Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480023639.01.T01 | XP_003630513.1 | 92.135 | 445 | 2 | 1 | 1 | 412 | 1 | 445 | 0 | 847 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480023639.01.T01 | P18025 | 84.419 | 430 | 34 | 1 | 1 | 397 | 1 | 430 | 0 | 761 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480023639.01.T01 | G7LHC6 | 92.135 | 445 | 2 | 1 | 1 | 412 | 1 | 445 | 0.0 | 847 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0180000115.01 | MsG0480023639.01 | 0.816722 | 4.775289e-52 | 3.410109e-49 |
MsG0180001828.01 | MsG0480023639.01 | 0.808709 | 2.710948e-50 | 1.560977e-47 |
MsG0180004062.01 | MsG0480023639.01 | 0.803014 | 4.266851e-49 | 2.120851e-46 |
MsG0180004249.01 | MsG0480023639.01 | 0.811648 | 6.301741e-51 | 3.922289e-48 |
MsG0180005524.01 | MsG0480023639.01 | 0.837684 | 4.494597e-57 | 5.883606e-54 |
MsG0180005530.01 | MsG0480023639.01 | 0.827505 | 1.507935e-54 | 1.458577e-51 |
MsG0180005962.01 | MsG0480023639.01 | -0.840440 | 8.683965e-58 | 1.237045e-54 |
MsG0280010977.01 | MsG0480023639.01 | 0.801683 | 8.022286e-49 | 3.854767e-46 |
MsG0280011089.01 | MsG0480023639.01 | 0.801483 | 8.815234e-49 | 4.214631e-46 |
MsG0380014907.01 | MsG0480023639.01 | 0.809610 | 1.738207e-50 | 1.025300e-47 |
MsG0480020675.01 | MsG0480023639.01 | 0.801440 | 8.994090e-49 | 4.295503e-46 |
MsG0480021305.01 | MsG0480023639.01 | 0.816913 | 4.326988e-52 | 3.106174e-49 |
MsG0480022514.01 | MsG0480023639.01 | 0.821064 | 4.925657e-53 | 3.966197e-50 |
MsG0480022586.01 | MsG0480023639.01 | 0.828056 | 1.111327e-54 | 1.092427e-51 |
MsG0480023172.01 | MsG0480023639.01 | 0.808805 | 2.585089e-50 | 1.492297e-47 |
MsG0480023463.01 | MsG0480023639.01 | 0.800312 | 1.528831e-48 | 7.096295e-46 |
MsG0480023620.01 | MsG0480023639.01 | 0.802970 | 4.356022e-49 | 2.162845e-46 |
MsG0480023639.01 | MsG0580024462.01 | 0.813104 | 3.031164e-51 | 1.961393e-48 |
MsG0480023639.01 | MsG0580025131.01 | 0.803269 | 3.778210e-49 | 1.890412e-46 |
MsG0480023639.01 | MsG0580027798.01 | 0.828169 | 1.044002e-54 | 1.029613e-51 |
MsG0480023639.01 | MsG0680030447.01 | 0.844576 | 6.941829e-59 | 1.125651e-55 |
MsG0480023639.01 | MsG0680030865.01 | 0.832371 | 9.821630e-56 | 1.095586e-52 |
MsG0480023639.01 | MsG0680031762.01 | 0.800282 | 1.550520e-48 | 7.191351e-46 |
MsG0480023639.01 | MsG0780038603.01 | 0.823299 | 1.492941e-53 | 1.280400e-50 |
MsG0480023639.01 | MsG0780039155.01 | 0.840645 | 7.676289e-58 | 1.100431e-54 |
MsG0480023639.01 | MsG0780040529.01 | 0.813628 | 2.324413e-51 | 1.525821e-48 |
MsG0480023639.01 | MsG0780040834.01 | 0.801568 | 8.468498e-49 | 4.057480e-46 |
MsG0480023639.01 | MsG0780041448.01 | 0.819664 | 1.031555e-52 | 7.988177e-50 |
MsG0480023639.01 | MsG0780041699.01 | 0.815161 | 1.065047e-51 | 7.287024e-49 |
MsG0480023639.01 | MsG0880042380.01 | 0.822714 | 2.043858e-53 | 1.724204e-50 |
MsG0480023639.01 | MsG0880042544.01 | 0.824902 | 6.274954e-54 | 5.633340e-51 |
MsG0480023639.01 | MsG0880042836.01 | 0.822529 | 2.256153e-53 | 1.893408e-50 |
MsG0480023639.01 | MsG0880043985.01 | 0.805231 | 1.475135e-49 | 7.762746e-47 |
MsG0480023639.01 | MsG0880043992.01 | 0.801491 | 8.782475e-49 | 4.199849e-46 |
MsG0480023639.01 | MsG0880044067.01 | 0.862156 | 6.187554e-64 | 1.794347e-60 |
MsG0480023639.01 | MsG0880044782.01 | 0.811108 | 8.256912e-51 | 5.066755e-48 |
MsG0480023639.01 | MsG0880045294.01 | 0.821414 | 4.088357e-53 | 3.323930e-50 |
MsG0480023639.01 | MsG0880045483.01 | 0.855795 | 4.963628e-62 | 1.159691e-58 |
MsG0480023639.01 | MsG0880045716.01 | 0.815902 | 7.286958e-52 | 5.088004e-49 |
MsG0380015814.01 | MsG0480023639.01 | 0.811942 | 5.438094e-51 | 3.411464e-48 |
MsG0380016005.01 | MsG0480023639.01 | 0.800317 | 1.525404e-48 | 7.081174e-46 |
MsG0380016247.01 | MsG0480023639.01 | 0.844210 | 8.705113e-59 | 1.395426e-55 |
MsG0380016505.01 | MsG0480023639.01 | 0.803832 | 2.887892e-49 | 1.466027e-46 |
MsG0380016893.01 | MsG0480023639.01 | 0.816183 | 6.306341e-52 | 4.437569e-49 |
MsG0480018278.01 | MsG0480023639.01 | 0.845494 | 3.921713e-59 | 6.547126e-56 |
MsG0280007067.01 | MsG0480023639.01 | 0.867501 | 1.306211e-65 | 4.570784e-62 |
MsG0280007452.01 | MsG0480023639.01 | 0.817041 | 4.051012e-52 | 2.918299e-49 |
MsG0280007506.01 | MsG0480023639.01 | 0.810143 | 1.334475e-50 | 7.981875e-48 |
MsG0280009417.01 | MsG0480023639.01 | 0.808118 | 3.624351e-50 | 2.054939e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480023639.01.T01 | MTR_8g098360 | 92.135 | 445 | 2 | 1 | 1 | 412 | 1 | 445 | 0.0 | 847 |
MsG0480023639.01.T01 | MTR_7g089120 | 85.814 | 430 | 28 | 1 | 1 | 397 | 1 | 430 | 0.0 | 741 |
MsG0480023639.01.T01 | MTR_2g031310 | 85.116 | 430 | 31 | 1 | 1 | 397 | 1 | 430 | 0.0 | 740 |
MsG0480023639.01.T01 | MTR_3g113970 | 85.814 | 430 | 26 | 2 | 1 | 395 | 1 | 430 | 0.0 | 738 |
MsG0480023639.01.T01 | MTR_4g094535 | 84.651 | 430 | 33 | 1 | 1 | 397 | 1 | 430 | 0.0 | 736 |
MsG0480023639.01.T01 | MTR_4g019110 | 83.953 | 430 | 36 | 1 | 1 | 397 | 1 | 430 | 0.0 | 735 |
MsG0480023639.01.T01 | MTR_4g017630 | 84.186 | 430 | 35 | 1 | 1 | 397 | 1 | 430 | 0.0 | 734 |
MsG0480023639.01.T01 | MTR_1g101130 | 84.651 | 430 | 33 | 1 | 1 | 397 | 1 | 430 | 0.0 | 734 |
MsG0480023639.01.T01 | MTR_4g019090 | 83.953 | 430 | 36 | 1 | 1 | 397 | 1 | 430 | 0.0 | 734 |
MsG0480023639.01.T01 | MTR_8g107250 | 82.167 | 443 | 45 | 2 | 1 | 409 | 1 | 443 | 0.0 | 729 |
MsG0480023639.01.T01 | MTR_8g085980 | 37.757 | 437 | 223 | 4 | 1 | 391 | 1 | 434 | 1.34e-106 | 322 |
MsG0480023639.01.T01 | MTR_1g106005 | 37.307 | 453 | 237 | 4 | 1 | 410 | 1 | 449 | 9.08e-106 | 320 |
MsG0480023639.01.T01 | MTR_3g110720 | 37.558 | 434 | 228 | 3 | 1 | 391 | 1 | 434 | 9.08e-105 | 317 |
MsG0480023639.01.T01 | MTR_7g085800 | 36.613 | 437 | 228 | 4 | 1 | 391 | 1 | 434 | 6.15e-104 | 315 |
MsG0480023639.01.T01 | MTR_4g097830 | 37.529 | 437 | 224 | 4 | 1 | 391 | 1 | 434 | 1.46e-103 | 314 |
MsG0480023639.01.T01 | MTR_6g029190 | 36.203 | 453 | 239 | 4 | 1 | 409 | 1 | 447 | 3.03e-100 | 306 |
MsG0480023639.01.T01 | MTR_7g117050 | 32.952 | 437 | 245 | 6 | 2 | 390 | 3 | 439 | 5.24e-84 | 265 |
MsG0480023639.01.T01 | MTR_2g041670 | 33.556 | 450 | 256 | 5 | 1 | 410 | 1 | 447 | 1.28e-81 | 259 |
MsG0480023639.01.T01 | MTR_2g041400 | 33.647 | 425 | 240 | 4 | 1 | 385 | 1 | 423 | 1.80e-78 | 249 |
MsG0480023639.01.T01 | MTR_3g063410 | 31.757 | 148 | 93 | 1 | 223 | 362 | 30 | 177 | 9.21e-28 | 108 |
MsG0480023639.01.T01 | MTR_3g063410 | 29.851 | 134 | 86 | 1 | 237 | 362 | 5 | 138 | 1.04e-20 | 88.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480023639.01.T01 | AT5G12250 | 85.349 | 430 | 30 | 1 | 1 | 397 | 1 | 430 | 0.0 | 741 |
MsG0480023639.01.T01 | AT5G62700 | 84.884 | 430 | 32 | 1 | 1 | 397 | 1 | 430 | 0.0 | 738 |
MsG0480023639.01.T01 | AT5G62690 | 84.884 | 430 | 32 | 1 | 1 | 397 | 1 | 430 | 0.0 | 738 |
MsG0480023639.01.T01 | AT5G23860 | 84.884 | 430 | 32 | 1 | 1 | 397 | 1 | 430 | 0.0 | 736 |
MsG0480023639.01.T01 | AT5G23860 | 84.884 | 430 | 32 | 1 | 1 | 397 | 1 | 430 | 0.0 | 736 |
MsG0480023639.01.T01 | AT1G75780 | 84.687 | 431 | 32 | 2 | 1 | 397 | 1 | 431 | 0.0 | 735 |
MsG0480023639.01.T01 | AT2G29550 | 84.651 | 430 | 33 | 1 | 1 | 397 | 1 | 430 | 0.0 | 731 |
MsG0480023639.01.T01 | AT4G20890 | 84.112 | 428 | 35 | 1 | 1 | 395 | 1 | 428 | 0.0 | 729 |
MsG0480023639.01.T01 | AT5G44340 | 83.488 | 430 | 38 | 1 | 1 | 397 | 1 | 430 | 0.0 | 729 |
MsG0480023639.01.T01 | AT1G20010 | 83.295 | 431 | 38 | 2 | 1 | 397 | 1 | 431 | 0.0 | 725 |
MsG0480023639.01.T01 | AT5G19780 | 37.757 | 437 | 223 | 4 | 1 | 391 | 1 | 434 | 6.57e-107 | 323 |
MsG0480023639.01.T01 | AT5G19770 | 37.757 | 437 | 223 | 4 | 1 | 391 | 1 | 434 | 6.57e-107 | 323 |
MsG0480023639.01.T01 | AT1G64740 | 37.529 | 437 | 224 | 4 | 1 | 391 | 1 | 434 | 8.07e-107 | 323 |
MsG0480023639.01.T01 | AT4G14960 | 37.558 | 434 | 228 | 3 | 1 | 391 | 1 | 434 | 5.55e-104 | 315 |
MsG0480023639.01.T01 | AT1G04820 | 37.327 | 434 | 229 | 3 | 1 | 391 | 1 | 434 | 4.83e-103 | 313 |
MsG0480023639.01.T01 | AT1G50010 | 37.327 | 434 | 229 | 3 | 1 | 391 | 1 | 434 | 4.83e-103 | 313 |
MsG0480023639.01.T01 | AT4G14960 | 37.306 | 386 | 199 | 3 | 1 | 343 | 1 | 386 | 8.54e-85 | 265 |
MsG0480023639.01.T01 | AT3G61650 | 32.671 | 453 | 257 | 6 | 2 | 406 | 3 | 455 | 7.10e-84 | 265 |
MsG0480023639.01.T01 | AT5G05620 | 33.181 | 437 | 244 | 6 | 2 | 390 | 3 | 439 | 1.64e-83 | 263 |
Find 102 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTTGACACAACATTATTTA+AGG | 0.115881 | 4:-87985877 | MsG0480023639.01.T01:three_prime_UTR |
CCCTGCAAATATAGTGAATT+TGG | 0.128734 | 4:-87985507 | MsG0480023639.01.T01:three_prime_UTR |
GTCGATGTCTTCGACATTTA+TGG | 0.180721 | 4:-87986142 | MsG0480023639.01.T01:CDS |
AACATTATTTAAGGTTCTTT+TGG | 0.219666 | 4:-87985868 | MsG0480023639.01.T01:three_prime_UTR |
ATCAAATTGGAGGAAAGTTT+TGG | 0.229733 | 4:-87988622 | MsG0480023639.01.T01:CDS |
TTGTTTGTTGTGTGTGTTAT+TGG | 0.249226 | 4:-87985807 | MsG0480023639.01.T01:three_prime_UTR |
ACACTTGATTTCACATTGTT+TGG | 0.262813 | 4:+87986189 | None:intergenic |
GGGGAATTCGACATCTATTC+AGG | 0.279124 | 4:-87986121 | MsG0480023639.01.T01:CDS |
CACATTTGCTGTGTGAGTTC+TGG | 0.291813 | 4:+87986366 | None:intergenic |
CCCAAATTCACTATATTTGC+AGG | 0.307965 | 4:+87985506 | None:intergenic |
ACATGTTGCCTTCGATTTCC+TGG | 0.324939 | 4:-87986516 | MsG0480023639.01.T01:CDS |
TCTAGGCTAAAATATGCTTT+TGG | 0.331662 | 4:-87985531 | MsG0480023639.01.T01:three_prime_UTR |
CCTGCAAATATAGTGAATTT+GGG | 0.342361 | 4:-87985506 | MsG0480023639.01.T01:three_prime_UTR |
GTTGTGTGTGTTATTGGTAA+TGG | 0.343935 | 4:-87985801 | MsG0480023639.01.T01:three_prime_UTR |
TTGAGAACCTCTTGATGTTA+AGG | 0.349935 | 4:+87986410 | None:intergenic |
GGTCAATGTGGAAATCAAAT+TGG | 0.350835 | 4:-87988635 | MsG0480023639.01.T01:CDS |
CATTCGCTTGGAGGTGGAAC+TGG | 0.363770 | 4:-87986968 | MsG0480023639.01.T01:CDS |
TACTGTTATGTTTAAGAGAA+AGG | 0.366259 | 4:-87986070 | MsG0480023639.01.T01:CDS |
GCCAACTCAACTCTGATCTT+AGG | 0.372257 | 4:-87986494 | MsG0480023639.01.T01:CDS |
CAAGAACTCGTCTTACTTTG+TGG | 0.372832 | 4:-87986220 | MsG0480023639.01.T01:CDS |
AAAGTCAACATCATTCTATC+TGG | 0.375155 | 4:+87986899 | None:intergenic |
TGGATACTCTTCTCTGATCT+TGG | 0.375902 | 4:+87986919 | None:intergenic |
GGAAATGTTTAGGCGTGTTT+CGG | 0.380130 | 4:-87986100 | MsG0480023639.01.T01:CDS |
GTTTGTGATATTCCGCCAAC+AGG | 0.382753 | 4:-87986168 | MsG0480023639.01.T01:CDS |
TGAGAACCTCTTGATGTTAA+GGG | 0.384725 | 4:+87986411 | None:intergenic |
TCGATGTCTTCGACATTTAT+GGG | 0.391069 | 4:-87986141 | MsG0480023639.01.T01:CDS |
CATCTATTCAGGAAATGTTT+AGG | 0.391950 | 4:-87986110 | MsG0480023639.01.T01:CDS |
TGTTCCTAGAGCTGTTCTAA+TGG | 0.402683 | 4:-87988486 | MsG0480023639.01.T01:CDS |
CTTGGAGGTGGAACTGGATC+AGG | 0.406313 | 4:-87986962 | MsG0480023639.01.T01:CDS |
CAAATTTGTCATTCGCTTGG+AGG | 0.423709 | 4:-87986977 | MsG0480023639.01.T01:CDS |
CTCAGTGTTCCCTTCACCAA+AGG | 0.429890 | 4:-87986876 | MsG0480023639.01.T01:CDS |
TGAGAGTAATATGAATGATT+TGG | 0.437777 | 4:-87985992 | MsG0480023639.01.T01:CDS |
TCATTGTTGTTGATATCAAA+TGG | 0.437987 | 4:+87986547 | None:intergenic |
GAACATGGGATAGATCCTTC+AGG | 0.466390 | 4:-87988584 | MsG0480023639.01.T01:CDS |
TACTCATATATATTATGAGT+TGG | 0.474850 | 4:-87985734 | MsG0480023639.01.T01:three_prime_UTR |
AACAGAGAGAGTTGCATTGT+AGG | 0.476137 | 4:+87986832 | None:intergenic |
TGTCCATGGTACCTGGTTCA+AGG | 0.476857 | 4:+87988462 | None:intergenic |
CAGCAATATCAAGATGCTGC+TGG | 0.478321 | 4:-87985958 | MsG0480023639.01.T01:CDS |
ACTCGTCTTACTTTGTGGAA+TGG | 0.479530 | 4:-87986215 | MsG0480023639.01.T01:CDS |
ATTTGTCATTCGCTTGGAGG+TGG | 0.482876 | 4:-87986974 | MsG0480023639.01.T01:CDS |
CATTCACTCTCTCAAGTTGA+AGG | 0.484150 | 4:+87988540 | None:intergenic |
TCCTAAGATCAGAGTTGAGT+TGG | 0.484588 | 4:+87986493 | None:intergenic |
TTTCAAATTTGTCATTCGCT+TGG | 0.487407 | 4:-87986980 | MsG0480023639.01.T01:CDS |
AGATCAGAGTTGAGTTGGCC+AGG | 0.492155 | 4:+87986498 | None:intergenic |
ACCACGGTATCAGAAACCTT+TGG | 0.497655 | 4:+87986860 | None:intergenic |
GTTAGATACCTACCATGTCT+TGG | 0.498617 | 4:+87986312 | None:intergenic |
ACCAAAGGTTTCTGATACCG+TGG | 0.501560 | 4:-87986861 | MsG0480023639.01.T01:CDS |
GGTGGAACTGGATCAGGAAT+GGG | 0.503857 | 4:-87986956 | MsG0480023639.01.T01:CDS |
TTGGTATACTGCTGAAGGTA+TGG | 0.508640 | 4:-87986037 | MsG0480023639.01.T01:CDS |
CAGAACTCACACAGCAAATG+TGG | 0.515042 | 4:-87986365 | MsG0480023639.01.T01:CDS |
ACAGAGAGAGTTGCATTGTA+GGG | 0.519248 | 4:+87986833 | None:intergenic |
TTGCATTGGTATACTGCTGA+AGG | 0.520097 | 4:-87986042 | MsG0480023639.01.T01:CDS |
AGGTGGAACTGGATCAGGAA+TGG | 0.523254 | 4:-87986957 | MsG0480023639.01.T01:CDS |
GTAGACGTGGGAAAGGGATG+AGG | 0.527644 | 4:+87986457 | None:intergenic |
GTTCTAATGGACCTTGAACC+AGG | 0.529290 | 4:-87988473 | MsG0480023639.01.T01:intron |
AGAAGGTGAGTTTGATGAAG+AGG | 0.531082 | 4:-87985929 | MsG0480023639.01.T01:CDS |
ATATGATCAATTTGTATAGT+CGG | 0.533573 | 4:-87985568 | MsG0480023639.01.T01:three_prime_UTR |
GATCCTTCAGGAAGTTATGT+AGG | 0.538806 | 4:-87988572 | MsG0480023639.01.T01:CDS |
GTTTGATGAAGAGGATGAAG+AGG | 0.539736 | 4:-87985920 | MsG0480023639.01.T01:CDS |
TGCTGAAGGTATGGATGAGA+TGG | 0.544333 | 4:-87986028 | MsG0480023639.01.T01:CDS |
ATTGACCTGCTTGTACATGA+AGG | 0.549639 | 4:+87988651 | None:intergenic |
AGGTCCATTAGAACAGCTCT+AGG | 0.555093 | 4:+87988482 | None:intergenic |
ATATCAAGATGCTGCTGGAG+TGG | 0.555240 | 4:-87985953 | MsG0480023639.01.T01:CDS |
GAAATCCTTCATGTACAAGC+AGG | 0.558579 | 4:-87988656 | MsG0480023639.01.T01:CDS |
CGATGTCTTCGACATTTATG+GGG | 0.567518 | 4:-87986140 | MsG0480023639.01.T01:CDS |
GTGTCAAAGTCATTGCAACT+AGG | 0.573104 | 4:+87985891 | None:intergenic |
ATGCATGGTTCTTGATAATG+AGG | 0.575426 | 4:-87986783 | MsG0480023639.01.T01:CDS |
TTTGCTCCCTTAACATCAAG+AGG | 0.575576 | 4:-87986417 | MsG0480023639.01.T01:CDS |
TTTGGGGCTATCAATTCTCA+CGG | 0.577258 | 4:-87985685 | MsG0480023639.01.T01:three_prime_UTR |
TATCAGAAACCTTTGGTGAA+GGG | 0.577868 | 4:+87986867 | None:intergenic |
GTATCAGAAACCTTTGGTGA+AGG | 0.578981 | 4:+87986866 | None:intergenic |
CAATGTGGAAATCAAATTGG+AGG | 0.579577 | 4:-87988632 | MsG0480023639.01.T01:CDS |
GAGAATTGTGACTGCTTGCA+AGG | 0.582924 | 4:-87988291 | MsG0480023639.01.T01:intron |
GAGGTTATGTGTGATGAACA+TGG | 0.587045 | 4:-87988599 | MsG0480023639.01.T01:CDS |
TTGATATCAACAACAATGAG+TGG | 0.588382 | 4:-87986543 | MsG0480023639.01.T01:CDS |
GACATCGACAACCCTGTTGG+CGG | 0.590520 | 4:+87986156 | None:intergenic |
CCAAATTCACTATATTTGCA+GGG | 0.593039 | 4:+87985507 | None:intergenic |
GTGTGTTATTGGTAATGGCA+TGG | 0.599490 | 4:-87985796 | MsG0480023639.01.T01:three_prime_UTR |
GATGCTGCTGGAGTGGAAGA+AGG | 0.601710 | 4:-87985946 | MsG0480023639.01.T01:CDS |
TCTGATCTTGGAAATGAGCA+AGG | 0.607155 | 4:+87986931 | None:intergenic |
TTTCCTACATAACTTCCTGA+AGG | 0.607311 | 4:+87988569 | None:intergenic |
TGAAAATGCAGACGAATGCA+TGG | 0.615580 | 4:-87986798 | MsG0480023639.01.T01:CDS |
TTGGGGCTATCAATTCTCAC+GGG | 0.618332 | 4:-87985684 | MsG0480023639.01.T01:three_prime_UTR |
ATTATTAACATCAATTAACA+AGG | 0.621809 | 4:+87985593 | None:intergenic |
TGATCAATTTGTATAGTCGG+TGG | 0.621864 | 4:-87985565 | MsG0480023639.01.T01:three_prime_UTR |
TGGTAGGTATCTAACAGCCT+CGG | 0.636835 | 4:-87986304 | MsG0480023639.01.T01:CDS |
ACAGCCTCGGCAATGTTCCG+CGG | 0.640517 | 4:-87986291 | MsG0480023639.01.T01:CDS |
TGAGTTGGCCAGGAAATCGA+AGG | 0.641216 | 4:+87986508 | None:intergenic |
TTTGCCGCGGAACATTGCCG+AGG | 0.645424 | 4:+87986287 | None:intergenic |
GAAGACATCGACAACCCTGT+TGG | 0.646308 | 4:+87986153 | None:intergenic |
GCTAAAGGACATTACACTGA+AGG | 0.649556 | 4:-87988360 | MsG0480023639.01.T01:intron |
AGAACTCACACAGCAAATGT+GGG | 0.657245 | 4:-87986364 | MsG0480023639.01.T01:CDS |
CATGTACAAGCAGGTCAATG+TGG | 0.664189 | 4:-87988647 | MsG0480023639.01.T01:CDS |
AGGTTATGTGTGATGAACAT+GGG | 0.668105 | 4:-87988598 | MsG0480023639.01.T01:CDS |
TTTGTGATATTCCGCCAACA+GGG | 0.672464 | 4:-87986167 | MsG0480023639.01.T01:CDS |
TGCATTGTAGGGTTCCACCA+CGG | 0.684800 | 4:+87986844 | None:intergenic |
TACTACAATGAAGCAAGTGG+TGG | 0.685754 | 4:-87988515 | MsG0480023639.01.T01:CDS |
CTGCTGATCCAAGACATGGT+AGG | 0.688948 | 4:-87986320 | MsG0480023639.01.T01:CDS |
GTGTACTACAATGAAGCAAG+TGG | 0.690095 | 4:-87988518 | MsG0480023639.01.T01:CDS |
GGATGAGATGGAGTTTACTG+AGG | 0.703310 | 4:-87986016 | MsG0480023639.01.T01:CDS |
AAAGGTTTCTGATACCGTGG+TGG | 0.730334 | 4:-87986858 | MsG0480023639.01.T01:CDS |
TGTGCTGCTGATCCAAGACA+TGG | 0.750746 | 4:-87986324 | MsG0480023639.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAAATATTTTTTTATTTTTA+GGG | + | Chr4:87986660-87986679 | None:intergenic | 0.0% |
!!! | GTATATTCATTTTTTTAAAA+TGG | + | Chr4:87986235-87986254 | None:intergenic | 10.0% |
!! | AAAAAGTTTAAATAAGTATC+TGG | - | Chr4:87985987-87986006 | MsG0480023639.01.T01:CDS | 15.0% |
!! | ATTATTAACATCAATTAACA+AGG | + | Chr4:87988575-87988594 | None:intergenic | 15.0% |
!! | CTAAAAACAATATATTTATG+AGG | + | Chr4:87986022-87986041 | None:intergenic | 15.0% |
!!! | AGGTTAAATATTATTTTGTT+AGG | + | Chr4:87987026-87987045 | None:intergenic | 15.0% |
!!! | ATATTATTTTGTTAGGATTA+CGG | + | Chr4:87987019-87987038 | None:intergenic | 15.0% |
!!! | ATTTATTTTATTCTAGTTCT+TGG | - | Chr4:87986055-87986074 | MsG0480023639.01.T01:CDS | 15.0% |
!!! | ATTTTTTTAAAATGGGTAAA+AGG | + | Chr4:87986227-87986246 | None:intergenic | 15.0% |
!!! | TATTTTTTTATTTTTAGGGA+AGG | + | Chr4:87986656-87986675 | None:intergenic | 15.0% |
!! | AACTTAAGAACATAAAACAT+TGG | - | Chr4:87986865-87986884 | MsG0480023639.01.T01:CDS | 20.0% |
!! | ATATGATCAATTTGTATAGT+CGG | - | Chr4:87988597-87988616 | MsG0480023639.01.T01:CDS | 20.0% |
!! | CCAATATAATTAAATTTGCA+AGG | - | Chr4:87986393-87986412 | MsG0480023639.01.T01:CDS | 20.0% |
!! | CCTTGCAAATTTAATTATAT+TGG | + | Chr4:87986396-87986415 | None:intergenic | 20.0% |
!! | TACTCATATATATTATGAGT+TGG | - | Chr4:87988431-87988450 | MsG0480023639.01.T01:intron | 20.0% |
!!! | AACATTATTTAAGGTTCTTT+TGG | - | Chr4:87988297-87988316 | MsG0480023639.01.T01:CDS | 20.0% |
!!! | CATTTTATAATTATCATCGA+GGG | + | Chr4:87986171-87986190 | None:intergenic | 20.0% |
!!! | GGATTTTTTTTTTTTTTGAG+AGG | + | Chr4:87986919-87986938 | None:intergenic | 20.0% |
!!! | GTTCTTAAGTTATTTTTAGT+AGG | + | Chr4:87986856-87986875 | None:intergenic | 20.0% |
!!! | TCATTTTATAATTATCATCG+AGG | + | Chr4:87986172-87986191 | None:intergenic | 20.0% |
!!! | TTTTATTTTGAATCGTTTGT+TGG | - | Chr4:87988512-87988531 | MsG0480023639.01.T01:CDS | 20.0% |
! | AAAAAAAAAATCCTTTGCGT+TGG | - | Chr4:87986926-87986945 | MsG0480023639.01.T01:CDS | 25.0% |
! | ACCATTCTTGATATAAGTTA+AGG | + | Chr4:87987046-87987065 | None:intergenic | 25.0% |
! | ACCTTAACTTATATCAAGAA+TGG | - | Chr4:87987042-87987061 | MsG0480023639.01.T01:intron | 25.0% |
! | AGTAGTTCTTAAATCATAGT+TGG | - | Chr4:87986820-87986839 | MsG0480023639.01.T01:CDS | 25.0% |
! | ATGTAAACATAATGTTGATG+TGG | - | Chr4:87986725-87986744 | MsG0480023639.01.T01:intron | 25.0% |
! | ATTTATCTCACTTAAATTGG+AGG | - | Chr4:87986331-87986350 | MsG0480023639.01.T01:CDS | 25.0% |
! | CTTTGACACAACATTATTTA+AGG | - | Chr4:87988288-87988307 | MsG0480023639.01.T01:intron | 25.0% |
! | GTCATTTATCTCACTTAAAT+TGG | - | Chr4:87986328-87986347 | MsG0480023639.01.T01:CDS | 25.0% |
! | GTGAAGTGATGAATAAAATA+AGG | + | Chr4:87985905-87985924 | None:intergenic | 25.0% |
! | TACTGTTATGTTTAAGAGAA+AGG | - | Chr4:87988095-87988114 | MsG0480023639.01.T01:intron | 25.0% |
! | TGAGAGTAATATGAATGATT+TGG | - | Chr4:87988173-87988192 | MsG0480023639.01.T01:intron | 25.0% |
! | TGTGAAGGTTTCTTATAATA+AGG | + | Chr4:87986983-87987002 | None:intergenic | 25.0% |
! | TTTATCTCACTTAAATTGGA+GGG | - | Chr4:87986332-87986351 | MsG0480023639.01.T01:CDS | 25.0% |
!! | AAGTATGGATTAAACTTAGA+AGG | + | Chr4:87986614-87986633 | None:intergenic | 25.0% |
!! | AATATACACTGTTTTGCTTT+TGG | - | Chr4:87986248-87986267 | MsG0480023639.01.T01:CDS | 25.0% |
!! | ATTTGAACTTTGTACTTTTG+AGG | + | Chr4:87986148-87986167 | None:intergenic | 25.0% |
!! | ATTTTATTCATCACTTCACT+CGG | - | Chr4:87985906-87985925 | MsG0480023639.01.T01:exon | 25.0% |
!! | GTAAAAAGTACATAGGATTT+GGG | - | Chr4:87988463-87988482 | MsG0480023639.01.T01:intron | 25.0% |
!! | TAAAAAGTACATAGGATTTG+GGG | - | Chr4:87988464-87988483 | MsG0480023639.01.T01:intron | 25.0% |
!! | TCATTGTTGTTGATATCAAA+TGG | + | Chr4:87987621-87987640 | None:intergenic | 25.0% |
!! | TGCAAATGTAAAAAGTACAT+AGG | - | Chr4:87988456-87988475 | MsG0480023639.01.T01:intron | 25.0% |
!! | TGTAAAAAGTACATAGGATT+TGG | - | Chr4:87988462-87988481 | MsG0480023639.01.T01:intron | 25.0% |
!!! | ATGTGGCAGAATTTTTTTAA+AGG | + | Chr4:87986488-87986507 | None:intergenic | 25.0% |
!!! | TCAATCATGTTGTTTTGTTT+TGG | + | Chr4:87986420-87986439 | None:intergenic | 25.0% |
!!! | TTGTTTTGCATATGAATAGA+CGG | - | Chr4:87985957-87985976 | MsG0480023639.01.T01:CDS | 25.0% |
AAAATGGAGCTGGTAATAAT+TGG | - | Chr4:87985782-87985801 | MsG0480023639.01.T01:three_prime_UTR | 30.0% | |
AAAGTCAACATCATTCTATC+TGG | + | Chr4:87987269-87987288 | None:intergenic | 30.0% | |
AAATGGAGCTGGTAATAATT+GGG | - | Chr4:87985783-87985802 | MsG0480023639.01.T01:three_prime_UTR | 30.0% | |
AACCTTATGCTTTATGTGAA+TGG | - | Chr4:87987140-87987159 | MsG0480023639.01.T01:intron | 30.0% | |
AACTTTGTGTTTGGACAAAA+TGG | - | Chr4:87985766-87985785 | MsG0480023639.01.T01:three_prime_UTR | 30.0% | |
AATACATCGTTCTCTACATT+TGG | - | Chr4:87986080-87986099 | MsG0480023639.01.T01:CDS | 30.0% | |
AATCGAGGTTATATGTTTAG+TGG | - | Chr4:87986587-87986606 | MsG0480023639.01.T01:intron | 30.0% | |
ACACTTGATTTCACATTGTT+TGG | + | Chr4:87987979-87987998 | None:intergenic | 30.0% | |
ATGGTGACATGAACAAAATT+TGG | - | Chr4:87987061-87987080 | MsG0480023639.01.T01:intron | 30.0% | |
CATCTATTCAGGAAATGTTT+AGG | - | Chr4:87988055-87988074 | MsG0480023639.01.T01:intron | 30.0% | |
CCAAATTCACTATATTTGCA+GGG | + | Chr4:87988661-87988680 | None:intergenic | 30.0% | |
CCTGCAAATATAGTGAATTT+GGG | - | Chr4:87988659-87988678 | MsG0480023639.01.T01:CDS | 30.0% | |
GGTCCATTTGGAAAATATTT+AGG | - | Chr4:87985737-87985756 | MsG0480023639.01.T01:three_prime_UTR | 30.0% | |
GGTTAAATATGTTAGTGTGA+AGG | + | Chr4:87986998-87987017 | None:intergenic | 30.0% | |
GTGAACCTATTTAAATGACT+TGG | - | Chr4:87986756-87986775 | MsG0480023639.01.T01:CDS | 30.0% | |
TACAAACGACAGGAAAAATT+GGG | + | Chr4:87986685-87986704 | None:intergenic | 30.0% | |
TCGTGACTATGATTTAATCT+TGG | + | Chr4:87986549-87986568 | None:intergenic | 30.0% | |
TGATGAAAACACTTACAACT+TGG | + | Chr4:87987449-87987468 | None:intergenic | 30.0% | |
TTCCATTCACATAAAGCATA+AGG | + | Chr4:87987145-87987164 | None:intergenic | 30.0% | |
TTGATATCAACAACAATGAG+TGG | - | Chr4:87987622-87987641 | MsG0480023639.01.T01:intron | 30.0% | |
TTTCAAATTTGTCATTCGCT+TGG | - | Chr4:87987185-87987204 | MsG0480023639.01.T01:intron | 30.0% | |
! | ACATAAAGCATAAGGTTTTG+AGG | + | Chr4:87987137-87987156 | None:intergenic | 30.0% |
! | AGGCCTAAATATTTTCCAAA+TGG | + | Chr4:87985743-87985762 | None:intergenic | 30.0% |
! | ATCAAATTGGAGGAAAGTTT+TGG | - | Chr4:87985543-87985562 | MsG0480023639.01.T01:three_prime_UTR | 30.0% |
! | TCAAATTGGAGGAAAGTTTT+GGG | - | Chr4:87985544-87985563 | MsG0480023639.01.T01:three_prime_UTR | 30.0% |
! | TCTAGGCTAAAATATGCTTT+TGG | - | Chr4:87988634-87988653 | MsG0480023639.01.T01:CDS | 30.0% |
!! | AAATCATAGTTGGTAACTTG+TGG | - | Chr4:87986830-87986849 | MsG0480023639.01.T01:CDS | 30.0% |
!! | CACTGATACTCATTTTGAAA+CGG | - | Chr4:87987533-87987552 | MsG0480023639.01.T01:intron | 30.0% |
!! | TTGTTTGTTGTGTGTGTTAT+TGG | - | Chr4:87988358-87988377 | MsG0480023639.01.T01:intron | 30.0% |
!!! | TAAGGTTTTGAGGAAAGTTA+TGG | + | Chr4:87987127-87987146 | None:intergenic | 30.0% |
!!! | TTTTGTTGTTTTCATGCAGT+TGG | - | Chr4:87987586-87987605 | MsG0480023639.01.T01:intron | 30.0% |
AAAAAATGTAGACGTGGGAA+AGG | + | Chr4:87987718-87987737 | None:intergenic | 35.0% | |
AAAAATGTAGACGTGGGAAA+GGG | + | Chr4:87987717-87987736 | None:intergenic | 35.0% | |
AACATGATTGAGCAGCAAAA+CGG | - | Chr4:87986429-87986448 | MsG0480023639.01.T01:CDS | 35.0% | |
AATGGCATGGAGAAAAAAGA+AGG | - | Chr4:87988382-87988401 | MsG0480023639.01.T01:intron | 35.0% | |
ACCATGAAAAAATGTAGACG+TGG | + | Chr4:87987724-87987743 | None:intergenic | 35.0% | |
AGACTAATTGTACAAACGAC+AGG | + | Chr4:87986695-87986714 | None:intergenic | 35.0% | |
AGGTTATGTGTGATGAACAT+GGG | - | Chr4:87985567-87985586 | MsG0480023639.01.T01:three_prime_UTR | 35.0% | |
ATGGCATGGAGAAAAAAGAA+GGG | - | Chr4:87988383-87988402 | MsG0480023639.01.T01:intron | 35.0% | |
CAATGTGGAAATCAAATTGG+AGG | - | Chr4:87985533-87985552 | MsG0480023639.01.T01:three_prime_UTR | 35.0% | |
CCATGAAAAAATGTAGACGT+GGG | + | Chr4:87987723-87987742 | None:intergenic | 35.0% | |
CCCAAATTCACTATATTTGC+AGG | + | Chr4:87988662-87988681 | None:intergenic | 35.0% | |
CCCTGCAAATATAGTGAATT+TGG | - | Chr4:87988658-87988677 | MsG0480023639.01.T01:CDS | 35.0% | |
GGAAATTGTTTGATGTTGAC+AGG | - | Chr4:87987161-87987180 | MsG0480023639.01.T01:intron | 35.0% | |
GGAAGCCAAGTCATTTAAAT+AGG | + | Chr4:87986764-87986783 | None:intergenic | 35.0% | |
GGTCAATGTGGAAATCAAAT+TGG | - | Chr4:87985530-87985549 | MsG0480023639.01.T01:three_prime_UTR | 35.0% | |
GTACAAACGACAGGAAAAAT+TGG | + | Chr4:87986686-87986705 | None:intergenic | 35.0% | |
GTCATTTAAATAGGTTCACG+TGG | + | Chr4:87986755-87986774 | None:intergenic | 35.0% | |
TAAATAAGTATCTGGTCGTC+TGG | - | Chr4:87985995-87986014 | MsG0480023639.01.T01:CDS | 35.0% | |
TAATTAAATGTTGAGCCCTG+TGG | + | Chr4:87986796-87986815 | None:intergenic | 35.0% | |
TATCAGAAACCTTTGGTGAA+GGG | + | Chr4:87987301-87987320 | None:intergenic | 35.0% | |
TCGATGTCTTCGACATTTAT+GGG | - | Chr4:87988024-87988043 | MsG0480023639.01.T01:intron | 35.0% | |
TGAGAACCTCTTGATGTTAA+GGG | + | Chr4:87987757-87987776 | None:intergenic | 35.0% | |
TGATCAATTTGTATAGTCGG+TGG | - | Chr4:87988600-87988619 | MsG0480023639.01.T01:CDS | 35.0% | |
TGTCCAAACACAAAGTTATC+AGG | + | Chr4:87985763-87985782 | None:intergenic | 35.0% | |
TTGAGAACCTCTTGATGTTA+AGG | + | Chr4:87987758-87987777 | None:intergenic | 35.0% | |
TTGCAACATGGTTACAATTG+AGG | - | Chr4:87986517-87986536 | MsG0480023639.01.T01:CDS | 35.0% | |
TTGTAACCATGTTGCAACTT+AGG | + | Chr4:87986514-87986533 | None:intergenic | 35.0% | |
TTTCCTACATAACTTCCTGA+AGG | + | Chr4:87985599-87985618 | None:intergenic | 35.0% | |
TTTGGAAACATGCATACGTA+TGG | - | Chr4:87987079-87987098 | MsG0480023639.01.T01:intron | 35.0% | |
! | CGGTGGAATAGATATTTTCT+AGG | - | Chr4:87988617-87988636 | MsG0480023639.01.T01:CDS | 35.0% |
! | CTTTTGGATCATTCATGTCA+TGG | - | Chr4:87988313-87988332 | MsG0480023639.01.T01:CDS | 35.0% |
! | GTTGTGTGTGTTATTGGTAA+TGG | - | Chr4:87988364-87988383 | MsG0480023639.01.T01:intron | 35.0% |
!! | ATGCATGGTTCTTGATAATG+AGG | - | Chr4:87987382-87987401 | MsG0480023639.01.T01:intron | 35.0% |
!!! | AGAGAAAGGCATTTTTGCAT+TGG | - | Chr4:87988109-87988128 | MsG0480023639.01.T01:intron | 35.0% |
!!! | CGTCTACATTTTTTCATGGT+TGG | - | Chr4:87987724-87987743 | MsG0480023639.01.T01:intron | 35.0% |
!!! | GATACTCATTTTGAAACGGA+GGG | - | Chr4:87987537-87987556 | MsG0480023639.01.T01:intron | 35.0% |
!!! | TGATACTCATTTTGAAACGG+AGG | - | Chr4:87987536-87987555 | MsG0480023639.01.T01:intron | 35.0% |
AACAGAGAGAGTTGCATTGT+AGG | + | Chr4:87987336-87987355 | None:intergenic | 40.0% | |
ACAGAGAGAGTTGCATTGTA+GGG | + | Chr4:87987335-87987354 | None:intergenic | 40.0% | |
ACATCGTTCTCTACATTTGG+AGG | - | Chr4:87986083-87986102 | MsG0480023639.01.T01:CDS | 40.0% | |
ACATGATTGAGCAGCAAAAC+GGG | - | Chr4:87986430-87986449 | MsG0480023639.01.T01:CDS | 40.0% | |
ACTCGTCTTACTTTGTGGAA+TGG | - | Chr4:87987950-87987969 | MsG0480023639.01.T01:intron | 40.0% | |
AGAACTCACACAGCAAATGT+GGG | - | Chr4:87987801-87987820 | MsG0480023639.01.T01:intron | 40.0% | |
AGAAGGTGAGTTTGATGAAG+AGG | - | Chr4:87988236-87988255 | MsG0480023639.01.T01:intron | 40.0% | |
AGGCCTGATAACTTTGTGTT+TGG | - | Chr4:87985757-87985776 | MsG0480023639.01.T01:three_prime_UTR | 40.0% | |
ATAGTCACGATCGTTGCATA+CGG | - | Chr4:87986559-87986578 | MsG0480023639.01.T01:CDS | 40.0% | |
ATTGACCTGCTTGTACATGA+AGG | + | Chr4:87985517-87985536 | None:intergenic | 40.0% | |
CAAATTTGTCATTCGCTTGG+AGG | - | Chr4:87987188-87987207 | MsG0480023639.01.T01:intron | 40.0% | |
CAAGAACTCGTCTTACTTTG+TGG | - | Chr4:87987945-87987964 | MsG0480023639.01.T01:intron | 40.0% | |
CATAGACCTAAGTTGCAACA+TGG | - | Chr4:87986505-87986524 | MsG0480023639.01.T01:CDS | 40.0% | |
CGATGTCTTCGACATTTATG+GGG | - | Chr4:87988025-87988044 | MsG0480023639.01.T01:intron | 40.0% | |
GAAATCCTTCATGTACAAGC+AGG | - | Chr4:87985509-87985528 | MsG0480023639.01.T01:three_prime_UTR | 40.0% | |
GAGGTTATGTGTGATGAACA+TGG | - | Chr4:87985566-87985585 | MsG0480023639.01.T01:three_prime_UTR | 40.0% | |
GATCCTTCAGGAAGTTATGT+AGG | - | Chr4:87985593-87985612 | MsG0480023639.01.T01:three_prime_UTR | 40.0% | |
GCTAAAGGACATTACACTGA+AGG | - | Chr4:87985805-87985824 | MsG0480023639.01.T01:three_prime_UTR | 40.0% | |
GCTGGTAATAATTGGGCTAA+AGG | - | Chr4:87985790-87985809 | MsG0480023639.01.T01:three_prime_UTR | 40.0% | |
GGAAATGTTTAGGCGTGTTT+CGG | - | Chr4:87988065-87988084 | MsG0480023639.01.T01:intron | 40.0% | |
GTATCAGAAACCTTTGGTGA+AGG | + | Chr4:87987302-87987321 | None:intergenic | 40.0% | |
GTCGATGTCTTCGACATTTA+TGG | - | Chr4:87988023-87988042 | MsG0480023639.01.T01:intron | 40.0% | |
GTGTACTACAATGAAGCAAG+TGG | - | Chr4:87985647-87985666 | MsG0480023639.01.T01:three_prime_UTR | 40.0% | |
GTGTCAAAGTCATTGCAACT+AGG | + | Chr4:87988277-87988296 | None:intergenic | 40.0% | |
GTTAGATACCTACCATGTCT+TGG | + | Chr4:87987856-87987875 | None:intergenic | 40.0% | |
GTTTGATGAAGAGGATGAAG+AGG | - | Chr4:87988245-87988264 | MsG0480023639.01.T01:intron | 40.0% | |
TACTACAATGAAGCAAGTGG+TGG | - | Chr4:87985650-87985669 | MsG0480023639.01.T01:three_prime_UTR | 40.0% | |
TCCTAAGATCAGAGTTGAGT+TGG | + | Chr4:87987675-87987694 | None:intergenic | 40.0% | |
TCTGATCTTGGAAATGAGCA+AGG | + | Chr4:87987237-87987256 | None:intergenic | 40.0% | |
TGAAAATGCAGACGAATGCA+TGG | - | Chr4:87987367-87987386 | MsG0480023639.01.T01:intron | 40.0% | |
TGGATACTCTTCTCTGATCT+TGG | + | Chr4:87987249-87987268 | None:intergenic | 40.0% | |
TGTTCCTAGAGCTGTTCTAA+TGG | - | Chr4:87985679-87985698 | MsG0480023639.01.T01:three_prime_UTR | 40.0% | |
TGTTGCAACTTAGGTCTATG+TGG | + | Chr4:87986505-87986524 | None:intergenic | 40.0% | |
TTCTCTACATTTGGAGGTGA+TGG | - | Chr4:87986089-87986108 | MsG0480023639.01.T01:CDS | 40.0% | |
TTGAGAGGTCTAATGCAAGA+AGG | + | Chr4:87986904-87986923 | None:intergenic | 40.0% | |
TTGGTATACTGCTGAAGGTA+TGG | - | Chr4:87988128-87988147 | MsG0480023639.01.T01:intron | 40.0% | |
TTTGCTCCCTTAACATCAAG+AGG | - | Chr4:87987748-87987767 | MsG0480023639.01.T01:intron | 40.0% | |
TTTGTGATATTCCGCCAACA+GGG | - | Chr4:87987998-87988017 | MsG0480023639.01.T01:intron | 40.0% | |
! | AGGTGATGGTGATAACTTAG+TGG | - | Chr4:87986103-87986122 | MsG0480023639.01.T01:CDS | 40.0% |
! | TAAATGACTTGGCTTCCATG+TGG | - | Chr4:87986767-87986786 | MsG0480023639.01.T01:CDS | 40.0% |
! | TTGCATTGGTATACTGCTGA+AGG | - | Chr4:87988123-87988142 | MsG0480023639.01.T01:intron | 40.0% |
! | TTTGCGTTGGAGATGCTTTT+TGG | - | Chr4:87986939-87986958 | MsG0480023639.01.T01:CDS | 40.0% |
! | TTTGGGGCTATCAATTCTCA+CGG | - | Chr4:87988480-87988499 | MsG0480023639.01.T01:CDS | 40.0% |
!! | AAAAAGCATCTCCAACGCAA+AGG | + | Chr4:87986940-87986959 | None:intergenic | 40.0% |
!! | CATTCACTCTCTCAAGTTGA+AGG | + | Chr4:87985628-87985647 | None:intergenic | 40.0% |
!! | GTGTGTTATTGGTAATGGCA+TGG | - | Chr4:87988369-87988388 | MsG0480023639.01.T01:intron | 40.0% |
!!! | AATTGGAGGAAAGTTTTGGG+AGG | - | Chr4:87985547-87985566 | MsG0480023639.01.T01:three_prime_UTR | 40.0% |
!!! | CCCACGTCTACATTTTTTCA+TGG | - | Chr4:87987720-87987739 | MsG0480023639.01.T01:intron | 40.0% |
AAAGGTTTCTGATACCGTGG+TGG | - | Chr4:87987307-87987326 | MsG0480023639.01.T01:intron | 45.0% | |
ACATGTTGCCTTCGATTTCC+TGG | - | Chr4:87987649-87987668 | MsG0480023639.01.T01:intron | 45.0% | |
ACCAAAGGTTTCTGATACCG+TGG | - | Chr4:87987304-87987323 | MsG0480023639.01.T01:intron | 45.0% | |
ACCACGGTATCAGAAACCTT+TGG | + | Chr4:87987308-87987327 | None:intergenic | 45.0% | |
AGGTCCATTAGAACAGCTCT+AGG | + | Chr4:87985686-87985705 | None:intergenic | 45.0% | |
AGTTTGCGTTCTGGTCCATT+TGG | - | Chr4:87985725-87985744 | MsG0480023639.01.T01:three_prime_UTR | 45.0% | |
ATATCAAGATGCTGCTGGAG+TGG | - | Chr4:87988212-87988231 | MsG0480023639.01.T01:intron | 45.0% | |
ATTTGTCATTCGCTTGGAGG+TGG | - | Chr4:87987191-87987210 | MsG0480023639.01.T01:intron | 45.0% | |
CAGAACTCACACAGCAAATG+TGG | - | Chr4:87987800-87987819 | MsG0480023639.01.T01:intron | 45.0% | |
CAGCAATATCAAGATGCTGC+TGG | - | Chr4:87988207-87988226 | MsG0480023639.01.T01:intron | 45.0% | |
CATGATTGAGCAGCAAAACG+GGG | - | Chr4:87986431-87986450 | MsG0480023639.01.T01:CDS | 45.0% | |
CATGTACAAGCAGGTCAATG+TGG | - | Chr4:87985518-87985537 | MsG0480023639.01.T01:three_prime_UTR | 45.0% | |
GAACATGGGATAGATCCTTC+AGG | - | Chr4:87985581-87985600 | MsG0480023639.01.T01:three_prime_UTR | 45.0% | |
GAGAATTGTGACTGCTTGCA+AGG | - | Chr4:87985874-87985893 | MsG0480023639.01.T01:three_prime_UTR | 45.0% | |
GCCAACTCAACTCTGATCTT+AGG | - | Chr4:87987671-87987690 | MsG0480023639.01.T01:intron | 45.0% | |
GGATGAGATGGAGTTTACTG+AGG | - | Chr4:87988149-87988168 | MsG0480023639.01.T01:intron | 45.0% | |
GGGGAATTCGACATCTATTC+AGG | - | Chr4:87988044-87988063 | MsG0480023639.01.T01:intron | 45.0% | |
GTGTTTGGACAAAATGGAGC+TGG | - | Chr4:87985772-87985791 | MsG0480023639.01.T01:three_prime_UTR | 45.0% | |
GTTTGTGATATTCCGCCAAC+AGG | - | Chr4:87987997-87988016 | MsG0480023639.01.T01:intron | 45.0% | |
TCATCACTTCACTCGGTTCT+TGG | - | Chr4:87985913-87985932 | MsG0480023639.01.T01:CDS | 45.0% | |
TGGTAGGTATCTAACAGCCT+CGG | - | Chr4:87987861-87987880 | MsG0480023639.01.T01:intron | 45.0% | |
TTGCATACGGTAGAGAATCG+AGG | - | Chr4:87986572-87986591 | MsG0480023639.01.T01:intron | 45.0% | |
TTGGGGCTATCAATTCTCAC+GGG | - | Chr4:87988481-87988500 | MsG0480023639.01.T01:CDS | 45.0% | |
! | CATGCATACGTATGGTGTCA+TGG | - | Chr4:87987087-87987106 | MsG0480023639.01.T01:intron | 45.0% |
! | CTTTTGTGCTCATTTTGCCG+CGG | + | Chr4:87987894-87987913 | None:intergenic | 45.0% |
! | GTTCTAATGGACCTTGAACC+AGG | - | Chr4:87985692-87985711 | MsG0480023639.01.T01:three_prime_UTR | 45.0% |
! | TGCTGAAGGTATGGATGAGA+TGG | - | Chr4:87988137-87988156 | MsG0480023639.01.T01:intron | 45.0% |
!! | CACATTTGCTGTGTGAGTTC+TGG | + | Chr4:87987802-87987821 | None:intergenic | 45.0% |
!! | AATATTTATTAATTTAAGTA+TGG | + | Chr4:87986629-87986648 | None:intergenic | 5.0% |
!!! | CTAAATATTTTTTTATTTTT+AGG | + | Chr4:87986661-87986680 | None:intergenic | 5.0% |
!!! | TATATTCATTTTTTTAAAAT+GGG | + | Chr4:87986234-87986253 | None:intergenic | 5.0% |
ACCAGAACGCAAACTGTCCA+TGG | + | Chr4:87985720-87985739 | None:intergenic | 50.0% | |
ACCATGGACAGTTTGCGTTC+TGG | - | Chr4:87985716-87985735 | MsG0480023639.01.T01:three_prime_UTR | 50.0% | |
AGGTGGAACTGGATCAGGAA+TGG | - | Chr4:87987208-87987227 | MsG0480023639.01.T01:intron | 50.0% | |
CTCAGTGTTCCCTTCACCAA+AGG | - | Chr4:87987289-87987308 | MsG0480023639.01.T01:intron | 50.0% | |
CTGCTGATCCAAGACATGGT+AGG | - | Chr4:87987845-87987864 | MsG0480023639.01.T01:intron | 50.0% | |
GAAGACATCGACAACCCTGT+TGG | + | Chr4:87988015-87988034 | None:intergenic | 50.0% | |
GGTGGAACTGGATCAGGAAT+GGG | - | Chr4:87987209-87987228 | MsG0480023639.01.T01:intron | 50.0% | |
TGCATTGTAGGGTTCCACCA+CGG | + | Chr4:87987324-87987343 | None:intergenic | 50.0% | |
TGTCCATGGTACCTGGTTCA+AGG | + | Chr4:87985706-87985725 | None:intergenic | 50.0% | |
! | TGAGTTGGCCAGGAAATCGA+AGG | + | Chr4:87987660-87987679 | None:intergenic | 50.0% |
! | TGTGCTGCTGATCCAAGACA+TGG | - | Chr4:87987841-87987860 | MsG0480023639.01.T01:intron | 50.0% |
!! | AGATCAGAGTTGAGTTGGCC+AGG | + | Chr4:87987670-87987689 | None:intergenic | 50.0% |
CATTCGCTTGGAGGTGGAAC+TGG | - | Chr4:87987197-87987216 | MsG0480023639.01.T01:intron | 55.0% | |
CGCAAACTGTCCATGGTACC+TGG | + | Chr4:87985713-87985732 | None:intergenic | 55.0% | |
CTTGGAGGTGGAACTGGATC+AGG | - | Chr4:87987203-87987222 | MsG0480023639.01.T01:intron | 55.0% | |
GACATCGACAACCCTGTTGG+CGG | + | Chr4:87988012-87988031 | None:intergenic | 55.0% | |
GATGCTGCTGGAGTGGAAGA+AGG | - | Chr4:87988219-87988238 | MsG0480023639.01.T01:intron | 55.0% | |
GCTTCCATGTGGAAGCCACA+GGG | - | Chr4:87986778-87986797 | MsG0480023639.01.T01:CDS | 55.0% | |
GGACCTTGAACCAGGTACCA+TGG | - | Chr4:87985700-87985719 | MsG0480023639.01.T01:three_prime_UTR | 55.0% | |
GTAGACGTGGGAAAGGGATG+AGG | + | Chr4:87987711-87987730 | None:intergenic | 55.0% | |
ACAGCCTCGGCAATGTTCCG+CGG | - | Chr4:87987874-87987893 | MsG0480023639.01.T01:intron | 60.0% | |
GGCTTCCATGTGGAAGCCAC+AGG | - | Chr4:87986777-87986796 | MsG0480023639.01.T01:CDS | 60.0% | |
TGAGCCCTGTGGCTTCCACA+TGG | + | Chr4:87986785-87986804 | None:intergenic | 60.0% | |
TTTGCCGCGGAACATTGCCG+AGG | + | Chr4:87987881-87987900 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr4 | gene | 87985503 | 87988684 | 87985503 | ID=MsG0480023639.01;Name=MsG0480023639.01 |
Chr4 | mRNA | 87985503 | 87988684 | 87985503 | ID=MsG0480023639.01.T01;Parent=MsG0480023639.01;Name=MsG0480023639.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0.66|0.5|1|1|1|4|406|412 |
Chr4 | exon | 87985503 | 87986582 | 87985503 | ID=MsG0480023639.01.T01:exon:6400;Parent=MsG0480023639.01.T01 |
Chr4 | exon | 87986735 | 87987004 | 87986735 | ID=MsG0480023639.01.T01:exon:6399;Parent=MsG0480023639.01.T01 |
Chr4 | exon | 87988292 | 87988375 | 87988292 | ID=MsG0480023639.01.T01:exon:6398;Parent=MsG0480023639.01.T01 |
Chr4 | exon | 87988474 | 87988684 | 87988474 | ID=MsG0480023639.01.T01:exon:6397;Parent=MsG0480023639.01.T01 |
Chr4 | CDS | 87988474 | 87988684 | 87988474 | ID=MsG0480023639.01.T01:cds;Parent=MsG0480023639.01.T01 |
Chr4 | CDS | 87988292 | 87988375 | 87988292 | ID=MsG0480023639.01.T01:cds;Parent=MsG0480023639.01.T01 |
Chr4 | CDS | 87986735 | 87987004 | 87986735 | ID=MsG0480023639.01.T01:cds;Parent=MsG0480023639.01.T01 |
Chr4 | CDS | 87985909 | 87986582 | 87985909 | ID=MsG0480023639.01.T01:cds;Parent=MsG0480023639.01.T01 |
Chr4 | three_prime_UTR | 87985503 | 87985908 | 87985503 | ID=MsG0480023639.01.T01:three_prime_utr;Parent=MsG0480023639.01.T01 |
Gene Sequence |
Protein sequence |