AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006406.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006406.01.T01 MTR_2g007780 56.929 267 29 5 1 267 48 228 2.12e-87 259
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006406.01.T01 AT1G25260 51.295 193 59 2 1 191 48 207 9.26e-58 184

Find 73 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGATATTCAATTGGTAATT+TGG 0.146792 2:-1455003 MsG0280006406.01.T01:CDS
TGTTTGTTTCTCTTAGATTT+TGG 0.161156 2:+1456155 None:intergenic
TGATATGCTAAACATGTTTC+TGG 0.171909 2:-1454972 MsG0280006406.01.T01:CDS
ATTCGAAATTGAAAGAGTTT+AGG 0.242754 2:-1455916 MsG0280006406.01.T01:CDS
CTTTGAAACTTTGTGAAGAT+TGG 0.248050 2:+1455802 None:intergenic
TTCGAAATTGAAAGAGTTTA+GGG 0.248422 2:-1455915 MsG0280006406.01.T01:CDS
CACAAAGAATTGATAATTAA+TGG 0.257611 2:-1456000 MsG0280006406.01.T01:five_prime_UTR
CCTGATATTGCAAGTTCTAT+TGG 0.291751 2:+1454114 None:intergenic
TGATAATATAAACTGAATAT+TGG 0.307619 2:+1453122 None:intergenic
CCAATAGAACTTGCAATATC+AGG 0.308891 2:-1454114 MsG0280006406.01.T01:CDS
CAGCAGGGATGTGGCTTGTA+TGG 0.319458 2:-1453188 MsG0280006406.01.T01:three_prime_UTR
GTTTCTGACTTTGTTGTTTG+TGG 0.322005 2:-1454240 MsG0280006406.01.T01:CDS
AGAGCAGTTCACACATGATA+TGG 0.322264 2:-1454410 MsG0280006406.01.T01:CDS
ATAGCACAGAGCAGAGGATT+TGG 0.344874 2:+1454160 None:intergenic
ATAGGCAGGAAGTAGTTATT+AGG 0.345848 2:+1454043 None:intergenic
CTGATATTGCAAGTTCTATT+GGG 0.348631 2:+1454115 None:intergenic
AAAGTTATGCAAGTTGCTAT+TGG 0.356494 2:-1455851 MsG0280006406.01.T01:CDS
GACTGAACCTGGTTTGTAGA+TGG 0.358071 2:-1453418 MsG0280006406.01.T01:CDS
TTTCTGACTTTGTTGTTTGT+GGG 0.368812 2:-1454239 MsG0280006406.01.T01:CDS
TTTGAAACTTTGTGAAGATT+GGG 0.382034 2:+1455803 None:intergenic
TAATAACTACTTCCTGCCTA+TGG 0.388971 2:-1454041 MsG0280006406.01.T01:CDS
ACCTGAAGCATCTCGTATAC+TGG 0.389289 2:-1454200 MsG0280006406.01.T01:CDS
GAACAGGCATGCCTTGCTTC+CGG 0.401326 2:+1454377 None:intergenic
CAGCTATTGCGTGGAGATGC+TGG 0.406333 2:-1455185 MsG0280006406.01.T01:CDS
GTACCTTTATTTAACCGAAC+AGG 0.425105 2:+1454361 None:intergenic
TAGCACAGAGCAGAGGATTT+GGG 0.430753 2:+1454161 None:intergenic
ATGCCTGTTCGGTTAAATAA+AGG 0.445190 2:-1454364 MsG0280006406.01.T01:intron
ACTGAACCTGGTTTGTAGAT+GGG 0.448280 2:-1453417 MsG0280006406.01.T01:CDS
TAGGCTGTTTAATGAATTTG+AGG 0.448398 2:-1454820 MsG0280006406.01.T01:CDS
ATGTTGAAGATTACAAGATA+TGG 0.449326 2:-1453316 MsG0280006406.01.T01:three_prime_UTR
ACCAGTATACGAGATGCTTC+AGG 0.450575 2:+1454199 None:intergenic
TATAGTAGCTGATATTCAAT+TGG 0.452717 2:-1455011 MsG0280006406.01.T01:CDS
TCCAAAATTCACAGGTGTTG+TGG 0.453240 2:-1454268 MsG0280006406.01.T01:intron
GGAAGCAAGGCATGCCTGTT+CGG 0.453618 2:-1454375 MsG0280006406.01.T01:CDS
AGTTGAAGTTGCACTACTCT+AGG 0.455282 2:-1454083 MsG0280006406.01.T01:CDS
TCATGTGTGAACTGCTCTAA+AGG 0.461609 2:+1454415 None:intergenic
ATGCCTTGCTTCCGGAGAAA+AGG 0.467064 2:+1454385 None:intergenic
GATATGCTAAACATGTTTCT+GGG 0.467878 2:-1454971 MsG0280006406.01.T01:CDS
TCACAAATTTGATTAAGTTA+CGG 0.468350 2:+1453164 None:intergenic
GGATGCGACTTTGCAAGAAC+AGG 0.475150 2:-1454798 MsG0280006406.01.T01:CDS
GGTGTGGATGCAATTTACTT+TGG 0.475626 2:-1453295 MsG0280006406.01.T01:three_prime_UTR
GTGGATGCAATTTACTTTGG+AGG 0.481220 2:-1453292 MsG0280006406.01.T01:three_prime_UTR
CAATCTTCACAAAGTTTCAA+AGG 0.483461 2:-1455801 MsG0280006406.01.T01:intron
GGCTACGTTTCGACTGAACC+TGG 0.495680 2:-1453429 MsG0280006406.01.T01:CDS
AAAATTTCACAGTCACATTG+AGG 0.502429 2:-1456208 MsG0280006406.01.T01:five_prime_UTR
CTGACTTTGTTGTTTGTGGG+AGG 0.510778 2:-1454236 MsG0280006406.01.T01:CDS
CTCTGCTCTGTGCTATGTGC+TGG 0.512106 2:-1454153 MsG0280006406.01.T01:CDS
GAACTCTACATTGATGGGCC+TGG 0.523108 2:-1453377 MsG0280006406.01.T01:CDS
AGGCTGTTTAATGAATTTGA+GGG 0.523767 2:-1454819 MsG0280006406.01.T01:CDS
CTGAACCTGGTTTGTAGATG+GGG 0.535144 2:-1453416 MsG0280006406.01.T01:CDS
CATTCAACATCTGAATCGCC+AGG 0.535824 2:+1453359 None:intergenic
GATACAGTACTATGTAGTAT+TGG 0.536486 2:-1453254 MsG0280006406.01.T01:three_prime_UTR
ACTGTTTCAGGTTGAACTCA+AGG 0.537015 2:-1454443 MsG0280006406.01.T01:intron
TGGTCGAATAACCCATAGGC+AGG 0.540579 2:+1454029 None:intergenic
GCGTTTGATGGGAAATATGA+TGG 0.540790 2:-1453450 MsG0280006406.01.T01:CDS
TGACTTTGTTGTTTGTGGGA+GGG 0.544160 2:-1454235 MsG0280006406.01.T01:CDS
AATAACTACTTCCTGCCTAT+GGG 0.551048 2:-1454040 MsG0280006406.01.T01:intron
GTTGAAGTTGCACTACTCTA+GGG 0.552790 2:-1454082 MsG0280006406.01.T01:CDS
AAATTTCACAGTCACATTGA+GGG 0.552927 2:-1456207 MsG0280006406.01.T01:five_prime_UTR
TGTCTAAAGAAGAAGTTGAA+AGG 0.565730 2:-1455145 MsG0280006406.01.T01:intron
ATTGGGTTTGATTTCATCAG+AGG 0.566460 2:+1455820 None:intergenic
CAGAACCCCATCTACAAACC+AGG 0.589817 2:+1453411 None:intergenic
CGAGATGCTTCAGGTGACAA+AGG 0.595978 2:+1454208 None:intergenic
GGTTTGTAGATGGGGTTCTG+AGG 0.610326 2:-1453408 MsG0280006406.01.T01:CDS
GGGTTTGATTTCATCAGAGG+CGG 0.612319 2:+1455823 None:intergenic
AGTACTGTATCACTACATCA+AGG 0.640398 2:+1453266 None:intergenic
TTTCAGGTTGAACTCAAGGA+GGG 0.645581 2:-1454439 MsG0280006406.01.T01:intron
GAAGATTACAAGATATGGTG+TGG 0.670814 2:-1453311 MsG0280006406.01.T01:three_prime_UTR
CAGCACATAGCACAGAGCAG+AGG 0.671169 2:+1454154 None:intergenic
ATATGCTAAACATGTTTCTG+GGG 0.685153 2:-1454970 MsG0280006406.01.T01:intron
GTTTCAGGTTGAACTCAAGG+AGG 0.696156 2:-1454440 MsG0280006406.01.T01:intron
TGTGCTGGCGAACATAAATG+TGG 0.722392 2:-1454138 MsG0280006406.01.T01:CDS
AAATCTAAGAGAAACAAACA+AGG 0.734245 2:-1456152 MsG0280006406.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTTTGTTTGAATAAAT+TGG - Chr2:1454382-1454401 MsG0280006406.01.T01:CDS 10.0%
!! AAAAAAAAAATCAAACCAAA+CGG + Chr2:1453753-1453772 None:intergenic 15.0%
!! AACTAAAAAGTAATTAATGA+TGG + Chr2:1455566-1455585 None:intergenic 15.0%
!! ACATAAAAATGAAAGATATA+GGG + Chr2:1455422-1455441 None:intergenic 15.0%
!! ATATTCATAAAAAATGTAAG+AGG + Chr2:1454093-1454112 None:intergenic 15.0%
!! CAAATTTAATGTACAATTAT+TGG - Chr2:1454248-1454267 MsG0280006406.01.T01:CDS 15.0%
!! TACATAAAAATGAAAGATAT+AGG + Chr2:1455423-1455442 None:intergenic 15.0%
!! TGATAATATAAACTGAATAT+TGG + Chr2:1456208-1456227 None:intergenic 15.0%
!!! TTTGTTTTATTTTTTTTGTG+TGG - Chr2:1453578-1453597 MsG0280006406.01.T01:intron 15.0%
!!! TTTTTATTGATGCTATTTAT+AGG - Chr2:1454488-1454507 MsG0280006406.01.T01:intron 15.0%
!! AAAAAGTAATTAATGATGGT+GGG + Chr2:1455562-1455581 None:intergenic 20.0%
!! AAATAGCATCAATAAAAATC+AGG + Chr2:1454486-1454505 None:intergenic 20.0%
!! AAGAAAATGACATAATTGAA+TGG - Chr2:1454698-1454717 MsG0280006406.01.T01:intron 20.0%
!! ATTAATTACTTCAATAACCA+AGG + Chr2:1455749-1455768 None:intergenic 20.0%
!! CAAAAAGAAAAAAATCAATG+GGG + Chr2:1455471-1455490 None:intergenic 20.0%
!! CCAAAAAGAAAAAAATCAAT+GGG + Chr2:1455472-1455491 None:intergenic 20.0%
!! GAAATTAGTAACACTAAATA+TGG + Chr2:1455321-1455340 None:intergenic 20.0%
!! TAAAAAGTAATTAATGATGG+TGG + Chr2:1455563-1455582 None:intergenic 20.0%
!! TCACAAATTTGATTAAGTTA+CGG + Chr2:1456166-1456185 None:intergenic 20.0%
!! TGATGTACATACTATAATAA+TGG + Chr2:1455816-1455835 None:intergenic 20.0%
!! TTACTATTGAGAATTTAACA+AGG + Chr2:1455706-1455725 None:intergenic 20.0%
!!! ATGCAAATAAATAAGCTTTT+AGG - Chr2:1453796-1453815 MsG0280006406.01.T01:intron 20.0%
!!! ATGTGATTTTGATTAGTTTT+TGG - Chr2:1453610-1453629 MsG0280006406.01.T01:intron 20.0%
!!! CACAAAGAATTGATAATTAA+TGG - Chr2:1453327-1453346 MsG0280006406.01.T01:three_prime_UTR 20.0%
!!! CCATTGATTTTTTTCTTTTT+GGG - Chr2:1455470-1455489 MsG0280006406.01.T01:intron 20.0%
!!! TATTTAGTGTTACTAATTTC+AGG - Chr2:1455321-1455340 MsG0280006406.01.T01:intron 20.0%
!!! TCATTTTCTTAAATCATTAC+CGG + Chr2:1454688-1454707 None:intergenic 20.0%
!!! TTATCAAATTAGAAGTTTTG+TGG - Chr2:1456222-1456241 MsG0280006406.01.T01:five_prime_UTR 20.0%
!!! TTGAAGTAATTAATTAGTCT+CGG - Chr2:1455755-1455774 MsG0280006406.01.T01:intron 20.0%
!!! TTGTGAACTAGAAATATTTT+TGG - Chr2:1456180-1456199 MsG0280006406.01.T01:five_prime_UTR 20.0%
!!! TTTTTGAAAATCTGTAACAA+AGG - Chr2:1453996-1454015 MsG0280006406.01.T01:intron 20.0%
! AAATCTAAGAGAAACAAACA+AGG - Chr2:1453175-1453194 MsG0280006406.01.T01:three_prime_UTR 25.0%
! AATTGAAGAAAAAAACACGA+TGG - Chr2:1453243-1453262 MsG0280006406.01.T01:three_prime_UTR 25.0%
! AGCTAAAATTGTATCTTCAT+CGG - Chr2:1453839-1453858 MsG0280006406.01.T01:intron 25.0%
! ATGTTGAAGATTACAAGATA+TGG - Chr2:1456011-1456030 MsG0280006406.01.T01:five_prime_UTR 25.0%
! ATTATAGGTTTCTACTAACA+AGG + Chr2:1454625-1454644 None:intergenic 25.0%
! ATTCGAAATTGAAAGAGTTT+AGG - Chr2:1453411-1453430 MsG0280006406.01.T01:CDS 25.0%
! CCCAAAAAGAAAAAAATCAA+TGG + Chr2:1455473-1455492 None:intergenic 25.0%
! TAAAAATGAAAGATATAGGG+AGG + Chr2:1455419-1455438 None:intergenic 25.0%
! TATAGTAGCTGATATTCAAT+TGG - Chr2:1454316-1454335 MsG0280006406.01.T01:intron 25.0%
! TATTATTGATAAGCTTGTCA+AGG + Chr2:1453885-1453904 None:intergenic 25.0%
! TGAAATGGAGAGAATATAAA+TGG - Chr2:1455623-1455642 MsG0280006406.01.T01:intron 25.0%
! TTCGAAATTGAAAGAGTTTA+GGG - Chr2:1453412-1453431 MsG0280006406.01.T01:CDS 25.0%
!! ACTCATTCAATTAAAAGTGT+TGG - Chr2:1454756-1454775 MsG0280006406.01.T01:intron 25.0%
!! ATTTTGAACTCTACATTGAT+GGG - Chr2:1455945-1455964 MsG0280006406.01.T01:exon 25.0%
!! CTGATATTCAATTGGTAATT+TGG - Chr2:1454324-1454343 MsG0280006406.01.T01:intron 25.0%
!! TATAATAATGGTGCTAATTG+AGG + Chr2:1455804-1455823 None:intergenic 25.0%
!! TTTGAAACTTTGTGAAGATT+GGG + Chr2:1453527-1453546 None:intergenic 25.0%
!!! ATCGTTAACCTTTTTCAATA+GGG - Chr2:1454405-1454424 MsG0280006406.01.T01:CDS 25.0%
!!! CCCATTGATTTTTTTCTTTT+TGG - Chr2:1455469-1455488 MsG0280006406.01.T01:intron 25.0%
!!! GTCAATTATTAGTCTTCAAT+TGG + Chr2:1455036-1455055 None:intergenic 25.0%
!!! TGATTTTTTTCTTTTTGGGT+GGG - Chr2:1455474-1455493 MsG0280006406.01.T01:intron 25.0%
!!! TGTTTGTTTCTCTTAGATTT+TGG + Chr2:1453175-1453194 None:intergenic 25.0%
!!! TTGATTTTTTTCTTTTTGGG+TGG - Chr2:1455473-1455492 MsG0280006406.01.T01:intron 25.0%
!!! TTGGAGATTTTTAAGAAAAG+CGG - Chr2:1453629-1453648 MsG0280006406.01.T01:intron 25.0%
AAAATTTCACAGTCACATTG+AGG - Chr2:1453119-1453138 MsG0280006406.01.T01:three_prime_UTR 30.0%
AAAGTTATGCAAGTTGCTAT+TGG - Chr2:1453476-1453495 MsG0280006406.01.T01:intron 30.0%
AAATTTCACAGTCACATTGA+GGG - Chr2:1453120-1453139 MsG0280006406.01.T01:three_prime_UTR 30.0%
ACAAAATAAGCCAATCCAAA+CGG - Chr2:1453934-1453953 MsG0280006406.01.T01:intron 30.0%
ACATCATCAACGTTATAATG+TGG - Chr2:1455830-1455849 MsG0280006406.01.T01:CDS 30.0%
AGGCTGTTTAATGAATTTGA+GGG - Chr2:1454508-1454527 MsG0280006406.01.T01:intron 30.0%
CAATCTTCACAAAGTTTCAA+AGG - Chr2:1453526-1453545 MsG0280006406.01.T01:intron 30.0%
CATCAATAAAAATCAGGTTC+TGG + Chr2:1454480-1454499 None:intergenic 30.0%
CTGATATTGCAAGTTCTATT+GGG + Chr2:1455215-1455234 None:intergenic 30.0%
CTTTCAAAGACAACGAAAAA+AGG - Chr2:1453297-1453316 MsG0280006406.01.T01:three_prime_UTR 30.0%
GATACAGTACTATGTAGTAT+TGG - Chr2:1456073-1456092 MsG0280006406.01.T01:intron 30.0%
GATATGCTAAACATGTTTCT+GGG - Chr2:1454356-1454375 MsG0280006406.01.T01:intron 30.0%
GGATAATGTGAACAATCAAA+TGG + Chr2:1455450-1455469 None:intergenic 30.0%
TAGGCTGTTTAATGAATTTG+AGG - Chr2:1454507-1454526 MsG0280006406.01.T01:intron 30.0%
TGACACATAAAATAGACAGT+GGG - Chr2:1455518-1455537 MsG0280006406.01.T01:intron 30.0%
TGATATGCTAAACATGTTTC+TGG - Chr2:1454355-1454374 MsG0280006406.01.T01:intron 30.0%
TGTCTAAAGAAGAAGTTGAA+AGG - Chr2:1454182-1454201 MsG0280006406.01.T01:CDS 30.0%
TTGACACATAAAATAGACAG+TGG - Chr2:1455517-1455536 MsG0280006406.01.T01:intron 30.0%
! ATATGCTAAACATGTTTCTG+GGG - Chr2:1454357-1454376 MsG0280006406.01.T01:intron 30.0%
! GATTTTGAACTCTACATTGA+TGG - Chr2:1455944-1455963 MsG0280006406.01.T01:exon 30.0%
! TGATGAATGTATTTTCAGCA+GGG - Chr2:1456124-1456143 MsG0280006406.01.T01:intron 30.0%
! TTGATGAATGTATTTTCAGC+AGG - Chr2:1456123-1456142 MsG0280006406.01.T01:intron 30.0%
!! ATTATTAGTCTTCAATTGGC+AGG + Chr2:1455032-1455051 None:intergenic 30.0%
!! ATTTTCTGAGAAGCTACTAA+TGG - Chr2:1453726-1453745 MsG0280006406.01.T01:intron 30.0%
!! CTTTGAAACTTTGTGAAGAT+TGG + Chr2:1453528-1453547 None:intergenic 30.0%
!! CTTTTAATTGAATGAGTGTC+TGG + Chr2:1454753-1454772 None:intergenic 30.0%
!! GATTTTGGCATTTTGAACTA+TGG + Chr2:1453160-1453179 None:intergenic 30.0%
!! TTTCTGACTTTGTTGTTTGT+GGG - Chr2:1455088-1455107 MsG0280006406.01.T01:intron 30.0%
!! TTTTCTGAGAAGCTACTAAT+GGG - Chr2:1453727-1453746 MsG0280006406.01.T01:intron 30.0%
!!! CATTTGAGAAGTTGTTTTTC+AGG + Chr2:1453961-1453980 None:intergenic 30.0%
!!! CTAGATTCAACCTACTTTTT+CGG + Chr2:1454566-1454585 None:intergenic 30.0%
!!! GATCGTTAACCTTTTTCAAT+AGG - Chr2:1454404-1454423 MsG0280006406.01.T01:CDS 30.0%
!!! TCAAGTAGCAAGTTTTTTCT+CGG - Chr2:1453446-1453465 MsG0280006406.01.T01:CDS 30.0%
!!! TCGTTAACCTTTTTCAATAG+GGG - Chr2:1454406-1454425 MsG0280006406.01.T01:CDS 30.0%
AAGACAACGAAAAAAGGAAG+AGG - Chr2:1453303-1453322 MsG0280006406.01.T01:three_prime_UTR 35.0%
AATAACCAAGGTCAAGATGT+TGG + Chr2:1455737-1455756 None:intergenic 35.0%
AATAACTACTTCCTGCCTAT+GGG - Chr2:1455287-1455306 MsG0280006406.01.T01:intron 35.0%
AATATGGTCGAATAACCCAT+AGG + Chr2:1455305-1455324 None:intergenic 35.0%
AGTACTGTATCACTACATCA+AGG + Chr2:1456064-1456083 None:intergenic 35.0%
ATAGGCAGGAAGTAGTTATT+AGG + Chr2:1455287-1455306 None:intergenic 35.0%
ATCTCTCCAAATGGATGAAA+TGG - Chr2:1455608-1455627 MsG0280006406.01.T01:intron 35.0%
ATGCCTGTTCGGTTAAATAA+AGG - Chr2:1454963-1454982 MsG0280006406.01.T01:intron 35.0%
CAAAATAAGCCAATCCAAAC+GGG - Chr2:1453935-1453954 MsG0280006406.01.T01:intron 35.0%
CCAATAGAACTTGCAATATC+AGG - Chr2:1455213-1455232 MsG0280006406.01.T01:intron 35.0%
CCTGATATTGCAAGTTCTAT+TGG + Chr2:1455216-1455235 None:intergenic 35.0%
GAAGATTACAAGATATGGTG+TGG - Chr2:1456016-1456035 MsG0280006406.01.T01:five_prime_UTR 35.0%
TAATAACTACTTCCTGCCTA+TGG - Chr2:1455286-1455305 MsG0280006406.01.T01:intron 35.0%
TGGAGAGAATATAAATGGAG+AGG - Chr2:1455628-1455647 MsG0280006406.01.T01:intron 35.0%
TGTGTCTATATCTCTCCAAA+TGG - Chr2:1455599-1455618 MsG0280006406.01.T01:intron 35.0%
TTCTCTCCATTTCATCCATT+TGG + Chr2:1455617-1455636 None:intergenic 35.0%
TTGAATGGAATCACACATGT+CGG - Chr2:1454713-1454732 MsG0280006406.01.T01:intron 35.0%
TTGACGTTTCCAAAATTCAC+AGG - Chr2:1455051-1455070 MsG0280006406.01.T01:intron 35.0%
TTTCAAGATCTGACTGTTTC+AGG - Chr2:1454872-1454891 MsG0280006406.01.T01:intron 35.0%
! ATGATATGGAACCTTTTCTC+CGG - Chr2:1454931-1454950 MsG0280006406.01.T01:intron 35.0%
! ATTGGGTTTGATTTCATCAG+AGG + Chr2:1453510-1453529 None:intergenic 35.0%
! GTACCTTTATTTAACCGAAC+AGG + Chr2:1454969-1454988 None:intergenic 35.0%
! TTTGGCATTTTGAACTATGG+AGG + Chr2:1453157-1453176 None:intergenic 35.0%
! TTTTTGTTACAGCTATTGCG+TGG - Chr2:1454133-1454152 MsG0280006406.01.T01:CDS 35.0%
!! GTTTCTGACTTTGTTGTTTG+TGG - Chr2:1455087-1455106 MsG0280006406.01.T01:intron 35.0%
!! TAAAAGTGTTGGTGCTACAA+AGG - Chr2:1454767-1454786 MsG0280006406.01.T01:intron 35.0%
!!! CGTTAACCTTTTTCAATAGG+GGG - Chr2:1454407-1454426 MsG0280006406.01.T01:CDS 35.0%
!!! GTTAACCTTTTTCAATAGGG+GGG - Chr2:1454408-1454427 MsG0280006406.01.T01:CDS 35.0%
!!! TTTTTTTCTTTTTGGGTGGG+TGG - Chr2:1455477-1455496 MsG0280006406.01.T01:intron 35.0%
AAGATAGAACGAAGTGGAGT+AGG - Chr2:1455347-1455366 MsG0280006406.01.T01:intron 40.0%
ACTCCACTTCGTTCTATCTT+TGG + Chr2:1455347-1455366 None:intergenic 40.0%
AGAAACCCCCCTATTGAAAA+AGG + Chr2:1454416-1454435 None:intergenic 40.0%
AGAGCAGTTCACACATGATA+TGG - Chr2:1454917-1454936 MsG0280006406.01.T01:intron 40.0%
AGTGGGTCCTACTATTATGT+GGG - Chr2:1455535-1455554 MsG0280006406.01.T01:intron 40.0%
AGTTGAAGTTGCACTACTCT+AGG - Chr2:1455244-1455263 MsG0280006406.01.T01:intron 40.0%
GCGTTTGATGGGAAATATGA+TGG - Chr2:1455877-1455896 MsG0280006406.01.T01:CDS 40.0%
GGTGTGGATGCAATTTACTT+TGG - Chr2:1456032-1456051 MsG0280006406.01.T01:five_prime_UTR 40.0%
GTGGATGCAATTTACTTTGG+AGG - Chr2:1456035-1456054 MsG0280006406.01.T01:five_prime_UTR 40.0%
GTTGAAGTTGCACTACTCTA+GGG - Chr2:1455245-1455264 MsG0280006406.01.T01:intron 40.0%
TCATGTGTGAACTGCTCTAA+AGG + Chr2:1454915-1454934 None:intergenic 40.0%
TCTATCCAACATCTTGACCT+TGG - Chr2:1455729-1455748 MsG0280006406.01.T01:intron 40.0%
TGTCTGTGTAGGTGCATTAT+AGG + Chr2:1454640-1454659 None:intergenic 40.0%
! ACTGAACCTGGTTTGTAGAT+GGG - Chr2:1455910-1455929 MsG0280006406.01.T01:CDS 40.0%
! ATGTATTTTCAGCAGGGATG+TGG - Chr2:1456130-1456149 MsG0280006406.01.T01:intron 40.0%
! TCCAAAATTCACAGGTGTTG+TGG - Chr2:1455059-1455078 MsG0280006406.01.T01:intron 40.0%
! TCCACAACACCTGTGAATTT+TGG + Chr2:1455063-1455082 None:intergenic 40.0%
! TGCTTTTGACAGCGTTTGAT+GGG - Chr2:1455866-1455885 MsG0280006406.01.T01:CDS 40.0%
!! ACTGTTTCAGGTTGAACTCA+AGG - Chr2:1454884-1454903 MsG0280006406.01.T01:intron 40.0%
!! TCGACATGTCAGTGTTGTTT+CGG + Chr2:1454663-1454682 None:intergenic 40.0%
!! TGACTTTGTTGTTTGTGGGA+GGG - Chr2:1455092-1455111 MsG0280006406.01.T01:intron 40.0%
!! TTTCAGGTTGAACTCAAGGA+GGG - Chr2:1454888-1454907 MsG0280006406.01.T01:intron 40.0%
!!! GATTCAACCTACTTTTTCGG+TGG + Chr2:1454563-1454582 None:intergenic 40.0%
ACCAGTATACGAGATGCTTC+AGG + Chr2:1455131-1455150 None:intergenic 45.0%
AGCATTGCCACCGAAAAAGT+AGG - Chr2:1454553-1454572 MsG0280006406.01.T01:intron 45.0%
AGGCCAAAGATAGAACGAAG+TGG - Chr2:1455341-1455360 MsG0280006406.01.T01:intron 45.0%
ATAGCACAGAGCAGAGGATT+TGG + Chr2:1455170-1455189 None:intergenic 45.0%
ATGGAGAGGATCTTAACTCG+TGG - Chr2:1455642-1455661 MsG0280006406.01.T01:intron 45.0%
CAGTGGGTCCTACTATTATG+TGG - Chr2:1455534-1455553 MsG0280006406.01.T01:intron 45.0%
CATTCAACATCTGAATCGCC+AGG + Chr2:1455971-1455990 None:intergenic 45.0%
GAGCAACTACAGGATATGTC+AGG + Chr2:1454808-1454827 None:intergenic 45.0%
TAGCACAGAGCAGAGGATTT+GGG + Chr2:1455169-1455188 None:intergenic 45.0%
TGGAGAGGATCTTAACTCGT+GGG - Chr2:1455643-1455662 MsG0280006406.01.T01:intron 45.0%
! ACCTGAAGCATCTCGTATAC+TGG - Chr2:1455127-1455146 MsG0280006406.01.T01:intron 45.0%
! CTGAACCTGGTTTGTAGATG+GGG - Chr2:1455911-1455930 MsG0280006406.01.T01:CDS 45.0%
! GACTGAACCTGGTTTGTAGA+TGG - Chr2:1455909-1455928 MsG0280006406.01.T01:CDS 45.0%
! GGGTTTGATTTCATCAGAGG+CGG + Chr2:1453507-1453526 None:intergenic 45.0%
! TGTGCTGGCGAACATAAATG+TGG - Chr2:1455189-1455208 MsG0280006406.01.T01:intron 45.0%
!! CTGACTTTGTTGTTTGTGGG+AGG - Chr2:1455091-1455110 MsG0280006406.01.T01:intron 45.0%
!! CTGCTTTTGACAGCGTTTGA+TGG - Chr2:1455865-1455884 MsG0280006406.01.T01:CDS 45.0%
!! GTTTCAGGTTGAACTCAAGG+AGG - Chr2:1454887-1454906 MsG0280006406.01.T01:intron 45.0%
!! TGTTGTTTCGGTGTCTGTGT+AGG + Chr2:1454651-1454670 None:intergenic 45.0%
!!! AGTTGTTTTTCAGGCCCGTT+TGG + Chr2:1453952-1453971 None:intergenic 45.0%
!!! TTTTTCAGGCCCGTTTGGAT+TGG + Chr2:1453947-1453966 None:intergenic 45.0%
ATGCCTTGCTTCCGGAGAAA+AGG + Chr2:1454945-1454964 None:intergenic 50.0%
CAACACTGACATGTCGACAC+CGG - Chr2:1454666-1454685 MsG0280006406.01.T01:intron 50.0%
CAGAACCCCATCTACAAACC+AGG + Chr2:1455919-1455938 None:intergenic 50.0%
CCAGATGCATGAGCAACTAC+AGG + Chr2:1454818-1454837 None:intergenic 50.0%
CCTGTAGTTGCTCATGCATC+TGG - Chr2:1454815-1454834 MsG0280006406.01.T01:CDS 50.0%
CGAGATGCTTCAGGTGACAA+AGG + Chr2:1455122-1455141 None:intergenic 50.0%
GAGAGGATCTTAACTCGTGG+GGG - Chr2:1455645-1455664 MsG0280006406.01.T01:intron 50.0%
GGAGAGGATCTTAACTCGTG+GGG - Chr2:1455644-1455663 MsG0280006406.01.T01:intron 50.0%
GGATGCGACTTTGCAAGAAC+AGG - Chr2:1454529-1454548 MsG0280006406.01.T01:intron 50.0%
GGTGGGACCCACATAATAGT+AGG + Chr2:1455545-1455564 None:intergenic 50.0%
GGTTTGTAGATGGGGTTCTG+AGG - Chr2:1455919-1455938 MsG0280006406.01.T01:CDS 50.0%
TGGTCGAATAACCCATAGGC+AGG + Chr2:1455301-1455320 None:intergenic 50.0%
TTTGGGTGGGTGGTGCAATT+TGG - Chr2:1455487-1455506 MsG0280006406.01.T01:intron 50.0%
! GAACCTTTTCTCCGGAAGCA+AGG - Chr2:1454939-1454958 MsG0280006406.01.T01:intron 50.0%
! GAACTCTACATTGATGGGCC+TGG - Chr2:1455950-1455969 MsG0280006406.01.T01:five_prime_UTR 50.0%
! GAAGCTACTAATGGGCCGTT+TGG - Chr2:1453735-1453754 MsG0280006406.01.T01:intron 50.0%
CAGCACATAGCACAGAGCAG+AGG + Chr2:1455176-1455195 None:intergenic 55.0%
CAGCTATTGCGTGGAGATGC+TGG - Chr2:1454142-1454161 MsG0280006406.01.T01:CDS 55.0%
CTCTGCTCTGTGCTATGTGC+TGG - Chr2:1455174-1455193 MsG0280006406.01.T01:CDS 55.0%
GAACAGGCATGCCTTGCTTC+CGG + Chr2:1454953-1454972 None:intergenic 55.0%
GGAAGCAAGGCATGCCTGTT+CGG - Chr2:1454952-1454971 MsG0280006406.01.T01:intron 55.0%
GGCTACGTTTCGACTGAACC+TGG - Chr2:1455898-1455917 MsG0280006406.01.T01:CDS 55.0%
! CAGCAGGGATGTGGCTTGTA+TGG - Chr2:1456139-1456158 MsG0280006406.01.T01:intron 55.0%
Chromosome Type Strat End Strand Name
Chr2 gene 1453107 1456242 1453107 ID=MsG0280006406.01;Name=MsG0280006406.01
Chr2 mRNA 1453107 1456242 1453107 ID=MsG0280006406.01.T01;Parent=MsG0280006406.01;Name=MsG0280006406.01.T01;_AED=0.30;_eAED=0.44;_QI=202|0.57|0.75|1|0.85|0.75|8|251|267
Chr2 exon 1453107 1453471 1453107 ID=MsG0280006406.01.T01:exon:1167;Parent=MsG0280006406.01.T01
Chr2 exon 1454041 1454276 1454041 ID=MsG0280006406.01.T01:exon:1166;Parent=MsG0280006406.01.T01
Chr2 exon 1454365 1454455 1454365 ID=MsG0280006406.01.T01:exon:1165;Parent=MsG0280006406.01.T01
Chr2 exon 1454779 1454839 1454779 ID=MsG0280006406.01.T01:exon:1164;Parent=MsG0280006406.01.T01
Chr2 exon 1454971 1455069 1454971 ID=MsG0280006406.01.T01:exon:1163;Parent=MsG0280006406.01.T01
Chr2 exon 1455146 1455204 1455146 ID=MsG0280006406.01.T01:exon:1162;Parent=MsG0280006406.01.T01
Chr2 exon 1455802 1456057 1455802 ID=MsG0280006406.01.T01:exon:1161;Parent=MsG0280006406.01.T01
Chr2 exon 1456153 1456242 1456153 ID=MsG0280006406.01.T01:exon:1160;Parent=MsG0280006406.01.T01
Chr2 five_prime_UTR 1456153 1456242 1456153 ID=MsG0280006406.01.T01:five_prime_utr;Parent=MsG0280006406.01.T01
Chr2 five_prime_UTR 1455946 1456057 1455946 ID=MsG0280006406.01.T01:five_prime_utr;Parent=MsG0280006406.01.T01
Chr2 CDS 1455802 1455945 1455802 ID=MsG0280006406.01.T01:cds;Parent=MsG0280006406.01.T01
Chr2 CDS 1455146 1455204 1455146 ID=MsG0280006406.01.T01:cds;Parent=MsG0280006406.01.T01
Chr2 CDS 1454971 1455069 1454971 ID=MsG0280006406.01.T01:cds;Parent=MsG0280006406.01.T01
Chr2 CDS 1454779 1454839 1454779 ID=MsG0280006406.01.T01:cds;Parent=MsG0280006406.01.T01
Chr2 CDS 1454365 1454455 1454365 ID=MsG0280006406.01.T01:cds;Parent=MsG0280006406.01.T01
Chr2 CDS 1454041 1454276 1454041 ID=MsG0280006406.01.T01:cds;Parent=MsG0280006406.01.T01
Chr2 CDS 1453358 1453471 1453358 ID=MsG0280006406.01.T01:cds;Parent=MsG0280006406.01.T01
Chr2 three_prime_UTR 1453107 1453357 1453107 ID=MsG0280006406.01.T01:three_prime_utr;Parent=MsG0280006406.01.T01
Gene Sequence

>MsG0280006406.01.T01

ATGAGAAATTCGAAATTGAAAGAGTTTAGGGAACAATTACAATCAAGTAGCAAGTTTTTTCTCGGATCTAACAAAGTTATGCAAGTTGCTATTGGTCGTTCCGCCTCTGATGAAATCAAACCCAATCTTCACAAAGTTTCAAAGCTATTGCGTGGAGATGCTGGAATGATTTTTACGAATTTGTCTAAAGAAGAAGTTGAAAGCATATATGTATGTGTTCTTTGTCTATGTAACTGTCTTATAGTAGCTGATATTCAATTGGTAATTTGGCATGCTATTGATATGCTAAACATGTTTCTGGGGCTGTTTAATGAATTTGAGGGATGCGACTTTGCAAGAACAGGAAGCATTGCCACCGAAAAAGTTGAACTCAAGGAGGGTCCTTTAGAGCAGTTCACACATGATATGGAACCTTTTCTCCGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGGTGTTGTGGAGCTTGTTTCTGACTTTGTTGTTTGTGGGAGGGAAAGCCTTTGTCACCTGAAGCATCTCGTATACTGGTTAGTTGTTGTTATTACCCAAATCCTCTGCTCTGTGCTATGTGCTGGCGAACATAAATGTGGCCCAATAGAACTTGCAATATCAGGACTTCGAAAGTTGAAGTTGCACTACTCTAGGGATGACTCACACTTCAACCTAATAACTACTTCCTGCCTATGGCGTTTGATGGGAAATATGATGGCTACGTTTCGACTGAACCTGGTTTGTAGATGGGGTTCTGAGGATGATTTTGAACTCTACATTGATGGGCCTGGCGATTCAGATGTTGAATGA

Protein sequence

>MsG0280006406.01.T01

MRNSKLKEFREQLQSSSKFFLGSNKVMQVAIGRSASDEIKPNLHKVSKLLRGDAGMIFTNLSKEEVESIYVCVLCLCNCLIVADIQLVIWHAIDMLNMFLGLFNEFEGCDFARTGSIATEKVELKEGPLEQFTHDMEPFLRKQGMPVRLNKGVVELVSDFVVCGRESLCHLKHLVYWLVVVITQILCSVLCAGEHKCGPIELAISGLRKLKLHYSRDDSHFNLITTSCLWRLMGNMMATFRLNLVCRWGSEDDFELYIDGPGDSDVE*