AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048322.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048322.01.T01 MTR_4g047630 97.203 143 4 0 272 414 25 167 8.45e-99 292
MsG0080048322.01.T01 MTR_1914s0010 67.100 231 37 4 1 202 1 221 2.23e-85 259
MsG0080048322.01.T01 MTR_1g053380 63.594 217 43 4 1 189 59 267 9.68e-80 249
MsG0080048322.01.T01 MTR_1056s0010 53.957 278 53 4 1 278 1 203 1.47e-77 239
MsG0080048322.01.T01 MTR_0113s0060 65.641 195 45 6 1 192 54 229 6.52e-74 238
MsG0080048322.01.T01 MTR_7g034290 87.234 94 11 1 1 94 1 93 3.71e-54 175
MsG0080048322.01.T01 MTR_0100s0070 70.345 145 14 2 1 118 1 143 1.71e-53 175
MsG0080048322.01.T01 MTR_0261s0010 82.292 96 17 0 1 96 1 96 1.08e-44 151
MsG0080048322.01.T01 MTR_1g053430 82.292 96 17 0 1 96 1 96 2.90e-44 150
MsG0080048322.01.T01 MTR_1g053410 82.292 96 17 0 1 96 1 96 2.90e-44 150
MsG0080048322.01.T01 MTR_0718s0040 84.375 96 15 0 1 96 1 96 5.40e-44 149
MsG0080048322.01.T01 MTR_0058s0020 85.106 94 11 1 1 94 1 91 1.80e-43 147
MsG0080048322.01.T01 MTR_1336s0010 84.043 94 9 1 1 94 1 88 6.01e-43 145
MsG0080048322.01.T01 MTR_8g445590 82.105 95 15 1 1 95 1 93 3.16e-42 144
MsG0080048322.01.T01 MTR_8g461860 80.208 96 18 1 1 96 1 95 1.46e-40 140
MsG0080048322.01.T01 MTR_0297s0030 79.348 92 17 1 1 92 1 90 1.76e-38 134
MsG0080048322.01.T01 MTR_0065s0050 82.609 92 15 1 1 92 121 211 8.29e-38 136
MsG0080048322.01.T01 MTR_0080s0060 79.012 81 15 1 1 81 76 154 1.97e-35 129
MsG0080048322.01.T01 MTR_6g046540 81.429 70 12 1 14 83 9 77 5.93e-35 124
MsG0080048322.01.T01 MTR_3g448540 48.663 187 41 7 1 157 1 162 1.36e-34 127
MsG0080048322.01.T01 MTR_0319s0020 59.649 114 19 1 117 203 182 295 8.75e-34 128
MsG0080048322.01.T01 MTR_0656s0010 78.873 71 13 1 1 71 1 69 1.63e-33 120
MsG0080048322.01.T01 MTR_0371s0010 83.871 62 10 0 18 79 1 62 1.89e-32 117
MsG0080048322.01.T01 MTR_0169s0060 75.000 72 14 1 1 72 19 86 1.14e-31 116
MsG0080048322.01.T01 MTR_1g053860 82.895 76 13 0 1 76 1 76 4.01e-30 111
MsG0080048322.01.T01 MTR_0293s0020 83.117 77 13 0 1 77 63 139 1.85e-29 112
MsG0080048322.01.T01 MTR_8g059660 84.000 75 11 1 1 75 85 158 4.08e-29 111
MsG0080048322.01.T01 MTR_0420s0020 80.822 73 14 0 1 73 1 73 3.81e-28 106
MsG0080048322.01.T01 MTR_8g059490 79.730 74 12 1 1 74 1 71 7.05e-27 103
MsG0080048322.01.T01 MTR_0008s0060 78.481 79 17 0 1 79 1 79 4.87e-26 100
MsG0080048322.01.T01 MTR_5g071945 79.661 59 10 1 1 59 1 57 7.31e-26 99.4
MsG0080048322.01.T01 MTR_7g029390 74.138 58 13 1 39 96 71 126 1.58e-23 95.5
MsG0080048322.01.T01 MTR_0273s0020 84.127 63 10 0 1 63 41 103 3.82e-22 90.9
MsG0080048322.01.T01 MTR_0044s0040 70.423 71 12 2 1 71 1 62 3.95e-22 89.4
MsG0080048322.01.T01 MTR_0090s0050 75.439 57 14 0 1 57 78 134 1.30e-21 90.5
MsG0080048322.01.T01 MTR_6g049100 52.632 76 29 3 2 71 3 77 2.12e-15 71.6
MsG0080048322.01.T01 MTR_4g028820 44.444 81 43 1 13 93 2 80 3.61e-15 71.2
MsG0080048322.01.T01 MTR_4g035700 37.097 124 45 2 127 217 47 170 1.87e-14 71.6
MsG0080048322.01.T01 MTR_7g033290 70.175 57 16 1 1 57 38 93 1.67e-13 66.2
MsG0080048322.01.T01 MTR_8g447020 51.786 56 27 0 115 170 1 56 2.78e-12 62.8
MsG0080048322.01.T01 MTR_2g033190 76.364 55 10 1 1 55 1 52 3.43e-12 64.3
MsG0080048322.01.T01 MTR_6g043390 62.791 43 16 0 35 77 41 83 4.07e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048322.01.T01 AT2G32380 61.806 144 54 1 272 414 25 168 1.39e-58 189
MsG0080048322.01.T01 AT1G05210 58.333 144 59 1 272 414 25 168 2.76e-53 175
MsG0080048322.01.T01 AT1G05220 48.507 134 68 1 272 405 25 157 6.25e-41 143

Find 109 sgRNAs with CRISPR-Local

Find 376 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGCTATTTCGCCAATTTA+AGG 0.115108 contig271end:+265933 None:intergenic
TAAAATTGTAGTGTTAAATT+TGG 0.171536 contig271end:+265866 None:intergenic
CCTCATCTCTAACCATATTT+TGG 0.183794 contig271end:-266035 MsG0080048322.01.T01:three_prime_UTR
TCCAAGTCTGCTTCAGCTTT+TGG 0.191354 contig271end:-266188 MsG0080048322.01.T01:CDS
TAGCTTATCAGATGCTTTCT+TGG 0.227810 contig271end:+266280 None:intergenic
GTCAGTTTAGCTCCTTAAAT+TGG 0.240182 contig271end:-265945 MsG0080048322.01.T01:three_prime_UTR
TATTTCCCTTTCATGTGTTT+TGG 0.258543 contig271end:-266248 MsG0080048322.01.T01:CDS
TTCACGTTGACAAGAATTTC+AGG 0.265085 contig271end:+268890 None:intergenic
TGAAAGAGAAGCAGAGTTGT+AGG 0.270954 contig271end:-266096 MsG0080048322.01.T01:three_prime_UTR
ATGATAAAGTAATCAAATAA+TGG 0.278076 contig271end:+265606 None:intergenic
TTGCAGTCTGTAAACTTTGA+TGG 0.288899 contig271end:-265751 MsG0080048322.01.T01:three_prime_UTR
GCAGGAGTATCCTTCTTTCT+AGG 0.292039 contig271end:+270784 None:intergenic
TACTGCTAAGTTTGTGGAAT+TGG 0.294636 contig271end:-271082 MsG0080048322.01.T01:CDS
CCACTAGCCTGAGCCTTCTT+AGG 0.307339 contig271end:+270583 None:intergenic
AATACCACTTGCTTGATCTA+TGG 0.309310 contig271end:-268722 MsG0080048322.01.T01:CDS
TGTTTCTCTCTCCACTTCTA+TGG 0.309906 contig271end:-268699 MsG0080048322.01.T01:intron
AGCGACTCTGAGAGGGTTGC+TGG 0.310623 contig271end:-266219 MsG0080048322.01.T01:CDS
ACATGGTACACAAATGAATA+TGG 0.320310 contig271end:-268866 MsG0080048322.01.T01:CDS
ATTTCTTCGTTGGTCTTGTT+TGG 0.321091 contig271end:-268817 MsG0080048322.01.T01:CDS
GGCTTGAACTTCTCTTTCAA+TGG 0.336755 contig271end:-268796 MsG0080048322.01.T01:CDS
AACACTAAAGTACCAAAATA+TGG 0.361157 contig271end:+266023 None:intergenic
TACAGTGCTCCTGCTGATAA+AGG 0.376041 contig271end:-270835 MsG0080048322.01.T01:CDS
CCGACGCTAATGACGGAGTT+AGG 0.380605 contig271end:-271440 MsG0080048322.01.T01:CDS
TTTCTCAAATAGCTCACAAA+AGG 0.387413 contig271end:+265658 None:intergenic
TGATAAAGTAATCAAATAAT+GGG 0.388880 contig271end:+265607 None:intergenic
ATTTCAGGAAAGTAAGAGAT+AGG 0.389807 contig271end:+268905 None:intergenic
CACAAGAGTAATGCATGTTC+TGG 0.390848 contig271end:-270727 MsG0080048322.01.T01:CDS
GCAGGAGCACTGTAAGGCTT+TGG 0.420771 contig271end:+270844 None:intergenic
ATTATTTGATTACTTTATCA+TGG 0.429734 contig271end:-265604 MsG0080048322.01.T01:three_prime_UTR
GGAAGATGTTCGCGGGAAGA+AGG 0.435680 contig271end:-271154 MsG0080048322.01.T01:CDS
TGCTGTATTATCAGAAATGA+TGG 0.436103 contig271end:-266306 MsG0080048322.01.T01:CDS
GTTGTTGAAATTGTTAGGAT+TGG 0.437358 contig271end:-265967 MsG0080048322.01.T01:three_prime_UTR
CCTAAGAAGGCTCAGGCTAG+TGG 0.440948 contig271end:-270583 MsG0080048322.01.T01:CDS
GATAAGCCTCATTTCTTCGT+TGG 0.442639 contig271end:-268827 MsG0080048322.01.T01:CDS
GCCAAAAGCTGAAGCAGACT+TGG 0.443303 contig271end:+266187 None:intergenic
TGTTTCCGTTGTGGTAAGAA+AGG 0.444793 contig271end:-270691 MsG0080048322.01.T01:CDS
AAGTGTATTAAGTTTGAGAA+TGG 0.452752 contig271end:-271015 MsG0080048322.01.T01:CDS
GAGGTTCAGATGGTGCGCTT+TGG 0.452982 contig271end:-271300 MsG0080048322.01.T01:CDS
TGAATTTCTTGAGTTGAAGC+AGG 0.457966 contig271end:-271127 MsG0080048322.01.T01:CDS
TTATCAGCAGGAGCACTGTA+AGG 0.464051 contig271end:+270838 None:intergenic
GCTGAAATCAAGCGGGCCAT+TGG 0.466743 contig271end:-270985 MsG0080048322.01.T01:CDS
ATCCACCTACTTTCAAAGTA+AGG 0.467517 contig271end:-271392 MsG0080048322.01.T01:CDS
GTGACCTTCTTCATTACAGT+TGG 0.478140 contig271end:+270627 None:intergenic
CAAGCTGTAGCTCAAGTTGT+GGG 0.483123 contig271end:-271483 MsG0080048322.01.T01:CDS
TCACCAATTCAGAAAATTGA+CGG 0.485528 contig271end:+270950 None:intergenic
AGAGTGCAAGCATGATGATA+TGG 0.490022 contig271end:-270656 MsG0080048322.01.T01:CDS
CCACCAATCATCAGCTTCCT+CGG 0.490735 contig271end:+271263 None:intergenic
AAATACCAAAACACATGAAA+GGG 0.493758 contig271end:+266243 None:intergenic
CAAGAAGCCTAAGAAGGCTC+AGG 0.494198 contig271end:-270590 MsG0080048322.01.T01:CDS
GGCAAAATGACTAAATTGAT+CGG 0.494957 contig271end:+265887 None:intergenic
GGGAAAGTGTTTGCTTTGAC+TGG 0.495470 contig271end:-270562 MsG0080048322.01.T01:intron
TTAGCGTCGGCACCAGCATT+AGG 0.500900 contig271end:+271453 None:intergenic
CGAGTATACTGCTAAGTTTG+TGG 0.506181 contig271end:-271088 MsG0080048322.01.T01:CDS
TCATACCTTACTTTGAAAGT+AGG 0.506184 contig271end:+271387 None:intergenic
AAAAGCTGAAGCAGACTTGG+AGG 0.514086 contig271end:+266190 None:intergenic
GAAAGTCCATACCATAGAAG+TGG 0.521510 contig271end:+268688 None:intergenic
TTCTCAAATAGCTCACAAAA+GGG 0.524482 contig271end:+265659 None:intergenic
TGCTGATAAAGGTAAGCAAA+AGG 0.524808 contig271end:-270824 MsG0080048322.01.T01:CDS
CACAAACTTAGCAGTATACT+CGG 0.535300 contig271end:+271089 None:intergenic
GCAAGCTGTAGCTCAAGTTG+TGG 0.537566 contig271end:-271484 MsG0080048322.01.T01:CDS
GCAGTCTCAGCAGTGTAATG+TGG 0.539049 contig271end:+271048 None:intergenic
AGCCACGTCTGAGCTCCATC+AGG 0.539314 contig271end:+271363 None:intergenic
AAAATACCAAAACACATGAA+AGG 0.539476 contig271end:+266242 None:intergenic
TTGTAGCAAACAACCTCAGC+AGG 0.539845 contig271end:+270766 None:intergenic
GTTTCCGTTGTGGTAAGAAA+GGG 0.541664 contig271end:-270690 MsG0080048322.01.T01:CDS
TACCTTACTTTGAAAGTAGG+TGG 0.542398 contig271end:+271390 None:intergenic
ATTCTCAAACTTAATACACT+TGG 0.549863 contig271end:+271017 None:intergenic
CTAAGAAGGCTCAGGCTAGT+GGG 0.553913 contig271end:-270582 MsG0080048322.01.T01:CDS
CCAAAATATGGTTAGAGATG+AGG 0.562694 contig271end:+266035 None:intergenic
TGAGAGGAGGCCTAGAAAGA+AGG 0.563268 contig271end:-270794 MsG0080048322.01.T01:CDS
GTGTAGAGAACTAAGATGGC+TGG 0.565218 contig271end:-271537 None:intergenic
TTGCTACAAGTGTGGTGAGA+AGG 0.568607 contig271end:-270752 MsG0080048322.01.T01:CDS
GTGGGGCAACAGCCTAATGC+TGG 0.572005 contig271end:-271465 MsG0080048322.01.T01:CDS
CCTCACTGCATTGCATGACC+CGG 0.572075 contig271end:+271319 None:intergenic
CATGTTCTGGTGATGTAAAA+CGG 0.573405 contig271end:-270714 MsG0080048322.01.T01:CDS
AAAGTAAGGTATGATCCTGA+TGG 0.575841 contig271end:-271378 MsG0080048322.01.T01:CDS
TAGCCGAGGAAGCTGATGAT+TGG 0.578321 contig271end:-271266 MsG0080048322.01.T01:intron
TGTTCCAACTGTAATGAAGA+AGG 0.579189 contig271end:-270631 MsG0080048322.01.T01:CDS
CAGTCTCAGCAGTGTAATGT+GGG 0.579339 contig271end:+271049 None:intergenic
GAATTTCTTGAGTTGAAGCA+GGG 0.581767 contig271end:-271126 MsG0080048322.01.T01:CDS
TGCTACAAGTGTGGTGAGAA+GGG 0.588037 contig271end:-270751 MsG0080048322.01.T01:CDS
TTCTTGTCAACGTGAAAACA+TGG 0.593333 contig271end:-268883 MsG0080048322.01.T01:CDS
CTTGCGTGCTGAAATCAAGC+GGG 0.593557 contig271end:-270992 MsG0080048322.01.T01:CDS
GCAAGAGACCAGCAATGGCA+AGG 0.595152 contig271end:-266166 MsG0080048322.01.T01:CDS
GCAGTGCAAGAAGCCTAAGA+AGG 0.597856 contig271end:-270596 MsG0080048322.01.T01:CDS
GCTGGTGCCGACGCTAATGA+CGG 0.598194 contig271end:-271447 MsG0080048322.01.T01:CDS
ACAAGACCAACGAAGAAATG+AGG 0.601127 contig271end:+268821 None:intergenic
CAGAACATGCATTACTCTTG+TGG 0.603919 contig271end:+270728 None:intergenic
ACGGATCTTCTGATATCCAA+TGG 0.606084 contig271end:+270969 None:intergenic
GCTGTATTATCAGAAATGAT+GGG 0.609261 contig271end:-266305 MsG0080048322.01.T01:CDS
GTTGAAGCAGGGTGACATGT+CGG 0.610186 contig271end:-271115 MsG0080048322.01.T01:CDS
TGTAATGAAGAAGGTCACAT+TGG 0.611049 contig271end:-270622 MsG0080048322.01.T01:CDS
TAAACATTAAGAACAGCAAG+AGG 0.615830 contig271end:+268773 None:intergenic
CCGGGTCATGCAATGCAGTG+AGG 0.617296 contig271end:-271319 MsG0080048322.01.T01:CDS
GCTTGCGTGCTGAAATCAAG+CGG 0.620183 contig271end:-270993 MsG0080048322.01.T01:CDS
AGCAAAAGGTGAATGATGAG+AGG 0.623212 contig271end:-270810 MsG0080048322.01.T01:CDS
GCAATGCAGTGAGGTTCAGA+TGG 0.623218 contig271end:-271310 MsG0080048322.01.T01:CDS
GTAAAACGGTGTTTCCGTTG+TGG 0.625498 contig271end:-270700 MsG0080048322.01.T01:CDS
GAGGTTGTTTGCTACAAGTG+TGG 0.634263 contig271end:-270760 MsG0080048322.01.T01:CDS
AACACCATAGATCAAGCAAG+TGG 0.640879 contig271end:+268718 None:intergenic
AAAGAAGGATACTCCTGCTG+AGG 0.641013 contig271end:-270779 MsG0080048322.01.T01:CDS
TAATGACGGAGTTAGGATGT+TGG 0.644063 contig271end:-271433 MsG0080048322.01.T01:CDS
ATCCTGATGGAGCTCAGACG+TGG 0.648175 contig271end:-271365 MsG0080048322.01.T01:CDS
TGGAACGCACATGTTAGCCG+AGG 0.654647 contig271end:-271280 MsG0080048322.01.T01:CDS
CCTAACTCCGTCATTAGCGT+CGG 0.657994 contig271end:+271440 None:intergenic
AAAAGGTGAATGATGAGAGG+AGG 0.665469 contig271end:-270807 MsG0080048322.01.T01:CDS
AAGCTGTAGCTCAAGTTGTG+GGG 0.677762 contig271end:-271482 MsG0080048322.01.T01:CDS
ATATGGTTAGAGATGAGGAG+AGG 0.690302 contig271end:+266040 None:intergenic
TATGCCCTTTCTTACCACAA+CGG 0.700796 contig271end:+270686 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCCAAAAATATATATAAAT+TGG + contig271end:268454-268473 None:intergenic 10.0%
!! TTAAGTTTAGTTATTTAAAA+TGG - contig271end:269177-269196 MsG0080048322.01.T01:intron 10.0%
!!! ATAATAATTTTGTTTTGATT+GGG - contig271end:267317-267336 MsG0080048322.01.T01:intron 10.0%
!!! TACCAATTTATATATATTTT+TGG - contig271end:268449-268468 MsG0080048322.01.T01:intron 10.0%
!!! TATAATAATTTTGTTTTGAT+TGG - contig271end:267316-267335 MsG0080048322.01.T01:intron 10.0%
!!! TTCTATCATAAATAATATTT+TGG + contig271end:268712-268731 None:intergenic 10.0%
!!! TTTTTAAAAGAGAAAAAATA+GGG - contig271end:267405-267424 MsG0080048322.01.T01:intron 10.0%
!! AAAAGAGAAAAAAAAATAGA+GGG + contig271end:266916-266935 None:intergenic 15.0%
!! AATTTGATACAAAACAAAAT+TGG - contig271end:269281-269300 MsG0080048322.01.T01:intron 15.0%
!! ATCAGAATAGTAATTTAAAA+AGG + contig271end:269794-269813 None:intergenic 15.0%
!! ATGATAAAGTAATCAAATAA+TGG + contig271end:271504-271523 None:intergenic 15.0%
!! ATTATTTGATTACTTTATCA+TGG - contig271end:271503-271522 MsG0080048322.01.T01:CDS 15.0%
!! ATTTGATACAAAACAAAATT+GGG - contig271end:269282-269301 MsG0080048322.01.T01:intron 15.0%
!! TAAAAGAGAAAAAAAAATAG+AGG + contig271end:266917-266936 None:intergenic 15.0%
!! TAAAATTGTAGTGTTAAATT+TGG + contig271end:271244-271263 None:intergenic 15.0%
!! TATTTAAAAAAGATAAGATC+TGG - contig271end:269522-269541 MsG0080048322.01.T01:intron 15.0%
!! TGATAAAGTAATCAAATAAT+GGG + contig271end:271503-271522 None:intergenic 15.0%
!!! ACTATTTATAAACTATTTTC+AGG + contig271end:269966-269985 None:intergenic 15.0%
!!! ATAGAAAAATTTGTTTTGAT+TGG - contig271end:267576-267595 MsG0080048322.01.T01:intron 15.0%
!!! ATATTTTGAAATTAATGAGT+TGG - contig271end:268685-268704 MsG0080048322.01.T01:intron 15.0%
!!! ATTTCTTTGAAAGTTTTTTT+AGG + contig271end:268656-268675 None:intergenic 15.0%
!!! GATCTTATCTTTTTTAAATA+TGG + contig271end:269522-269541 None:intergenic 15.0%
!!! GTTTTTAAAAGAGAAAAAAT+AGG - contig271end:267404-267423 MsG0080048322.01.T01:intron 15.0%
!!! TAGAAAAATTTGTTTTGATT+GGG - contig271end:267577-267596 MsG0080048322.01.T01:intron 15.0%
!!! TTTTAAAAGAGAAAAAATAG+GGG - contig271end:267406-267425 MsG0080048322.01.T01:intron 15.0%
!! AAATCAGAGAAACAAAAAAA+TGG - contig271end:268087-268106 MsG0080048322.01.T01:intron 20.0%
!! AATCAGAGAAACAAAAAAAT+GGG - contig271end:268088-268107 MsG0080048322.01.T01:intron 20.0%
!! ACTTATTTAAACATATCTTC+GGG + contig271end:270577-270596 None:intergenic 20.0%
!! ATAACAAAGTAACAAACAAA+CGG - contig271end:267943-267962 MsG0080048322.01.T01:intron 20.0%
!! ATCATCTTAAAATTTGGATT+AGG + contig271end:270411-270430 None:intergenic 20.0%
!! CAAATAACTATTGAATGATT+AGG - contig271end:268976-268995 MsG0080048322.01.T01:intron 20.0%
!! CACTTATTTAAACATATCTT+CGG + contig271end:270578-270597 None:intergenic 20.0%
!! GAAGATATGTTTAAATAAGT+GGG - contig271end:270577-270596 MsG0080048322.01.T01:CDS 20.0%
!! GTATCAATAATAGCAATTAA+AGG + contig271end:266631-266650 None:intergenic 20.0%
!! TCTGATATCATCTTAAAATT+TGG + contig271end:270417-270436 None:intergenic 20.0%
!! TTGGATACAACTATATAAAA+TGG - contig271end:267009-267028 MsG0080048322.01.T01:intron 20.0%
!! TTTAAAAGAGAAAAAATAGG+GGG - contig271end:267407-267426 MsG0080048322.01.T01:intron 20.0%
!! TTTGATACAAAACAAAATTG+GGG - contig271end:269283-269302 MsG0080048322.01.T01:intron 20.0%
!!! AAGAAATTGAAAGAATTTTC+CGG - contig271end:265769-265788 MsG0080048322.01.T01:three_prime_UTR 20.0%
!!! AGTTTTACCTAAAACATATA+AGG + contig271end:270218-270237 None:intergenic 20.0%
!!! ATTTGTTATAGCTTTTTCAA+GGG + contig271end:267925-267944 None:intergenic 20.0%
!!! ATTTTTTTGTTTCTCTGATT+TGG + contig271end:268088-268107 None:intergenic 20.0%
!!! GGTTATGTAATTTTATAGAT+TGG - contig271end:269725-269744 MsG0080048322.01.T01:intron 20.0%
!!! GTCTACTCTATTTAATTTTT+GGG - contig271end:271423-271442 MsG0080048322.01.T01:CDS 20.0%
!!! TATTTGTTATAGCTTTTTCA+AGG + contig271end:267926-267945 None:intergenic 20.0%
!!! TTAATTGCTATTATTGATAC+TGG - contig271end:266631-266650 MsG0080048322.01.T01:intron 20.0%
!!! TTACAAAAGAGATATTTTGA+TGG - contig271end:271297-271316 MsG0080048322.01.T01:CDS 20.0%
!!! TTGGTATTCATTTACATTTT+GGG - contig271end:269120-269139 MsG0080048322.01.T01:intron 20.0%
!!! TTGTTTTTGATGAGAAAATA+GGG - contig271end:267733-267752 MsG0080048322.01.T01:intron 20.0%
!!! TTTGGTATTCATTTACATTT+TGG - contig271end:269119-269138 MsG0080048322.01.T01:intron 20.0%
!!! TTTGTTTTTGATGAGAAAAT+AGG - contig271end:267732-267751 MsG0080048322.01.T01:intron 20.0%
!!! TTTTAGTTGTTGAAATTGTT+AGG - contig271end:271135-271154 MsG0080048322.01.T01:CDS 20.0%
!!! TTTTTTTGTTTCTCTGATTT+GGG + contig271end:268087-268106 None:intergenic 20.0%
! AAAATACCAAAACACATGAA+AGG + contig271end:270868-270887 None:intergenic 25.0%
! AAATACCAAAACACATGAAA+GGG + contig271end:270867-270886 None:intergenic 25.0%
! AAATTTATAGCAAACCATGT+AGG - contig271end:267077-267096 MsG0080048322.01.T01:intron 25.0%
! AAGTGTATTAAGTTTGAGAA+TGG - contig271end:266092-266111 MsG0080048322.01.T01:three_prime_UTR 25.0%
! AATTTATAGCAAACCATGTA+GGG - contig271end:267078-267097 MsG0080048322.01.T01:intron 25.0%
! ACATTCATTCATTAATCACT+TGG - contig271end:269053-269072 MsG0080048322.01.T01:intron 25.0%
! ACGTGTCAAAAAATTAAGAA+GGG - contig271end:267797-267816 MsG0080048322.01.T01:intron 25.0%
! ATCAAAAGATGTCAAGTAAA+AGG + contig271end:270320-270339 None:intergenic 25.0%
! ATGCATAGCAAAGTTAATAT+AGG - contig271end:268860-268879 MsG0080048322.01.T01:CDS 25.0%
! ATTAGGTCTATCATGATAAT+AGG + contig271end:270394-270413 None:intergenic 25.0%
! ATTCTCAAACTTAATACACT+TGG + contig271end:266093-266112 None:intergenic 25.0%
! CGAAGATATGTTTAAATAAG+TGG - contig271end:270576-270595 MsG0080048322.01.T01:CDS 25.0%
! GTTGAAATAAAAGACACAAA+AGG - contig271end:267432-267451 MsG0080048322.01.T01:intron 25.0%
! TAAAACAAACTCATTCAGTT+TGG - contig271end:266946-266965 MsG0080048322.01.T01:intron 25.0%
! TAACAAAGTAACAAACAAAC+GGG - contig271end:267944-267963 MsG0080048322.01.T01:intron 25.0%
! TAAGAGGAAGAATAAGAATA+AGG + contig271end:268140-268159 None:intergenic 25.0%
! TACCTATAGATTATGTATCA+AGG - contig271end:268581-268600 MsG0080048322.01.T01:intron 25.0%
! TCAATTGTAAGAGATTAATC+CGG + contig271end:268886-268905 None:intergenic 25.0%
! TCAGTACTCAAAAATTGTAA+GGG + contig271end:271396-271415 None:intergenic 25.0%
! TCGTCATTCAAAAAATTGTT+TGG - contig271end:266990-267009 MsG0080048322.01.T01:intron 25.0%
! TTAATGAGAACCTATTATCA+GGG - contig271end:269757-269776 MsG0080048322.01.T01:intron 25.0%
! TTCAGTACTCAAAAATTGTA+AGG + contig271end:271397-271416 None:intergenic 25.0%
! TTTAATGAGAACCTATTATC+AGG - contig271end:269756-269775 MsG0080048322.01.T01:intron 25.0%
!! AACACTAAAGTACCAAAATA+TGG + contig271end:271087-271106 None:intergenic 25.0%
!! AATGTGATTTTGTTACAGTT+TGG - contig271end:270279-270298 MsG0080048322.01.T01:intron 25.0%
!! AATTTGAGGCAAAACAAAAT+GGG - contig271end:269703-269722 MsG0080048322.01.T01:intron 25.0%
!! ACGTCAAACTTTTTAATGTT+AGG - contig271end:269027-269046 MsG0080048322.01.T01:intron 25.0%
!! AGAAATTGAAAGAATTTTCC+GGG - contig271end:265770-265789 MsG0080048322.01.T01:three_prime_UTR 25.0%
!! AGGCTTCTATATGTTATTTA+AGG - contig271end:268996-269015 MsG0080048322.01.T01:intron 25.0%
!! AGTATAGACTTTTATGTTGT+TGG - contig271end:269450-269469 MsG0080048322.01.T01:intron 25.0%
!! ATTCTTAAAAACCAGCTTTT+TGG - contig271end:269909-269928 MsG0080048322.01.T01:intron 25.0%
!! CTGTTGTTTGTTAAATCATT+TGG - contig271end:269101-269120 MsG0080048322.01.T01:intron 25.0%
!! GGTCTTTTCTCTTTTTAATA+TGG + contig271end:269945-269964 None:intergenic 25.0%
!! GTAATAGTCTATTAGGTTTT+TGG - contig271end:269872-269891 MsG0080048322.01.T01:intron 25.0%
!! TTCTATATGTTATTTAAGGC+AGG - contig271end:269000-269019 MsG0080048322.01.T01:intron 25.0%
!! TTCTTAAAAACCAGCTTTTT+GGG - contig271end:269910-269929 MsG0080048322.01.T01:intron 25.0%
!! TTTCTCACCTTATATGTTTT+AGG - contig271end:270208-270227 MsG0080048322.01.T01:intron 25.0%
!!! AAAATTTGTTTTGATTGGGA+TGG - contig271end:267581-267600 MsG0080048322.01.T01:intron 25.0%
!!! CGTCTACTCTATTTAATTTT+TGG - contig271end:271422-271441 MsG0080048322.01.T01:CDS 25.0%
!!! TATGCTATTTTGTCTTCTAA+GGG - contig271end:268355-268374 MsG0080048322.01.T01:intron 25.0%
!!! TGTGTGTTTTTACTAAATGA+GGG - contig271end:270517-270536 MsG0080048322.01.T01:intron 25.0%
!!! TGTTTTTGATGAGAAAATAG+GGG - contig271end:267734-267753 MsG0080048322.01.T01:intron 25.0%
!!! TTATGCTATTTTGTCTTCTA+AGG - contig271end:268354-268373 MsG0080048322.01.T01:intron 25.0%
!!! TTTGCATTAGCTTTGTAAAA+TGG - contig271end:269824-269843 MsG0080048322.01.T01:intron 25.0%
!!! TTTTGATTCTTTCTGGTTTA+TGG - contig271end:270769-270788 MsG0080048322.01.T01:CDS 25.0%
!!! TTTTTTGTTTCTCTGATTTG+GGG + contig271end:268086-268105 None:intergenic 25.0%
AACCACAACAACAAATGATA+AGG + contig271end:269210-269229 None:intergenic 30.0%
AACTAGATAACCATAAGAAC+AGG + contig271end:269252-269271 None:intergenic 30.0%
ACAATTCACAAACTAAACTC+AGG + contig271end:266742-266761 None:intergenic 30.0%
ACATGGTACACAAATGAATA+TGG - contig271end:268241-268260 MsG0080048322.01.T01:intron 30.0%
ACGTGTCATAAGATTAAGAA+GGG - contig271end:267469-267488 MsG0080048322.01.T01:intron 30.0%
AGAGAAAAAAAAATAGAGGG+AGG + contig271end:266913-266932 None:intergenic 30.0%
ATAGCAAAGTTAATATAGGC+CGG - contig271end:268864-268883 MsG0080048322.01.T01:CDS 30.0%
ATTGTGATACCATCTATAGT+TGG + contig271end:270676-270695 None:intergenic 30.0%
ATTTCAGGAAAGTAAGAGAT+AGG + contig271end:268205-268224 None:intergenic 30.0%
ATTTGTTTCACTGATATTGG+AGG - contig271end:269848-269867 MsG0080048322.01.T01:intron 30.0%
CATAATCTATAGGTATCTAC+AGG + contig271end:268576-268595 None:intergenic 30.0%
CGTGTCAAAAAATTAAGAAG+GGG - contig271end:267798-267817 MsG0080048322.01.T01:intron 30.0%
CTATAGATTATGTATCAAGG+AGG - contig271end:268584-268603 MsG0080048322.01.T01:intron 30.0%
CTCCTTGATACATAATCTAT+AGG + contig271end:268586-268605 None:intergenic 30.0%
GACGTGTCAAAAAATTAAGA+AGG - contig271end:267796-267815 MsG0080048322.01.T01:intron 30.0%
GATATGTTTAAATAAGTGGG+AGG - contig271end:270580-270599 MsG0080048322.01.T01:CDS 30.0%
GCTGTATTATCAGAAATGAT+GGG - contig271end:270802-270821 MsG0080048322.01.T01:CDS 30.0%
GGCAAAATGACTAAATTGAT+CGG + contig271end:271223-271242 None:intergenic 30.0%
GTTGTTGAAATTGTTAGGAT+TGG - contig271end:271140-271159 MsG0080048322.01.T01:CDS 30.0%
TAAACATTAAGAACAGCAAG+AGG + contig271end:268337-268356 None:intergenic 30.0%
TCACCAATTCAGAAAATTGA+CGG + contig271end:266160-266179 None:intergenic 30.0%
TGCTGTATTATCAGAAATGA+TGG - contig271end:270801-270820 MsG0080048322.01.T01:CDS 30.0%
TTAATCAGAACCTATTGTCA+GGG - contig271end:269336-269355 MsG0080048322.01.T01:intron 30.0%
TTAATTCAACGTCACAAAAC+CGG + contig271end:270624-270643 None:intergenic 30.0%
TTCTCAAATAGCTCACAAAA+GGG + contig271end:271451-271470 None:intergenic 30.0%
TTGTGATACCATCTATAGTT+GGG + contig271end:270675-270694 None:intergenic 30.0%
TTTAATCAGAACCTATTGTC+AGG - contig271end:269335-269354 MsG0080048322.01.T01:intron 30.0%
TTTACAAAGCTAATGCAAAG+TGG + contig271end:269823-269842 None:intergenic 30.0%
TTTACATATGTCTGCTATGA+TGG - contig271end:266682-266701 MsG0080048322.01.T01:intron 30.0%
TTTCTCAAATAGCTCACAAA+AGG + contig271end:271452-271471 None:intergenic 30.0%
! AAGGGGTAAGATTGTATTTT+TGG - contig271end:267487-267506 MsG0080048322.01.T01:intron 30.0%
! AAGTTTGTTCTCTGAATTTG+AGG - contig271end:269689-269708 MsG0080048322.01.T01:intron 30.0%
! ATTTGAGGCAAAACAAAATG+GGG - contig271end:269704-269723 MsG0080048322.01.T01:intron 30.0%
! ATTTTCATCCCAGCTATAAA+TGG - contig271end:270250-270269 MsG0080048322.01.T01:intron 30.0%
! GAATTTGAGGCAAAACAAAA+TGG - contig271end:269702-269721 MsG0080048322.01.T01:intron 30.0%
! TATTTCCCTTTCATGTGTTT+TGG - contig271end:270859-270878 MsG0080048322.01.T01:intron 30.0%
! TCATACCTTACTTTGAAAGT+AGG + contig271end:265723-265742 None:intergenic 30.0%
! TGTGCTACTATTGAATGATT+AGG - contig271end:268927-268946 MsG0080048322.01.T01:intron 30.0%
!! GATTCGATAGAGTTTTATGT+TGG - contig271end:268509-268528 MsG0080048322.01.T01:intron 30.0%
!! GTGTGTGTTTTTACTAAATG+AGG - contig271end:270516-270535 MsG0080048322.01.T01:intron 30.0%
!! GTGTGTTTTTACTAAATGAG+GGG - contig271end:270518-270537 MsG0080048322.01.T01:intron 30.0%
!! TTACAGCTTTTGATTCTTTC+TGG - contig271end:270762-270781 MsG0080048322.01.T01:CDS 30.0%
!! TTCCTTATCATTTGTTGTTG+TGG - contig271end:269205-269224 MsG0080048322.01.T01:intron 30.0%
!!! ATGACGGGTCTATTTTTTAA+TGG - contig271end:269662-269681 MsG0080048322.01.T01:intron 30.0%
AAAAAATAGACCCGTCATAG+CGG + contig271end:269660-269679 None:intergenic 35.0%
AAAGTAAGGTATGATCCTGA+TGG - contig271end:265729-265748 MsG0080048322.01.T01:three_prime_UTR 35.0%
AAGCTGTAAACTGAAAAGCA+AGG + contig271end:270751-270770 None:intergenic 35.0%
AATACCACTTGCTTGATCTA+TGG - contig271end:268385-268404 MsG0080048322.01.T01:intron 35.0%
AATTTGTAACCTCGCTTCAT+TGG - contig271end:269390-269409 MsG0080048322.01.T01:intron 35.0%
ACAAACTCATTCAGTTTGGT+TGG - contig271end:266950-266969 MsG0080048322.01.T01:intron 35.0%
ACATGACCAAAAAAAAGCGA+GGG + contig271end:268910-268929 None:intergenic 35.0%
ACGCTCCAGATATTTAATCT+TGG - contig271end:270482-270501 MsG0080048322.01.T01:intron 35.0%
ACTCAAAAATTGTAAGGGTC+AGG + contig271end:271391-271410 None:intergenic 35.0%
AGATACCAAAGCTCATTACA+AGG - contig271end:266202-266221 MsG0080048322.01.T01:CDS 35.0%
ATAGTCCATCTGTAAAATCG+TGG - contig271end:267985-268004 MsG0080048322.01.T01:intron 35.0%
ATATCCAATCTTGGGTGTAA+AGG - contig271end:270114-270133 MsG0080048322.01.T01:intron 35.0%
ATCCACCTACTTTCAAAGTA+AGG - contig271end:265715-265734 MsG0080048322.01.T01:three_prime_UTR 35.0%
ATCTGGAAAGAGTTCATACA+GGG - contig271end:269539-269558 MsG0080048322.01.T01:intron 35.0%
ATCTGTTAGATTACCGCTAT+TGG - contig271end:270070-270089 MsG0080048322.01.T01:intron 35.0%
ATCTTTATCAACCGCTTAGA+AGG - contig271end:269487-269506 MsG0080048322.01.T01:intron 35.0%
ATGTTCGAGATATCCAATCT+TGG - contig271end:270105-270124 MsG0080048322.01.T01:intron 35.0%
ATTACAAGGTTATGAGTGAG+CGG - contig271end:266216-266235 MsG0080048322.01.T01:CDS 35.0%
ATTGAGACACCATTTATAGC+TGG + contig271end:270262-270281 None:intergenic 35.0%
CACAAACTTAGCAGTATACT+CGG + contig271end:266021-266040 None:intergenic 35.0%
CACATGATAACCCTGATAAT+AGG + contig271end:269770-269789 None:intergenic 35.0%
CATAACCTTGTAATGAGCTT+TGG + contig271end:266210-266229 None:intergenic 35.0%
CATGTTTGTGCATCTATCAA+TGG + contig271end:268178-268197 None:intergenic 35.0%
CATTGAAAATAAGCCCTACA+TGG + contig271end:267094-267113 None:intergenic 35.0%
CCAAAATATGGTTAGAGATG+AGG + contig271end:271075-271094 None:intergenic 35.0%
CGCTCCAGATATTTAATCTT+GGG - contig271end:270483-270502 MsG0080048322.01.T01:intron 35.0%
CGTGTCATAAGATTAAGAAG+GGG - contig271end:267470-267489 MsG0080048322.01.T01:intron 35.0%
CTATTATCAGGGTTATCATG+TGG - contig271end:269768-269787 MsG0080048322.01.T01:intron 35.0%
GACGTGTCATAAGATTAAGA+AGG - contig271end:267468-267487 MsG0080048322.01.T01:intron 35.0%
GCATTTCTCATCTTAGAAAC+CGG - contig271end:270602-270621 MsG0080048322.01.T01:CDS 35.0%
GGCATATGTTTCATCGATAT+TGG - contig271end:269423-269442 MsG0080048322.01.T01:intron 35.0%
GGCATTTGTTTCACTGATAT+TGG - contig271end:269845-269864 MsG0080048322.01.T01:intron 35.0%
GGGTCATATCATTCAATGTA+GGG + contig271end:270557-270576 None:intergenic 35.0%
GTTGAAGCAAAAGACACAAA+AGG + contig271end:266891-266910 None:intergenic 35.0%
GTTGTTAGATCCTGTTCTTA+TGG - contig271end:269239-269258 MsG0080048322.01.T01:intron 35.0%
TACTGCTAAGTTTGTGGAAT+TGG - contig271end:266025-266044 MsG0080048322.01.T01:three_prime_UTR 35.0%
TAGCTTATCAGATGCTTTCT+TGG + contig271end:270830-270849 None:intergenic 35.0%
TAGTCCATCTGTAAAATCGT+GGG - contig271end:267986-268005 MsG0080048322.01.T01:intron 35.0%
TCATGATGACTCTACTTTGT+GGG - contig271end:268751-268770 MsG0080048322.01.T01:CDS 35.0%
TCTGTTAGATTACCGCTATT+GGG - contig271end:270071-270090 MsG0080048322.01.T01:intron 35.0%
TGCTATGATGGTTAAAGAGT+TGG - contig271end:266694-266713 MsG0080048322.01.T01:intron 35.0%
TGCTGATAAAGGTAAGCAAA+AGG - contig271end:266283-266302 MsG0080048322.01.T01:CDS 35.0%
TGTAATGAAGAAGGTCACAT+TGG - contig271end:266485-266504 MsG0080048322.01.T01:intron 35.0%
TGTTCCAACTGTAATGAAGA+AGG - contig271end:266476-266495 MsG0080048322.01.T01:intron 35.0%
TGTTCGAGATATCCAATCTT+GGG - contig271end:270106-270125 MsG0080048322.01.T01:intron 35.0%
TTCACGTTGACAAGAATTTC+AGG + contig271end:268220-268239 None:intergenic 35.0%
TTCATGATGACTCTACTTTG+TGG - contig271end:268750-268769 MsG0080048322.01.T01:CDS 35.0%
TTCTTGTCAACGTGAAAACA+TGG - contig271end:268224-268243 MsG0080048322.01.T01:intron 35.0%
TTGAGACACCATTTATAGCT+GGG + contig271end:270261-270280 None:intergenic 35.0%
TTGCAGTCTGTAAACTTTGA+TGG - contig271end:271356-271375 MsG0080048322.01.T01:CDS 35.0%
TTGTTACCTAGGTTGTGTTT+AGG - contig271end:265904-265923 MsG0080048322.01.T01:three_prime_UTR 35.0%
! AGGCTTCTGAATGTTATTTG+AGG - contig271end:268947-268966 MsG0080048322.01.T01:intron 35.0%
! CATGTTCTGGTGATGTAAAA+CGG - contig271end:266393-266412 MsG0080048322.01.T01:intron 35.0%
! CCTCATCTCTAACCATATTT+TGG - contig271end:271072-271091 MsG0080048322.01.T01:CDS 35.0%
! GATCCGTCAATTTTCTGAAT+TGG - contig271end:266154-266173 MsG0080048322.01.T01:CDS 35.0%
! GTCAGTTTAGCTCCTTAAAT+TGG - contig271end:271162-271181 MsG0080048322.01.T01:CDS 35.0%
! GTGCTACGATTGTTATTAAG+AGG + contig271end:268156-268175 None:intergenic 35.0%
! TACCTTACTTTGAAAGTAGG+TGG + contig271end:265720-265739 None:intergenic 35.0%
! TATTAAAGAAGCGCAGAAAG+TGG - contig271end:266817-266836 MsG0080048322.01.T01:intron 35.0%
! TGGAGGTGTAATAGTCTATT+AGG - contig271end:269865-269884 MsG0080048322.01.T01:intron 35.0%
! TTTTGCTTACCTTTATCAGC+AGG + contig271end:266284-266303 None:intergenic 35.0%
!! AGTTTTATGTTGGTACGCTT+AGG - contig271end:268519-268538 MsG0080048322.01.T01:intron 35.0%
!! ATTTCTTCGTTGGTCTTGTT+TGG - contig271end:268290-268309 MsG0080048322.01.T01:intron 35.0%
!! CTATTTTGTCTTCTAAGGGT+TGG - contig271end:268359-268378 MsG0080048322.01.T01:intron 35.0%
!! GAATTTCTTGAGTTGAAGCA+GGG - contig271end:265981-266000 MsG0080048322.01.T01:three_prime_UTR 35.0%
!! GTTGCTATTTCGCCAATTTA+AGG + contig271end:271177-271196 None:intergenic 35.0%
!! TGAATTTCTTGAGTTGAAGC+AGG - contig271end:265980-265999 MsG0080048322.01.T01:three_prime_UTR 35.0%
!! TTAAAAACCAGCTTTTTGGG+TGG - contig271end:269913-269932 MsG0080048322.01.T01:intron 35.0%
!!! TAAAAACCAGCTTTTTGGGT+GGG - contig271end:269914-269933 MsG0080048322.01.T01:intron 35.0%
AAAAATAGACCCGTCATAGC+GGG + contig271end:269659-269678 None:intergenic 40.0%
AAAAGGTGAATGATGAGAGG+AGG - contig271end:266300-266319 MsG0080048322.01.T01:CDS 40.0%
AACACCATAGATCAAGCAAG+TGG + contig271end:268392-268411 None:intergenic 40.0%
ACAACCTTTACACCCAAGAT+TGG + contig271end:270121-270140 None:intergenic 40.0%
ACAAGACCAACGAAGAAATG+AGG + contig271end:268289-268308 None:intergenic 40.0%
ACGGATCTTCTGATATCCAA+TGG + contig271end:266141-266160 None:intergenic 40.0%
AGAGTGCAAGCATGATGATA+TGG - contig271end:266451-266470 MsG0080048322.01.T01:intron 40.0%
AGCAAAAGGTGAATGATGAG+AGG - contig271end:266297-266316 MsG0080048322.01.T01:CDS 40.0%
AGCGGTAATCTAACAGATCT+GGG + contig271end:270068-270087 None:intergenic 40.0%
AGGTGAAATCTACGAGCTTT+AGG + contig271end:268120-268139 None:intergenic 40.0%
AGTCCATCTGTAAAATCGTG+GGG - contig271end:267987-268006 MsG0080048322.01.T01:intron 40.0%
ATATGGTTAGAGATGAGGAG+AGG + contig271end:271070-271089 None:intergenic 40.0%
ATTCCTAACTTCACACTCTG+AGG + contig271end:266767-266786 None:intergenic 40.0%
CACAAGAGTAATGCATGTTC+TGG - contig271end:266380-266399 MsG0080048322.01.T01:intron 40.0%
CACATGACCAAAAAAAAGCG+AGG + contig271end:268911-268930 None:intergenic 40.0%
CACGCCCAAGATTAAATATC+TGG + contig271end:270490-270509 None:intergenic 40.0%
CAGAACATGCATTACTCTTG+TGG + contig271end:266382-266401 None:intergenic 40.0%
CATGTGATAACCCTGACAAT+AGG + contig271end:269349-269368 None:intergenic 40.0%
CGAGTATACTGCTAAGTTTG+TGG - contig271end:266019-266038 MsG0080048322.01.T01:three_prime_UTR 40.0%
CGGGTCATATCATTCAATGT+AGG + contig271end:270558-270577 None:intergenic 40.0%
CTATTGTCAGGGTTATCACA+TGG - contig271end:269347-269366 MsG0080048322.01.T01:intron 40.0%
GAAAGTCCATACCATAGAAG+TGG + contig271end:268422-268441 None:intergenic 40.0%
GACATCTTTCACCTACAAGT+TGG - contig271end:269986-270005 MsG0080048322.01.T01:intron 40.0%
GATAAGCCTCATTTCTTCGT+TGG - contig271end:268280-268299 MsG0080048322.01.T01:intron 40.0%
GATATTTAATCTTGGGCGTG+AGG - contig271end:270490-270509 MsG0080048322.01.T01:intron 40.0%
GATCTGGAAAGAGTTCATAC+AGG - contig271end:269538-269557 MsG0080048322.01.T01:intron 40.0%
GATTTAAGTATCAGTCCGTG+CGG - contig271end:267188-267207 MsG0080048322.01.T01:intron 40.0%
GGCTTGAACTTCTCTTTCAA+TGG - contig271end:268311-268330 MsG0080048322.01.T01:intron 40.0%
GTCTTCTTCCCAACTATAGA+TGG - contig271end:270664-270683 MsG0080048322.01.T01:CDS 40.0%
GTGACCTTCTTCATTACAGT+TGG + contig271end:266483-266502 None:intergenic 40.0%
GTTTCCGTTGTGGTAAGAAA+GGG - contig271end:266417-266436 MsG0080048322.01.T01:intron 40.0%
TACCTAGGTTGTGTTTAGGA+GGG - contig271end:265908-265927 MsG0080048322.01.T01:three_prime_UTR 40.0%
TAGCGGTAATCTAACAGATC+TGG + contig271end:270069-270088 None:intergenic 40.0%
TATGCCCTTTCTTACCACAA+CGG + contig271end:266424-266443 None:intergenic 40.0%
TGAAAGAGAAGCAGAGTTGT+AGG - contig271end:271011-271030 MsG0080048322.01.T01:CDS 40.0%
TGACTCTACTTTGTGGGAAA+AGG - contig271end:268757-268776 MsG0080048322.01.T01:CDS 40.0%
TGGTACGCAAACAGTAAATG+AGG - contig271end:266565-266584 MsG0080048322.01.T01:intron 40.0%
TGTTTCCGTTGTGGTAAGAA+AGG - contig271end:266416-266435 MsG0080048322.01.T01:intron 40.0%
TGTTTCTCTCTCCACTTCTA+TGG - contig271end:268408-268427 MsG0080048322.01.T01:intron 40.0%
TTACCTAGGTTGTGTTTAGG+AGG - contig271end:265907-265926 MsG0080048322.01.T01:three_prime_UTR 40.0%
TTTATGTTGGTACGCTTAGG+TGG - contig271end:268522-268541 MsG0080048322.01.T01:intron 40.0%
! GGATGTTGGAAACTTTTCTG+AGG - contig271end:265688-265707 MsG0080048322.01.T01:three_prime_UTR 40.0%
! GTTCCTGAACAGGTACTTTT+CGG - contig271end:265932-265951 MsG0080048322.01.T01:three_prime_UTR 40.0%
! TAATGACGGAGTTAGGATGT+TGG - contig271end:265674-265693 MsG0080048322.01.T01:three_prime_UTR 40.0%
! TACTTTTCGGAAGATGTTCG+CGG - contig271end:265945-265964 MsG0080048322.01.T01:three_prime_UTR 40.0%
! TAGAGATGGAGACTGGTTAA+TGG + contig271end:268061-268080 None:intergenic 40.0%
! TATCAGAGTCTAAGATCCGT+TGG - contig271end:269629-269648 MsG0080048322.01.T01:intron 40.0%
!! CACACACTATTGTGCTACTT+TGG - contig271end:270457-270476 MsG0080048322.01.T01:intron 40.0%
!! CTTTCTGGTTTATGGATTGC+AGG - contig271end:270777-270796 MsG0080048322.01.T01:CDS 40.0%
!! TCTGATTTGGGGAATAGAGA+TGG + contig271end:268075-268094 None:intergenic 40.0%
!!! ACCTACAAGTTGGTTTTGCA+GGG - contig271end:269996-270015 MsG0080048322.01.T01:intron 40.0%
!!! ATTGAGCCCTCGCTTTTTTT+TGG - contig271end:268901-268920 MsG0080048322.01.T01:CDS 40.0%
!!! CGCTACGCATTGTTTTAAGT+AGG - contig271end:266654-266673 MsG0080048322.01.T01:intron 40.0%
!!! GTATTTTAGCGACTCTGAGA+GGG - contig271end:270881-270900 MsG0080048322.01.T01:intron 40.0%
AAAAGCTGAAGCAGACTTGG+AGG + contig271end:270920-270939 None:intergenic 45.0%
AAAGAAGGATACTCCTGCTG+AGG - contig271end:266328-266347 MsG0080048322.01.T01:intron 45.0%
AACATGTACCTCTGATCAGC+CGG + contig271end:266592-266611 None:intergenic 45.0%
AATCAGATCGCTAGATGCAG+AGG - contig271end:268626-268645 MsG0080048322.01.T01:intron 45.0%
ACCCTGCAAAACCAACTTGT+AGG + contig271end:270000-270019 None:intergenic 45.0%
ACCTTGAAAATTCCGCTTCG+TGG + contig271end:268015-268034 None:intergenic 45.0%
CAACCAATCCTAGAGAACGA+AGG - contig271end:265876-265895 MsG0080048322.01.T01:three_prime_UTR 45.0%
CAACTTCACCTTCGTTCTCT+AGG + contig271end:265887-265906 None:intergenic 45.0%
CAAGCCAGACTAAAAGGAGA+GGG + contig271end:268831-268850 None:intergenic 45.0%
CACAATAGTGTGTGACCCAA+CGG + contig271end:270451-270470 None:intergenic 45.0%
CAGTCTCAGCAGTGTAATGT+GGG + contig271end:266061-266080 None:intergenic 45.0%
CGAAGGTGAAGTTGTTACCT+AGG - contig271end:265893-265912 MsG0080048322.01.T01:three_prime_UTR 45.0%
CGCAAACAGTAAATGAGGAC+CGG - contig271end:266570-266589 MsG0080048322.01.T01:intron 45.0%
CTACTTTGTGGGAAAAGGCT+TGG - contig271end:268762-268781 MsG0080048322.01.T01:CDS 45.0%
CTCTCTCCACTTCTATGGTA+TGG - contig271end:268413-268432 MsG0080048322.01.T01:intron 45.0%
CTGAATTGGTGAGCAATTGC+AGG - contig271end:266168-266187 MsG0080048322.01.T01:CDS 45.0%
GAGCAATTGCAGGATCTTTG+AGG - contig271end:266178-266197 MsG0080048322.01.T01:CDS 45.0%
GCGGTAATCTAACAGATCTG+GGG + contig271end:270067-270086 None:intergenic 45.0%
GGCATCATTCACCTTCTAAG+CGG + contig271end:269501-269520 None:intergenic 45.0%
GTAAAACGGTGTTTCCGTTG+TGG - contig271end:266407-266426 MsG0080048322.01.T01:intron 45.0%
TACAGTGCTCCTGCTGATAA+AGG - contig271end:266272-266291 MsG0080048322.01.T01:CDS 45.0%
TCAAGGAGGAGTAGATCAGA+TGG - contig271end:268598-268617 MsG0080048322.01.T01:intron 45.0%
TCACCTCAGAGTGTGAAGTT+AGG - contig271end:266761-266780 MsG0080048322.01.T01:intron 45.0%
TGCTACAAGTGTGGTGAGAA+GGG - contig271end:266356-266375 MsG0080048322.01.T01:intron 45.0%
TGGAAAGAGTTCATACAGGG+TGG - contig271end:269542-269561 MsG0080048322.01.T01:intron 45.0%
TGGTTCACTTTGAGCTACTC+TGG - contig271end:267601-267620 MsG0080048322.01.T01:intron 45.0%
TGTTGTTGTCATCCTCGTTG+AGG - contig271end:268795-268814 MsG0080048322.01.T01:CDS 45.0%
TTGCTACAAGTGTGGTGAGA+AGG - contig271end:266355-266374 MsG0080048322.01.T01:intron 45.0%
TTGTAGCAAACAACCTCAGC+AGG + contig271end:266344-266363 None:intergenic 45.0%
! AAGCTGTAGCTCAAGTTGTG+GGG - contig271end:265625-265644 MsG0080048322.01.T01:three_prime_UTR 45.0%
! ACAACCCTCTCCTTTTAGTC+TGG - contig271end:268824-268843 MsG0080048322.01.T01:CDS 45.0%
! ACCACGAAGCGGAATTTTCA+AGG - contig271end:268011-268030 MsG0080048322.01.T01:intron 45.0%
! ACTTTTCGGAAGATGTTCGC+GGG - contig271end:265946-265965 MsG0080048322.01.T01:three_prime_UTR 45.0%
! CAAGCTGTAGCTCAAGTTGT+GGG - contig271end:265624-265643 MsG0080048322.01.T01:three_prime_UTR 45.0%
! GAGGTTGTTTGCTACAAGTG+TGG - contig271end:266347-266366 MsG0080048322.01.T01:intron 45.0%
! GTACCCCACGATTTTACAGA+TGG + contig271end:267993-268012 None:intergenic 45.0%
! TCCAAGTCTGCTTCAGCTTT+TGG - contig271end:270919-270938 MsG0080048322.01.T01:intron 45.0%
! TTTTGGCAAGAGACCAGCAA+TGG - contig271end:270936-270955 MsG0080048322.01.T01:intron 45.0%
!! ATTACCGCTATTGGGCTAGT+TGG - contig271end:270079-270098 MsG0080048322.01.T01:intron 45.0%
!! CTCTCCTTTTAGTCTGGCTT+GGG - contig271end:268830-268849 MsG0080048322.01.T01:CDS 45.0%
!! CTTCCGAAAAGTACCTGTTC+AGG + contig271end:265938-265957 None:intergenic 45.0%
!! GCAGGAGTATCCTTCTTTCT+AGG + contig271end:266326-266345 None:intergenic 45.0%
!! GGGAAAGTGTTTGCTTTGAC+TGG - contig271end:266545-266564 MsG0080048322.01.T01:intron 45.0%
!! TCACCTTCGTTCTCTAGGAT+TGG + contig271end:265882-265901 None:intergenic 45.0%
!! TTACCGCTATTGGGCTAGTT+GGG - contig271end:270080-270099 MsG0080048322.01.T01:intron 45.0%
!! TTATCAGCAGGAGCACTGTA+AGG + contig271end:266272-266291 None:intergenic 45.0%
!!! CACCTACAAGTTGGTTTTGC+AGG - contig271end:269995-270014 MsG0080048322.01.T01:intron 45.0%
!!! CGTTTTTTCCTTGCCATTGC+TGG + contig271end:270952-270971 None:intergenic 45.0%
!!! GGTATTTTAGCGACTCTGAG+AGG - contig271end:270880-270899 MsG0080048322.01.T01:intron 45.0%
AAAAGACCCGTGCTAAGCAC+GGG + contig271end:267223-267242 None:intergenic 50.0%
AAGAGTTGGAGCTGCTCGAA+CGG - contig271end:266708-266727 MsG0080048322.01.T01:intron 50.0%
AGGAGGAGTAGATCAGATGG+AGG - contig271end:268601-268620 MsG0080048322.01.T01:intron 50.0%
CAAAAGACCCGTGCTAAGCA+CGG + contig271end:267224-267243 None:intergenic 50.0%
CAAGAAGCCTAAGAAGGCTC+AGG - contig271end:266517-266536 MsG0080048322.01.T01:intron 50.0%
CAGAGTCTCCAAGATCCGTT+GGG - contig271end:270433-270452 MsG0080048322.01.T01:intron 50.0%
CAGTCCCAAGCCAGACTAAA+AGG + contig271end:268837-268856 None:intergenic 50.0%
CCAAGCCAGACTAAAAGGAG+AGG + contig271end:268832-268851 None:intergenic 50.0%
CCACCAATCATCAGCTTCCT+CGG + contig271end:265847-265866 None:intergenic 50.0%
CCTAACTCCGTCATTAGCGT+CGG + contig271end:265670-265689 None:intergenic 50.0%
CGAGGAAGCTGATGATTGGT+GGG - contig271end:265845-265864 MsG0080048322.01.T01:three_prime_UTR 50.0%
CTAAGAAGGCTCAGGCTAGT+GGG - contig271end:266525-266544 MsG0080048322.01.T01:intron 50.0%
CTCCCTCCTAAACACAACCT+AGG + contig271end:265913-265932 None:intergenic 50.0%
CTTGCGTGCTGAAATCAAGC+GGG - contig271end:266115-266134 MsG0080048322.01.T01:three_prime_UTR 50.0%
CTTTCACAGCCAATGAAGCG+AGG + contig271end:269402-269421 None:intergenic 50.0%
GCAATGCAGTGAGGTTCAGA+TGG - contig271end:265797-265816 MsG0080048322.01.T01:three_prime_UTR 50.0%
GCAGTCTCAGCAGTGTAATG+TGG + contig271end:266062-266081 None:intergenic 50.0%
GCAGTGCAAGAAGCCTAAGA+AGG - contig271end:266511-266530 MsG0080048322.01.T01:intron 50.0%
GCCAAAAGCTGAAGCAGACT+TGG + contig271end:270923-270942 None:intergenic 50.0%
GCTTGCGTGCTGAAATCAAG+CGG - contig271end:266114-266133 MsG0080048322.01.T01:three_prime_UTR 50.0%
GGTTGTGTTACACCTCAACG+AGG + contig271end:268810-268829 None:intergenic 50.0%
GTTGAAGCAGGGTGACATGT+CGG - contig271end:265992-266011 MsG0080048322.01.T01:three_prime_UTR 50.0%
TAGCCGAGGAAGCTGATGAT+TGG - contig271end:265841-265860 MsG0080048322.01.T01:three_prime_UTR 50.0%
TCAGAGTCTCCAAGATCCGT+TGG - contig271end:270432-270451 MsG0080048322.01.T01:intron 50.0%
TGACCCAACTAGCCCAATAG+CGG + contig271end:270086-270105 None:intergenic 50.0%
TGAGAGGAGGCCTAGAAAGA+AGG - contig271end:266313-266332 MsG0080048322.01.T01:intron 50.0%
TGGGGAATAGAGATGGAGAC+TGG + contig271end:268068-268087 None:intergenic 50.0%
TTAGGAGGGAGTTCCTGAAC+AGG - contig271end:265922-265941 MsG0080048322.01.T01:three_prime_UTR 50.0%
! CCTCTCCTTTTAGTCTGGCT+TGG - contig271end:268829-268848 MsG0080048322.01.T01:CDS 50.0%
! CGCTTCATTGGCTGTGAAAG+TGG - contig271end:269402-269421 MsG0080048322.01.T01:intron 50.0%
! GCAAGCTGTAGCTCAAGTTG+TGG - contig271end:265623-265642 MsG0080048322.01.T01:three_prime_UTR 50.0%
AAAGACCCGTGCTAAGCACG+GGG + contig271end:267222-267241 None:intergenic 55.0%
AATGAGGACCGGCTGATCAG+AGG - contig271end:266581-266600 MsG0080048322.01.T01:intron 55.0%
ATCCTGATGGAGCTCAGACG+TGG - contig271end:265742-265761 MsG0080048322.01.T01:three_prime_UTR 55.0%
CCGAGGAAGCTGATGATTGG+TGG - contig271end:265844-265863 MsG0080048322.01.T01:three_prime_UTR 55.0%
CCTAAGAAGGCTCAGGCTAG+TGG - contig271end:266524-266543 MsG0080048322.01.T01:intron 55.0%
CCTCACTGCATTGCATGACC+CGG + contig271end:265791-265810 None:intergenic 55.0%
GAGGTTCAGATGGTGCGCTT+TGG - contig271end:265807-265826 MsG0080048322.01.T01:three_prime_UTR 55.0%
GCAAGAGACCAGCAATGGCA+AGG - contig271end:270941-270960 MsG0080048322.01.T01:intron 55.0%
GCATCTCCCACCCAAAAAGC+TGG + contig271end:269923-269942 None:intergenic 55.0%
GCTGAAATCAAGCGGGCCAT+TGG - contig271end:266122-266141 MsG0080048322.01.T01:three_prime_UTR 55.0%
GGAAGATGTTCGCGGGAAGA+AGG - contig271end:265953-265972 MsG0080048322.01.T01:three_prime_UTR 55.0%
GTGTGTGACCCAACGGATCT+TGG + contig271end:270444-270463 None:intergenic 55.0%
TGGAACGCACATGTTAGCCG+AGG - contig271end:265827-265846 MsG0080048322.01.T01:three_prime_UTR 55.0%
! AATAGACCCGTCATAGCGGG+TGG + contig271end:269656-269675 None:intergenic 55.0%
! AATCGTGGGGTACCACGAAG+CGG - contig271end:268000-268019 MsG0080048322.01.T01:intron 55.0%
! CCACTAGCCTGAGCCTTCTT+AGG + contig271end:266527-266546 None:intergenic 55.0%
! CCGACGCTAATGACGGAGTT+AGG - contig271end:265667-265686 MsG0080048322.01.T01:three_prime_UTR 55.0%
!! GCAGGAGCACTGTAAGGCTT+TGG + contig271end:266266-266285 None:intergenic 55.0%
!! TTAGCGTCGGCACCAGCATT+AGG + contig271end:265657-265676 None:intergenic 55.0%
ACTGACCCCGTGCTTAGCAC+GGG - contig271end:267214-267233 MsG0080048322.01.T01:intron 60.0%
AGCCACGTCTGAGCTCCATC+AGG + contig271end:265747-265766 None:intergenic 60.0%
CACTGACCCCGTGCTTAGCA+CGG - contig271end:267213-267232 MsG0080048322.01.T01:intron 60.0%
CCGGGTCATGCAATGCAGTG+AGG - contig271end:265788-265807 MsG0080048322.01.T01:three_prime_UTR 60.0%
CGTTGGACCACCCGCTATGA+CGG - contig271end:269646-269665 MsG0080048322.01.T01:intron 60.0%
GTGGGGCAACAGCCTAATGC+TGG - contig271end:265642-265661 MsG0080048322.01.T01:three_prime_UTR 60.0%
GTTGGACCACCCGCTATGAC+GGG - contig271end:269647-269666 MsG0080048322.01.T01:intron 60.0%
! AGCGACTCTGAGAGGGTTGC+TGG - contig271end:270888-270907 MsG0080048322.01.T01:intron 60.0%
!! CGTCATAGCGGGTGGTCCAA+CGG + contig271end:269648-269667 None:intergenic 60.0%
!! GCTGGTGCCGACGCTAATGA+CGG - contig271end:265660-265679 MsG0080048322.01.T01:three_prime_UTR 60.0%
CACGGGGTCAGTGCTCCGCA+CGG + contig271end:267206-267225 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
contig271end gene 265585 271544 265585 ID=MsG0080048322.01;Name=MsG0080048322.01
contig271end mRNA 265585 271544 265585 ID=MsG0080048322.01.T01;Parent=MsG0080048322.01;Name=MsG0080048322.01.T01;_AED=0.35;_eAED=0.35;_QI=0|0.25|0.2|1|1|1|5|566|414
contig271end exon 271267 271544 271267 ID=MsG0080048322.01.T01:exon:19222;Parent=MsG0080048322.01.T01
contig271end exon 270954 271185 270954 ID=MsG0080048322.01.T01:exon:19223;Parent=MsG0080048322.01.T01
contig271end exon 270563 270872 270563 ID=MsG0080048322.01.T01:exon:19224;Parent=MsG0080048322.01.T01
contig271end exon 268700 268944 268700 ID=MsG0080048322.01.T01:exon:19225;Parent=MsG0080048322.01.T01
contig271end exon 265585 266330 265585 ID=MsG0080048322.01.T01:exon:19226;Parent=MsG0080048322.01.T01
contig271end CDS 271267 271544 271267 ID=MsG0080048322.01.T01:cds;Parent=MsG0080048322.01.T01
contig271end CDS 270954 271185 270954 ID=MsG0080048322.01.T01:cds;Parent=MsG0080048322.01.T01
contig271end CDS 270563 270872 270563 ID=MsG0080048322.01.T01:cds;Parent=MsG0080048322.01.T01
contig271end CDS 268700 268944 268700 ID=MsG0080048322.01.T01:cds;Parent=MsG0080048322.01.T01
contig271end CDS 266151 266330 266151 ID=MsG0080048322.01.T01:cds;Parent=MsG0080048322.01.T01
contig271end three_prime_UTR 265585 266150 265585 ID=MsG0080048322.01.T01:three_prime_utr;Parent=MsG0080048322.01.T01
Gene Sequence

>MsG0080048322.01.T01

ATGGCTGGAAGAAATGATGCTGCTATTGCTGCTGCGTTGCAAGCTGTAGCTCAAGTTGTGGGGCAACAGCCTAATGCTGGTGCCGACGCTAATGACGGAGTTAGGATGTTGGAAACTTTTCTGAGGAATCATCCACCTACTTTCAAAGTAAGGTATGATCCTGATGGAGCTCAGACGTGGCTCAAAGAAATTGAAAGAATTTTCCGGGTCATGCAATGCAGTGAGGTTCAGATGGTGCGCTTTGGAACGCACATGTTAGCCGAGGAAGCTGATGATTGGTACTTTTCGGAAGATGTTCGCGGGAAGAAGGAGATTGAATTTCTTGAGTTGAAGCAGGGTGACATGTCGGCGACCGAGTATACTGCTAAGTTTGTGGAATTGGCTAAGTTTTACCCACATTACACTGCTGAGACTGCTGAATTCTCCAAGTGTATTAAGTTTGAGAATGGCTTGCGTGCTGAAATCAAGCGGGCCATTGGATATCAGAAGATCCGTCAATTTTCTGAATTGAGTCGTCCAAAGCCTTACAGTGCTCCTGCTGATAAAGGTAAGCAAAAGGTGAATGATGAGAGGAGGCCTAGAAAGAAGGATACTCCTGCTGAGGTTGTTTGCTACAAGTGTGGTGAGAAGGGCCACAAGAGTAATGCATGTTCTGGTGATGTAAAACGGTGTTTCCGTTGTGGTAAGAAAGGGCATACTATTACAGAGTGCAAGCATGATGATATGGTGTGTTCCAACTGTAATGAAGAAGGTCACATTGGTTCGCAGTGCAAGAAGCCTAAGAAGGCTCAGGCTAGTGGGAAAGTGTTTGCTTTGACTGATGCACAAACATGTCTTCCTATCTCTTACTTTCCTGAAATTCTTGTCAACGTGAAAACATGGTACACAAATGAATATGGTGATTATCTTGTTGCTGATAAGCCTCATTTCTTCGTTGGTCTTGTTTGGCTTGAACTTCTCTTTCAATGGCCTCTTGCTGTTCTTAATGTTTATGCTATTTTGTCTTCTAAGGGTTGGTTTAATACCACTTGCTTGATCTATGGTGTTTCTCTCTCCACTTCTATGGTTGCTGTATTATCAGAAATGATGGGATCCAAGAAAGCATCTGATAAGCTATTGACAATGTATTTCCCTTTCATGTGTTTTGGTATTTTAGCGACTCTGAGAGGGTTGCTGGCAACTTCCTCCAAGTCTGCTTCAGCTTTTGGCAAGAGACCAGCAATGGCAAGGAAAAAACGAGCTTGA
Protein sequence

>MsG0080048322.01.T01

MAGRNDAAIAAALQAVAQVVGQQPNAGADANDGVRMLETFLRNHPPTFKVRYDPDGAQTWLKEIERIFRVMQCSEVQMVRFGTHMLAEEADDWYFSEDVRGKKEIEFLELKQGDMSATEYTAKFVELAKFYPHYTAETAEFSKCIKFENGLRAEIKRAIGYQKIRQFSELSRPKPYSAPADKGKQKVNDERRPRKKDTPAEVVCYKCGEKGHKSNACSGDVKRCFRCGKKGHTITECKHDDMVCSNCNEEGHIGSQCKKPKKAQASGKVFALTDAQTCLPISYFPEILVNVKTWYTNEYGDYLVADKPHFFVGLVWLELLFQWPLAVLNVYAILSSKGWFNTTCLIYGVSLSTSMVAVLSEMMGSKKASDKLLTMYFPFMCFGILATLRGLLATSSKSASAFGKRPAMARKKRA*