AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680031344.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031344.01.T01 MTR_6g032990 77.469 324 20 4 1 271 1 324 1.13e-156 442
MsG0680031344.01.T01 MTR_2g086450 37.302 378 116 14 1 277 1 358 1.42e-48 166
MsG0680031344.01.T01 MTR_5g041350 62.366 93 34 1 35 126 8 100 1.37e-35 130
MsG0680031344.01.T01 MTR_4g081710 58.696 92 38 0 35 126 10 101 1.54e-31 119
MsG0680031344.01.T01 MTR_6g444980 58.163 98 35 1 15 112 14 105 9.76e-31 117
MsG0680031344.01.T01 MTR_6g444980 58.163 98 35 1 15 112 14 105 1.26e-30 118
MsG0680031344.01.T01 MTR_5g027440 61.333 75 29 0 24 98 7 81 3.21e-27 107
MsG0680031344.01.T01 MTR_1g090670 47.826 115 52 3 17 129 24 132 5.19e-27 107
MsG0680031344.01.T01 MTR_2g027800 35.319 235 132 9 23 252 19 238 1.34e-26 106
MsG0680031344.01.T01 MTR_2g027800 35.417 240 111 11 23 252 19 224 2.85e-26 105
MsG0680031344.01.T01 MTR_1g080330 60.563 71 28 0 28 98 161 231 3.92e-25 101
MsG0680031344.01.T01 MTR_7g098250 54.737 95 36 2 4 98 231 318 7.25e-25 103
MsG0680031344.01.T01 MTR_1g080330 60.563 71 28 0 28 98 161 231 8.17e-25 102
MsG0680031344.01.T01 MTR_7g088070 48.936 94 46 2 9 100 15 108 3.49e-24 99.0
MsG0680031344.01.T01 MTR_7g088070 48.936 94 46 2 9 100 15 108 3.72e-24 99.0
MsG0680031344.01.T01 MTR_7g115530 70.175 57 17 0 42 98 218 274 8.58e-24 98.2
MsG0680031344.01.T01 MTR_7g115530 70.175 57 17 0 42 98 218 274 1.54e-23 98.2
MsG0680031344.01.T01 MTR_7g115530 70.175 57 17 0 42 98 218 274 3.27e-23 97.8
MsG0680031344.01.T01 MTR_7g115530 70.175 57 17 0 42 98 218 274 3.41e-23 98.6
MsG0680031344.01.T01 MTR_1g053835 56.410 78 30 1 27 100 239 316 7.17e-23 97.4
MsG0680031344.01.T01 MTR_7g093030 61.667 60 23 0 41 100 211 270 3.26e-22 94.0
MsG0680031344.01.T01 MTR_7g093030 61.667 60 23 0 41 100 211 270 6.62e-22 94.4
MsG0680031344.01.T01 MTR_2g027860 54.054 74 34 0 27 100 34 107 1.29e-21 92.8
MsG0680031344.01.T01 MTR_1g053830 53.968 63 29 0 38 100 14 76 3.24e-21 86.3
MsG0680031344.01.T01 MTR_7g115530 71.154 52 15 0 42 93 218 269 6.50e-21 90.1
MsG0680031344.01.T01 MTR_7g115530 70.588 51 15 0 42 92 218 268 4.86e-20 87.8
MsG0680031344.01.T01 MTR_7g069660 47.126 87 35 1 20 95 38 124 5.58e-19 85.9
MsG0680031344.01.T01 MTR_2g023580 66.038 53 18 0 43 95 56 108 8.52e-19 83.6
MsG0680031344.01.T01 MTR_7g068600 56.522 69 27 1 42 107 13 81 3.21e-18 82.0
MsG0680031344.01.T01 MTR_1g053800 54.545 66 30 0 30 95 165 230 8.37e-18 82.0
MsG0680031344.01.T01 MTR_2g084230 54.167 72 31 1 24 95 81 150 1.15e-17 82.4
MsG0680031344.01.T01 MTR_2g084230 54.167 72 31 1 24 95 81 150 1.33e-17 81.3
MsG0680031344.01.T01 MTR_1g112370 55.882 68 30 0 43 110 23 90 2.82e-17 80.9
MsG0680031344.01.T01 MTR_4g021790 55.072 69 29 2 29 96 154 221 4.92e-17 79.3
MsG0680031344.01.T01 MTR_3g450310 52.381 63 27 1 42 104 19 78 5.50e-17 77.8
MsG0680031344.01.T01 MTR_8g086410 62.264 53 20 0 43 95 112 164 6.16e-17 80.5
MsG0680031344.01.T01 MTR_8g086410 62.264 53 20 0 43 95 110 162 6.41e-17 80.5
MsG0680031344.01.T01 MTR_0223s0040 58.065 62 23 1 43 104 19 77 7.06e-17 79.0
MsG0680031344.01.T01 MTR_8g086410 55.172 58 26 0 43 100 112 169 8.34e-16 77.4
MsG0680031344.01.T01 MTR_2g016220 60.377 53 21 0 43 95 90 142 9.09e-16 76.6
MsG0680031344.01.T01 MTR_2g016220 60.377 53 21 0 43 95 90 142 9.69e-16 76.6
MsG0680031344.01.T01 MTR_6g071625 60.377 53 21 0 43 95 203 255 1.58e-15 76.3
MsG0680031344.01.T01 MTR_4g021855 60.000 55 21 1 42 96 168 221 3.68e-15 74.3
MsG0680031344.01.T01 MTR_4g121020 55.932 59 25 1 38 96 107 164 7.29e-15 74.7
MsG0680031344.01.T01 MTR_4g121020 55.932 59 25 1 38 96 211 268 8.21e-15 74.7
MsG0680031344.01.T01 MTR_4g121020 55.932 59 25 1 38 96 211 268 8.36e-15 74.7
MsG0680031344.01.T01 MTR_5g029470 54.237 59 27 0 43 101 220 278 8.87e-15 73.9
MsG0680031344.01.T01 MTR_3g064840 54.237 59 27 0 43 101 275 333 1.01e-14 73.9
MsG0680031344.01.T01 MTR_8g066310 60.377 53 21 0 43 95 174 226 1.19e-14 73.6
MsG0680031344.01.T01 MTR_1g021520 52.542 59 28 0 43 101 127 185 1.70e-14 72.4
MsG0680031344.01.T01 MTR_2g450070 54.237 59 26 1 38 96 209 266 1.85e-14 73.6
MsG0680031344.01.T01 MTR_2g450070 54.237 59 26 1 38 96 209 266 1.86e-14 73.6
MsG0680031344.01.T01 MTR_2g016220 55.172 58 25 1 43 99 90 147 2.37e-14 72.8
MsG0680031344.01.T01 MTR_1g032570 45.455 77 33 2 38 106 196 271 2.58e-14 73.2
MsG0680031344.01.T01 MTR_1g032570 45.455 77 33 2 38 106 127 202 2.63e-14 73.2
MsG0680031344.01.T01 MTR_2g034960 51.667 60 28 1 37 96 206 264 3.27e-14 72.8
MsG0680031344.01.T01 MTR_4g021760 57.407 54 22 1 42 95 169 221 3.55e-14 71.6
MsG0680031344.01.T01 MTR_1g093080 48.529 68 35 0 42 109 211 278 1.36e-13 70.5
MsG0680031344.01.T01 MTR_4g131600 53.333 60 27 1 37 96 196 254 3.92e-13 69.7
MsG0680031344.01.T01 MTR_4g113140 53.448 58 27 0 39 96 232 289 4.37e-13 69.3
MsG0680031344.01.T01 MTR_4g064730 47.222 72 36 2 39 109 128 198 4.42e-13 68.6
MsG0680031344.01.T01 MTR_2g090675 45.122 82 43 2 42 122 161 241 5.29e-13 68.9
MsG0680031344.01.T01 MTR_4g021845 56.863 51 21 1 42 92 168 217 6.70e-13 67.0
MsG0680031344.01.T01 MTR_4g078810 54.386 57 25 1 42 98 158 213 7.33e-13 68.6
MsG0680031344.01.T01 MTR_7g026400 41.053 95 52 3 42 136 157 247 8.60e-13 68.6
MsG0680031344.01.T01 MTR_1g013170 56.364 55 23 1 42 96 191 244 1.00e-12 68.2
MsG0680031344.01.T01 MTR_7g089010 54.545 55 24 1 42 96 91 144 1.26e-12 67.0
MsG0680031344.01.T01 MTR_3g086100 37.500 96 56 2 38 130 124 218 1.27e-12 67.8
MsG0680031344.01.T01 MTR_4g086835 44.595 74 40 1 39 111 271 344 1.27e-12 67.8
MsG0680031344.01.T01 MTR_3g086100 37.500 96 56 2 38 130 195 289 1.54e-12 67.8
MsG0680031344.01.T01 MTR_8g079940 47.887 71 36 1 42 112 209 278 2.41e-12 67.0
MsG0680031344.01.T01 MTR_5g017980 52.727 55 26 0 42 96 193 247 5.03e-12 65.5
MsG0680031344.01.T01 MTR_4g131570 51.667 60 28 1 38 97 199 257 5.48e-12 66.2
MsG0680031344.01.T01 MTR_3g106220 49.153 59 29 1 38 96 194 251 6.44e-12 65.9
MsG0680031344.01.T01 MTR_0450s0040 31.667 120 76 3 42 160 169 283 1.17e-11 64.7
MsG0680031344.01.T01 MTR_4g131580 51.667 60 28 1 38 97 196 254 1.81e-11 64.7
MsG0680031344.01.T01 MTR_4g086835 44.595 74 39 2 39 111 271 343 2.15e-11 63.9
MsG0680031344.01.T01 MTR_6g045327 50.000 56 27 1 42 97 172 226 2.16e-11 63.9
MsG0680031344.01.T01 MTR_5g054300 50.909 55 27 0 42 96 198 252 2.62e-11 63.5
MsG0680031344.01.T01 MTR_7g093010 50.909 55 27 0 41 95 212 266 3.54e-11 63.2
MsG0680031344.01.T01 MTR_1g093080 52.941 51 24 0 42 92 211 261 8.26e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031344.01.T01 AT3G04030 47.735 287 92 6 1 233 1 283 1.24e-70 223
MsG0680031344.01.T01 AT5G18240 45.614 285 100 5 1 233 1 282 7.76e-67 213
MsG0680031344.01.T01 AT5G18240 45.614 285 100 5 1 233 1 282 7.76e-67 213
MsG0680031344.01.T01 AT5G18240 44.983 289 100 5 1 233 1 286 4.42e-66 211
MsG0680031344.01.T01 AT5G18240 44.674 291 100 5 1 233 1 288 1.50e-65 210
MsG0680031344.01.T01 AT5G18240 44.674 291 100 5 1 233 1 288 1.50e-65 210
MsG0680031344.01.T01 AT3G04030 65.854 123 31 3 1 116 1 119 2.79e-48 165
MsG0680031344.01.T01 AT3G04030 50.943 106 51 1 129 233 184 289 2.81e-19 87.0
MsG0680031344.01.T01 AT3G04030 64.228 123 32 4 1 116 1 118 4.20e-45 157
MsG0680031344.01.T01 AT3G04030 50.943 106 51 1 129 233 183 288 2.96e-19 87.0
MsG0680031344.01.T01 AT3G04030 41.063 207 75 3 74 233 1 207 7.15e-34 125
MsG0680031344.01.T01 AT3G24120 40.526 190 64 4 26 166 25 214 2.18e-32 121
MsG0680031344.01.T01 AT4G13640 39.572 187 64 3 26 163 21 207 2.69e-32 120
MsG0680031344.01.T01 AT3G24120 39.896 193 64 4 26 166 25 217 6.55e-32 120
MsG0680031344.01.T01 AT4G13640 38.947 190 64 3 26 163 21 210 7.05e-32 119
MsG0680031344.01.T01 AT1G69580 70.513 78 23 0 28 105 20 97 1.77e-31 119
MsG0680031344.01.T01 AT1G69580 70.513 78 23 0 28 105 20 97 2.24e-31 119
MsG0680031344.01.T01 AT5G18240 38.350 206 81 2 74 233 1 206 2.88e-31 119
MsG0680031344.01.T01 AT5G45580 57.447 94 32 1 26 111 7 100 1.25e-30 116
MsG0680031344.01.T01 AT1G79430 62.195 82 31 0 32 113 24 105 7.18e-30 115
MsG0680031344.01.T01 AT3G12730 55.914 93 37 1 31 123 12 100 1.71e-29 112
MsG0680031344.01.T01 AT5G45580 59.524 84 26 1 36 111 1 84 3.05e-28 109
MsG0680031344.01.T01 AT3G04450 52.941 85 37 1 14 98 213 294 6.17e-24 99.0
MsG0680031344.01.T01 AT3G04450 52.941 85 37 1 14 98 173 254 7.34e-24 100
MsG0680031344.01.T01 AT3G04450 52.941 85 37 1 14 98 173 254 7.34e-24 100
MsG0680031344.01.T01 AT3G04450 52.941 85 37 1 14 98 213 294 9.46e-24 100
MsG0680031344.01.T01 AT5G29000 68.966 58 18 0 41 98 187 244 2.15e-23 98.6
MsG0680031344.01.T01 AT5G29000 68.966 58 18 0 41 98 187 244 2.15e-23 98.6
MsG0680031344.01.T01 AT5G29000 68.966 58 18 0 41 98 230 287 2.80e-23 97.1
MsG0680031344.01.T01 AT5G29000 68.966 58 18 0 41 98 230 287 3.03e-23 98.6
MsG0680031344.01.T01 AT4G28610 57.333 75 32 0 42 116 225 299 1.55e-22 96.7
MsG0680031344.01.T01 AT5G06800 47.368 95 43 1 6 100 163 250 1.92e-22 94.4
MsG0680031344.01.T01 AT2G01060 58.209 67 28 0 41 107 14 80 2.17e-22 94.4
MsG0680031344.01.T01 AT5G06800 66.102 59 20 0 42 100 192 250 9.28e-22 94.0
MsG0680031344.01.T01 AT5G06800 66.102 59 20 0 42 100 192 250 9.68e-22 94.0
MsG0680031344.01.T01 AT2G20400 53.425 73 34 0 44 116 233 305 2.27e-20 90.1
MsG0680031344.01.T01 AT3G04030 50.943 106 51 1 129 233 108 213 1.78e-19 86.7
MsG0680031344.01.T01 AT3G04030 67.442 43 14 0 74 116 1 43 5.73e-13 68.2
MsG0680031344.01.T01 AT3G13040 57.143 63 27 0 38 100 237 299 3.58e-19 87.0
MsG0680031344.01.T01 AT3G13040 57.143 63 27 0 38 100 237 299 3.58e-19 87.0
MsG0680031344.01.T01 AT3G13040 57.143 63 27 0 38 100 237 299 3.58e-19 87.0
MsG0680031344.01.T01 AT2G20400 63.636 55 20 0 44 98 233 287 4.23e-19 86.7
MsG0680031344.01.T01 AT2G06020 46.988 83 40 2 27 105 68 150 1.69e-18 84.0
MsG0680031344.01.T01 AT1G14600 64.286 56 20 0 43 98 24 79 4.59e-18 82.0
MsG0680031344.01.T01 AT2G42660 62.264 53 20 0 43 95 51 103 1.06e-17 80.9
MsG0680031344.01.T01 AT4G04605 62.264 53 20 0 43 95 15 67 1.06e-17 80.1
MsG0680031344.01.T01 AT2G02060 64.151 53 19 0 43 95 30 82 2.68e-17 79.7
MsG0680031344.01.T01 AT2G02060 64.151 53 19 0 43 95 30 82 2.68e-17 79.7
MsG0680031344.01.T01 AT2G38300 62.264 53 20 0 43 95 55 107 3.14e-17 80.9
MsG0680031344.01.T01 AT2G40260 62.264 53 20 0 43 95 83 135 6.86e-17 80.5
MsG0680031344.01.T01 AT5G42630 45.263 95 46 3 2 95 69 158 8.93e-16 75.1
MsG0680031344.01.T01 AT5G16560 55.932 59 26 0 43 101 220 278 8.94e-16 77.0
MsG0680031344.01.T01 AT4G04580 56.604 53 23 0 43 95 15 67 1.47e-15 73.2
MsG0680031344.01.T01 AT5G42630 45.263 95 46 3 2 95 69 158 1.94e-15 75.1
MsG0680031344.01.T01 AT1G32240 37.168 113 51 3 2 111 188 283 3.55e-15 75.1
MsG0680031344.01.T01 AT1G32240 48.571 70 35 1 43 111 214 283 4.20e-15 74.7
MsG0680031344.01.T01 AT4G17695 43.529 85 47 1 43 126 165 249 9.86e-15 73.6
MsG0680031344.01.T01 AT3G46640 45.556 90 45 3 21 109 125 211 1.26e-14 73.2
MsG0680031344.01.T01 AT3G16857 58.182 55 22 1 42 96 237 290 1.38e-14 73.9
MsG0680031344.01.T01 AT3G16857 58.182 55 22 1 42 96 167 220 1.41e-14 73.9
MsG0680031344.01.T01 AT3G16857 58.182 55 22 1 42 96 237 290 1.60e-14 73.9
MsG0680031344.01.T01 AT3G46640 45.556 90 45 3 21 109 125 211 1.77e-14 72.8
MsG0680031344.01.T01 AT3G46640 45.556 90 45 3 21 109 125 211 1.77e-14 72.8
MsG0680031344.01.T01 AT2G40970 46.753 77 35 2 25 96 83 158 3.04e-13 68.2
MsG0680031344.01.T01 AT5G59570 51.724 58 27 1 39 96 138 194 3.67e-13 68.6
MsG0680031344.01.T01 AT5G59570 51.724 58 27 1 39 96 138 194 3.67e-13 68.6
MsG0680031344.01.T01 AT5G05090 54.545 55 24 1 42 96 81 134 4.29e-13 68.2
MsG0680031344.01.T01 AT2G03500 51.724 58 28 0 39 96 230 287 4.91e-13 68.9
MsG0680031344.01.T01 AT3G10760 54.545 55 24 1 42 96 105 158 5.62e-13 68.6
MsG0680031344.01.T01 AT5G58080 51.471 68 32 1 29 96 181 247 5.91e-13 69.3
MsG0680031344.01.T01 AT2G20570 56.140 57 24 1 42 98 153 208 8.51e-13 68.2
MsG0680031344.01.T01 AT2G20570 56.364 55 23 1 44 98 171 224 1.03e-12 68.2
MsG0680031344.01.T01 AT1G25550 51.724 58 28 0 39 96 206 263 1.29e-12 67.4
MsG0680031344.01.T01 AT5G44190 50.877 57 27 1 42 98 147 202 1.72e-12 67.4
MsG0680031344.01.T01 AT2G01760 50.909 55 26 1 42 96 135 188 1.78e-12 67.0
MsG0680031344.01.T01 AT5G44190 50.877 57 27 1 42 98 147 202 2.25e-12 67.0
MsG0680031344.01.T01 AT2G01760 50.909 55 26 1 42 96 200 253 2.71e-12 66.6
MsG0680031344.01.T01 AT2G01760 50.909 55 26 1 42 96 228 281 4.08e-12 66.2
MsG0680031344.01.T01 AT3G62670 44.737 76 38 1 26 97 195 270 6.95e-12 65.5
MsG0680031344.01.T01 AT1G68670 43.243 74 42 0 39 112 212 285 6.98e-12 65.5
MsG0680031344.01.T01 AT5G07210 46.377 69 35 2 29 96 208 275 1.36e-11 65.1
MsG0680031344.01.T01 AT5G07210 46.377 69 35 2 29 96 216 283 1.48e-11 65.1
MsG0680031344.01.T01 AT4G04555 49.057 53 27 0 43 95 15 67 2.60e-11 59.7
MsG0680031344.01.T01 AT1G67710 50.000 56 28 0 44 99 121 176 5.55e-11 63.2
MsG0680031344.01.T01 AT1G67710 50.000 56 28 0 44 99 130 185 6.51e-11 62.8
MsG0680031344.01.T01 AT1G67710 50.000 56 28 0 44 99 195 250 7.63e-11 62.8
MsG0680031344.01.T01 AT4G37180 49.057 53 27 0 44 96 212 264 8.95e-11 62.0

Find 75 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCCCTTGTTATGTATTTCT+TGG 0.160531 6:+18643302 None:intergenic
ATTGTCAAATTTGTCATAAA+TGG 0.232689 6:+18642748 None:intergenic
TTCATGAAGAAGAAAACTTT+TGG 0.239569 6:-18643034 MsG0680031344.01.T01:CDS
CAAGGAACATGCATGCTTTA+AGG 0.246102 6:-18645409 MsG0680031344.01.T01:CDS
CATAACAAGGGCATGAATTA+TGG 0.265019 6:-18643292 MsG0680031344.01.T01:CDS
CCTGTAGATGACTCTTTAAA+TGG 0.268102 6:+18644990 None:intergenic
TGTATGGATTTAATTTAAAA+AGG 0.273032 6:-18642636 MsG0680031344.01.T01:three_prime_UTR
AAGAGACTTGACGTCCTTTC+TGG 0.283871 6:+18643074 None:intergenic
ATGCTAAGCCAAGACTAAAA+TGG 0.303611 6:-18645328 MsG0680031344.01.T01:CDS
TTTATAAAGAAAATGCTCTT+AGG 0.311300 6:+18646044 None:intergenic
AATACTGGCAGCAGTAAAAT+TGG 0.320029 6:-18644715 MsG0680031344.01.T01:intron
ATGAATTATGGAGCTTATAA+TGG 0.338954 6:-18643280 MsG0680031344.01.T01:CDS
TTTCTTGATGGCAGAAATAC+AGG 0.364378 6:-18644765 MsG0680031344.01.T01:intron
GTTCTGAAAATTTGGAATCA+AGG 0.366198 6:+18643428 None:intergenic
ACACTAGGAAGACAAAATTT+AGG 0.366651 6:-18643517 MsG0680031344.01.T01:CDS
GAAACCATTGATTATTCAAT+GGG 0.380276 6:-18643361 MsG0680031344.01.T01:CDS
TATTACAAAGGAAGATTTAG+AGG 0.380797 6:-18643004 MsG0680031344.01.T01:exon
TCTTTGAGAGTCCTCACTAT+TGG 0.388306 6:+18643327 None:intergenic
TTGAAACTTATGGGAATTCC+TGG 0.388557 6:-18645025 MsG0680031344.01.T01:CDS
GGAAATGGAAGTTCAGATTC+AGG 0.388688 6:-18645368 MsG0680031344.01.T01:CDS
CACATGCAAGGAGGAGGAAA+TGG 0.404031 6:-18645383 MsG0680031344.01.T01:CDS
ATGAATGGACAAACAAATAC+TGG 0.416324 6:-18644730 MsG0680031344.01.T01:CDS
ATCAAATGATAAAGTACTAA+AGG 0.422241 6:-18643212 MsG0680031344.01.T01:CDS
CCTTCACTTCTTCACACAAT+GGG 0.422809 6:+18643257 None:intergenic
ATCTTCAAGAGCACTTCCTT+AGG 0.424937 6:+18645915 None:intergenic
AAGACAAAATTTAGGAGCTA+TGG 0.425889 6:-18643509 MsG0680031344.01.T01:CDS
TGAAACCATTGATTATTCAA+TGG 0.427403 6:-18643362 MsG0680031344.01.T01:CDS
TTGACTTGAATGGTTTCAGC+TGG 0.431912 6:-18642822 MsG0680031344.01.T01:three_prime_UTR
GTCCTTTCTGGTACTTCATC+CGG 0.441823 6:+18643086 None:intergenic
AATCAATTTCATTTGTCGAC+AGG 0.446239 6:-18645883 MsG0680031344.01.T01:intron
TCAAATGATAAAGTACTAAA+GGG 0.461053 6:-18643211 MsG0680031344.01.T01:intron
ATGAAACGTTCATGAAGATC+TGG 0.465503 6:+18645302 None:intergenic
TCTTCAAGAGCACTTCCTTA+GGG 0.466846 6:+18645916 None:intergenic
AAAGGAAGATTTAGAGGGTG+AGG 0.471041 6:-18642998 MsG0680031344.01.T01:exon
TAAAAGAAATGAATGTACTT+TGG 0.477579 6:-18643405 MsG0680031344.01.T01:CDS
AATTCTACATTACAATCTGC+TGG 0.478296 6:+18642693 None:intergenic
ACTCCCCATTGAATAATCAA+TGG 0.486204 6:+18643357 None:intergenic
AAGAAGCACCATTGTCATCA+TGG 0.491000 6:+18642860 None:intergenic
GAGAGAGACCTTGTGATGAA+TGG 0.503219 6:+18646066 None:intergenic
AGGATCAGTAGAAGCATGAA+TGG 0.507423 6:-18644745 MsG0680031344.01.T01:CDS
ACACTTACAACTACGAATAG+AGG 0.508720 6:-18643583 MsG0680031344.01.T01:CDS
ATTGAAGCAGTCAATCAACT+TGG 0.511257 6:-18645281 MsG0680031344.01.T01:CDS
TCACCTTCTTGTGTTTGTTG+AGG 0.515103 6:+18643382 None:intergenic
AAGATTTAGAGGGTGAGGAA+TGG 0.517235 6:-18642993 MsG0680031344.01.T01:exon
CCATTTAAAGAGTCATCTAC+AGG 0.530254 6:-18644990 MsG0680031344.01.T01:intron
AGACAAAATTTAGGAGCTAT+GGG 0.535664 6:-18643508 MsG0680031344.01.T01:CDS
TCCTTCACTTCTTCACACAA+TGG 0.537283 6:+18643256 None:intergenic
TTCTTATTCCATTCATCACA+AGG 0.539743 6:-18646074 MsG0680031344.01.T01:five_prime_UTR
AAATGGTATAATGTAAGTCC+AGG 0.549657 6:+18645007 None:intergenic
CTACATTACAATCTGCTGGT+TGG 0.550665 6:+18642697 None:intergenic
TTTGGAATCAAGGCTTTCAG+TGG 0.551708 6:+18643438 None:intergenic
CAACTACGAATAGAGGCTCA+AGG 0.553992 6:-18643576 MsG0680031344.01.T01:CDS
AGTCTCTTGTCTATGAACAT+AGG 0.562654 6:-18643059 MsG0680031344.01.T01:CDS
TAGTACTTTATCATTTGATG+AGG 0.567615 6:+18643216 None:intergenic
GCTGATGTTGCTGATGATGA+TGG 0.568202 6:+18645438 None:intergenic
ACAATTGAGTTGAAACCCTA+AGG 0.568281 6:-18645931 MsG0680031344.01.T01:five_prime_UTR
GAAGCAGTCAATCAACTTGG+AGG 0.572703 6:-18645278 MsG0680031344.01.T01:CDS
AGAAGCACCATTGTCATCAT+GGG 0.577045 6:+18642861 None:intergenic
AGGATGCACATGCAAGGAGG+AGG 0.577430 6:-18645389 MsG0680031344.01.T01:CDS
TATGGGACTTGATGCTGCAA+AGG 0.581623 6:-18643491 MsG0680031344.01.T01:CDS
ATTACAAAGGAAGATTTAGA+GGG 0.583154 6:-18643003 MsG0680031344.01.T01:exon
AGTACTTTATCATTTGATGA+GGG 0.589703 6:+18643217 None:intergenic
AGACCAAGAAATACATAACA+AGG 0.589922 6:-18643305 MsG0680031344.01.T01:CDS
TGGCCTCAACAAACACAAGA+AGG 0.602378 6:-18643385 MsG0680031344.01.T01:CDS
AGCAACATCAGCAACAAGCA+AGG 0.613902 6:-18645427 MsG0680031344.01.T01:CDS
CCCATTGTGTGAAGAAGTGA+AGG 0.616973 6:-18643257 MsG0680031344.01.T01:CDS
GCTTTAAGGATGCACATGCA+AGG 0.621046 6:-18645395 MsG0680031344.01.T01:CDS
TTTGGGGAGAAATATTACAA+AGG 0.634895 6:-18643016 MsG0680031344.01.T01:CDS
AACTACGAATAGAGGCTCAA+GGG 0.640142 6:-18643575 MsG0680031344.01.T01:CDS
GAGTTTCTTAACCAATAGTG+AGG 0.644446 6:-18643338 MsG0680031344.01.T01:CDS
GACCGGATGAAGTACCAGAA+AGG 0.645035 6:-18643088 MsG0680031344.01.T01:CDS
GACCAAGAAATACATAACAA+GGG 0.647897 6:-18643304 MsG0680031344.01.T01:CDS
TTGAATTCCCATGATGACAA+TGG 0.705519 6:-18642868 MsG0680031344.01.T01:three_prime_UTR
AAACCATTGATTATTCAATG+GGG 0.713201 6:-18643360 MsG0680031344.01.T01:CDS
TTAAGGATGCACATGCAAGG+AGG 0.740458 6:-18645392 MsG0680031344.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTAATAATAATTGTGA+CGG + Chr6:18645054-18645073 None:intergenic 10.0%
!! AATTTGTACATATATAATTT+AGG + Chr6:18643476-18643495 None:intergenic 10.0%
!! TATAAATACAAATAGTAAAA+GGG + Chr6:18643762-18643781 None:intergenic 10.0%
!! AAAAATGATTGTTATATGTA+TGG - Chr6:18646053-18646072 MsG0680031344.01.T01:five_prime_UTR 15.0%
!! GTATAAATACAAATAGTAAA+AGG + Chr6:18643763-18643782 None:intergenic 15.0%
!!! CTTTTATATTTTGAACAAAA+TGG + Chr6:18644271-18644290 None:intergenic 15.0%
!!! GTCTTTTATTTCTTATAAAT+AGG - Chr6:18645595-18645614 MsG0680031344.01.T01:intron 15.0%
!!! TGTATGGATTTAATTTAAAA+AGG - Chr6:18646069-18646088 MsG0680031344.01.T01:five_prime_UTR 15.0%
!!! TTATGAAGTGATTTAAAATT+TGG + Chr6:18644932-18644951 None:intergenic 15.0%
!!! TTCATATTTTTGAGTTTTTA+TGG - Chr6:18643881-18643900 MsG0680031344.01.T01:intron 15.0%
!! ATAGAATAAGAGAAATAGAA+AGG + Chr6:18644668-18644687 None:intergenic 20.0%
!! ATTGTCAAATTTGTCATAAA+TGG + Chr6:18645960-18645979 None:intergenic 20.0%
!! CAAAAATGATCAATGATTTA+CGG - Chr6:18644637-18644656 MsG0680031344.01.T01:intron 20.0%
!! CTTAAAGGTTATATAAATGA+TGG + Chr6:18643550-18643569 None:intergenic 20.0%
!! TAAAAGAAATGAATGTACTT+TGG - Chr6:18645300-18645319 MsG0680031344.01.T01:CDS 20.0%
!! TAGAATAAGAGAAATAGAAA+GGG + Chr6:18644667-18644686 None:intergenic 20.0%
!! TGAAAAGTAGTAAAAATAGA+TGG + Chr6:18643865-18643884 None:intergenic 20.0%
!! TTACAATTACAAATGATTGT+CGG + Chr6:18644888-18644907 None:intergenic 20.0%
!! TTCATTTATATCTGAATTTC+TGG + Chr6:18644340-18644359 None:intergenic 20.0%
!! TTTATAAAGAAAATGCTCTT+AGG + Chr6:18642664-18642683 None:intergenic 20.0%
!!! AAAAACAGTTTTGAAACTTA+TGG - Chr6:18643670-18643689 MsG0680031344.01.T01:intron 20.0%
!!! AAAACAGTTTTGAAACTTAT+GGG - Chr6:18643671-18643690 MsG0680031344.01.T01:intron 20.0%
!!! AATATTTTGCATCTTGTTTT+TGG - Chr6:18645928-18645947 MsG0680031344.01.T01:five_prime_UTR 20.0%
!!! AGTTTTTATGGTTTATTTGA+AGG - Chr6:18643893-18643912 MsG0680031344.01.T01:intron 20.0%
!!! ATAAGTTTCAAAACTGTTTT+TGG + Chr6:18643671-18643690 None:intergenic 20.0%
!!! ATCAAATGATAAAGTACTAA+AGG - Chr6:18645493-18645512 MsG0680031344.01.T01:intron 20.0%
!!! TCAAATGATAAAGTACTAAA+GGG - Chr6:18645494-18645513 MsG0680031344.01.T01:intron 20.0%
!!! TTATTGATTTACTTTCTTGA+TGG - Chr6:18643928-18643947 MsG0680031344.01.T01:intron 20.0%
!!! TTATTTCTTATAAATAGGAC+CGG - Chr6:18645600-18645619 MsG0680031344.01.T01:intron 20.0%
!!! TTCTTTTAGTTCTGAAAATT+TGG + Chr6:18645288-18645307 None:intergenic 20.0%
!!! TTTTCAAGATCTAATCTAAA+AGG + Chr6:18644514-18644533 None:intergenic 20.0%
!!! TTTTGATCCTAATATAATTG+AGG - Chr6:18645026-18645045 MsG0680031344.01.T01:CDS 20.0%
!!! TTTTTTCATATTGTGGAAAT+CGG - Chr6:18642897-18642916 MsG0680031344.01.T01:three_prime_UTR 20.0%
!!! TTTTTTGTCTAGAAGAAAAA+AGG - Chr6:18642727-18642746 MsG0680031344.01.T01:three_prime_UTR 20.0%
! AAAGAATATTCTCTAATGTG+AGG - Chr6:18644287-18644306 MsG0680031344.01.T01:intron 25.0%
! AATTATTCTTCTCAAGATCA+AGG + Chr6:18643177-18643196 None:intergenic 25.0%
! ACTTTAAGCATCAATCTTAA+AGG + Chr6:18643565-18643584 None:intergenic 25.0%
! AGTACTTTATCATTTGATGA+GGG + Chr6:18645491-18645510 None:intergenic 25.0%
! ATGAATTATGGAGCTTATAA+TGG - Chr6:18645425-18645444 MsG0680031344.01.T01:CDS 25.0%
! ATTACAAAGGAAGATTTAGA+GGG - Chr6:18645702-18645721 MsG0680031344.01.T01:intron 25.0%
! ATTGTTCTTACTTGTTTGTT+TGG + Chr6:18644228-18644247 None:intergenic 25.0%
! CATATGAAAGATTTAAGCAT+AGG - Chr6:18644199-18644218 MsG0680031344.01.T01:intron 25.0%
! CTTAAAGTGTAAAACATCTT+TGG - Chr6:18643577-18643596 MsG0680031344.01.T01:CDS 25.0%
! GATTTGAATAATCCTCAATT+TGG - Chr6:18644477-18644496 MsG0680031344.01.T01:intron 25.0%
! GTTAAAAAATCACTGTACTA+TGG + Chr6:18644720-18644739 None:intergenic 25.0%
! TAGTACTTTATCATTTGATG+AGG + Chr6:18645492-18645511 None:intergenic 25.0%
! TATTACAAAGGAAGATTTAG+AGG - Chr6:18645701-18645720 MsG0680031344.01.T01:intron 25.0%
! TATTCTTCTTATGAAAGACA+TGG + Chr6:18644060-18644079 None:intergenic 25.0%
!! AAACCATTGATTATTCAATG+GGG - Chr6:18645345-18645364 MsG0680031344.01.T01:CDS 25.0%
!! AACCATTCAAGTCAAATTTT+TGG + Chr6:18645878-18645897 None:intergenic 25.0%
!! GAAACCATTGATTATTCAAT+GGG - Chr6:18645344-18645363 MsG0680031344.01.T01:CDS 25.0%
!! GAAATTTGTCGATTATCAAT+AGG + Chr6:18645541-18645560 None:intergenic 25.0%
!! TCATGAAGAAGAAAACTTTT+GGG - Chr6:18645672-18645691 MsG0680031344.01.T01:intron 25.0%
!! TGAAACCATTGATTATTCAA+TGG - Chr6:18645343-18645362 MsG0680031344.01.T01:CDS 25.0%
!! TTCATGAAGAAGAAAACTTT+TGG - Chr6:18645671-18645690 MsG0680031344.01.T01:intron 25.0%
!! TTTTTCATATTGTGGAAATC+GGG - Chr6:18642898-18642917 MsG0680031344.01.T01:three_prime_UTR 25.0%
!!! ATATAAATGATGGATCACAT+TGG + Chr6:18643540-18643559 None:intergenic 25.0%
!!! CATCACATTTTTTCATATTG+TGG - Chr6:18642890-18642909 MsG0680031344.01.T01:three_prime_UTR 25.0%
!!! TGCGATAAAGTTCTTATTTT+AGG + Chr6:18642936-18642955 None:intergenic 25.0%
AAATGGTATAATGTAAGTCC+AGG + Chr6:18643701-18643720 None:intergenic 30.0%
AAGACAAAATTTAGGAGCTA+TGG - Chr6:18645196-18645215 MsG0680031344.01.T01:intron 30.0%
AATCAATTTCATTTGTCGAC+AGG - Chr6:18642822-18642841 MsG0680031344.01.T01:three_prime_UTR 30.0%
AATTCTACATTACAATCTGC+TGG + Chr6:18646015-18646034 None:intergenic 30.0%
ACACTAGGAAGACAAAATTT+AGG - Chr6:18645188-18645207 MsG0680031344.01.T01:intron 30.0%
AGACAAAATTTAGGAGCTAT+GGG - Chr6:18645197-18645216 MsG0680031344.01.T01:intron 30.0%
AGACCAAGAAATACATAACA+AGG - Chr6:18645400-18645419 MsG0680031344.01.T01:CDS 30.0%
AGTACATTCTCTTCAATAGA+AGG + Chr6:18643246-18643265 None:intergenic 30.0%
ATGAATGGACAAACAAATAC+TGG - Chr6:18643975-18643994 MsG0680031344.01.T01:intron 30.0%
ATTTGAACTAAAATGACCGA+TGG + Chr6:18644572-18644591 None:intergenic 30.0%
CAAAATAACTGAACCAGTAA+AGG + Chr6:18643038-18643057 None:intergenic 30.0%
CAAACTTCACTACATTTGAT+GGG + Chr6:18644964-18644983 None:intergenic 30.0%
CTAATCTAAAAGGTCCTATA+GGG + Chr6:18644504-18644523 None:intergenic 30.0%
GAAGATGATCCAAATCTATT+AGG + Chr6:18644698-18644717 None:intergenic 30.0%
GACCAAGAAATACATAACAA+GGG - Chr6:18645401-18645420 MsG0680031344.01.T01:CDS 30.0%
TAATCTAAAAGGTCCTATAG+GGG + Chr6:18644503-18644522 None:intergenic 30.0%
TCGTTGAAATTGTAAACCAT+CGG - Chr6:18644553-18644572 MsG0680031344.01.T01:intron 30.0%
TCTAATCTAAAAGGTCCTAT+AGG + Chr6:18644505-18644524 None:intergenic 30.0%
TTCTTATTCCATTCATCACA+AGG - Chr6:18642631-18642650 MsG0680031344.01.T01:three_prime_UTR 30.0%
TTTGGGGAGAAATATTACAA+AGG - Chr6:18645689-18645708 MsG0680031344.01.T01:intron 30.0%
! CATGAAGAAGAAAACTTTTG+GGG - Chr6:18645673-18645692 MsG0680031344.01.T01:intron 30.0%
!! AATTAATTTTGACGCACTGT+CGG - Chr6:18643492-18643511 MsG0680031344.01.T01:CDS 30.0%
!! AGCCAAAAATTTGACTTGAA+TGG - Chr6:18645873-18645892 MsG0680031344.01.T01:intron 30.0%
!! GTTCTGAAAATTTGGAATCA+AGG + Chr6:18645280-18645299 None:intergenic 30.0%
!!! GAATTGCTAAGATTTTTAGC+TGG - Chr6:18645905-18645924 MsG0680031344.01.T01:five_prime_UTR 30.0%
!!! TACTGGTTCAGTTATTTTGA+CGG - Chr6:18643039-18643058 MsG0680031344.01.T01:CDS 30.0%
AACAATGTCTGACTACTTCT+AGG - Chr6:18644832-18644851 MsG0680031344.01.T01:intron 35.0%
AATACTGGCAGCAGTAAAAT+TGG - Chr6:18643990-18644009 MsG0680031344.01.T01:intron 35.0%
ACACTTACAACTACGAATAG+AGG - Chr6:18645122-18645141 MsG0680031344.01.T01:intron 35.0%
ACTCCCCATTGAATAATCAA+TGG + Chr6:18645351-18645370 None:intergenic 35.0%
AGAAGTAGTCAGACATTGTT+AGG + Chr6:18644832-18644851 None:intergenic 35.0%
AGACAACATATTACTGCATG+TGG - Chr6:18644742-18644761 MsG0680031344.01.T01:CDS 35.0%
AGTCTCTTGTCTATGAACAT+AGG - Chr6:18645646-18645665 MsG0680031344.01.T01:intron 35.0%
ATCAGTGCTTGAAAAAGCTA+AGG - Chr6:18645163-18645182 MsG0680031344.01.T01:intron 35.0%
ATGAAACGTTCATGAAGATC+TGG + Chr6:18643406-18643425 None:intergenic 35.0%
ATGCGCTAACCTAATAGATT+TGG - Chr6:18644686-18644705 MsG0680031344.01.T01:intron 35.0%
ATGCTAAGCCAAGACTAAAA+TGG - Chr6:18643377-18643396 MsG0680031344.01.T01:CDS 35.0%
ATTGAAGCAGTCAATCAACT+TGG - Chr6:18643424-18643443 MsG0680031344.01.T01:CDS 35.0%
CCATTTAAAGAGTCATCTAC+AGG - Chr6:18643715-18643734 MsG0680031344.01.T01:intron 35.0%
CCTGTAGATGACTCTTTAAA+TGG + Chr6:18643718-18643737 None:intergenic 35.0%
CGATTATCAATAGGACATGA+GGG + Chr6:18645532-18645551 None:intergenic 35.0%
GAAAAAGCTAAGGAAACACT+AGG - Chr6:18645173-18645192 MsG0680031344.01.T01:intron 35.0%
GAGTTTCTTAACCAATAGTG+AGG - Chr6:18645367-18645386 MsG0680031344.01.T01:CDS 35.0%
GCAAACTTCACTACATTTGA+TGG + Chr6:18644965-18644984 None:intergenic 35.0%
TCGATTATCAATAGGACATG+AGG + Chr6:18645533-18645552 None:intergenic 35.0%
TGTTAGTTCGATGTCAAGTT+TGG - Chr6:18643125-18643144 MsG0680031344.01.T01:intron 35.0%
TTGAAACTTATGGGAATTCC+TGG - Chr6:18643680-18643699 MsG0680031344.01.T01:intron 35.0%
TTGAATTCCCATGATGACAA+TGG - Chr6:18645837-18645856 MsG0680031344.01.T01:intron 35.0%
! CATAACAAGGGCATGAATTA+TGG - Chr6:18645413-18645432 MsG0680031344.01.T01:CDS 35.0%
! TGCCCTTGTTATGTATTTCT+TGG + Chr6:18645406-18645425 None:intergenic 35.0%
! TTTCTTGATGGCAGAAATAC+AGG - Chr6:18643940-18643959 MsG0680031344.01.T01:intron 35.0%
!! ACAATTGAGTTGAAACCCTA+AGG - Chr6:18642774-18642793 MsG0680031344.01.T01:three_prime_UTR 35.0%
!! AGAAAAAGTGCTGAATCTAG+TGG - Chr6:18645741-18645760 MsG0680031344.01.T01:intron 35.0%
AAAGGAAGATTTAGAGGGTG+AGG - Chr6:18645707-18645726 MsG0680031344.01.T01:intron 40.0%
AACTACGAATAGAGGCTCAA+GGG - Chr6:18645130-18645149 MsG0680031344.01.T01:intron 40.0%
AAGATTACATGAGCAGCTTG+AGG - Chr6:18644389-18644408 MsG0680031344.01.T01:intron 40.0%
AAGATTTAGAGGGTGAGGAA+TGG - Chr6:18645712-18645731 MsG0680031344.01.T01:intron 40.0%
ACCGATTGAACCATCATGTT+CGG + Chr6:18643000-18643019 None:intergenic 40.0%
ACCTAAATGCGTCTTTAAGC+AGG - Chr6:18645092-18645111 MsG0680031344.01.T01:intron 40.0%
ACCTGCTTAAAGACGCATTT+AGG + Chr6:18645096-18645115 None:intergenic 40.0%
AGCAGAATGTCAGAATCAAG+TGG - Chr6:18644172-18644191 MsG0680031344.01.T01:intron 40.0%
CAAGGAACATGCATGCTTTA+AGG - Chr6:18643296-18643315 MsG0680031344.01.T01:CDS 40.0%
CAATCGGTTGAATCTTGAAC+TGG - Chr6:18643012-18643031 MsG0680031344.01.T01:CDS 40.0%
CATCGAACTAACAAGACCTT+TGG + Chr6:18643118-18643137 None:intergenic 40.0%
CCTTCACTTCTTCACACAAT+GGG + Chr6:18645451-18645470 None:intergenic 40.0%
CTACATTACAATCTGCTGGT+TGG + Chr6:18646011-18646030 None:intergenic 40.0%
GCAGTTGAACTATGATCCAA+AGG - Chr6:18643099-18643118 MsG0680031344.01.T01:intron 40.0%
GGAAATGGAAGTTCAGATTC+AGG - Chr6:18643337-18643356 MsG0680031344.01.T01:CDS 40.0%
GGCAGCAGTAAAATTGGTAA+GGG - Chr6:18643996-18644015 MsG0680031344.01.T01:intron 40.0%
GTTCAATAGCGATTTCATCC+CGG - Chr6:18643061-18643080 MsG0680031344.01.T01:CDS 40.0%
TCCTTCACTTCTTCACACAA+TGG + Chr6:18645452-18645471 None:intergenic 40.0%
TGCTTGACATTGACAACACA+TGG - Chr6:18644613-18644632 MsG0680031344.01.T01:intron 40.0%
TGGCAGCAGTAAAATTGGTA+AGG - Chr6:18643995-18644014 MsG0680031344.01.T01:intron 40.0%
! AGGATCAGTAGAAGCATGAA+TGG - Chr6:18643960-18643979 MsG0680031344.01.T01:intron 40.0%
! TCACCTTCTTGTGTTTGTTG+AGG + Chr6:18645326-18645345 None:intergenic 40.0%
! TCTTTGAGAGTCCTCACTAT+TGG + Chr6:18645381-18645400 None:intergenic 40.0%
! TTGACTTGAATGGTTTCAGC+TGG - Chr6:18645883-18645902 MsG0680031344.01.T01:intron 40.0%
! TTTGGAATCAAGGCTTTCAG+TGG + Chr6:18645270-18645289 None:intergenic 40.0%
!! AAGAAGCACCATTGTCATCA+TGG + Chr6:18645848-18645867 None:intergenic 40.0%
!! AATCTTGAACTGGCCTTTAC+TGG - Chr6:18643022-18643041 MsG0680031344.01.T01:CDS 40.0%
!! AGAAGCACCATTGTCATCAT+GGG + Chr6:18645847-18645866 None:intergenic 40.0%
!! ATCTTCAAGAGCACTTCCTT+AGG + Chr6:18642793-18642812 None:intergenic 40.0%
!! CTTGTCACTACTTCTGAAGT+TGG + Chr6:18644154-18644173 None:intergenic 40.0%
!! TCTGGTGTCCATTTTAGTCT+TGG + Chr6:18643388-18643407 None:intergenic 40.0%
!! TCTTCAAGAGCACTTCCTTA+GGG + Chr6:18642792-18642811 None:intergenic 40.0%
!!! GCTTTTTCAAGCACTGATGA+AGG + Chr6:18645161-18645180 None:intergenic 40.0%
!!! GTGTTTTAACCCGAACATGA+TGG - Chr6:18642987-18643006 MsG0680031344.01.T01:three_prime_UTR 40.0%
AAGAGACTTGACGTCCTTTC+TGG + Chr6:18645634-18645653 None:intergenic 45.0%
AGCAACATCAGCAACAAGCA+AGG - Chr6:18643278-18643297 MsG0680031344.01.T01:CDS 45.0%
ATCCTCAATTTGGCCCCTAT+AGG - Chr6:18644487-18644506 MsG0680031344.01.T01:intron 45.0%
CAACTACGAATAGAGGCTCA+AGG - Chr6:18645129-18645148 MsG0680031344.01.T01:intron 45.0%
CCCATTGTGTGAAGAAGTGA+AGG - Chr6:18645448-18645467 MsG0680031344.01.T01:CDS 45.0%
CCCGAACATGATGGTTCAAT+CGG - Chr6:18642996-18643015 MsG0680031344.01.T01:exon 45.0%
CCGATTGAACCATCATGTTC+GGG + Chr6:18642999-18643018 None:intergenic 45.0%
CTGCCTTAAACCGTTAGAAC+CGG + Chr6:18643083-18643102 None:intergenic 45.0%
GAAGCAGTCAATCAACTTGG+AGG - Chr6:18643427-18643446 MsG0680031344.01.T01:CDS 45.0%
GACGGCGCCTCAATTATATT+AGG + Chr6:18645036-18645055 None:intergenic 45.0%
GAGAGAGACCTTGTGATGAA+TGG + Chr6:18642642-18642661 None:intergenic 45.0%
TATGGGACTTGATGCTGCAA+AGG - Chr6:18645214-18645233 MsG0680031344.01.T01:intron 45.0%
TGAGCAGCTTGAGGTATAGA+AGG - Chr6:18644398-18644417 MsG0680031344.01.T01:intron 45.0%
TGCCTTAAACCGTTAGAACC+GGG + Chr6:18643082-18643101 None:intergenic 45.0%
TGGCCTCAACAAACACAAGA+AGG - Chr6:18645320-18645339 MsG0680031344.01.T01:CDS 45.0%
TTAAGGATGCACATGCAAGG+AGG - Chr6:18643313-18643332 MsG0680031344.01.T01:CDS 45.0%
! ATCCCGGTTCTAACGGTTTA+AGG - Chr6:18643077-18643096 MsG0680031344.01.T01:CDS 45.0%
! CGATTTCATCCCGGTTCTAA+CGG - Chr6:18643070-18643089 MsG0680031344.01.T01:CDS 45.0%
! GCTGATGTTGCTGATGATGA+TGG + Chr6:18643270-18643289 None:intergenic 45.0%
! GTCCTTTCTGGTACTTCATC+CGG + Chr6:18645622-18645641 None:intergenic 45.0%
!! GCTTTAAGGATGCACATGCA+AGG - Chr6:18643310-18643329 MsG0680031344.01.T01:CDS 45.0%
!! AAAACTAAAAATTATTTATA+TGG + Chr6:18643785-18643804 None:intergenic 5.0%
!!! ATATAAATAATTTTTAGTTT+TGG - Chr6:18643784-18643803 MsG0680031344.01.T01:intron 5.0%
CACATGCAAGGAGGAGGAAA+TGG - Chr6:18643322-18643341 MsG0680031344.01.T01:CDS 50.0%
GTCCTATAGGGGCCAAATTG+AGG + Chr6:18644492-18644511 None:intergenic 50.0%
! GACCGGATGAAGTACCAGAA+AGG - Chr6:18645617-18645636 MsG0680031344.01.T01:intron 50.0%
AGGATGCACATGCAAGGAGG+AGG - Chr6:18643316-18643335 MsG0680031344.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr6 gene 18642616 18646111 18642616 ID=MsG0680031344.01;Name=MsG0680031344.01
Chr6 mRNA 18642616 18646111 18642616 ID=MsG0680031344.01.T01;Parent=MsG0680031344.01;Name=MsG0680031344.01.T01;_AED=0.49;_eAED=0.49;_QI=231|0.8|1|1|0.8|0.66|6|391|279
Chr6 exon 18642616 18643110 18642616 ID=MsG0680031344.01.T01:exon:14782;Parent=MsG0680031344.01.T01
Chr6 exon 18643212 18643613 18643212 ID=MsG0680031344.01.T01:exon:14781;Parent=MsG0680031344.01.T01
Chr6 exon 18644716 18644773 18644716 ID=MsG0680031344.01.T01:exon:14780;Parent=MsG0680031344.01.T01
Chr6 exon 18644991 18645067 18644991 ID=MsG0680031344.01.T01:exon:14779;Parent=MsG0680031344.01.T01
Chr6 exon 18645270 18645471 18645270 ID=MsG0680031344.01.T01:exon:14778;Parent=MsG0680031344.01.T01
Chr6 exon 18645884 18646111 18645884 ID=MsG0680031344.01.T01:exon:14777;Parent=MsG0680031344.01.T01
Chr6 five_prime_UTR 18645884 18646111 18645884 ID=MsG0680031344.01.T01:five_prime_utr;Parent=MsG0680031344.01.T01
Chr6 five_prime_UTR 18645469 18645471 18645469 ID=MsG0680031344.01.T01:five_prime_utr;Parent=MsG0680031344.01.T01
Chr6 CDS 18645270 18645468 18645270 ID=MsG0680031344.01.T01:cds;Parent=MsG0680031344.01.T01
Chr6 CDS 18644991 18645067 18644991 ID=MsG0680031344.01.T01:cds;Parent=MsG0680031344.01.T01
Chr6 CDS 18644716 18644773 18644716 ID=MsG0680031344.01.T01:cds;Parent=MsG0680031344.01.T01
Chr6 CDS 18643212 18643613 18643212 ID=MsG0680031344.01.T01:cds;Parent=MsG0680031344.01.T01
Chr6 CDS 18643007 18643110 18643007 ID=MsG0680031344.01.T01:cds;Parent=MsG0680031344.01.T01
Chr6 three_prime_UTR 18642616 18643006 18642616 ID=MsG0680031344.01.T01:three_prime_utr;Parent=MsG0680031344.01.T01
Gene Sequence

>MsG0680031344.01.T01

ATGTACTACCATCATCATCAGCAACATCAGCAACAAGCAAGGAACATGCATGCTTTAAGGATGCACATGCAAGGAGGAGGAAATGGAAGTTCAGATTCAGGACTTGTTCTTTCAACTGATGCTAAGCCAAGACTAAAATGGACACCAGATCTTCATGAACGTTTCATTGAAGCAGTCAATCAACTTGGAGGAGCAGATAAAGCTACACCAAAAACAGTTTTGAAACTTATGGGAATTCCTGGACTTACATTATACCATTTAAAGAGTCATCTACAGAAATACAGGATCAGTAGAAGCATGAATGGACAAACAAATACTGGCAGCAGTAAAATTGGTACAACGACACTTACAACTACGAATAGAGGCTCAAGGGAAGTACCTTCATCAGTGCTTGAAAAAGCTAAGGAAACACTAGGAAGACAAAATTTAGGAGCTATGGGACTTGATGCTGCAAAGGTTCAACTATCTGAATTAGCATCAAGAGTATCCACTGAAAGCCTTGATTCCAAATTTTCAGAACTAAAAGAAATGAATGTACTTTGGCCTCAACAAACACAAGAAGGTGAAACCATTGATTATTCAATGGGGAGTTTCTTAACCAATAGTGAGGACTCTCAAAGAGACCAAGAAATACATAACAAGGGCATGAATTATGGAGCTTATAATGGCCCATTGTGTGAAGAAGTGAAGGAGAATATGATGTTTCTTCCCTCATCAAATGATAAAGTACTAAAGGGACCGGATGAAGTACCAGAAAGGACGTCAAGTCTCTTGTCTATGAACATAGGAGTTCATGAAGAAGAAAACTTTTGGGGAGAAATATTACAAAGGAAGATTTAG

Protein sequence

>MsG0680031344.01.T01

MYYHHHQQHQQQARNMHALRMHMQGGGNGSSDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQKYRISRSMNGQTNTGSSKIGTTTLTTTNRGSREVPSSVLEKAKETLGRQNLGAMGLDAAKVQLSELASRVSTESLDSKFSELKEMNVLWPQQTQEGETIDYSMGSFLTNSEDSQRDQEIHNKGMNYGAYNGPLCEEVKENMMFLPSSNDKVLKGPDEVPERTSSLLSMNIGVHEEENFWGEILQRKI*