:CDS | 45.0% |
| AAGCTGGTCAGAGACTAACG+GGG | + | contig165end:23921-23940 | MsG0080048001.01.T01:CDS | 50.0% | |
| AATCGTTCTCCTCAGAACCC+GGG | - | contig165end:24531-24550 | MsG0080048001.01.T01:intergenic | 50.0% | |
| ACACCGAGTTGCACTCAACT+CGG | - | contig165end:24976-24995 | MsG0080048001.01.T01:intergenic | 50.0% | |
| AGGAAATGACCCTAGGTGGA+AGG | + | contig165end:24851-24870 | MsG0080048001.01.T01:CDS | 50.0% | |
| AGTCGAGCAAGTGATAGCAG+TGG | + | contig165end:24771-24790 | MsG0080048001.01.T01:CDS | 50.0% | |
| CAACTGAGCCACTTCTCTAC+TGG | - | contig165end:24031-24050 | MsG0080048001.01.T01:intergenic | 50.0% | |
| CAAGGATAGCCTTCCACCTA+GGG | - | contig165end:24863-24882 | MsG0080048001.01.T01:intergenic | 50.0% | |
| CAATCGTTCTCCTCAGAACC+CGG | - | contig165end:24532-24551 | MsG0080048001.01.T01:intergenic | 50.0% | |
| CCAAATTTCCATCCCGTGCT+CGG | - | contig165end:24890-24909 | MsG0080048001.01.T01:intergenic | 50.0% | |
| CGAGCACGGGATGGAAATTT+GGG | + | contig165end:24888-24907 | MsG0080048001.01.T01:CDS | 50.0% | |
| CTGAGGAGAACGATTGCGTT+TGG | + | contig165end:24536-24555 | MsG0080048001.01.T01:intron | 50.0% | |
| CTGCAGGAGAAACAACAGCT+AGG | - | contig165end:24414-24433 | MsG0080048001.01.T01:intergenic | 50.0% | |
| GAAGCTGGTCAGAGACTAAC+GGG | + | contig165end:23920-23939 | MsG0080048001.01.T01:CDS | 50.0% | |
| GATACCTCAACCGAAATGGC+AGG | - | contig165end:23877-23896 | MsG0080048001.01.T01:intergenic | 50.0% | |
| GCGGAGATCTGCATGCTTTA+AGG | + | contig165end:25168-25187 | MsG0080048001.01.T01:CDS | 50.0% | |
| GGACTGACATTTCCACTTGG+AGG | - | contig165end:24573-24592 | MsG0080048001.01.T01:intergenic | 50.0% | |
| GGATCTTCTTTGCCTCCAAG+TGG | + | contig165end:24558-24577 | MsG0080048001.01.T01:CDS | 50.0% | |
| GGCAAGAGTTCTTTGTGGTC+TGG | - | contig165end:24164-24183 | MsG0080048001.01.T01:intergenic | 50.0% | |
| TTCTCTTGCTGAAACCGCAC+GGG | - | contig165end:23962-23981 | MsG0080048001.01.T01:intergenic | 50.0% | |
| ! | AACGAAGAGCACGTCCTTGA+AGG | + | contig165end:24340-24359 | MsG0080048001.01.T01:intron | 50.0% |
| ! | GGTCAGAACAAATCTGAGGC+TGG | + | contig165end:24311-24330 | MsG0080048001.01.T01:intron | 50.0% |
| ! | TACTTCCTCGCCTGCCATTT+CGG | + | contig165end:23864-23883 | MsG0080048001.01.T01:CDS | 50.0% |
| ! | TCTCCGAGTTGAGTGCAACT+CGG | + | contig165end:24970-24989 | MsG0080048001.01.T01:CDS | 50.0% |
| !! | CTTTAAGGCAACGGCAACCA+GGG | + | contig165end:25183-25202 | MsG0080048001.01.T01:CDS | 50.0% |
| AAAGCATGCAGATCTCCGCC+CGG | - | contig165end:25167-25186 | MsG0080048000.01.T01:intergenic | 55.0% | |
| ACGAGCGCCTGAAAACGGTA+AGG | - | contig165end:24476-24495 | MsG0080048001.01.T01:intergenic | 55.0% | |
| ATCGTTCTCCTCAGAACCCG+GGG | - | contig165end:24530-24549 | MsG0080048001.01.T01:intergenic | 55.0% | |
| ATTTCCATCCCGTGCTCGGA+CGG | - | contig165end:24886-24905 | MsG0080048001.01.T01:intergenic | 55.0% | |
| CCGAGCACGGGATGGAAATT+TGG | + | contig165end:24887-24906 | MsG0080048001.01.T01:CDS | 55.0% | |
| CGAGAACTGTCTACTTCCCC+CGG | + | contig165end:24510-24529 | MsG0080048001.01.T01:intron | 55.0% | |
| CGGGGGAAGTAGACAGTTCT+CGG | - | contig165end:24512-24531 | MsG0080048001.01.T01:intergenic | 55.0% | |
| CTGAGCCACTTCTCTACTGG+AGG | - | contig165end:24028-24047 | MsG0080048001.01.T01:intergenic | 55.0% | |
| GAGAACTGTCTACTTCCCCC+GGG | + | contig165end:24511-24530 | MsG0080048001.01.T01:intron | 55.0% | |
| GATGCACGAGCGCCTGAAAA+CGG | - | contig165end:24481-24500 | MsG0080048001.01.T01:intergenic | 55.0% | |
| GCAAGGATAGCCTTCCACCT+AGG | - | contig165end:24864-24883 | MsG0080048001.01.T01:intergenic | 55.0% | |
| TCCAGTTGCTGTCATCGCTG+AGG | - | contig165end:24797-24816 | MsG0080048001.01.T01:intergenic | 55.0% | |
| !! | GCTTTAAGGCAACGGCAACC+AGG | + | contig165end:25182-25201 | MsG0080048001.01.T01:CDS | 55.0% |
| !! | GTAATGGAGTACTGTCCGGG+CGG | + | contig165end:25149-25168 | MsG0080048001.01.T01:CDS | 55.0% |
| AGGATGGCCCTATGCACTCC+TGG | + | contig165end:24002-24021 | MsG0080048001.01.T01:intron | 60.0% | |
| CCACTTCTCTACTGGAGGCC+AGG | - | contig165end:24023-24042 | MsG0080048001.01.T01:intergenic | 60.0% | |
| CCTGGCCTCCAGTAGAGAAG+TGG | + | contig165end:24020-24039 | MsG0080048001.01.T01:intron | 60.0% | |
| CTATCCTTGCCGTCCGAGCA+CGG | + | contig165end:24874-24893 | MsG0080048001.01.T01:CDS | 60.0% | |
| CTCAACCGAAATGGCAGGCG+AGG | - | contig165end:23872-23891 | MsG0080048001.01.T01:intergenic | 60.0% | |
| CTGGTCAGAGACTAACGGGG+AGG | + | contig165end:23924-23943 | MsG0080048001.01.T01:CDS | 60.0% | |
| GCCTCAGCGATGACAGCAAC+TGG | + | contig165end:24793-24812 | MsG0080048001.01.T01:CDS | 60.0% | |
| GGACGTTTCATGTGCCCGTG+CGG | + | contig165end:23945-23964 | MsG0080048001.01.T01:CDS | 60.0% | |
| TATCCTTGCCGTCCGAGCAC+GGG | + | contig165end:24875-24894 | MsG0080048001.01.T01:CDS | 60.0% | |
| TCGTTCTCCTCAGAACCCGG+GGG | - | contig165end:24529-24548 | MsG0080048001.01.T01:intergenic | 60.0% | |
| TCTACTTCCCCCGGGTTCTG+AGG | + | contig165end:24519-24538 | MsG0080048001.01.T01:intron | 60.0% | |
| ! | ACTGGAGGCCAGGAGTGCAT+AGG | - | contig165end:24013-24032 | MsG0080048001.01.T01:intergenic | 60.0% |
| ! | CTCGCCTGCCATTTCGGTTG+AGG | + | contig165end:23870-23889 | MsG0080048001.01.T01:CDS | 60.0% |
| ! | CTGGAGGCCAGGAGTGCATA+GGG | - | contig165end:24012-24031 | MsG0080048001.01.T01:intergenic | 60.0% |
| CATCCCGTGCTCGGACGGCA+AGG | - | contig165end:24881-24900 | MsG0080048001.01.T01:intergenic | 70.0% | |
| CTTGCCGTCCGAGCACGGGA+TGG | + | contig165end:24879-24898 | MsG0080048001.01.T01:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| contig165end | gene | 23841 | 25364 | 23841 | ID=MsG0080048001.01;Name=MsG0080048001.01 |
| contig165end | mRNA | 23841 | 25364 | 23841 | ID=MsG0080048001.01.T01;Parent=MsG0080048001.01;Name=MsG0080048001.01.T01;_AED=0.36;_eAED=0.37;_QI=0|0|0|1|0.66|0.75|4|0|366 |
| contig165end | exon | 23841 | 23966 | 23841 | ID=MsG0080048001.01.T01:exon:14217;Parent=MsG0080048001.01.T01 |
| contig165end | exon | 24035 | 24311 | 24035 | ID=MsG0080048001.01.T01:exon:14216;Parent=MsG0080048001.01.T01 |
| contig165end | exon | 24541 | 25231 | 24541 | ID=MsG0080048001.01.T01:exon:14215;Parent=MsG0080048001.01.T01 |
| contig165end | exon | 25358 | 25364 | 25358 | ID=MsG0080048001.01.T01:exon:14214;Parent=MsG0080048001.01.T01 |
| contig165end | CDS | 23841 | 23966 | 23841 | ID=MsG0080048001.01.T01:cds;Parent=MsG0080048001.01.T01 |
| contig165end | CDS | 24035 | 24311 | 24035 | ID=MsG0080048001.01.T01:cds;Parent=MsG0080048001.01.T01 |
| contig165end | CDS | 24541 | 25231 | 24541 | ID=MsG0080048001.01.T01:cds;Parent=MsG0080048001.01.T01 |
| contig165end | CDS | 25358 | 25364 | 25358 | ID=MsG0080048001.01.T01:cds;Parent=MsG0080048001.01.T01 |
| Gene Sequence |
| Protein sequence |
