Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018200.01.T01 | RHN58347.1 | 86.589 | 343 | 44 | 1 | 1 | 341 | 50 | 392 | 0 | 594 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018200.01.T01 | P49243 | 60.058 | 343 | 84 | 3 | 1 | 340 | 111 | 403 | 2.96E-143 | 414 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018200.01.T01 | A0A396I681 | 86.589 | 343 | 44 | 1 | 1 | 341 | 50 | 392 | 0.0 | 594 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047899.01 | MsG0480018200.01 | 0.814617 | 1.406215e-51 | 9.481432e-49 |
| MsG0080048001.01 | MsG0480018200.01 | 0.820535 | 6.514712e-53 | 5.168693e-50 |
| MsG0180000114.01 | MsG0480018200.01 | 0.804702 | 1.902820e-49 | 9.878056e-47 |
| MsG0180000292.01 | MsG0480018200.01 | 0.805507 | 1.291143e-49 | 6.842676e-47 |
| MsG0180000404.01 | MsG0480018200.01 | 0.835385 | 1.730920e-56 | 2.113359e-53 |
| MsG0180000782.01 | MsG0480018200.01 | 0.810797 | 9.641232e-51 | 5.867596e-48 |
| MsG0180000784.01 | MsG0480018200.01 | 0.832990 | 6.896850e-56 | 7.837201e-53 |
| MsG0180000785.01 | MsG0480018200.01 | 0.833995 | 3.870317e-56 | 4.532547e-53 |
| MsG0180000814.01 | MsG0480018200.01 | 0.803447 | 3.470530e-49 | 1.744438e-46 |
| MsG0180001100.01 | MsG0480018200.01 | 0.806882 | 6.628569e-50 | 3.639065e-47 |
| MsG0180002399.01 | MsG0480018200.01 | 0.816407 | 5.619731e-52 | 3.978584e-49 |
| MsG0180002929.01 | MsG0480018200.01 | 0.803625 | 3.187515e-49 | 1.609521e-46 |
| MsG0180003353.01 | MsG0480018200.01 | 0.811669 | 6.235779e-51 | 3.883324e-48 |
| MsG0180003741.01 | MsG0480018200.01 | 0.879075 | 1.674811e-69 | 8.956826e-66 |
| MsG0180004246.01 | MsG0480018200.01 | 0.806792 | 6.926971e-50 | 3.794002e-47 |
| MsG0180004497.01 | MsG0480018200.01 | 0.800227 | 1.591364e-48 | 7.370143e-46 |
| MsG0180004541.01 | MsG0480018200.01 | 0.818427 | 1.971914e-52 | 1.475676e-49 |
| MsG0180005113.01 | MsG0480018200.01 | 0.841859 | 3.680620e-58 | 5.479645e-55 |
| MsG0180005153.01 | MsG0480018200.01 | 0.838074 | 3.568021e-57 | 4.726112e-54 |
| MsG0180005807.01 | MsG0480018200.01 | 0.834065 | 3.717225e-56 | 4.362097e-53 |
| MsG0280010569.01 | MsG0480018200.01 | 0.819570 | 1.083637e-52 | 8.369864e-50 |
| MsG0280010611.01 | MsG0480018200.01 | 0.801989 | 6.940626e-49 | 3.361087e-46 |
| MsG0380015885.01 | MsG0480018200.01 | 0.811752 | 5.982844e-51 | 3.734238e-48 |
| MsG0380015896.01 | MsG0480018200.01 | 0.805852 | 1.092616e-49 | 5.842766e-47 |
| MsG0380016192.01 | MsG0480018200.01 | 0.808097 | 3.660754e-50 | 2.074480e-47 |
| MsG0380016864.01 | MsG0480018200.01 | 0.841843 | 3.715423e-58 | 5.528723e-55 |
| MsG0380017087.01 | MsG0480018200.01 | 0.829591 | 4.724006e-55 | 4.856776e-52 |
| MsG0380017423.01 | MsG0480018200.01 | 0.810184 | 1.307576e-50 | 7.829154e-48 |
| MsG0480018200.01 | MsG0480018584.01 | 0.813105 | 3.028208e-51 | 1.959585e-48 |
| MsG0480018200.01 | MsG0480019007.01 | 0.803159 | 3.981221e-49 | 1.986391e-46 |
| MsG0480018200.01 | MsG0480019340.01 | 0.802309 | 5.964532e-49 | 2.912279e-46 |
| MsG0480018200.01 | MsG0480020315.01 | 0.856521 | 3.041995e-62 | 7.281751e-59 |
| MsG0480018200.01 | MsG0480020517.01 | 0.817397 | 3.369088e-52 | 2.450822e-49 |
| MsG0480018200.01 | MsG0480020783.01 | 0.806424 | 8.281844e-50 | 4.493536e-47 |
| MsG0480018200.01 | MsG0480021060.01 | 0.825717 | 4.025120e-54 | 3.698152e-51 |
| MsG0480018200.01 | MsG0480021814.01 | 0.824552 | 7.586920e-54 | 6.742712e-51 |
| MsG0480018200.01 | MsG0480021894.01 | 0.814217 | 1.723753e-51 | 1.149672e-48 |
| MsG0480018200.01 | MsG0480022355.01 | 0.847073 | 1.455933e-59 | 2.557929e-56 |
| MsG0480018200.01 | MsG0480022537.01 | 0.802134 | 6.478325e-49 | 3.148957e-46 |
| MsG0480018200.01 | MsG0480024022.01 | 0.810490 | 1.123133e-50 | 6.779437e-48 |
| MsG0480018200.01 | MsG0580024443.01 | 0.836947 | 6.940315e-57 | 8.881583e-54 |
| MsG0480018200.01 | MsG0580024966.01 | 0.816381 | 5.695277e-52 | 4.029284e-49 |
| MsG0480018200.01 | MsG0580025449.01 | 0.803678 | 3.108790e-49 | 1.571844e-46 |
| MsG0480018200.01 | MsG0580025607.01 | 0.840297 | 9.466461e-58 | 1.342490e-54 |
| MsG0480018200.01 | MsG0580025668.01 | 0.852268 | 5.162272e-61 | 1.072909e-57 |
| MsG0480018200.01 | MsG0580025828.01 | 0.820417 | 6.935934e-53 | 5.485170e-50 |
| MsG0480018200.01 | MsG0580026179.01 | 0.828880 | 7.030342e-55 | 7.077382e-52 |
| MsG0480018200.01 | MsG0580027655.01 | 0.836080 | 1.153758e-56 | 1.438500e-53 |
| MsG0480018200.01 | MsG0580027726.01 | 0.808367 | 3.207167e-50 | 1.830464e-47 |
| MsG0480018200.01 | MsG0580027763.01 | 0.829838 | 4.114784e-55 | 4.261573e-52 |
| MsG0480018200.01 | MsG0580027826.01 | 0.810812 | 9.570534e-51 | 5.826797e-48 |
| MsG0480018200.01 | MsG0580027925.01 | 0.806634 | 7.479465e-50 | 4.079765e-47 |
| MsG0480018200.01 | MsG0580028960.01 | 0.835532 | 1.588445e-56 | 1.947861e-53 |
| MsG0480018200.01 | MsG0580029310.01 | 0.859404 | 4.233417e-63 | 1.116908e-59 |
| MsG0480018200.01 | MsG0580029529.01 | 0.828495 | 8.708372e-55 | 8.670575e-52 |
| MsG0480018200.01 | MsG0580029736.01 | 0.844905 | 5.657958e-59 | 9.269329e-56 |
| MsG0480018200.01 | MsG0680030328.01 | 0.820605 | 6.280282e-53 | 4.991962e-50 |
| MsG0480018200.01 | MsG0680030329.01 | 0.830918 | 2.240622e-55 | 2.394359e-52 |
| MsG0480018200.01 | MsG0680030784.01 | 0.830072 | 3.608328e-55 | 3.761368e-52 |
| MsG0480018200.01 | MsG0680030895.01 | 0.811145 | 8.104214e-51 | 4.977920e-48 |
| MsG0480018200.01 | MsG0680030905.01 | 0.804519 | 2.077462e-49 | 1.073341e-46 |
| MsG0480018200.01 | MsG0680030908.01 | 0.835584 | 1.541313e-56 | 1.892963e-53 |
| MsG0480018200.01 | MsG0680031621.01 | 0.822249 | 2.620890e-53 | 2.181871e-50 |
| MsG0480018200.01 | MsG0680031959.01 | 0.851778 | 7.111562e-61 | 1.455076e-57 |
| MsG0480018200.01 | MsG0680034235.01 | 0.803613 | 3.206643e-49 | 1.618687e-46 |
| MsG0480018200.01 | MsG0680034750.01 | 0.807949 | 3.937616e-50 | 2.222556e-47 |
| MsG0480018200.01 | MsG0680034767.01 | 0.824464 | 7.959360e-54 | 7.054914e-51 |
| MsG0480018200.01 | MsG0780035992.01 | 0.812298 | 4.547644e-51 | 2.880690e-48 |
| MsG0480018200.01 | MsG0780036243.01 | 0.832480 | 9.230218e-56 | 1.032978e-52 |
| MsG0480018200.01 | MsG0780036307.01 | 0.810898 | 9.167821e-51 | 5.594827e-48 |
| MsG0480018200.01 | MsG0780036593.01 | 0.821183 | 4.622713e-53 | 3.734427e-50 |
| MsG0480018200.01 | MsG0780036596.01 | 0.819689 | 1.017681e-52 | 7.886309e-50 |
| MsG0480018200.01 | MsG0780036659.01 | 0.802969 | 4.359349e-49 | 2.164440e-46 |
| MsG0480018200.01 | MsG0780036979.01 | 0.806508 | 7.951454e-50 | 4.323536e-47 |
| MsG0480018200.01 | MsG0780037341.01 | 0.865467 | 5.782250e-65 | 1.883145e-61 |
| MsG0480018200.01 | MsG0780037395.01 | 0.857921 | 1.174217e-62 | 2.945618e-59 |
| MsG0480018200.01 | MsG0780038846.01 | 0.830023 | 3.708028e-55 | 3.860012e-52 |
| MsG0480018200.01 | MsG0780038847.01 | 0.820753 | 5.806822e-53 | 4.634960e-50 |
| MsG0480018200.01 | MsG0780038948.01 | 0.827346 | 1.646120e-54 | 1.585120e-51 |
| MsG0480018200.01 | MsG0780040286.01 | 0.828044 | 1.119067e-54 | 1.099659e-51 |
| MsG0480018200.01 | MsG0780040287.01 | 0.841333 | 5.062870e-58 | 7.414341e-55 |
| MsG0480018200.01 | MsG0780040430.01 | 0.832198 | 1.083890e-55 | 1.202854e-52 |
| MsG0480018200.01 | MsG0780040431.01 | 0.822963 | 1.787505e-53 | 1.518650e-50 |
| MsG0480018200.01 | MsG0780040846.01 | 0.801354 | 9.368296e-49 | 4.464536e-46 |
| MsG0480018200.01 | MsG0780040888.01 | 0.811070 | 8.414953e-51 | 5.158613e-48 |
| MsG0480018200.01 | MsG0780041259.01 | 0.869072 | 4.071880e-66 | 1.507655e-62 |
| MsG0480018200.01 | MsG0780041482.01 | 0.817009 | 4.117979e-52 | 2.964034e-49 |
| MsG0480018200.01 | MsG0780041634.01 | 0.812621 | 3.866020e-51 | 2.469987e-48 |
| MsG0480018200.01 | MsG0780041698.01 | 0.830795 | 2.400895e-55 | 2.556279e-52 |
| MsG0480018200.01 | MsG0780041699.01 | 0.813028 | 3.149573e-51 | 2.033972e-48 |
| MsG0480018200.01 | MsG0880041834.01 | 0.874107 | 8.745964e-68 | 3.887812e-64 |
| MsG0480018200.01 | MsG0880042958.01 | 0.826996 | 1.995817e-54 | 1.902060e-51 |
| MsG0480018200.01 | MsG0880042959.01 | 0.807594 | 4.683480e-50 | 2.619070e-47 |
| MsG0480018200.01 | MsG0880043157.01 | 0.812474 | 4.164435e-51 | 2.650450e-48 |
| MsG0480018200.01 | MsG0880043755.01 | 0.800724 | 1.259951e-48 | 5.909324e-46 |
| MsG0480018200.01 | MsG0880044704.01 | 0.860406 | 2.112302e-63 | 5.767327e-60 |
| MsG0480018200.01 | MsG0880045558.01 | 0.802388 | 5.746092e-49 | 2.811275e-46 |
| MsG0480018200.01 | MsG0880045668.01 | 0.816640 | 4.982459e-52 | 3.549994e-49 |
| MsG0480018200.01 | MsG0880047045.01 | 0.800185 | 1.622831e-48 | 7.507879e-46 |
| MsG0480018200.01 | MsG0880047422.01 | -0.808370 | 3.202270e-50 | 1.827801e-47 |
| MsG0480018200.01 | MsG0880047538.01 | 0.838502 | 2.767773e-57 | 3.714336e-54 |
| MsG0480018200.01 | MsG0880047696.01 | 0.804967 | 1.675420e-49 | 8.757495e-47 |
| MsG0280006592.01 | MsG0480018200.01 | 0.801290 | 9.654245e-49 | 4.593408e-46 |
| MsG0280006937.01 | MsG0480018200.01 | 0.824945 | 6.131305e-54 | 5.510922e-51 |
| MsG0280006966.01 | MsG0480018200.01 | 0.804604 | 1.994696e-49 | 1.032879e-46 |
| MsG0280006967.01 | MsG0480018200.01 | 0.802979 | 4.338301e-49 | 2.154498e-46 |
| MsG0280007075.01 | MsG0480018200.01 | 0.811014 | 8.651380e-51 | 5.296272e-48 |
| MsG0280007432.01 | MsG0480018200.01 | 0.830510 | 2.820583e-55 | 2.977763e-52 |
| MsG0280007575.01 | MsG0480018200.01 | 0.804801 | 1.814697e-49 | 9.445048e-47 |
| MsG0280007750.01 | MsG0480018200.01 | 0.800978 | 1.118126e-48 | 5.278558e-46 |
| MsG0280007955.01 | MsG0480018200.01 | 0.802656 | 5.059209e-49 | 2.491970e-46 |
| MsG0280007976.01 | MsG0480018200.01 | 0.804106 | 2.533470e-49 | 1.295166e-46 |
| MsG0280008390.01 | MsG0480018200.01 | 0.835818 | 1.344605e-56 | 1.663036e-53 |
| MsG0280008392.01 | MsG0480018200.01 | 0.811658 | 6.269903e-51 | 3.903505e-48 |
| MsG0280008395.01 | MsG0480018200.01 | 0.824281 | 8.789418e-54 | 7.749818e-51 |
| MsG0280008418.01 | MsG0480018200.01 | 0.815263 | 1.011291e-51 | 6.938679e-49 |
| MsG0280010503.01 | MsG0480018200.01 | 0.809789 | 1.590184e-50 | 9.424316e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018200.01.T01 | MTR_4g007180 | 79.765 | 341 | 21 | 1 | 1 | 341 | 84 | 376 | 0.0 | 535 |
| MsG0480018200.01.T01 | MTR_2g105100 | 62.170 | 341 | 81 | 1 | 1 | 341 | 104 | 396 | 4.78e-148 | 423 |
| MsG0480018200.01.T01 | MTR_5g009640 | 53.333 | 255 | 52 | 2 | 87 | 341 | 168 | 355 | 3.19e-81 | 251 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018200.01.T01 | AT1G62640 | 60.058 | 343 | 84 | 3 | 1 | 340 | 111 | 403 | 3.01e-144 | 414 |
| MsG0480018200.01.T01 | AT1G62640 | 60.058 | 343 | 84 | 3 | 1 | 340 | 111 | 403 | 3.01e-144 | 414 |
Find 66 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAATATGAATACTTCTT+TGG | 0.249673 | 4:+1505804 | None:intergenic |
| CCACTACATCAATAATTCTT+TGG | 0.266849 | 4:+1505493 | None:intergenic |
| ATTATTGCTGCTTCTGGCTT+TGG | 0.274041 | 4:-1505342 | MsG0480018200.01.T01:CDS |
| TAATGCATCAGACTCAATTA+AGG | 0.282247 | 4:-1505844 | MsG0480018200.01.T01:CDS |
| AGTTAGAAGTGGAAAGATTA+AGG | 0.293816 | 4:-1505373 | MsG0480018200.01.T01:CDS |
| GGACAAATTATTGCTGCTTC+TGG | 0.294045 | 4:-1505348 | MsG0480018200.01.T01:CDS |
| GCTTTGGTGCTGGTCTTACT+TGG | 0.297418 | 4:-1505326 | MsG0480018200.01.T01:CDS |
| TGCTTGATGTTTATGGTTGC+AGG | 0.299822 | 4:-1507064 | None:intergenic |
| TTTCAAAATGTTCTTGTAAT+CGG | 0.300523 | 4:-1506466 | MsG0480018200.01.T01:CDS |
| GCATGTAGTGGATTTATCTT+TGG | 0.313034 | 4:-1506609 | MsG0480018200.01.T01:CDS |
| TATCAGCTGCTAGTCACATT+AGG | 0.325626 | 4:-1506581 | MsG0480018200.01.T01:CDS |
| ATCAGCTGCTAGTCACATTA+GGG | 0.332459 | 4:-1506580 | MsG0480018200.01.T01:CDS |
| AGAAGTTCATGTATTCTGTT+TGG | 0.348221 | 4:-1506406 | MsG0480018200.01.T01:CDS |
| ATATCAAATGTGGCTGATTA+TGG | 0.349357 | 4:-1505438 | MsG0480018200.01.T01:CDS |
| GCTGCTTCTGGCTTTGGTGC+TGG | 0.385323 | 4:-1505336 | MsG0480018200.01.T01:CDS |
| CTTTGGTGCTGGTCTTACTT+GGG | 0.392366 | 4:-1505325 | MsG0480018200.01.T01:CDS |
| GGGGATAAGGTCTTACTTTG+AGG | 0.412976 | 4:-1505284 | MsG0480018200.01.T01:exon |
| TACCTACATCCAGCATTGAT+TGG | 0.413421 | 4:-1505695 | MsG0480018200.01.T01:CDS |
| GCCTACATGAAGTGAAACTA+TGG | 0.413486 | 4:+1505901 | None:intergenic |
| GCTGTAATGTTATAAGTTGC+TGG | 0.417463 | 4:+1506633 | None:intergenic |
| TGATTGGTTACTTCTCCATC+AGG | 0.428078 | 4:-1505679 | MsG0480018200.01.T01:intron |
| CTCTTTCGAGATATATCGAT+TGG | 0.434773 | 4:-1506435 | MsG0480018200.01.T01:CDS |
| TTTCTAATCGAAGGCGTGTC+CGG | 0.445871 | 4:-1506069 | MsG0480018200.01.T01:CDS |
| GGGATAAGGTCTTACTTTGA+GGG | 0.460615 | 4:-1505283 | MsG0480018200.01.T01:exon |
| GAATATGAATACTTCTTTGG+AGG | 0.473078 | 4:+1505807 | None:intergenic |
| GTATATCACTTGAAAACATA+AGG | 0.488538 | 4:+1505234 | None:intergenic |
| TGCTGCCTCTACTGATAAAG+TGG | 0.490848 | 4:+1507027 | None:intergenic |
| AATGCATCAGACTCAATTAA+GGG | 0.492850 | 4:-1505843 | MsG0480018200.01.T01:CDS |
| TAGATGAACACACCAAGATT+AGG | 0.495759 | 4:+1506960 | None:intergenic |
| AGTGCTGACTCAATTGACTT+TGG | 0.500820 | 4:+1505732 | None:intergenic |
| AGAAGTGGAAAGATTAAGGA+AGG | 0.501824 | 4:-1505369 | MsG0480018200.01.T01:CDS |
| CCAAAGAATTATTGATGTAG+TGG | 0.502244 | 4:-1505493 | MsG0480018200.01.T01:CDS |
| TTTCAGATTTCAAAACAGCT+TGG | 0.504851 | 4:-1506669 | MsG0480018200.01.T01:intron |
| AATTGAGTCAGCACTTCAAA+AGG | 0.505835 | 4:-1505724 | MsG0480018200.01.T01:CDS |
| AATGCAGCATATAAAGAAGA+AGG | 0.507598 | 4:-1505873 | MsG0480018200.01.T01:CDS |
| TTTGGTGCTGGTCTTACTTG+GGG | 0.514017 | 4:-1505324 | MsG0480018200.01.T01:CDS |
| AGACTCAATTAAGGGTGAGT+TGG | 0.516652 | 4:-1505835 | MsG0480018200.01.T01:CDS |
| GAGAAGTAACCAATCAATGC+TGG | 0.517393 | 4:+1505686 | None:intergenic |
| TATTCATGCATACATATGAA+TGG | 0.524043 | 4:-1505789 | MsG0480018200.01.T01:CDS |
| AAGTGCAGCTTCCATTCCAT+TGG | 0.525636 | 4:-1505409 | MsG0480018200.01.T01:CDS |
| AACATTACAGCTGCATGTAG+TGG | 0.532984 | 4:-1506621 | MsG0480018200.01.T01:CDS |
| ATTCTGTTTGGAGATGCTGC+TGG | 0.537982 | 4:-1506394 | MsG0480018200.01.T01:CDS |
| GAGATGGCAAAGGTTGATCC+AGG | 0.538042 | 4:-1506992 | MsG0480018200.01.T01:CDS |
| TGCTGGTGCTGTTCTAGTAC+AGG | 0.539004 | 4:-1506377 | MsG0480018200.01.T01:intron |
| ATGTCGATACTGCAAAGGTA+AGG | 0.544842 | 4:+1506091 | None:intergenic |
| GAGTCAGCACTTCAAAAGGC+TGG | 0.548884 | 4:-1505720 | MsG0480018200.01.T01:CDS |
| TTAGATGAATCAGTTAGAAG+TGG | 0.549460 | 4:-1505384 | MsG0480018200.01.T01:CDS |
| ACTGATTCATCTAAAGCCAA+TGG | 0.554412 | 4:+1505393 | None:intergenic |
| CAGAATACATGAACTTCTGT+TGG | 0.557274 | 4:+1506411 | None:intergenic |
| ACCATAGTTTCACTTCATGT+AGG | 0.560190 | 4:-1505902 | MsG0480018200.01.T01:CDS |
| TTCATCTAAAGCCAATGGAA+TGG | 0.563272 | 4:+1505398 | None:intergenic |
| CTTGACCACTTTATCAGTAG+AGG | 0.564880 | 4:-1507032 | MsG0480018200.01.T01:CDS |
| AACGTAATCACATATATCAC+CGG | 0.575306 | 4:+1506050 | None:intergenic |
| AGGTGATGTTGACCTAATCT+TGG | 0.581165 | 4:-1506972 | MsG0480018200.01.T01:CDS |
| ATGCAGCATATAAAGAAGAA+GGG | 0.586575 | 4:-1505872 | MsG0480018200.01.T01:CDS |
| CTTTATCAGTAGAGGCAGCA+AGG | 0.593587 | 4:-1507024 | MsG0480018200.01.T01:CDS |
| AAGATTAGGTCAACATCACC+TGG | 0.602574 | 4:+1506974 | None:intergenic |
| TGCAGCATATAAAGAAGAAG+GGG | 0.606045 | 4:-1505871 | MsG0480018200.01.T01:CDS |
| GTATCGACATTTCTAATCGA+AGG | 0.607390 | 4:-1506078 | MsG0480018200.01.T01:CDS |
| AACCAATCAATGCTGGATGT+AGG | 0.609994 | 4:+1505693 | None:intergenic |
| AGCAAGGAAAGCTCTTGAGA+TGG | 0.614431 | 4:-1507008 | MsG0480018200.01.T01:CDS |
| TAGAAATGTCGATACTGCAA+AGG | 0.615197 | 4:+1506086 | None:intergenic |
| GATTTGAATAGTGATGGTGA+TGG | 0.616422 | 4:-1506129 | MsG0480018200.01.T01:CDS |
| TCAGCTGCTAGTCACATTAG+GGG | 0.630404 | 4:-1506579 | MsG0480018200.01.T01:intron |
| GAAAGCTCTTGAGATGGCAA+AGG | 0.633878 | 4:-1507002 | MsG0480018200.01.T01:CDS |
| ATTGCAGGCGTGCAACTACG+AGG | 0.723991 | 4:-1506172 | MsG0480018200.01.T01:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTATTTACAACATTT+AGG | + | Chr4:1505726-1505745 | None:intergenic | 10.0% |
| !! | ATATAGTAATATATTTGATT+AGG | - | Chr4:1506659-1506678 | MsG0480018200.01.T01:CDS | 10.0% |
| !! | TAATCAAATATATTACTATA+TGG | + | Chr4:1506660-1506679 | None:intergenic | 10.0% |
| !! | TATAGTAATATATTTGATTA+GGG | - | Chr4:1506660-1506679 | MsG0480018200.01.T01:CDS | 10.0% |
| !!! | CTTTTTACTTATATAAAAAT+TGG | + | Chr4:1505386-1505405 | None:intergenic | 10.0% |
| !!! | TTAATCATAAAAAAAAGTTT+TGG | + | Chr4:1506620-1506639 | None:intergenic | 10.0% |
| !!! | AATTTAGGGAAATTTATTTT+TGG | + | Chr4:1506590-1506609 | None:intergenic | 15.0% |
| !!! | TATTTTCATTGAGATTTAAA+TGG | - | Chr4:1505991-1506010 | MsG0480018200.01.T01:intron | 15.0% |
| !! | ATATATTTGATTAGGGAAAA+AGG | - | Chr4:1506667-1506686 | MsG0480018200.01.T01:intron | 20.0% |
| !! | TAAATACTGAATTATTAGCA+TGG | + | Chr4:1506702-1506721 | None:intergenic | 20.0% |
| !! | TTTCAAAATGTTCTTGTAAT+CGG | - | Chr4:1505771-1505790 | MsG0480018200.01.T01:CDS | 20.0% |
| !!! | AAGTAAAAAGTACATATATC+TGG | - | Chr4:1505396-1505415 | MsG0480018200.01.T01:CDS | 20.0% |
| !!! | AGTTACTTTTTGTTGAATTA+AGG | - | Chr4:1505689-1505708 | MsG0480018200.01.T01:CDS | 20.0% |
| !!! | ATTTACTTGTTGATAAATGT+AGG | - | Chr4:1506717-1506736 | MsG0480018200.01.T01:intron | 20.0% |
| !!! | GGTTTTTTATATAAGCAAAA+AGG | + | Chr4:1505431-1505450 | None:intergenic | 20.0% |
| !!! | TTTTGCTTATATAAAAAACC+AGG | - | Chr4:1505431-1505450 | MsG0480018200.01.T01:CDS | 20.0% |
| !!! | TTTTTTCATTTTATGAATGC+AGG | - | Chr4:1505741-1505760 | MsG0480018200.01.T01:CDS | 20.0% |
| ! | AGAAAAAGTGATATCAAATG+TGG | - | Chr4:1506789-1506808 | MsG0480018200.01.T01:intron | 25.0% |
| ! | CATGAATATGAATACTTCTT+TGG | + | Chr4:1506436-1506455 | None:intergenic | 25.0% |
| ! | GTATATCACTTGAAAACATA+AGG | + | Chr4:1507006-1507025 | None:intergenic | 25.0% |
| ! | GTTATATATGTTTACATTGC+AGG | - | Chr4:1506050-1506069 | MsG0480018200.01.T01:CDS | 25.0% |
| ! | TATGATGAAAACCATAAACA+TGG | + | Chr4:1505934-1505953 | None:intergenic | 25.0% |
| ! | TATTCATGCATACATATGAA+TGG | - | Chr4:1506448-1506467 | MsG0480018200.01.T01:CDS | 25.0% |
| !! | GGTTTTCATCATAGTAAATA+GGG | - | Chr4:1505941-1505960 | MsG0480018200.01.T01:CDS | 25.0% |
| !! | TGGTTTTCATCATAGTAAAT+AGG | - | Chr4:1505940-1505959 | MsG0480018200.01.T01:CDS | 25.0% |
| !!! | ACATTTGATATCACTTTTTC+TGG | + | Chr4:1506790-1506809 | None:intergenic | 25.0% |
| !!! | AGTTTTGATTTGAATAGTGA+TGG | - | Chr4:1506102-1506121 | MsG0480018200.01.T01:CDS | 25.0% |
| !!! | AGTTTTGGTCACTTAAATTT+AGG | + | Chr4:1506605-1506624 | None:intergenic | 25.0% |
| !!! | CTATATGGTATATCACTTTT+AGG | + | Chr4:1506645-1506664 | None:intergenic | 25.0% |
| !!! | GTTTTGGTCACTTAAATTTA+GGG | + | Chr4:1506604-1506623 | None:intergenic | 25.0% |
| AACGTAATCACATATATCAC+CGG | + | Chr4:1506190-1506209 | None:intergenic | 30.0% | |
| AATGCAGCATATAAAGAAGA+AGG | - | Chr4:1506364-1506383 | MsG0480018200.01.T01:intron | 30.0% | |
| AATGCATCAGACTCAATTAA+GGG | - | Chr4:1506394-1506413 | MsG0480018200.01.T01:CDS | 30.0% | |
| AGAAGTTCATGTATTCTGTT+TGG | - | Chr4:1505831-1505850 | MsG0480018200.01.T01:CDS | 30.0% | |
| AGTTAGAAGTGGAAAGATTA+AGG | - | Chr4:1506864-1506883 | MsG0480018200.01.T01:intron | 30.0% | |
| ATATCAAATGTGGCTGATTA+TGG | - | Chr4:1506799-1506818 | MsG0480018200.01.T01:intron | 30.0% | |
| ATGCAGCATATAAAGAAGAA+GGG | - | Chr4:1506365-1506384 | MsG0480018200.01.T01:intron | 30.0% | |
| ATTTGATTAGGGAAAAAGGT+TGG | - | Chr4:1506671-1506690 | MsG0480018200.01.T01:intron | 30.0% | |
| CCAAAGAATTATTGATGTAG+TGG | - | Chr4:1506744-1506763 | MsG0480018200.01.T01:intron | 30.0% | |
| CCACTACATCAATAATTCTT+TGG | + | Chr4:1506747-1506766 | None:intergenic | 30.0% | |
| GAATATGAATACTTCTTTGG+AGG | + | Chr4:1506433-1506452 | None:intergenic | 30.0% | |
| TAATGCATCAGACTCAATTA+AGG | - | Chr4:1506393-1506412 | MsG0480018200.01.T01:CDS | 30.0% | |
| TTAGATGAATCAGTTAGAAG+TGG | - | Chr4:1506853-1506872 | MsG0480018200.01.T01:intron | 30.0% | |
| TTTCAGATTTCAAAACAGCT+TGG | - | Chr4:1505568-1505587 | MsG0480018200.01.T01:intron | 30.0% | |
| ! | ATATAAGCAAAAAGGTGCAT+TGG | + | Chr4:1505423-1505442 | None:intergenic | 30.0% |
| ! | TCTACTTCAGATGATCTTTT+TGG | - | Chr4:1505296-1505315 | MsG0480018200.01.T01:exon | 30.0% |
| !!! | TTGATATCACTTTTTCTGGA+GGG | + | Chr4:1506786-1506805 | None:intergenic | 30.0% |
| !!! | TTTGATATCACTTTTTCTGG+AGG | + | Chr4:1506787-1506806 | None:intergenic | 30.0% |
| AATTGAGTCAGCACTTCAAA+AGG | - | Chr4:1506513-1506532 | MsG0480018200.01.T01:intron | 35.0% | |
| ACCATAGTTTCACTTCATGT+AGG | - | Chr4:1506335-1506354 | MsG0480018200.01.T01:intron | 35.0% | |
| AGAAGTGGAAAGATTAAGGA+AGG | - | Chr4:1506868-1506887 | MsG0480018200.01.T01:intron | 35.0% | |
| CAGAATACATGAACTTCTGT+TGG | + | Chr4:1505829-1505848 | None:intergenic | 35.0% | |
| CTATAACCAATACTAACCTG+AGG | + | Chr4:1505329-1505348 | None:intergenic | 35.0% | |
| CTCTTTCGAGATATATCGAT+TGG | - | Chr4:1505802-1505821 | MsG0480018200.01.T01:CDS | 35.0% | |
| GCTGTAATGTTATAAGTTGC+TGG | + | Chr4:1505607-1505626 | None:intergenic | 35.0% | |
| GGCTAACTATACCATGTTTA+TGG | - | Chr4:1505920-1505939 | MsG0480018200.01.T01:CDS | 35.0% | |
| TAGAAATGTCGATACTGCAA+AGG | + | Chr4:1506154-1506173 | None:intergenic | 35.0% | |
| TAGATGAACACACCAAGATT+AGG | + | Chr4:1505280-1505299 | None:intergenic | 35.0% | |
| TGCAGCATATAAAGAAGAAG+GGG | - | Chr4:1506366-1506385 | MsG0480018200.01.T01:intron | 35.0% | |
| ! | ACTGATTCATCTAAAGCCAA+TGG | + | Chr4:1506847-1506866 | None:intergenic | 35.0% |
| ! | GATTTGAATAGTGATGGTGA+TGG | - | Chr4:1506108-1506127 | MsG0480018200.01.T01:CDS | 35.0% |
| ! | GTATCGACATTTCTAATCGA+AGG | - | Chr4:1506159-1506178 | MsG0480018200.01.T01:CDS | 35.0% |
| ! | TTCATCTAAAGCCAATGGAA+TGG | + | Chr4:1506842-1506861 | None:intergenic | 35.0% |
| !! | AAGCACTGACACATATACAT+TGG | + | Chr4:1506267-1506286 | None:intergenic | 35.0% |
| !! | ACTTTTGTTTGTCAACACTG+AGG | + | Chr4:1505900-1505919 | None:intergenic | 35.0% |
| !! | CTCAGGTTAGTATTGGTTAT+AGG | - | Chr4:1505327-1505346 | MsG0480018200.01.T01:CDS | 35.0% |
| !! | GCATGTAGTGGATTTATCTT+TGG | - | Chr4:1505628-1505647 | MsG0480018200.01.T01:intron | 35.0% |
| !! | TCAGTGTTGACAAACAAAAG+TGG | - | Chr4:1505899-1505918 | MsG0480018200.01.T01:CDS | 35.0% |
| !!! | GCTATTTTTCAATGGGGATA+AGG | - | Chr4:1506940-1506959 | MsG0480018200.01.T01:CDS | 35.0% |
| !!! | GGATCAGCTATTTTTCAATG+GGG | - | Chr4:1506934-1506953 | MsG0480018200.01.T01:CDS | 35.0% |
| !!! | GGGATCAGCTATTTTTCAAT+GGG | - | Chr4:1506933-1506952 | MsG0480018200.01.T01:CDS | 35.0% |
| !!! | TATTTTTGGTCCTTACCTGA+TGG | + | Chr4:1506576-1506595 | None:intergenic | 35.0% |
| AACATTACAGCTGCATGTAG+TGG | - | Chr4:1505616-1505635 | MsG0480018200.01.T01:intron | 40.0% | |
| AACCAATCAATGCTGGATGT+AGG | + | Chr4:1506547-1506566 | None:intergenic | 40.0% | |
| AAGATTAGGTCAACATCACC+TGG | + | Chr4:1505266-1505285 | None:intergenic | 40.0% | |
| AGACTCAATTAAGGGTGAGT+TGG | - | Chr4:1506402-1506421 | MsG0480018200.01.T01:CDS | 40.0% | |
| AGGTGATGTTGACCTAATCT+TGG | - | Chr4:1505265-1505284 | MsG0480018200.01.T01:three_prime_UTR | 40.0% | |
| AGTTTCTGCAATGTACTTCC+TGG | + | Chr4:1505452-1505471 | None:intergenic | 40.0% | |
| ATCAGCTGCTAGTCACATTA+GGG | - | Chr4:1505657-1505676 | MsG0480018200.01.T01:intron | 40.0% | |
| ATGTCGATACTGCAAAGGTA+AGG | + | Chr4:1506149-1506168 | None:intergenic | 40.0% | |
| CTTGACCACTTTATCAGTAG+AGG | - | Chr4:1505205-1505224 | MsG0480018200.01.T01:three_prime_UTR | 40.0% | |
| GAGAAGTAACCAATCAATGC+TGG | + | Chr4:1506554-1506573 | None:intergenic | 40.0% | |
| GCCTACATGAAGTGAAACTA+TGG | + | Chr4:1506339-1506358 | None:intergenic | 40.0% | |
| GGGATAAGGTCTTACTTTGA+GGG | - | Chr4:1506954-1506973 | MsG0480018200.01.T01:CDS | 40.0% | |
| TATCAGCTGCTAGTCACATT+AGG | - | Chr4:1505656-1505675 | MsG0480018200.01.T01:intron | 40.0% | |
| TTGTTTGTCAACACTGAGGA+AGG | + | Chr4:1505896-1505915 | None:intergenic | 40.0% | |
| ! | GGACAAATTATTGCTGCTTC+TGG | - | Chr4:1506889-1506908 | MsG0480018200.01.T01:intron | 40.0% |
| ! | TGATTGGTTACTTCTCCATC+AGG | - | Chr4:1506558-1506577 | MsG0480018200.01.T01:intron | 40.0% |
| !! | AGTGCTGACTCAATTGACTT+TGG | + | Chr4:1506508-1506527 | None:intergenic | 40.0% |
| !! | ATTATTGCTGCTTCTGGCTT+TGG | - | Chr4:1506895-1506914 | MsG0480018200.01.T01:intron | 40.0% |
| !! | TACCTACATCCAGCATTGAT+TGG | - | Chr4:1506542-1506561 | MsG0480018200.01.T01:intron | 40.0% |
| !! | TCAGATGATCTTTTTGGCAC+TGG | - | Chr4:1505302-1505321 | MsG0480018200.01.T01:CDS | 40.0% |
| !!! | GGGGATCAGCTATTTTTCAA+TGG | - | Chr4:1506932-1506951 | MsG0480018200.01.T01:CDS | 40.0% |
| AAGTGCAGCTTCCATTCCAT+TGG | - | Chr4:1506828-1506847 | MsG0480018200.01.T01:intron | 45.0% | |
| ACTGGTCCTCAGGTTAGTAT+TGG | - | Chr4:1505320-1505339 | MsG0480018200.01.T01:CDS | 45.0% | |
| AGCAAGGAAAGCTCTTGAGA+TGG | - | Chr4:1505229-1505248 | MsG0480018200.01.T01:three_prime_UTR | 45.0% | |
| ATTCTGTTTGGAGATGCTGC+TGG | - | Chr4:1505843-1505862 | MsG0480018200.01.T01:CDS | 45.0% | |
| CTTTATCAGTAGAGGCAGCA+AGG | - | Chr4:1505213-1505232 | MsG0480018200.01.T01:three_prime_UTR | 45.0% | |
| GAAAGCTCTTGAGATGGCAA+AGG | - | Chr4:1505235-1505254 | MsG0480018200.01.T01:three_prime_UTR | 45.0% | |
| GGGGATAAGGTCTTACTTTG+AGG | - | Chr4:1506953-1506972 | MsG0480018200.01.T01:CDS | 45.0% | |
| GGTTACTTCTCCATCAGGTA+AGG | - | Chr4:1506563-1506582 | MsG0480018200.01.T01:intron | 45.0% | |
| TCAGCTGCTAGTCACATTAG+GGG | - | Chr4:1505658-1505677 | MsG0480018200.01.T01:intron | 45.0% | |
| TGCTGCCTCTACTGATAAAG+TGG | + | Chr4:1505213-1505232 | None:intergenic | 45.0% | |
| ! | TTTCTAATCGAAGGCGTGTC+CGG | - | Chr4:1506168-1506187 | MsG0480018200.01.T01:CDS | 45.0% |
| !! | CTTTGGTGCTGGTCTTACTT+GGG | - | Chr4:1506912-1506931 | MsG0480018200.01.T01:intron | 45.0% |
| !! | TTTGGTGCTGGTCTTACTTG+GGG | - | Chr4:1506913-1506932 | MsG0480018200.01.T01:intron | 45.0% |
| GAGTCAGCACTTCAAAAGGC+TGG | - | Chr4:1506517-1506536 | MsG0480018200.01.T01:intron | 50.0% | |
| ! | GAGATGGCAAAGGTTGATCC+AGG | - | Chr4:1505245-1505264 | MsG0480018200.01.T01:three_prime_UTR | 50.0% |
| !! | GCTTTGGTGCTGGTCTTACT+TGG | - | Chr4:1506911-1506930 | MsG0480018200.01.T01:intron | 50.0% |
| !! | TGCTGGTGCTGTTCTAGTAC+AGG | - | Chr4:1505860-1505879 | MsG0480018200.01.T01:CDS | 50.0% |
| !!! | TCTTTTTGGCACTGGTCCTC+AGG | - | Chr4:1505310-1505329 | MsG0480018200.01.T01:CDS | 50.0% |
| ATTGCAGGCGTGCAACTACG+AGG | - | Chr4:1506065-1506084 | MsG0480018200.01.T01:CDS | 55.0% | |
| !! | GCTGCTTCTGGCTTTGGTGC+TGG | - | Chr4:1506901-1506920 | MsG0480018200.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 1505185 | 1507074 | 1505185 | ID=MsG0480018200.01;Name=MsG0480018200.01 |
| Chr4 | mRNA | 1505185 | 1507074 | 1505185 | ID=MsG0480018200.01.T01;Parent=MsG0480018200.01;Name=MsG0480018200.01.T01;_AED=0.43;_eAED=0.47;_QI=0|0.2|0.16|1|0.8|0.66|6|114|341 |
| Chr4 | exon | 1505185 | 1505520 | 1505185 | ID=MsG0480018200.01.T01:exon:967;Parent=MsG0480018200.01.T01 |
| Chr4 | exon | 1505680 | 1505967 | 1505680 | ID=MsG0480018200.01.T01:exon:966;Parent=MsG0480018200.01.T01 |
| Chr4 | exon | 1506044 | 1506187 | 1506044 | ID=MsG0480018200.01.T01:exon:965;Parent=MsG0480018200.01.T01 |
| Chr4 | exon | 1506378 | 1506496 | 1506378 | ID=MsG0480018200.01.T01:exon:964;Parent=MsG0480018200.01.T01 |
| Chr4 | exon | 1506580 | 1506685 | 1506580 | ID=MsG0480018200.01.T01:exon:963;Parent=MsG0480018200.01.T01 |
| Chr4 | exon | 1506928 | 1507074 | 1506928 | ID=MsG0480018200.01.T01:exon:962;Parent=MsG0480018200.01.T01 |
| Chr4 | CDS | 1506928 | 1507074 | 1506928 | ID=MsG0480018200.01.T01:cds;Parent=MsG0480018200.01.T01 |
| Chr4 | CDS | 1506580 | 1506685 | 1506580 | ID=MsG0480018200.01.T01:cds;Parent=MsG0480018200.01.T01 |
| Chr4 | CDS | 1506378 | 1506496 | 1506378 | ID=MsG0480018200.01.T01:cds;Parent=MsG0480018200.01.T01 |
| Chr4 | CDS | 1506044 | 1506187 | 1506044 | ID=MsG0480018200.01.T01:cds;Parent=MsG0480018200.01.T01 |
| Chr4 | CDS | 1505680 | 1505967 | 1505680 | ID=MsG0480018200.01.T01:cds;Parent=MsG0480018200.01.T01 |
| Chr4 | CDS | 1505299 | 1505520 | 1505299 | ID=MsG0480018200.01.T01:cds;Parent=MsG0480018200.01.T01 |
| Chr4 | three_prime_UTR | 1505185 | 1505298 | 1505185 | ID=MsG0480018200.01.T01:three_prime_utr;Parent=MsG0480018200.01.T01 |
| Gene Sequence |
| Protein sequence |
