AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000651.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000651.01.T01 MTR_1g010220 67.532 231 47 3 27 235 222 446 1.35e-101 310
MsG0180000651.01.T01 MTR_1g027490 51.739 230 86 3 27 235 202 427 2.34e-70 228
MsG0180000651.01.T01 MTR_1g027570 50.435 230 89 3 27 235 217 442 5.07e-66 217
MsG0180000651.01.T01 MTR_1g027580 50.000 228 89 3 29 235 219 442 5.86e-66 217
MsG0180000651.01.T01 MTR_1g027640 50.000 230 90 3 27 235 222 447 1.59e-65 216
MsG0180000651.01.T01 MTR_1g027660 51.542 227 80 5 30 235 202 419 3.79e-64 212
MsG0180000651.01.T01 MTR_1g010260 51.948 231 77 5 39 235 224 454 1.91e-63 210
MsG0180000651.01.T01 MTR_1g027600 49.115 226 90 3 31 235 224 445 3.24e-63 210
MsG0180000651.01.T01 MTR_1g027610 54.430 158 67 2 76 232 2 155 6.68e-52 166
MsG0180000651.01.T01 MTR_1g010240 45.455 220 88 6 27 217 187 403 2.91e-51 176
MsG0180000651.01.T01 MTR_3g088760 39.819 221 108 5 39 235 233 452 2.77e-41 150
MsG0180000651.01.T01 MTR_3g088755 38.760 258 118 9 6 235 214 459 3.11e-41 149
MsG0180000651.01.T01 MTR_3g088775 41.126 231 108 8 31 235 247 475 8.76e-41 148
MsG0180000651.01.T01 MTR_3g088785 40.948 232 104 8 33 234 225 453 1.66e-40 147
MsG0180000651.01.T01 MTR_3g088750 39.113 248 118 8 15 235 216 457 2.52e-40 147
MsG0180000651.01.T01 MTR_2g009670 39.600 250 118 8 13 235 219 462 3.67e-36 135
MsG0180000651.01.T01 MTR_3g088780 37.555 229 118 5 31 235 229 456 1.65e-33 127
MsG0180000651.01.T01 MTR_1g027670 71.429 84 24 0 152 235 1 84 1.87e-33 124
MsG0180000651.01.T01 MTR_1g010250 88.235 51 6 0 27 77 231 281 1.25e-23 99.4
MsG0180000651.01.T01 MTR_7g079350 38.158 152 83 5 90 236 249 394 1.28e-22 96.3
MsG0180000651.01.T01 MTR_7g079320 33.010 206 121 7 42 236 188 387 1.11e-20 90.9
MsG0180000651.01.T01 MTR_2g031520 35.135 148 87 2 96 235 269 415 4.62e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000651.01.T01 AT1G21230 34.894 235 127 5 25 235 207 439 3.88e-33 126
MsG0180000651.01.T01 AT1G21240 35.319 235 125 7 22 235 218 446 7.37e-32 123
MsG0180000651.01.T01 AT1G21270 34.252 254 128 8 6 235 197 435 6.95e-30 117
MsG0180000651.01.T01 AT1G21250 35.747 221 113 7 39 235 225 440 1.79e-29 116
MsG0180000651.01.T01 AT1G21210 33.333 228 118 7 36 235 220 441 4.23e-26 106
MsG0180000651.01.T01 AT1G17910 36.686 169 76 4 75 234 338 484 8.81e-22 94.0
MsG0180000651.01.T01 AT1G16120 35.928 167 88 5 69 235 313 460 4.79e-20 89.0
MsG0180000651.01.T01 AT1G69730 32.287 223 110 6 43 235 267 478 1.49e-19 87.4
MsG0180000651.01.T01 AT1G19390 40.123 162 75 5 78 235 339 482 1.62e-19 87.4
MsG0180000651.01.T01 AT1G16130 38.614 101 61 1 135 235 348 447 1.69e-19 87.4
MsG0180000651.01.T01 AT1G16110 36.875 160 81 5 78 235 322 463 1.46e-18 84.7
MsG0180000651.01.T01 AT1G22720 42.453 106 58 1 133 235 62 167 3.41e-18 80.5
MsG0180000651.01.T01 AT1G16150 37.615 109 65 2 127 235 350 455 5.43e-17 80.1
MsG0180000651.01.T01 AT1G79670 34.595 185 86 6 84 235 233 415 7.44e-17 79.7
MsG0180000651.01.T01 AT1G79670 34.595 185 86 6 84 235 270 452 8.37e-17 79.7
MsG0180000651.01.T01 AT1G16260 34.177 158 84 2 78 235 284 421 2.05e-16 78.6
MsG0180000651.01.T01 AT1G16260 34.177 158 84 2 78 235 284 421 2.05e-16 78.6
MsG0180000651.01.T01 AT1G79680 36.646 161 80 4 78 235 323 464 2.67e-16 78.2
MsG0180000651.01.T01 AT1G16260 48.148 81 42 0 155 235 332 412 5.02e-16 77.4
MsG0180000651.01.T01 AT4G31100 34.177 158 86 4 78 235 336 475 8.59e-16 76.6
MsG0180000651.01.T01 AT1G16160 38.000 100 53 2 137 235 372 463 8.12e-15 73.6
MsG0180000651.01.T01 AT4G31110 35.443 158 84 2 78 235 345 484 9.78e-14 70.5
MsG0180000651.01.T01 AT4G31110 35.443 158 84 2 78 235 323 462 9.99e-14 70.5
MsG0180000651.01.T01 AT3G25490 38.261 115 68 2 124 235 25 139 6.97e-13 67.8
MsG0180000651.01.T01 AT1G18390 31.707 164 101 5 79 233 212 373 1.66e-11 63.9
MsG0180000651.01.T01 AT1G18390 34.862 109 66 2 130 233 259 367 6.00e-11 62.4

Find 42 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCCCTATGGTTGTTAAT+TGG 0.177774 1:-9219680 MsG0180000651.01.T01:CDS
GCAGAATGGAGGTTCTATTT+TGG 0.216282 1:-9218764 MsG0180000651.01.T01:CDS
GCAAATTGTAATAACACTTT+TGG 0.229122 1:-9219123 MsG0180000651.01.T01:CDS
TTTGGCTTTCATCTATTGTT+TGG 0.264089 1:+9218567 None:intergenic
TTTCCCTATGGTTGTTAATT+GGG 0.283010 1:-9219679 MsG0180000651.01.T01:CDS
AGGCATAGTTATCTGTAGTT+TGG 0.284542 1:+9219628 None:intergenic
ATCATAGGTAAAGGAGGTTT+TGG 0.296930 1:-9218643 MsG0180000651.01.T01:CDS
GAGAAATTCTTTACGCAGAA+TGG 0.348763 1:-9218778 MsG0180000651.01.T01:CDS
GGCATAGTTATCTGTAGTTT+GGG 0.356371 1:+9219629 None:intergenic
GCTCTCATCAAAGTTGTTAG+TGG 0.374050 1:+9218669 None:intergenic
TATACCGATAAGGGACTATA+TGG 0.412660 1:-9221206 MsG0180000651.01.T01:CDS
AAGACCATATAGTCCCTTAT+CGG 0.417148 1:+9221202 None:intergenic
CCGATCGGGCAACTCGGAAA+TGG 0.418932 1:-9219081 MsG0180000651.01.T01:CDS
ATTTGATATGCATTTCCATC+AGG 0.433653 1:+9219033 None:intergenic
TTTGATGAGAGCTTAATCAT+AGG 0.442104 1:-9218658 MsG0180000651.01.T01:CDS
CATATAAAGAAACTACCTAA+TGG 0.453481 1:-9219705 MsG0180000651.01.T01:CDS
TACACTTGTTTCTGTCCGAT+CGG 0.467597 1:-9219096 MsG0180000651.01.T01:CDS
TTATCGGTATATTGTCCCTT+CGG 0.470028 1:+9221218 None:intergenic
ACACTTGTTTCTGTCCGATC+GGG 0.475579 1:-9219095 MsG0180000651.01.T01:CDS
TATTTATTGTTCTATTTGTG+TGG 0.486882 1:-9218849 MsG0180000651.01.T01:CDS
AAGGGACAATATACCGATAA+GGG 0.491038 1:-9221215 MsG0180000651.01.T01:CDS
TATTACAATTTGCTTTACTT+AGG 0.493481 1:+9219133 None:intergenic
CTCGGAAATGGAACAAGGTT+AGG 0.495203 1:-9219069 MsG0180000651.01.T01:CDS
ACCTAATGGAACTTTCCCTA+TGG 0.498258 1:-9219691 MsG0180000651.01.T01:CDS
TTCTGTCCGATCGGGCAACT+CGG 0.512709 1:-9219087 MsG0180000651.01.T01:CDS
ACCATAGGGAAAGTTCCATT+AGG 0.516458 1:+9219690 None:intergenic
GAAGGGACAATATACCGATA+AGG 0.516767 1:-9221216 MsG0180000651.01.T01:CDS
CCATTTCCGAGTTGCCCGAT+CGG 0.525347 1:+9219081 None:intergenic
ACAACCCAATTAACAACCAT+AGG 0.533753 1:+9219675 None:intergenic
GAGAGCTTAATCATAGGTAA+AGG 0.540956 1:-9218652 MsG0180000651.01.T01:CDS
TACAGATAACTATGCCTGCA+AGG 0.557545 1:-9219622 MsG0180000651.01.T01:CDS
GGAAATGGAACAAGGTTAGG+AGG 0.565680 1:-9219066 MsG0180000651.01.T01:CDS
AGCTTAATCATAGGTAAAGG+AGG 0.575596 1:-9218649 MsG0180000651.01.T01:CDS
CAACCCAATTAACAACCATA+GGG 0.589378 1:+9219676 None:intergenic
GGAGGGTGCAAAGTACCTGA+TGG 0.595188 1:-9219048 MsG0180000651.01.T01:CDS
TAAGAACACTCTTAATTCCG+AGG 0.595330 1:-9221180 MsG0180000651.01.T01:CDS
CAAATAGTACTACCAACCCT+TGG 0.596135 1:-9219015 MsG0180000651.01.T01:intron
AAGAACACTCTTAATTCCGA+GGG 0.598107 1:-9221179 MsG0180000651.01.T01:intron
GATAAAGATTCAGATTATGA+CGG 0.610495 1:-9219582 MsG0180000651.01.T01:intron
AAATTCTTTACGCAGAATGG+AGG 0.614947 1:-9218775 MsG0180000651.01.T01:CDS
GGCAACTCGGAAATGGAACA+AGG 0.629361 1:-9219074 MsG0180000651.01.T01:CDS
GAAATGGAACAAGGTTAGGA+GGG 0.641811 1:-9219065 MsG0180000651.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTTTAATAAAAAAGTTAA+AGG + Chr1:9218896-9218915 None:intergenic 10.0%
!! AGTTTAATAAAAAAAGTTAA+AGG - Chr1:9218784-9218803 MsG0180000651.01.T01:CDS 10.0%
!!! AAATAATTGGTAAAATATTT+TGG + Chr1:9219418-9219437 None:intergenic 10.0%
!!! AACTTTTTTATTAAACTTAA+CGG - Chr1:9218898-9218917 MsG0180000651.01.T01:intron 10.0%
!!! ACTTTTTTTATTAAACTTAA+CGG + Chr1:9218781-9218800 None:intergenic 10.0%
!! GGAAATGATAATTAAATAAT+TGG + Chr1:9219431-9219450 None:intergenic 15.0%
!! TAATAAAAAAAGTTAAAGGT+GGG - Chr1:9218788-9218807 MsG0180000651.01.T01:CDS 15.0%
!! TTAATAAAAAAAGTTAAAGG+TGG - Chr1:9218787-9218806 MsG0180000651.01.T01:CDS 15.0%
!! TTAATAAAAAAGTTAAAGGT+GGG + Chr1:9218892-9218911 None:intergenic 15.0%
!! TTTAATAAAAAAGTTAAAGG+TGG + Chr1:9218893-9218912 None:intergenic 15.0%
!!! GTACTCAATATAATATATTT+TGG + Chr1:9219307-9219326 None:intergenic 15.0%
!! AAGAAAGAAAAAAAAAACTG+CGG + Chr1:9220350-9220369 None:intergenic 20.0%
!! ATGTTCTACAGAAAATTTAT+AGG + Chr1:9220099-9220118 None:intergenic 20.0%
!! ATTAGTAGTGTTTATATAGT+GGG + Chr1:9219535-9219554 None:intergenic 20.0%
!! GAAACGCAAAAATAAATTAA+GGG + Chr1:9218685-9218704 None:intergenic 20.0%
!! TATTTATTGTTCTATTTGTG+TGG - Chr1:9220972-9220991 MsG0180000651.01.T01:intron 20.0%
!! TGAAACGCAAAAATAAATTA+AGG + Chr1:9218686-9218705 None:intergenic 20.0%
!! TTATTTGGTATTATTACTGT+TGG + Chr1:9219752-9219771 None:intergenic 20.0%
!!! AAATTTGGGTTCAATATATT+TGG - Chr1:9220931-9220950 MsG0180000651.01.T01:intron 20.0%
!!! ACTTGATCTGAAATATATTT+TGG + Chr1:9219351-9219370 None:intergenic 20.0%
!!! CAAATTGTAATAACACTTTT+GGG - Chr1:9220699-9220718 MsG0180000651.01.T01:intron 20.0%
!!! TATTACAATTTGCTTTACTT+AGG + Chr1:9220691-9220710 None:intergenic 20.0%
!!! TCTTTGATGTTTTTTGAATT+TGG - Chr1:9220397-9220416 MsG0180000651.01.T01:intron 20.0%
!!! TTATGATTTTGATCCAAAAA+TGG - Chr1:9219915-9219934 MsG0180000651.01.T01:intron 20.0%
!!! TTATTTCCAATTACCATTTT+TGG + Chr1:9219931-9219950 None:intergenic 20.0%
!!! TTGTTGAGAATTTTTTTTTG+AGG - Chr1:9218830-9218849 MsG0180000651.01.T01:CDS 20.0%
!!! TTTATTTTTGCGTTTCATTT+TGG - Chr1:9218689-9218708 MsG0180000651.01.T01:CDS 20.0%
!!! TTTTATTAAACTTAACGGAA+GGG + Chr1:9218922-9218903 None:intergenic 20.0%
!!! TTTTTATTAAACTTAACGGA+AGG + Chr1:9218921-9218902 None:intergenic 20.0%
! AACCAATAAATGAGAAACTT+TGG - Chr1:9219208-9219227 MsG0180000651.01.T01:intron 25.0%
! AACTTTAAACTGTCTCAATT+TGG + Chr1:9218736-9218717 None:intergenic 25.0%
! ACATTAGTAGTGTTTATAGT+GGG + Chr1:9219619-9219638 None:intergenic 25.0%
! ATAATTATGTACCCTATTAG+AGG - Chr1:9219503-9219522 MsG0180000651.01.T01:intron 25.0%
! ATATCTCAACAGTAATTTCA+AGG - Chr1:9219858-9219877 MsG0180000651.01.T01:intron 25.0%
! ATGAAACGCAAAATAAGTTA+AGG - Chr1:9219004-9219023 MsG0180000651.01.T01:intron 25.0%
! CATATAAAGAAACTACCTAA+TGG - Chr1:9220116-9220135 MsG0180000651.01.T01:intron 25.0%
! CATTAGTAGTGTTTATATAG+TGG + Chr1:9219536-9219555 None:intergenic 25.0%
! CCTACTTAATTTACCAAAAA+AGG - Chr1:9221002-9221021 MsG0180000651.01.T01:intron 25.0%
! GAAAACAAATTCATAACTGT+TGG - Chr1:9219820-9219839 MsG0180000651.01.T01:intron 25.0%
! GATAAAGATTCAGATTATGA+CGG - Chr1:9220239-9220258 MsG0180000651.01.T01:intron 25.0%
! TAAACACAAATTTCCATGTT+GGG + Chr1:9219700-9219719 None:intergenic 25.0%
! TAAACTTAACGGAAAACTAA+TGG - Chr1:9218909-9218928 MsG0180000651.01.T01:intron 25.0%
! TATCTCAACAGTAATTTCAA+GGG - Chr1:9219859-9219878 MsG0180000651.01.T01:intron 25.0%
! TGAAACGCAAAATAAGTTAA+GGG - Chr1:9219005-9219024 MsG0180000651.01.T01:intron 25.0%
! TGAATTCATTGAAGTGAATT+GGG - Chr1:9220551-9220570 MsG0180000651.01.T01:intron 25.0%
! TTAGTAGTGTTTATATAGTG+GGG + Chr1:9219534-9219553 None:intergenic 25.0%
! TTCCAAAGTTTCTCATTTAT+TGG + Chr1:9219213-9219232 None:intergenic 25.0%
! TTTGATCCAAAAATGGTAAT+TGG - Chr1:9219922-9219941 MsG0180000651.01.T01:intron 25.0%
!! AAAAGGTGTATTTGCTTATT+TGG + Chr1:9219767-9219786 None:intergenic 25.0%
!! ATGATACTGATATTAGTTTG+TGG - Chr1:9220899-9220918 MsG0180000651.01.T01:intron 25.0%
!! ATGGTGATATTTTTCATAAG+TGG + Chr1:9220000-9220019 None:intergenic 25.0%
!! ATTGAGACAGTTTAAAGTTA+AGG - Chr1:9218974-9218993 MsG0180000651.01.T01:intron 25.0%
!! ATTGAGACAGTTTAAAGTTA+AGG + Chr1:9218993-9218974 None:intergenic 25.0%
!! GCAAATTGTAATAACACTTT+TGG - Chr1:9220698-9220717 MsG0180000651.01.T01:intron 25.0%
!! GGAACACAATCTAAAATATT+TGG + Chr1:9219375-9219394 None:intergenic 25.0%
!! TGTGGAACAATCTAAAATTT+GGG - Chr1:9220917-9220936 MsG0180000651.01.T01:intron 25.0%
!! TTGAGACAGTTTAAAGTTAA+GGG - Chr1:9218975-9218994 MsG0180000651.01.T01:intron 25.0%
!! TTGTGGAACAATCTAAAATT+TGG - Chr1:9220916-9220935 MsG0180000651.01.T01:intron 25.0%
!!! ACTTATTTTGCGTTTCATTT+TGG + Chr1:9219002-9219021 None:intergenic 25.0%
!!! ATTTGACAAGTTTCCTTTTT+TGG + Chr1:9221018-9221037 None:intergenic 25.0%
!!! CCTTTTTTGGTAAATTAAGT+AGG + Chr1:9221005-9221024 None:intergenic 25.0%
ATGGTAATTGGAAATAACAC+TGG - Chr1:9219934-9219953 MsG0180000651.01.T01:intron 30.0%
ATTAGGGTAAATACAGACTT+TGG + Chr1:9219032-9219051 None:intergenic 30.0%
ATTAGTAGTGTTTATAGTGG+GGG + Chr1:9219617-9219636 None:intergenic 30.0%
ATTTGATATGCATTTCCATC+AGG + Chr1:9220791-9220810 None:intergenic 30.0%
CACATTAGTAGTGTTTATAG+TGG + Chr1:9219620-9219639 None:intergenic 30.0%
CATTAGTAGTGTTTATAGTG+GGG + Chr1:9219618-9219637 None:intergenic 30.0%
CTAAACACAAATTTCCATGT+TGG + Chr1:9219701-9219720 None:intergenic 30.0%
CTATTCCTTATTGCAAAACA+AGG - Chr1:9220071-9220090 MsG0180000651.01.T01:intron 30.0%
CTGAAAGACAATAAAAAGCA+TGG + Chr1:9220634-9220653 None:intergenic 30.0%
CTGAATTCATTGAAGTGAAT+TGG - Chr1:9220550-9220569 MsG0180000651.01.T01:intron 30.0%
GAATTCATTGAAGTGAATTG+GGG - Chr1:9220552-9220571 MsG0180000651.01.T01:intron 30.0%
GGAACAAGTAATACATTACT+TGG - Chr1:9219229-9219248 MsG0180000651.01.T01:intron 30.0%
GTTGTGTGAATTGAAAAAAG+TGG + Chr1:9219585-9219604 None:intergenic 30.0%
TAAGCATCCAGTTGAATAAA+TGG + Chr1:9219887-9219906 None:intergenic 30.0%
TAGTAGTGTTTATATAGTGG+GGG + Chr1:9219533-9219552 None:intergenic 30.0%
TGGGAATTTAAATGCTTGTA+TGG + Chr1:9220019-9220038 None:intergenic 30.0%
TTAACGGAAAACTAATGGAA+GGG - Chr1:9218914-9218933 MsG0180000651.01.T01:intron 30.0%
TTTCCCTATGGTTGTTAATT+GGG - Chr1:9220142-9220161 MsG0180000651.01.T01:intron 30.0%
TTTGATGAGAGCTTAATCAT+AGG - Chr1:9221163-9221182 MsG0180000651.01.T01:intron 30.0%
! AGTATGACCAACAACATTTT+TGG + Chr1:9220494-9220513 None:intergenic 30.0%
! GAACGCAATCTATAATGTTT+TGG + Chr1:9219396-9219415 None:intergenic 30.0%
! GTGATATTTTTCATAAGTGG+AGG + Chr1:9219997-9220016 None:intergenic 30.0%
! TTTTGGTACAGTTTTCAAAG+GGG - Chr1:9221195-9221214 MsG0180000651.01.T01:CDS 30.0%
!! GTTGTTTAAGCTCTAAAAAG+TGG - Chr1:9220450-9220469 MsG0180000651.01.T01:intron 30.0%
!! GTTTTGGTACAGTTTTCAAA+GGG - Chr1:9221194-9221213 MsG0180000651.01.T01:CDS 30.0%
AAATTCTTTACGCAGAATGG+AGG - Chr1:9221046-9221065 MsG0180000651.01.T01:intron 35.0%
AAGAACACTCTTAATTCCGA+GGG - Chr1:9218642-9218661 MsG0180000651.01.T01:CDS 35.0%
AAGACCATATAGTCCCTTAT+CGG + Chr1:9218622-9218641 None:intergenic 35.0%
AAGGGACAATATACCGATAA+GGG - Chr1:9218606-9218625 MsG0180000651.01.T01:CDS 35.0%
AAGGTGTAGAAAAAAGGAGA+AGG - Chr1:9219066-9219085 MsG0180000651.01.T01:CDS 35.0%
AAGTCCACCAAAAATGTTGT+TGG - Chr1:9220484-9220503 MsG0180000651.01.T01:intron 35.0%
AATAACACTGGAAAATGCAC+AGG - Chr1:9219946-9219965 MsG0180000651.01.T01:intron 35.0%
ACAACCCAATTAACAACCAT+AGG + Chr1:9220149-9220168 None:intergenic 35.0%
AGCTTAATCATAGGTAAAGG+AGG - Chr1:9221172-9221191 MsG0180000651.01.T01:intron 35.0%
AGGCATAGTTATCTGTAGTT+TGG + Chr1:9220196-9220215 None:intergenic 35.0%
ATATATTTGGATGCAGGAGT+AGG - Chr1:9220944-9220963 MsG0180000651.01.T01:intron 35.0%
CAACCCAATTAACAACCATA+GGG + Chr1:9220148-9220167 None:intergenic 35.0%
CTTAACGGAAAACTAATGGA+AGG - Chr1:9218913-9218932 MsG0180000651.01.T01:intron 35.0%
CTTTCCCTATGGTTGTTAAT+TGG - Chr1:9220141-9220160 MsG0180000651.01.T01:intron 35.0%
GAGAAATTCTTTACGCAGAA+TGG - Chr1:9221043-9221062 MsG0180000651.01.T01:intron 35.0%
GAGAGCTTAATCATAGGTAA+AGG - Chr1:9221169-9221188 MsG0180000651.01.T01:intron 35.0%
GGCATAGTTATCTGTAGTTT+GGG + Chr1:9220195-9220214 None:intergenic 35.0%
GGTTCAATATATTTGGATGC+AGG - Chr1:9220938-9220957 MsG0180000651.01.T01:intron 35.0%
GTAAACGGAGAGATACTTAA+GGG - Chr1:9218946-9218965 MsG0180000651.01.T01:intron 35.0%
GTAAACGGAGAGATACTTAA+GGG + Chr1:9218965-9218946 None:intergenic 35.0%
GTATTTACCCTAATTCCGAA+GGG - Chr1:9219038-9219057 MsG0180000651.01.T01:CDS 35.0%
TAAGAACACTCTTAATTCCG+AGG - Chr1:9218641-9218660 MsG0180000651.01.T01:CDS 35.0%
TATACCGATAAGGGACTATA+TGG - Chr1:9218615-9218634 MsG0180000651.01.T01:CDS 35.0%
TATTACTGTTGGAACATGTG+TGG + Chr1:9219741-9219760 None:intergenic 35.0%
TGTATTTACCCTAATTCCGA+AGG - Chr1:9219037-9219056 MsG0180000651.01.T01:CDS 35.0%
TTATCGGTATATTGTCCCTT+CGG + Chr1:9218606-9218625 None:intergenic 35.0%
TTCTCTCACAATTTCAAGCA+CGG - Chr1:9219798-9219817 MsG0180000651.01.T01:intron 35.0%
! ACATTCACTATTTTCCTTGC+AGG + Chr1:9220216-9220235 None:intergenic 35.0%
! AGAGAAGGAACTCTAAGAAA+AGG + Chr1:9219784-9219803 None:intergenic 35.0%
! ATCATAGGTAAAGGAGGTTT+TGG - Chr1:9221178-9221197 MsG0180000651.01.T01:intron 35.0%
! GAAGCATCAACTGTGAATTT+CGG - Chr1:9219138-9219157 MsG0180000651.01.T01:CDS 35.0%
! GACAGAAAGGTGTAGAAAAA+AGG - Chr1:9219060-9219079 MsG0180000651.01.T01:CDS 35.0%
!! AAGACCATTTTTGATTCCGA+AGG - Chr1:9218587-9218606 MsG0180000651.01.T01:CDS 35.0%
!! AGACCATTTTTGATTCCGAA+GGG - Chr1:9218588-9218607 MsG0180000651.01.T01:CDS 35.0%
!! ATGACCAACAACATTTTTGG+TGG + Chr1:9220491-9220510 None:intergenic 35.0%
!! GGTTTTGGTACAGTTTTCAA+AGG - Chr1:9221193-9221212 MsG0180000651.01.T01:CDS 35.0%
!! TGTGTTTTGTTGCTTACCAA+GGG + Chr1:9220825-9220844 None:intergenic 35.0%
!!! AGGATCCTTGTTTTGCAATA+AGG + Chr1:9220079-9220098 None:intergenic 35.0%
ACCATAGGGAAAGTTCCATT+AGG + Chr1:9220134-9220153 None:intergenic 40.0%
ACCTAATGGAACTTTCCCTA+TGG - Chr1:9220130-9220149 MsG0180000651.01.T01:intron 40.0%
ACTGGAAAATGCACAGGTTT+AGG - Chr1:9219952-9219971 MsG0180000651.01.T01:intron 40.0%
CAAATAGTACTACCAACCCT+TGG - Chr1:9220806-9220825 MsG0180000651.01.T01:intron 40.0%
CCAAAGTCTGTATTTACCCT+CGG + Chr1:9219048-9219029 None:intergenic 40.0%
GAAATGGAACAAGGTTAGGA+GGG - Chr1:9220756-9220775 MsG0180000651.01.T01:intron 40.0%
GAAGGGACAATATACCGATA+AGG - Chr1:9218605-9218624 MsG0180000651.01.T01:CDS 40.0%
GCTCTCATCAAAGTTGTTAG+TGG + Chr1:9221155-9221174 None:intergenic 40.0%
GGTAAACGGAGAGATACTTA+AGG - Chr1:9218945-9218964 MsG0180000651.01.T01:intron 40.0%
GGTAAACGGAGAGATACTTA+AGG + Chr1:9218964-9218945 None:intergenic 40.0%
GTGCTTGAAATTGTGAGAGA+AGG + Chr1:9219799-9219818 None:intergenic 40.0%
TACAGATAACTATGCCTGCA+AGG - Chr1:9220199-9220218 MsG0180000651.01.T01:intron 40.0%
TATCTCTCCGTTTACCAAAG+CGG - Chr1:9218749-9218768 MsG0180000651.01.T01:CDS 40.0%
TCATAGACAGTGTAGAAGCT+GGG + Chr1:9220038-9220057 None:intergenic 40.0%
TGTCCCTTCGGAATCAAAAA+TGG + Chr1:9218594-9218613 None:intergenic 40.0%
TTCATAGACAGTGTAGAAGC+TGG + Chr1:9220039-9220058 None:intergenic 40.0%
TTTCTGTCCCTTCGGAATTA+GGG + Chr1:9219048-9219067 None:intergenic 40.0%
! GCAGAATGGAGGTTCTATTT+TGG - Chr1:9221057-9221076 MsG0180000651.01.T01:intron 40.0%
!! AACACTAGTTCTACCCAACA+TGG - Chr1:9219684-9219703 MsG0180000651.01.T01:CDS 40.0%
!! AAGGGTGCCATTTATTCAAC+TGG - Chr1:9219877-9219896 MsG0180000651.01.T01:intron 40.0%
!! AAGTGTTTGGCAGGTTTTGA+AGG - Chr1:9220271-9220290 MsG0180000651.01.T01:intron 40.0%
!! GTGTGTTTTGTTGCTTACCA+AGG + Chr1:9220826-9220845 None:intergenic 40.0%
!! TACACTTGTTTCTGTCCGAT+CGG - Chr1:9220725-9220744 MsG0180000651.01.T01:intron 40.0%
!! TTTTGTTGCTTACCAAGGGT+TGG + Chr1:9220821-9220840 None:intergenic 40.0%
ACGGTACAGATGCAAGTGTT+TGG - Chr1:9220258-9220277 MsG0180000651.01.T01:intron 45.0%
CCGAGGGTAAATACAGACTT+TGG - Chr1:9218658-9218677 MsG0180000651.01.T01:CDS 45.0%
CTAATTCCGAAGGGACAGAA+AGG - Chr1:9219047-9219066 MsG0180000651.01.T01:CDS 45.0%
CTCGGAAATGGAACAAGGTT+AGG - Chr1:9220752-9220771 MsG0180000651.01.T01:intron 45.0%
CTTTCTGTCCCTTCGGAATT+AGG + Chr1:9219049-9219068 None:intergenic 45.0%
GAAGGAAATCCATACCTTCC+CGG - Chr1:9220289-9220308 MsG0180000651.01.T01:intron 45.0%
GACTTGTCAACACAAGTCGA+AGG - Chr1:9219088-9219107 MsG0180000651.01.T01:CDS 45.0%
GGAAATGGAACAAGGTTAGG+AGG - Chr1:9220755-9220774 MsG0180000651.01.T01:intron 45.0%
TACAGATGCAAGTGTTTGGC+AGG - Chr1:9220262-9220281 MsG0180000651.01.T01:intron 45.0%
TATCTCTCCGTTTACCGAAG+CGG + Chr1:9218941-9218960 None:intergenic 45.0%
TCTACACCTTTCTGTCCCTT+CGG + Chr1:9219056-9219075 None:intergenic 45.0%
TGTCAACACAAGTCGAAGGA+GGG - Chr1:9219092-9219111 MsG0180000651.01.T01:CDS 45.0%
TTGTCAACACAAGTCGAAGG+AGG - Chr1:9219091-9219110 MsG0180000651.01.T01:CDS 45.0%
! ACTGTTGGTTGCGACAGTTA+CGG - Chr1:9219835-9219854 MsG0180000651.01.T01:intron 45.0%
! CAACTGTGAATTTCGGTGTG+TGG - Chr1:9219145-9219164 MsG0180000651.01.T01:CDS 45.0%
!! ACACTTGTTTCTGTCCGATC+GGG - Chr1:9220726-9220745 MsG0180000651.01.T01:intron 45.0%
!! AATGATTATTAATTAAAATT+AGG + Chr1:9220848-9220867 None:intergenic 5.0%
!!! TTGATATATATTTTATTATT+TGG + Chr1:9219452-9219471 None:intergenic 5.0%
ACTAATGGAAGGGACCGCTT+CGG - Chr1:9218924-9218943 MsG0180000651.01.T01:intron 50.0%
GAAGGGACCGCTTTGGTAAA+CGG + Chr1:9218759-9218778 None:intergenic 50.0%
GGCAACTCGGAAATGGAACA+AGG - Chr1:9220747-9220766 MsG0180000651.01.T01:intron 50.0%
GTGTGTGTTCCATCTGACGT+GGG - Chr1:9219555-9219574 MsG0180000651.01.T01:intron 50.0%
TGTGTGTGTTCCATCTGACG+TGG - Chr1:9219554-9219573 MsG0180000651.01.T01:intron 50.0%
TTAGTTACCTCTGCAGCCTC+CGG + Chr1:9220311-9220330 None:intergenic 50.0%
! AGTGGGGGTGTACCTCTAAT+AGG + Chr1:9219518-9219537 None:intergenic 50.0%
! GTGGGGGTGTACCTCTAATA+GGG + Chr1:9219517-9219536 None:intergenic 50.0%
AGTGGAAGTCCCACGTCAGA+TGG + Chr1:9219567-9219586 None:intergenic 55.0%
CCATTTCCGAGTTGCCCGAT+CGG + Chr1:9220743-9220762 None:intergenic 55.0%
CGAAGGAGGGAGAAGAAGAG+AGG - Chr1:9219105-9219124 MsG0180000651.01.T01:CDS 55.0%
CTTAACGGAAGGGACCGCTT+TGG + Chr1:9218766-9218785 None:intergenic 55.0%
GAAGGGACCGCTTCGGTAAA+CGG - Chr1:9218931-9218950 MsG0180000651.01.T01:intron 55.0%
GGAAATCCATACCTTCCCGG+AGG - Chr1:9220292-9220311 MsG0180000651.01.T01:intron 55.0%
TAGTTACCTCTGCAGCCTCC+GGG + Chr1:9220310-9220329 None:intergenic 55.0%
TTCTGTCCGATCGGGCAACT+CGG - Chr1:9220734-9220753 MsG0180000651.01.T01:intron 55.0%
! GGAGGGTGCAAAGTACCTGA+TGG - Chr1:9220773-9220792 MsG0180000651.01.T01:intron 55.0%
CCGATCGGGCAACTCGGAAA+TGG - Chr1:9220740-9220759 MsG0180000651.01.T01:intron 60.0%
CTGCAGCCTCCGGGAAGGTA+TGG + Chr1:9220301-9220320 None:intergenic 65.0%
TACCTCTGCAGCCTCCGGGA+AGG + Chr1:9220306-9220325 None:intergenic 65.0%
TACCTTCCCGGAGGCTGCAG+AGG - Chr1:9220301-9220320 MsG0180000651.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 9218579 9221264 9218579 ID=MsG0180000651.01;Name=MsG0180000651.01
Chr1 mRNA 9218579 9221264 9218579 ID=MsG0180000651.01.T01;Parent=MsG0180000651.01;Name=MsG0180000651.01.T01;_AED=0.54;_eAED=0.54;_QI=0|0|0|0.75|1|1|4|0|236
Chr1 exon 9221180 9221264 9221180 ID=MsG0180000651.01.T01:exon:1974;Parent=MsG0180000651.01.T01
Chr1 exon 9219583 9219729 9219583 ID=MsG0180000651.01.T01:exon:1975;Parent=MsG0180000651.01.T01
Chr1 exon 9219016 9219189 9219016 ID=MsG0180000651.01.T01:exon:1976;Parent=MsG0180000651.01.T01
Chr1 exon 9218579 9218883 9218579 ID=MsG0180000651.01.T01:exon:1977;Parent=MsG0180000651.01.T01
Chr1 CDS 9221180 9221264 9221180 ID=MsG0180000651.01.T01:cds;Parent=MsG0180000651.01.T01
Chr1 CDS 9219583 9219729 9219583 ID=MsG0180000651.01.T01:cds;Parent=MsG0180000651.01.T01
Chr1 CDS 9219016 9219189 9219016 ID=MsG0180000651.01.T01:cds;Parent=MsG0180000651.01.T01
Chr1 CDS 9218579 9218883 9218579 ID=MsG0180000651.01.T01:cds;Parent=MsG0180000651.01.T01
Gene Sequence

>MsG0180000651.01.T01

ATGCTCTTAAGACCATTTTTGATTCCGAAGGGACAATATACCGATAAGGGACTATATGGTCTTAAGAACACTCTTAATTCCGAGGAACATATAAAGAAACTACCTAATGGAACTTTCCCTATGGTTGTTAATTGGGTTGTTACAAATGAATCGTGTCAAATAGCCCAAACTACAGATAACTATGCCTGCAAGGAAAATAGTGAATGTGTTGATAAAGATTCAGATTATGACGACATTAACGAGTGTGCGACATCAAATCATACATGCCTAAGTAAAGCAAATTGTAATAACACTTTTGGGAATTACACTTGTTTCTGTCCGATCGGGCAACTCGGAAATGGAACAAGGTTAGGAGGGTGCAAAGTACCTGATGGAAATGCATATCAAATAGTACTACCAACCCTTGGAGTAGGAGCAGTATTTATTGTTCTATTTGTGTGGATAATTTCCTACTTAATTTACCAAAAAAGGAAACTTGTCAAATTGAAAGAGAAATTCTTTACGCAGAATGGAGGTTCTATTTTGGAACAGAAACTTCGTCAAAGAAAAGACTCGTCTCAAATAGCTCACATTTTCAAAGAAAATGAACTAAAAAAAGCCACTAACAACTTTGATGAGAGCTTAATCATAGGTAAAGGAGGTTTTGGTACAGTTTTCAAAGGGGAACTTGATGATAATAGAATTGTTGCTATCAAAAAGTCCAAACAATAG
Protein sequence

>MsG0180000651.01.T01

MLLRPFLIPKGQYTDKGLYGLKNTLNSEEHIKKLPNGTFPMVVNWVVTNESCQIAQTTDNYACKENSECVDKDSDYDDINECATSNHTCLSKANCNNTFGNYTCFCPIGQLGNGTRLGGCKVPDGNAYQIVLPTLGVGAVFIVLFVWIISYLIYQKRKLVKLKEKFFTQNGGSILEQKLRQRKDSSQIAHIFKENELKKATNNFDESLIIGKGGFGTVFKGELDDNRIVAIKKSKQ*