AlfalfaGEDB | MsG0780040542.01

M. sativa cultivar ZhongmuNo.1 / MsG0780040542.01

KEGG: K08857
GO: GO:0004672 GO:0005524 GO:0006468
PFAM: PF00069

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040542.01.T01	XP_024626098.1	77.333	300	9	2	1	241	1	300	5.45E-159	465

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040542.01.T01	Q9LT35	55.363	289	65	4	13	242	1	284	5.21E-112	330

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040542.01.T01	G7KUE1	77.333	300	9	2	1	241	1	300	2.61e-159	465

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000076.01	MsG0780040542.01	0.804322	2.283848e-49	1.174040e-46
MsG0180000185.01	MsG0780040542.01	0.800613	1.327667e-48	6.209402e-46
MsG0380014953.01	MsG0780040542.01	0.808909	2.455936e-50	1.421661e-47
MsG0380015518.01	MsG0780040542.01	0.832544	8.898422e-56	9.977671e-53
MsG0380015858.01	MsG0780040542.01	0.809852	1.541512e-50	9.150492e-48
MsG0380016110.01	MsG0780040542.01	0.807883	4.065330e-50	2.290663e-47
MsG0380016865.01	MsG0780040542.01	0.817919	2.569093e-52	1.895784e-49
MsG0380017997.01	MsG0780040542.01	0.814608	1.412851e-51	9.523653e-49
MsG0480018990.01	MsG0780040542.01	0.808288	3.333842e-50	1.898764e-47
MsG0480019588.01	MsG0780040542.01	0.805395	1.362868e-49	7.202180e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040542.01.T01	MTR_7g092360	77.333	300	9	2	1	241	1	300	6.61e-163	465
MsG0780040542.01.T01	MTR_1g052115	60.507	276	50	2	13	229	1	276	1.92e-114	350
MsG0780040542.01.T01	MTR_1g081000	54.286	280	65	3	13	229	1	280	4.24e-101	306
MsG0780040542.01.T01	MTR_1g081000	54.286	280	65	3	13	229	1	280	5.67e-101	306
MsG0780040542.01.T01	MTR_4g051648	56.274	263	56	2	12	215	4	266	2.86e-99	311
MsG0780040542.01.T01	MTR_7g095450	53.405	279	70	3	13	231	1	279	6.83e-98	298
MsG0780040542.01.T01	MTR_1g071480	53.030	264	65	2	13	217	1	264	4.77e-95	290
MsG0780040542.01.T01	MTR_1g052115	63.298	188	27	1	84	229	1	188	5.92e-78	252
MsG0780040542.01.T01	MTR_1g048630	33.488	215	120	8	13	208	4	214	6.07e-30	118
MsG0780040542.01.T01	MTR_4g075410	33.803	213	121	4	5	198	8	219	7.69e-29	114

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040542.01.T01	AT3G20860	55.363	289	65	4	13	242	1	284	5.32e-113	330
MsG0780040542.01.T01	AT3G44200	52.249	289	76	4	12	239	4	291	3.92e-99	309
MsG0780040542.01.T01	AT3G44200	52.249	289	76	4	12	239	4	291	3.92e-99	309
MsG0780040542.01.T01	AT3G63280	53.817	262	62	3	13	215	1	262	3.09e-97	295
MsG0780040542.01.T01	AT3G63280	53.817	262	62	3	13	215	1	262	3.09e-97	295
MsG0780040542.01.T01	AT3G63280	53.817	262	62	3	13	215	1	262	3.09e-97	295
MsG0780040542.01.T01	AT3G63280	53.612	263	63	3	12	215	54	316	1.58e-96	295
MsG0780040542.01.T01	AT3G04810	52.518	278	69	3	13	227	1	278	1.54e-95	292
MsG0780040542.01.T01	AT3G04810	52.518	278	69	3	13	227	1	278	1.54e-95	292
MsG0780040542.01.T01	AT3G04810	52.518	278	69	3	13	227	1	278	1.54e-95	292

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Find 65 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATCTCCCAAATCTAG+TGG	0.651717	7:-78953347	None:intergenic
AAATCTGATATATGGTCTCT+TGG	0.477019	7:-78954322	MsG0780040542.01.T01:intron
AAATTATTAATTACCTCCTC+AGG	0.419497	7:+78955064	None:intergenic
AACCATATGGTATGTCTGCG+AGG	0.647448	7:+78954347	None:intergenic
AAGAAAGTGCAGAGAGAGGT+AGG	0.543618	7:+78958403	None:intergenic
AAGGACAACAATATTCGGCT+CGG	0.643453	7:-78954789	MsG0780040542.01.T01:intron
AAGTGCAGAAGGTTTGCAAA+TGG	0.515002	7:-78954979	MsG0780040542.01.T01:intron
ACCCTTGCCACCACTAGATT+TGG	0.273291	7:+78953337	None:intergenic
ACTCTAACCGTGTAATCCAT+AGG	0.535134	7:-78954922	MsG0780040542.01.T01:CDS
ACTGAATAACCCATATATTG+TGG	0.541224	7:-78956300	MsG0780040542.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAGAAGGGGAAAATAA+AGG	+	Chr7:78958219-78958238	None:intergenic	30.0%
AAATCTGATATATGGTCTCT+TGG	-	Chr7:78957553-78957572	MsG0780040542.01.T01:intron	30.0%
AAATTATATGAGCATTACCG+AGG	+	Chr7:78957246-78957265	None:intergenic	30.0%
AACACATACTATAGAGAATG+TGG	-	Chr7:78956194-78956213	MsG0780040542.01.T01:intron	30.0%
AATTGGGTTTGTAGCTAATT+AGG	-	Chr7:78954051-78954070	MsG0780040542.01.T01:intron	30.0%
ACAAAAGGCTCACTTATTAT+GGG	+	Chr7:78956309-78956328	None:intergenic	30.0%
ACACATACTATAGAGAATGT+GGG	-	Chr7:78956195-78956214	MsG0780040542.01.T01:intron	30.0%
ACTCATACATTCAAGAGTTT+GGG	-	Chr7:78956649-78956668	MsG0780040542.01.T01:intron	30.0%
ACTGAATAACCCATATATTG+TGG	-	Chr7:78955575-78955594	MsG0780040542.01.T01:intron	30.0%
AGGGAAAATACCTAAATCAT+TGG	+	Chr7:78957963-78957982	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	78953350	78958547	78953350	ID=MsG0780040542.01;Name=MsG0780040542.01
Chr7	mRNA	78953350	78958547	78953350	ID=MsG0780040542.01.T01;Parent=MsG0780040542.01;Name=MsG0780040542.01.T01;_AED=0.32;_eAED=0.32;_QI=187\|0.8\|0.90\|1\|0.9\|0.81\|11\|0\|243
Chr7	exon	78953350	78953478	78953350	ID=MsG0780040542.01.T01:exon:16203;Parent=MsG0780040542.01.T01
Chr7	exon	78954192	78954241	78954192	ID=MsG0780040542.01.T01:exon:16202;Parent=MsG0780040542.01.T01
Chr7	exon	78954323	78954404	78954323	ID=MsG0780040542.01.T01:exon:16201;Parent=MsG0780040542.01.T01
Chr7	exon	78954650	78954699	78954650	ID=MsG0780040542.01.T01:exon:16200;Parent=MsG0780040542.01.T01
Chr7	exon	78954790	78954832	78954790	ID=MsG0780040542.01.T01:exon:16199;Parent=MsG0780040542.01.T01
Chr7	exon	78954913	78954993	78954913	ID=MsG0780040542.01.T01:exon:16198;Parent=MsG0780040542.01.T01
Chr7	exon	78955078	78955123	78955078	ID=MsG0780040542.01.T01:exon:16197;Parent=MsG0780040542.01.T01
Chr7	exon	78955967	78956013	78955967	ID=MsG0780040542.01.T01:exon:16196;Parent=MsG0780040542.01.T01
Chr7	exon	78956274	78956355	78956274	ID=MsG0780040542.01.T01:exon:16195;Parent=MsG0780040542.01.T01
Chr7	exon	78957650	78957809	78957650	ID=MsG0780040542.01.T01:exon:16194;Parent=MsG0780040542.01.T01
Chr7	exon	78958399	78958547	78958399	ID=MsG0780040542.01.T01:exon:16193;Parent=MsG0780040542.01.T01
Chr7	five_prime_UTR	78958399	78958547	78958399	ID=MsG0780040542.01.T01:five_prime_utr;Parent=MsG0780040542.01.T01
Chr7	five_prime_UTR	78957772	78957809	78957772	ID=MsG0780040542.01.T01:five_prime_utr;Parent=MsG0780040542.01.T01
Chr7	CDS	78957650	78957771	78957650	ID=MsG0780040542.01.T01:cds;Parent=MsG0780040542.01.T01
Chr7	CDS	78956274	78956355	78956274	ID=MsG0780040542.01.T01:cds;Parent=MsG0780040542.01.T01
Chr7	CDS	78955967	78956013	78955967	ID=MsG0780040542.01.T01:cds;Parent=MsG0780040542.01.T01
Chr7	CDS	78955078	78955123	78955078	ID=MsG0780040542.01.T01:cds;Parent=MsG0780040542.01.T01
Chr7	CDS	78954913	78954993	78954913	ID=MsG0780040542.01.T01:cds;Parent=MsG0780040542.01.T01
Chr7	CDS	78954790	78954832	78954790	ID=MsG0780040542.01.T01:cds;Parent=MsG0780040542.01.T01
Chr7	CDS	78954650	78954699	78954650	ID=MsG0780040542.01.T01:cds;Parent=MsG0780040542.01.T01
Chr7	CDS	78954323	78954404	78954323	ID=MsG0780040542.01.T01:cds;Parent=MsG0780040542.01.T01
Chr7	CDS	78954192	78954241	78954192	ID=MsG0780040542.01.T01:cds;Parent=MsG0780040542.01.T01
Chr7	CDS	78953350	78953478	78953350	ID=MsG0780040542.01.T01:cds;Parent=MsG0780040542.01.T01

Gene Sequence

>MsG0780040542.01.T01

ATGGAGATAGAGAATAGTGTGATGAAGTCAAAGAAGATGGAAGAGTATGAAGTGATTGAACAAATTGGTAGAGGAGCATTTGGTGCTGCTTTTCTTGTTCTTCATAAGTCTGAGAAGAAGAGTTCGTCTCTATTACAGATGAATCTGATTGCAAAACTGAATAACCCATATATTGTGGATTACAGAGATGCTTGGGTGGAGAAGGAGGATCATGTATGCATTATAACTGGCTATTGTGAAGGAGGTGACATGGCTGATAGTATTAAGAAAGCTCGAGGATCATTTTTTCCTGAGGAGAAGGTTTGCAAATGGCTAACTCAGTTGTTGATAGCTGTCGACTACTTGCACTCTAACCGTGTAATCCATAGGGATCTCAAGTGCTCCAACATATTCCTCACCAAGGACAACAATATTCGGCTCGGTGATTTTGGTCTTGCAAAGCGACTTAATGGAGAAGACCTCACTTCCTCGGTAGTTGGAACTCCAAATTACATGTGTCCTGAGCTCCTCGCAGACATACCATATGGTTATAAATCTGATATATGGTCTCTTGGTTGCTGCATGTTTGAGATTGCTGCACATCAACCAGCATTTCGTGCTCCGGCTGCCGAATTGCTAAGACATCCACATTTACAACCTTACGTTCTTCGCTGTCAGAATGCATCATCTAATGTTCTTCCAATATATCCCCTAGTTAACTCAAAGGATAAACAAAAGATCTCCCAAATCTAG

Protein sequence

>MsG0780040542.01.T01

MEIENSVMKSKKMEEYEVIEQIGRGAFGAAFLVLHKSEKKSSSLLQMNLIAKLNNPYIVDYRDAWVEKEDHVCIITGYCEGGDMADSIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNNIRLGDFGLAKRLNGEDLTSSVVGTPNYMCPELLADIPYGYKSDIWSLGCCMFEIAAHQPAFRAPAAELLRHPHLQPYVLRCQNASSNVLPIYPLVNSKDKQKISQI*