Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000185.01.T01 | XP_013466045.1 | 99.262 | 271 | 2 | 0 | 1 | 271 | 97 | 367 | 0 | 561 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000185.01.T01 | Q9S7G2 | 76.838 | 272 | 59 | 3 | 1 | 269 | 68 | 338 | 2.72E-154 | 436 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000185.01.T01 | A0A072VDI5 | 99.262 | 271 | 2 | 0 | 1 | 271 | 97 | 367 | 0.0 | 561 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000185.01 | MsG0180005188.01 | 0.868883 | 4.687538e-66 | 1.723538e-62 |
| MsG0180000185.01 | MsG0180005189.01 | 0.866125 | 3.583311e-65 | 1.194520e-61 |
| MsG0180000185.01 | MsG0280006922.01 | 0.800496 | 1.402703e-48 | 6.540890e-46 |
| MsG0180000185.01 | MsG0280010263.01 | 0.829580 | 4.753355e-55 | 4.885089e-52 |
| MsG0180000185.01 | MsG0380015548.01 | 0.817595 | 3.039043e-52 | 2.222718e-49 |
| MsG0180000185.01 | MsG0380017240.01 | 0.812944 | 3.285100e-51 | 2.116664e-48 |
| MsG0180000185.01 | MsG0480020401.01 | 0.841962 | 3.456145e-58 | 5.162079e-55 |
| MsG0180000185.01 | MsG0480022331.01 | 0.831249 | 1.857720e-55 | 2.004471e-52 |
| MsG0180000185.01 | MsG0480022738.01 | 0.811320 | 7.428026e-51 | 4.583447e-48 |
| MsG0180000185.01 | MsG0480023620.01 | 0.814144 | 1.788757e-51 | 1.190716e-48 |
| MsG0180000185.01 | MsG0580029251.01 | 0.844049 | 9.615836e-59 | 1.533788e-55 |
| MsG0180000185.01 | MsG0580029298.01 | 0.802669 | 5.027546e-49 | 2.477235e-46 |
| MsG0180000185.01 | MsG0780040542.01 | 0.800613 | 1.327667e-48 | 6.209402e-46 |
| MsG0180000185.01 | MsG0780040564.01 | 0.838850 | 2.250734e-57 | 3.052645e-54 |
| MsG0180000185.01 | MsG0780041756.01 | 0.811979 | 5.339450e-51 | 3.352951e-48 |
| MsG0180000185.01 | MsG0880042845.01 | 0.851169 | 1.057419e-60 | 2.121540e-57 |
| MsG0180000185.01 | MsG0880044803.01 | 0.824152 | 9.422321e-54 | 8.278229e-51 |
| MsG0180000185.01 | MsG0880047478.01 | 0.814272 | 1.676719e-51 | 1.120009e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000185.01.T01 | MTR_1g021855 | 99.262 | 271 | 2 | 0 | 1 | 271 | 97 | 367 | 0.0 | 561 |
| MsG0180000185.01.T01 | MTR_3g111600 | 85.978 | 271 | 37 | 1 | 1 | 271 | 12 | 281 | 6.69e-177 | 488 |
| MsG0180000185.01.T01 | MTR_5g019220 | 79.636 | 275 | 51 | 2 | 1 | 271 | 94 | 367 | 4.65e-164 | 459 |
| MsG0180000185.01.T01 | MTR_8g078240 | 78.309 | 272 | 56 | 2 | 1 | 270 | 74 | 344 | 2.46e-163 | 457 |
| MsG0180000185.01.T01 | MTR_3g092310 | 66.792 | 265 | 84 | 2 | 2 | 264 | 71 | 333 | 3.79e-134 | 383 |
| MsG0180000185.01.T01 | MTR_7g094230 | 64.015 | 264 | 93 | 1 | 1 | 264 | 83 | 344 | 8.18e-127 | 364 |
| MsG0180000185.01.T01 | MTR_7g109210 | 63.359 | 262 | 92 | 2 | 1 | 262 | 93 | 350 | 3.97e-126 | 363 |
| MsG0180000185.01.T01 | MTR_4g118030 | 62.406 | 266 | 97 | 2 | 1 | 265 | 77 | 340 | 5.85e-124 | 357 |
| MsG0180000185.01.T01 | MTR_5g036580 | 62.313 | 268 | 96 | 2 | 1 | 264 | 94 | 360 | 1.27e-123 | 358 |
| MsG0180000185.01.T01 | MTR_6g008900 | 61.940 | 268 | 95 | 3 | 1 | 262 | 93 | 359 | 2.00e-121 | 351 |
| MsG0180000185.01.T01 | MTR_4g071620 | 61.940 | 268 | 95 | 3 | 1 | 262 | 93 | 359 | 2.00e-121 | 351 |
| MsG0180000185.01.T01 | MTR_1g089820 | 63.740 | 262 | 93 | 1 | 1 | 262 | 86 | 345 | 2.55e-121 | 350 |
| MsG0180000185.01.T01 | MTR_2g461670 | 32.642 | 193 | 118 | 6 | 69 | 260 | 395 | 576 | 2.69e-21 | 93.6 |
| MsG0180000185.01.T01 | MTR_4g109890 | 33.161 | 193 | 117 | 6 | 69 | 260 | 340 | 521 | 1.77e-20 | 90.9 |
| MsG0180000185.01.T01 | MTR_3g107930 | 27.843 | 255 | 171 | 8 | 15 | 267 | 337 | 580 | 2.90e-19 | 87.4 |
| MsG0180000185.01.T01 | MTR_3g107930 | 27.843 | 255 | 171 | 8 | 15 | 267 | 414 | 657 | 3.38e-19 | 87.4 |
| MsG0180000185.01.T01 | MTR_2g082650 | 30.151 | 199 | 122 | 8 | 69 | 260 | 209 | 397 | 2.19e-18 | 84.3 |
| MsG0180000185.01.T01 | MTR_2g082650 | 30.151 | 199 | 122 | 8 | 69 | 260 | 338 | 526 | 5.17e-18 | 84.0 |
| MsG0180000185.01.T01 | MTR_2g015550 | 31.351 | 185 | 119 | 5 | 69 | 253 | 339 | 515 | 6.00e-18 | 83.6 |
| MsG0180000185.01.T01 | MTR_8g092000 | 29.444 | 180 | 114 | 5 | 69 | 245 | 384 | 553 | 1.28e-17 | 82.8 |
| MsG0180000185.01.T01 | MTR_7g055600 | 28.643 | 199 | 132 | 6 | 69 | 267 | 238 | 426 | 3.06e-16 | 78.2 |
| MsG0180000185.01.T01 | MTR_7g057530 | 28.643 | 199 | 132 | 6 | 69 | 267 | 238 | 426 | 3.06e-16 | 78.2 |
| MsG0180000185.01.T01 | MTR_7g012370 | 28.571 | 182 | 116 | 6 | 69 | 243 | 334 | 508 | 6.38e-16 | 77.8 |
| MsG0180000185.01.T01 | MTR_7g075840 | 27.136 | 199 | 135 | 5 | 69 | 267 | 468 | 656 | 6.72e-16 | 77.8 |
| MsG0180000185.01.T01 | MTR_2g027740 | 29.444 | 180 | 114 | 5 | 69 | 245 | 471 | 640 | 7.17e-16 | 77.8 |
| MsG0180000185.01.T01 | MTR_4g133570 | 29.648 | 199 | 123 | 8 | 69 | 260 | 261 | 449 | 9.06e-16 | 77.0 |
| MsG0180000185.01.T01 | MTR_6g016380 | 28.646 | 192 | 127 | 6 | 69 | 260 | 359 | 540 | 1.06e-14 | 73.9 |
| MsG0180000185.01.T01 | MTR_3g452360 | 22.185 | 302 | 176 | 10 | 4 | 260 | 79 | 366 | 1.21e-14 | 73.6 |
| MsG0180000185.01.T01 | MTR_8g033360 | 30.137 | 146 | 98 | 3 | 69 | 214 | 437 | 578 | 1.71e-14 | 73.6 |
| MsG0180000185.01.T01 | MTR_3g452360 | 22.185 | 302 | 176 | 10 | 4 | 260 | 228 | 515 | 1.97e-14 | 73.2 |
| MsG0180000185.01.T01 | MTR_7g096160 | 27.957 | 186 | 124 | 7 | 67 | 249 | 453 | 631 | 8.44e-13 | 68.6 |
| MsG0180000185.01.T01 | MTR_6g013840 | 28.947 | 114 | 73 | 3 | 149 | 260 | 410 | 517 | 1.61e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000185.01.T01 | AT3G50760 | 76.838 | 272 | 59 | 3 | 1 | 269 | 68 | 338 | 2.77e-155 | 436 |
| MsG0180000185.01.T01 | AT1G19300 | 80.220 | 273 | 51 | 2 | 1 | 271 | 80 | 351 | 1.12e-153 | 432 |
| MsG0180000185.01.T01 | AT4G02130 | 66.038 | 265 | 87 | 2 | 1 | 264 | 81 | 343 | 3.65e-134 | 383 |
| MsG0180000185.01.T01 | AT4G02130 | 66.038 | 265 | 87 | 2 | 1 | 264 | 81 | 343 | 3.65e-134 | 383 |
| MsG0180000185.01.T01 | AT4G02130 | 66.038 | 265 | 87 | 2 | 1 | 264 | 81 | 343 | 3.65e-134 | 383 |
| MsG0180000185.01.T01 | AT3G62660 | 67.939 | 262 | 80 | 2 | 1 | 262 | 98 | 355 | 2.86e-132 | 379 |
| MsG0180000185.01.T01 | AT3G06260 | 62.406 | 266 | 97 | 2 | 1 | 265 | 81 | 344 | 1.15e-125 | 362 |
| MsG0180000185.01.T01 | AT1G02720 | 62.642 | 265 | 96 | 2 | 1 | 264 | 96 | 358 | 2.32e-124 | 358 |
| MsG0180000185.01.T01 | AT1G02720 | 62.642 | 265 | 96 | 2 | 1 | 264 | 96 | 358 | 2.32e-124 | 358 |
| MsG0180000185.01.T01 | AT3G28340 | 61.798 | 267 | 99 | 3 | 1 | 265 | 86 | 351 | 2.86e-124 | 358 |
| MsG0180000185.01.T01 | AT1G24170 | 61.567 | 268 | 98 | 2 | 1 | 264 | 100 | 366 | 9.19e-124 | 358 |
| MsG0180000185.01.T01 | AT1G13250 | 64.103 | 273 | 94 | 3 | 1 | 271 | 75 | 345 | 3.29e-123 | 355 |
| MsG0180000185.01.T01 | AT1G70090 | 60.075 | 268 | 102 | 2 | 1 | 264 | 97 | 363 | 2.98e-122 | 354 |
| MsG0180000185.01.T01 | AT1G70090 | 60.075 | 268 | 102 | 2 | 1 | 264 | 97 | 363 | 2.98e-122 | 354 |
| MsG0180000185.01.T01 | AT1G18580 | 32.258 | 186 | 117 | 5 | 69 | 253 | 342 | 519 | 3.36e-21 | 93.2 |
| MsG0180000185.01.T01 | AT5G47780 | 31.667 | 180 | 110 | 5 | 69 | 245 | 420 | 589 | 1.16e-19 | 89.0 |
| MsG0180000185.01.T01 | AT5G54690 | 28.054 | 221 | 142 | 8 | 47 | 260 | 309 | 519 | 4.79e-19 | 87.0 |
| MsG0180000185.01.T01 | AT3G61130 | 30.198 | 202 | 125 | 7 | 69 | 267 | 477 | 665 | 5.14e-18 | 84.0 |
| MsG0180000185.01.T01 | AT4G38270 | 27.869 | 244 | 167 | 6 | 19 | 261 | 434 | 669 | 1.94e-17 | 82.4 |
| MsG0180000185.01.T01 | AT4G38270 | 27.869 | 244 | 167 | 6 | 19 | 261 | 430 | 665 | 2.01e-17 | 82.4 |
| MsG0180000185.01.T01 | AT3G01040 | 24.427 | 262 | 173 | 9 | 14 | 260 | 233 | 484 | 3.72e-17 | 81.3 |
| MsG0180000185.01.T01 | AT3G25140 | 29.000 | 200 | 123 | 5 | 69 | 262 | 363 | 549 | 6.25e-17 | 80.9 |
| MsG0180000185.01.T01 | AT3G58790 | 30.000 | 200 | 122 | 8 | 69 | 260 | 204 | 393 | 8.98e-17 | 79.7 |
| MsG0180000185.01.T01 | AT3G58790 | 30.000 | 200 | 122 | 8 | 69 | 260 | 336 | 525 | 1.13e-16 | 80.1 |
| MsG0180000185.01.T01 | AT3G01040 | 27.136 | 199 | 128 | 7 | 69 | 260 | 329 | 517 | 1.15e-16 | 79.7 |
| MsG0180000185.01.T01 | AT3G01040 | 27.136 | 199 | 128 | 7 | 69 | 260 | 329 | 517 | 1.15e-16 | 79.7 |
| MsG0180000185.01.T01 | AT1G06780 | 27.953 | 254 | 156 | 9 | 6 | 243 | 331 | 573 | 3.78e-16 | 78.6 |
| MsG0180000185.01.T01 | AT1G06780 | 27.953 | 254 | 156 | 9 | 6 | 243 | 318 | 560 | 3.99e-16 | 78.2 |
| MsG0180000185.01.T01 | AT2G30575 | 28.077 | 260 | 160 | 12 | 6 | 249 | 339 | 587 | 5.03e-16 | 78.2 |
| MsG0180000185.01.T01 | AT5G15470 | 25.628 | 199 | 131 | 7 | 69 | 260 | 329 | 517 | 4.43e-15 | 75.1 |
| MsG0180000185.01.T01 | AT2G46480 | 25.896 | 251 | 172 | 9 | 19 | 267 | 294 | 532 | 1.21e-13 | 70.9 |
| MsG0180000185.01.T01 | AT2G46480 | 25.896 | 251 | 172 | 9 | 19 | 267 | 307 | 545 | 1.26e-13 | 70.9 |
| MsG0180000185.01.T01 | AT2G20810 | 32.663 | 199 | 123 | 7 | 69 | 267 | 342 | 529 | 3.42e-13 | 69.7 |
| MsG0180000185.01.T01 | AT3G02350 | 29.167 | 192 | 126 | 6 | 69 | 260 | 365 | 546 | 8.72e-12 | 65.5 |
Find 56 sgRNAs with CRISPR-Local
Find 69 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGTCCTTTGGATGCTCTT+TGG | 0.179612 | 1:+2597230 | MsG0180000185.01.T01:CDS |
| TTGTCCTTTGGATGCTCTTT+GGG | 0.232558 | 1:+2597231 | MsG0180000185.01.T01:CDS |
| TTCGATGATTCAATCGTTTC+GGG | 0.244627 | 1:+2596623 | MsG0180000185.01.T01:CDS |
| CAATTATGCAAGAAGCTATT+TGG | 0.253341 | 1:+2596688 | MsG0180000185.01.T01:CDS |
| TTTACTTCACACCAACATTT+TGG | 0.256817 | 1:+2596861 | MsG0180000185.01.T01:CDS |
| AATCAAGAATCAAGAGAAAA+TGG | 0.308067 | 1:-2597277 | None:intergenic |
| TTACTTTAATACCGGGGTTA+TGG | 0.328231 | 1:+2596928 | MsG0180000185.01.T01:CDS |
| TTTCGATGATTCAATCGTTT+CGG | 0.340870 | 1:+2596622 | MsG0180000185.01.T01:CDS |
| TGCTAATAGACCTTGTCCTT+TGG | 0.372206 | 1:+2597219 | MsG0180000185.01.T01:CDS |
| AAACCTTGTTACTTTAATAC+CGG | 0.397438 | 1:+2596920 | MsG0180000185.01.T01:CDS |
| TTGTTCCTGTGGATCATAGA+TGG | 0.412121 | 1:+2597083 | MsG0180000185.01.T01:CDS |
| GTCCAGTGAGTTTATTGCAT+TGG | 0.440935 | 1:+2597164 | MsG0180000185.01.T01:CDS |
| TGCAATAAACTCACTGGACC+TGG | 0.441630 | 1:-2597160 | None:intergenic |
| AATTGTAGACTTGGAATTTG+AGG | 0.447752 | 1:-2596601 | None:intergenic |
| AGGTAAACCATGGGTGAGAT+TGG | 0.454495 | 1:+2597195 | MsG0180000185.01.T01:CDS |
| GCGAATGTTAAAGACAAAGA+TGG | 0.456493 | 1:-2596890 | None:intergenic |
| TTATTGCATTGGAGTGGAAA+AGG | 0.458081 | 1:+2597175 | MsG0180000185.01.T01:CDS |
| TGTAAGAAAAGTTGTGTACT+TGG | 0.460356 | 1:+2596730 | MsG0180000185.01.T01:CDS |
| GACAGAGAGGATTGCAGCCA+TGG | 0.467068 | 1:-2596480 | None:intergenic |
| GGTGTCTGCAAAAGATCATA+AGG | 0.476961 | 1:-2597256 | None:intergenic |
| AGATGGAATCAACATGGTCT+TGG | 0.481062 | 1:+2597100 | MsG0180000185.01.T01:CDS |
| TGCAGGGGAAATTGTTCCTG+TGG | 0.488544 | 1:+2597072 | MsG0180000185.01.T01:CDS |
| AATCATCGAAATTGTAGACT+TGG | 0.491592 | 1:-2596610 | None:intergenic |
| TAGACTTGGAATTTGAGGTA+AGG | 0.496272 | 1:-2596596 | None:intergenic |
| AACCTTGTTACTTTAATACC+GGG | 0.498666 | 1:+2596921 | MsG0180000185.01.T01:CDS |
| CTTTGTCGAGATCTTCATCC+AGG | 0.499442 | 1:+2597142 | MsG0180000185.01.T01:CDS |
| AGACTTGGAATTTGAGGTAA+GGG | 0.499769 | 1:-2596595 | None:intergenic |
| AACAAAGATTGAGGAATGGA+TGG | 0.528450 | 1:+2596988 | MsG0180000185.01.T01:CDS |
| CGATATCATCAACTAAGATA+AGG | 0.533837 | 1:-2596760 | None:intergenic |
| CGAATGTTAAAGACAAAGAT+GGG | 0.534888 | 1:-2596889 | None:intergenic |
| TGTTAAAGACAAAGATGGGT+TGG | 0.537673 | 1:-2596885 | None:intergenic |
| CTCCAATGCAATAAACTCAC+TGG | 0.539210 | 1:-2597166 | None:intergenic |
| ATGAAGAAGTGAAGTGTTTG+AGG | 0.542144 | 1:-2596552 | None:intergenic |
| AGGATGAGAATCTATGAACT+TGG | 0.551100 | 1:+2597022 | MsG0180000185.01.T01:CDS |
| TTTGTGGACATGATGAGTGT+TGG | 0.558842 | 1:-2596505 | None:intergenic |
| GTGAGTTTATTGCATTGGAG+TGG | 0.561039 | 1:+2597169 | MsG0180000185.01.T01:CDS |
| ATCAAGTGCTGATCGAATTG+AGG | 0.561859 | 1:-2596657 | None:intergenic |
| GTGGACATGATGAGTGTTGG+AGG | 0.566977 | 1:-2596502 | None:intergenic |
| AATGGATGGAATTACAAAAG+AGG | 0.570341 | 1:+2597002 | MsG0180000185.01.T01:CDS |
| TGATTCCATCTATGATCCAC+AGG | 0.576078 | 1:-2597088 | None:intergenic |
| TGGAATCAACATGGTCTTGG+TGG | 0.582134 | 1:+2597103 | MsG0180000185.01.T01:CDS |
| TTAGCATCCAATCTCACCCA+TGG | 0.582810 | 1:-2597202 | None:intergenic |
| TAGCTTCTTGCATAATTGAG+TGG | 0.588805 | 1:-2596683 | None:intergenic |
| TGATTACACAACAAAGATTG+AGG | 0.596745 | 1:+2596979 | MsG0180000185.01.T01:CDS |
| CAAAGAGCATCCAAAGGACA+AGG | 0.605477 | 1:-2597229 | None:intergenic |
| ACCCCGGTATTAAAGTAACA+AGG | 0.631984 | 1:-2596923 | None:intergenic |
| AAATTTGCATTGCAATACTC+CGG | 0.633009 | 1:-2596833 | None:intergenic |
| ATGAGTGTTGGAGGACAGAG+AGG | 0.637026 | 1:-2596493 | None:intergenic |
| GGAGTGGAAAAGGTAAACCA+TGG | 0.642822 | 1:+2597185 | MsG0180000185.01.T01:CDS |
| TAGATCAATTACCATAACCC+CGG | 0.646191 | 1:-2596939 | None:intergenic |
| GATGGGTTGGACCAAAATGT+TGG | 0.647131 | 1:-2596872 | None:intergenic |
| ACACAACAAAGATTGAGGAA+TGG | 0.651197 | 1:+2596984 | MsG0180000185.01.T01:CDS |
| GAGTGGAAAAGGTAAACCAT+GGG | 0.662161 | 1:+2597186 | MsG0180000185.01.T01:CDS |
| ACCTTGTTACTTTAATACCG+GGG | 0.664037 | 1:+2596922 | MsG0180000185.01.T01:CDS |
| GGTGCCCAAAGAGCATCCAA+AGG | 0.694592 | 1:-2597235 | None:intergenic |
| GATCATAGATGGAATCAACA+TGG | 0.708687 | 1:+2597094 | MsG0180000185.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TGGTAATTGATCTAGAAAAA+TGG | + | Chr1:2596948-2596967 | MsG0180000185.01.T01:CDS | 25.0% |
| !! | AAGTGAAAAATGATGTTTTG+TGG | - | Chr1:2596524-2596543 | None:intergenic | 25.0% |
| !! | ACAACTTTTCTTACACATAA+TGG | - | Chr1:2596725-2596744 | None:intergenic | 25.0% |
| !!! | AAACCTTGTTACTTTAATAC+CGG | + | Chr1:2596920-2596939 | MsG0180000185.01.T01:CDS | 25.0% |
| AAATTTGCATTGCAATACTC+CGG | - | Chr1:2596836-2596855 | None:intergenic | 30.0% | |
| AATCATCGAAATTGTAGACT+TGG | - | Chr1:2596613-2596632 | None:intergenic | 30.0% | |
| AATGGATGGAATTACAAAAG+AGG | + | Chr1:2597002-2597021 | MsG0180000185.01.T01:CDS | 30.0% | |
| AATTGTAGACTTGGAATTTG+AGG | - | Chr1:2596604-2596623 | None:intergenic | 30.0% | |
| CAATTATGCAAGAAGCTATT+TGG | + | Chr1:2596688-2596707 | MsG0180000185.01.T01:CDS | 30.0% | |
| CGAATGTTAAAGACAAAGAT+GGG | - | Chr1:2596892-2596911 | None:intergenic | 30.0% | |
| CGATATCATCAACTAAGATA+AGG | - | Chr1:2596763-2596782 | None:intergenic | 30.0% | |
| TGATTACACAACAAAGATTG+AGG | + | Chr1:2596979-2596998 | MsG0180000185.01.T01:CDS | 30.0% | |
| TGTAAGAAAAGTTGTGTACT+TGG | + | Chr1:2596730-2596749 | MsG0180000185.01.T01:CDS | 30.0% | |
| TTTCGATGATTCAATCGTTT+CGG | + | Chr1:2596622-2596641 | MsG0180000185.01.T01:CDS | 30.0% | |
| ! | TTTACTTCACACCAACATTT+TGG | + | Chr1:2596861-2596880 | MsG0180000185.01.T01:CDS | 30.0% |
| !! | AACCTTGTTACTTTAATACC+GGG | + | Chr1:2596921-2596940 | MsG0180000185.01.T01:CDS | 30.0% |
| !!! | AGGGAATGATTTTGAGATTA+TGG | - | Chr1:2596579-2596598 | None:intergenic | 30.0% |
| !!! | CTTTTTTGCTTGTTTTTGCA+GGG | + | Chr1:2597056-2597075 | MsG0180000185.01.T01:CDS | 30.0% |
| !!! | TGCCAAAACTGCATTTTTTT+CGG | - | Chr1:2596810-2596829 | None:intergenic | 30.0% |
| !!! | TTTTTTGCTTGTTTTTGCAG+GGG | + | Chr1:2597057-2597076 | MsG0180000185.01.T01:CDS | 30.0% |
| AACAAAGATTGAGGAATGGA+TGG | + | Chr1:2596988-2597007 | MsG0180000185.01.T01:CDS | 35.0% | |
| ACACAACAAAGATTGAGGAA+TGG | + | Chr1:2596984-2597003 | MsG0180000185.01.T01:CDS | 35.0% | |
| AGGATGAGAATCTATGAACT+TGG | + | Chr1:2597022-2597041 | MsG0180000185.01.T01:CDS | 35.0% | |
| CCTGCAAAAACAAGCAAAAA+AGG | - | Chr1:2597058-2597077 | None:intergenic | 35.0% | |
| GATCATAGATGGAATCAACA+TGG | + | Chr1:2597094-2597113 | MsG0180000185.01.T01:CDS | 35.0% | |
| GCAAAAACAAGCAAAAAAGG+TGG | - | Chr1:2597055-2597074 | None:intergenic | 35.0% | |
| GCGAATGTTAAAGACAAAGA+TGG | - | Chr1:2596893-2596912 | None:intergenic | 35.0% | |
| TAGATCAATTACCATAACCC+CGG | - | Chr1:2596942-2596961 | None:intergenic | 35.0% | |
| TAGCTTCTTGCATAATTGAG+TGG | - | Chr1:2596686-2596705 | None:intergenic | 35.0% | |
| TGTTAAAGACAAAGATGGGT+TGG | - | Chr1:2596888-2596907 | None:intergenic | 35.0% | |
| TTACTTTAATACCGGGGTTA+TGG | + | Chr1:2596928-2596947 | MsG0180000185.01.T01:CDS | 35.0% | |
| TTATTGCATTGGAGTGGAAA+AGG | + | Chr1:2597175-2597194 | MsG0180000185.01.T01:CDS | 35.0% | |
| TTCGATGATTCAATCGTTTC+GGG | + | Chr1:2596623-2596642 | MsG0180000185.01.T01:CDS | 35.0% | |
| ! | AGACTTGGAATTTGAGGTAA+GGG | - | Chr1:2596598-2596617 | None:intergenic | 35.0% |
| ! | AGCCGAAAAAAATGCAGTTT+TGG | + | Chr1:2596805-2596824 | MsG0180000185.01.T01:CDS | 35.0% |
| ! | ATGAAGAAGTGAAGTGTTTG+AGG | - | Chr1:2596555-2596574 | None:intergenic | 35.0% |
| ! | TAGACTTGGAATTTGAGGTA+AGG | - | Chr1:2596599-2596618 | None:intergenic | 35.0% |
| !! | ACCTTGTTACTTTAATACCG+GGG | + | Chr1:2596922-2596941 | MsG0180000185.01.T01:CDS | 35.0% |
| !!! | ACTGCATTTTTTTCGGCTAA+TGG | - | Chr1:2596803-2596822 | None:intergenic | 35.0% |
| !!! | CCTTTTTTGCTTGTTTTTGC+AGG | + | Chr1:2597055-2597074 | MsG0180000185.01.T01:CDS | 35.0% |
| ACCCCGGTATTAAAGTAACA+AGG | - | Chr1:2596926-2596945 | None:intergenic | 40.0% | |
| AGATGGAATCAACATGGTCT+TGG | + | Chr1:2597100-2597119 | MsG0180000185.01.T01:CDS | 40.0% | |
| CTCCAATGCAATAAACTCAC+TGG | - | Chr1:2597169-2597188 | None:intergenic | 40.0% | |
| GAGTGGAAAAGGTAAACCAT+GGG | + | Chr1:2597186-2597205 | MsG0180000185.01.T01:CDS | 40.0% | |
| GGTGTCTGCAAAAGATCATA+AGG | - | Chr1:2597259-2597278 | None:intergenic | 40.0% | |
| GTCCAGTGAGTTTATTGCAT+TGG | + | Chr1:2597164-2597183 | MsG0180000185.01.T01:CDS | 40.0% | |
| GTGAGTTTATTGCATTGGAG+TGG | + | Chr1:2597169-2597188 | MsG0180000185.01.T01:CDS | 40.0% | |
| TGATTCCATCTATGATCCAC+AGG | - | Chr1:2597091-2597110 | None:intergenic | 40.0% | |
| TGCTAATAGACCTTGTCCTT+TGG | + | Chr1:2597219-2597238 | MsG0180000185.01.T01:CDS | 40.0% | |
| TTGTCCTTTGGATGCTCTTT+GGG | + | Chr1:2597231-2597250 | MsG0180000185.01.T01:CDS | 40.0% | |
| TTGTTCCTGTGGATCATAGA+TGG | + | Chr1:2597083-2597102 | MsG0180000185.01.T01:CDS | 40.0% | |
| TTTGTGGACATGATGAGTGT+TGG | - | Chr1:2596508-2596527 | None:intergenic | 40.0% | |
| !! | ATCAAGTGCTGATCGAATTG+AGG | - | Chr1:2596660-2596679 | None:intergenic | 40.0% |
| !!! | CTTGGTGGTGATAATTTTCG+AGG | + | Chr1:2597118-2597137 | MsG0180000185.01.T01:CDS | 40.0% |
| AGGTAAACCATGGGTGAGAT+TGG | + | Chr1:2597195-2597214 | MsG0180000185.01.T01:CDS | 45.0% | |
| CTTGTCCTTTGGATGCTCTT+TGG | + | Chr1:2597230-2597249 | MsG0180000185.01.T01:CDS | 45.0% | |
| CTTTGTCGAGATCTTCATCC+AGG | + | Chr1:2597142-2597161 | MsG0180000185.01.T01:CDS | 45.0% | |
| GATCTAGAAAAATGGCGCGA+CGG | + | Chr1:2596956-2596975 | MsG0180000185.01.T01:CDS | 45.0% | |
| GGAGTGGAAAAGGTAAACCA+TGG | + | Chr1:2597185-2597204 | MsG0180000185.01.T01:CDS | 45.0% | |
| TGCAATAAACTCACTGGACC+TGG | - | Chr1:2597163-2597182 | None:intergenic | 45.0% | |
| TTAGCATCCAATCTCACCCA+TGG | - | Chr1:2597205-2597224 | None:intergenic | 45.0% | |
| ! | TGGAATCAACATGGTCTTGG+TGG | + | Chr1:2597103-2597122 | MsG0180000185.01.T01:CDS | 45.0% |
| !! | AAATGCAGTTTTGGCAGCAC+CGG | + | Chr1:2596814-2596833 | MsG0180000185.01.T01:CDS | 45.0% |
| !! | CAAAGAGCATCCAAAGGACA+AGG | - | Chr1:2597232-2597251 | None:intergenic | 45.0% |
| !! | GATGGGTTGGACCAAAATGT+TGG | - | Chr1:2596875-2596894 | None:intergenic | 45.0% |
| TGCAGGGGAAATTGTTCCTG+TGG | + | Chr1:2597072-2597091 | MsG0180000185.01.T01:CDS | 50.0% | |
| !! | ATGAGTGTTGGAGGACAGAG+AGG | - | Chr1:2596496-2596515 | None:intergenic | 50.0% |
| !! | GTGGACATGATGAGTGTTGG+AGG | - | Chr1:2596505-2596524 | None:intergenic | 50.0% |
| !! | GGTGCCCAAAGAGCATCCAA+AGG | - | Chr1:2597238-2597257 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 2596482 | 2597297 | 2596482 | ID=MsG0180000185.01;Name=MsG0180000185.01 |
| Chr1 | mRNA | 2596482 | 2597297 | 2596482 | ID=MsG0180000185.01.T01;Parent=MsG0180000185.01;Name=MsG0180000185.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|271 |
| Chr1 | exon | 2596482 | 2597297 | 2596482 | ID=MsG0180000185.01.T01:exon:6551;Parent=MsG0180000185.01.T01 |
| Chr1 | CDS | 2596482 | 2597297 | 2596482 | ID=MsG0180000185.01.T01:cds;Parent=MsG0180000185.01.T01 |
| Gene Sequence |
| Protein sequence |
