AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000526.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000526.01.T01 MTR_1g013790 91.270 252 20 2 1 251 5 255 6.78e-173 476
MsG0180000526.01.T01 MTR_1g013760 46.626 163 74 4 78 234 122 277 9.82e-42 144
MsG0180000526.01.T01 MTR_4g007060 36.466 266 131 4 2 229 45 310 2.38e-41 144
MsG0180000526.01.T01 MTR_4g007060 36.226 265 131 4 3 229 12 276 5.21e-41 142
MsG0180000526.01.T01 MTR_2g105060 37.121 264 123 6 2 229 53 309 9.39e-40 140
MsG0180000526.01.T01 MTR_2g105060 45.399 163 68 3 81 229 79 234 2.34e-39 137
MsG0180000526.01.T01 MTR_3g106060 41.250 160 83 2 81 229 123 282 3.18e-37 132
MsG0180000526.01.T01 MTR_7g110720 41.975 162 81 5 2 156 94 249 1.88e-32 122
MsG0180000526.01.T01 MTR_7g110720 38.378 185 82 6 2 156 94 276 2.47e-30 117
MsG0180000526.01.T01 MTR_3g053330 48.421 95 47 1 78 172 235 327 1.04e-26 107
MsG0180000526.01.T01 MTR_4g107970 52.439 82 37 1 75 156 159 238 2.19e-25 104
MsG0180000526.01.T01 MTR_4g107970 52.439 82 37 1 75 156 236 315 3.12e-25 104
MsG0180000526.01.T01 MTR_4g094412 42.342 111 52 2 56 156 186 294 4.19e-25 103
MsG0180000526.01.T01 MTR_4g094412 42.342 111 52 2 56 156 195 303 4.20e-25 103
MsG0180000526.01.T01 MTR_4g132430 55.263 76 32 1 81 156 114 187 1.53e-24 100
MsG0180000526.01.T01 MTR_2g023930 54.795 73 33 0 84 156 293 365 2.51e-24 101
MsG0180000526.01.T01 MTR_4g132430 54.795 73 33 0 84 156 249 321 4.60e-24 100
MsG0180000526.01.T01 MTR_4g007060 40.000 155 70 1 2 133 45 199 5.93e-24 96.7
MsG0180000526.01.T01 MTR_2g045360 50.575 87 40 2 94 180 209 292 3.81e-23 97.4
MsG0180000526.01.T01 MTR_2g088000 52.055 73 35 0 84 156 337 409 4.83e-23 98.2
MsG0180000526.01.T01 MTR_7g009730 61.017 59 23 0 95 153 218 276 7.97e-23 97.4
MsG0180000526.01.T01 MTR_4g049760 57.143 63 27 0 94 156 288 350 1.61e-22 96.3
MsG0180000526.01.T01 MTR_4g049790 53.030 66 31 0 91 156 307 372 1.86e-21 93.2
MsG0180000526.01.T01 MTR_5g097490 50.000 76 35 2 81 156 239 311 1.21e-19 87.4
MsG0180000526.01.T01 MTR_5g097490 42.029 69 38 2 94 162 90 156 7.76e-11 62.0
MsG0180000526.01.T01 MTR_5g074400 52.381 63 29 1 94 156 418 479 3.52e-19 86.7
MsG0180000526.01.T01 MTR_5g074400 48.333 60 29 2 97 156 244 301 1.69e-12 67.0
MsG0180000526.01.T01 MTR_5g094430 42.424 99 46 4 66 156 194 289 3.90e-19 86.3
MsG0180000526.01.T01 MTR_5g094430 42.424 99 46 4 66 156 216 311 4.34e-19 86.3
MsG0180000526.01.T01 MTR_3g056100 43.011 93 47 3 67 156 385 474 5.02e-19 86.3
MsG0180000526.01.T01 MTR_3g056100 43.011 93 47 3 67 156 372 461 5.15e-19 86.3
MsG0180000526.01.T01 MTR_3g056100 43.011 93 47 3 67 156 241 330 5.59e-19 85.9
MsG0180000526.01.T01 MTR_5g094430 42.424 99 46 4 66 156 328 423 5.66e-19 86.3
MsG0180000526.01.T01 MTR_3g056100 43.011 93 47 3 67 156 228 317 5.69e-19 85.9
MsG0180000526.01.T01 MTR_2g033820 45.745 94 43 3 95 181 202 294 6.09e-18 82.4
MsG0180000526.01.T01 MTR_3g009470 47.945 73 37 1 84 156 483 554 1.03e-17 82.4
MsG0180000526.01.T01 MTR_3g009470 42.667 75 34 3 89 156 266 338 1.09e-11 64.7
MsG0180000526.01.T01 MTR_4g013260 46.575 73 38 1 84 156 324 395 2.07e-17 81.3
MsG0180000526.01.T01 MTR_4g013260 45.902 61 32 1 96 156 184 243 2.10e-12 66.6
MsG0180000526.01.T01 MTR_7g071120 46.575 73 38 1 84 156 312 383 2.76e-17 81.3
MsG0180000526.01.T01 MTR_7g071120 34.058 138 63 7 83 220 158 267 5.15e-12 65.5
MsG0180000526.01.T01 MTR_3g031220 49.206 63 31 1 94 156 363 424 2.95e-17 80.9
MsG0180000526.01.T01 MTR_3g031220 50.000 60 28 2 97 156 199 256 6.45e-13 68.2
MsG0180000526.01.T01 MTR_7g011820 40.952 105 53 4 69 167 382 483 3.18e-17 80.9
MsG0180000526.01.T01 MTR_7g011820 48.333 60 29 2 97 156 229 286 4.25e-11 62.8
MsG0180000526.01.T01 MTR_4g094908 51.613 62 30 0 94 155 264 325 3.44e-17 80.1
MsG0180000526.01.T01 MTR_1g086790 50.769 65 31 1 95 159 157 220 5.17e-17 79.3
MsG0180000526.01.T01 MTR_2g024350 46.970 66 35 0 91 156 3 68 6.38e-17 77.4
MsG0180000526.01.T01 MTR_1g070455 48.485 66 33 1 94 158 291 356 1.37e-16 78.6
MsG0180000526.01.T01 MTR_2g024380 50.820 61 30 0 96 156 251 311 1.40e-16 79.0
MsG0180000526.01.T01 MTR_7g079010 53.333 60 27 1 94 153 139 197 1.91e-16 76.3
MsG0180000526.01.T01 MTR_7g080020 49.206 63 31 1 94 156 491 552 2.36e-16 78.6
MsG0180000526.01.T01 MTR_7g080020 43.750 80 41 3 96 175 280 355 2.55e-12 66.6
MsG0180000526.01.T01 MTR_5g042920 40.404 99 49 3 66 156 283 379 2.45e-16 78.2
MsG0180000526.01.T01 MTR_5g042920 35.922 103 58 3 97 199 152 246 6.67e-14 70.9
MsG0180000526.01.T01 MTR_5g016610 50.000 62 31 0 94 155 197 258 3.09e-16 76.6
MsG0180000526.01.T01 MTR_7g109800 46.053 76 38 2 95 170 144 216 3.96e-16 76.6
MsG0180000526.01.T01 MTR_4g094588 41.111 90 43 3 95 175 177 265 4.10e-16 77.0
MsG0180000526.01.T01 MTR_7g028415 48.387 62 31 1 94 155 91 151 4.74e-16 73.9
MsG0180000526.01.T01 MTR_7g028710 48.387 62 31 1 94 155 91 151 4.74e-16 73.9
MsG0180000526.01.T01 MTR_1g015140 48.333 60 30 1 94 153 100 158 4.80e-16 73.6
MsG0180000526.01.T01 MTR_7g080000 47.619 63 32 1 94 156 430 491 4.97e-16 77.8
MsG0180000526.01.T01 MTR_7g080000 41.975 81 43 3 95 175 233 309 7.45e-13 68.2
MsG0180000526.01.T01 MTR_4g082580 42.683 82 43 3 75 156 260 337 5.40e-16 77.0
MsG0180000526.01.T01 MTR_5g091390 48.387 62 31 1 95 156 156 216 6.83e-16 75.9
MsG0180000526.01.T01 MTR_2g016770 48.333 60 31 0 97 156 36 95 8.15e-16 74.3
MsG0180000526.01.T01 MTR_2g016770 48.333 60 31 0 97 156 28 87 9.33e-16 73.9
MsG0180000526.01.T01 MTR_7g100510 46.970 66 34 1 91 156 356 420 1.32e-15 75.9
MsG0180000526.01.T01 MTR_7g100510 48.571 70 34 2 97 166 190 257 6.61e-15 73.9
MsG0180000526.01.T01 MTR_1g009613 46.774 62 33 0 94 155 260 321 2.09e-15 75.1
MsG0180000526.01.T01 MTR_8g087000 48.333 60 31 0 97 156 77 136 2.18e-15 73.6
MsG0180000526.01.T01 MTR_8g087000 48.333 60 31 0 97 156 78 137 2.18e-15 73.6
MsG0180000526.01.T01 MTR_0117s0040 51.667 60 29 0 94 153 72 131 4.65e-15 72.8
MsG0180000526.01.T01 MTR_3g095080 44.615 65 35 1 94 158 142 205 5.38e-15 72.0
MsG0180000526.01.T01 MTR_3g095080 44.615 65 35 1 94 158 166 229 5.81e-15 72.4
MsG0180000526.01.T01 MTR_3g104750 46.667 60 31 1 94 153 102 160 7.61e-15 70.5
MsG0180000526.01.T01 MTR_5g043880 37.615 109 57 4 95 193 123 230 7.76e-15 72.8
MsG0180000526.01.T01 MTR_8g007270 43.939 66 36 1 94 159 152 216 9.63e-15 71.6
MsG0180000526.01.T01 MTR_3g108960 50.000 60 30 0 94 153 312 371 1.12e-14 73.2
MsG0180000526.01.T01 MTR_8g092140 43.077 65 36 1 94 158 158 221 1.36e-14 71.2
MsG0180000526.01.T01 MTR_1g077780 44.444 63 34 1 94 156 60 121 1.66e-14 69.3
MsG0180000526.01.T01 MTR_4g047580 42.424 66 38 0 91 156 276 341 3.78e-14 72.0
MsG0180000526.01.T01 MTR_7g109600 48.333 60 31 0 97 156 54 113 3.79e-14 70.5
MsG0180000526.01.T01 MTR_4g130900 46.032 63 33 1 94 156 357 418 3.87e-14 72.0
MsG0180000526.01.T01 MTR_2g083870 45.455 66 36 0 91 156 75 140 4.19e-14 70.5
MsG0180000526.01.T01 MTR_4g122530 40.506 79 44 2 78 156 192 267 4.93e-14 71.2
MsG0180000526.01.T01 MTR_4g127040 47.541 61 32 0 94 154 243 303 7.68e-14 70.1
MsG0180000526.01.T01 MTR_8g092010 35.897 117 64 5 40 156 62 167 1.27e-13 67.8
MsG0180000526.01.T01 MTR_2g032030 43.939 66 37 0 93 158 264 329 1.35e-13 70.1
MsG0180000526.01.T01 MTR_2g032030 43.939 66 37 0 93 158 264 329 1.40e-13 70.1
MsG0180000526.01.T01 MTR_7g062220 50.877 57 27 1 97 153 125 180 1.50e-13 69.3
MsG0180000526.01.T01 MTR_8g096730 42.029 69 37 2 94 160 68 135 2.00e-13 66.2
MsG0180000526.01.T01 MTR_7g079040 34.951 103 56 1 54 156 123 214 2.52e-13 68.9
MsG0180000526.01.T01 MTR_8g098945 42.169 83 43 1 97 179 130 207 3.31e-13 68.2
MsG0180000526.01.T01 MTR_3g095040 43.284 67 37 1 94 160 116 181 4.02e-13 66.6
MsG0180000526.01.T01 MTR_3g031220 50.000 60 28 2 97 156 199 256 4.30e-13 68.6
MsG0180000526.01.T01 MTR_8g028565 45.902 61 33 0 97 157 156 216 4.65e-13 68.2
MsG0180000526.01.T01 MTR_6g086555 34.737 95 58 3 63 156 175 266 6.48e-13 68.2
MsG0180000526.01.T01 MTR_1g099600 43.333 60 34 0 97 156 186 245 5.27e-12 65.1
MsG0180000526.01.T01 MTR_5g074200 42.857 70 38 2 97 166 221 288 6.05e-12 64.7
MsG0180000526.01.T01 MTR_3g009470 47.541 61 30 2 96 156 280 338 8.69e-12 65.1
MsG0180000526.01.T01 MTR_8g067635 47.619 63 33 0 94 156 347 409 1.14e-11 64.7
MsG0180000526.01.T01 MTR_8g067650 47.619 63 33 0 94 156 337 399 1.29e-11 64.3
MsG0180000526.01.T01 MTR_6g053200 35.398 113 63 3 57 164 291 398 3.67e-11 63.2
MsG0180000526.01.T01 MTR_1g078260 35.870 92 55 3 64 154 217 305 4.54e-11 62.8
MsG0180000526.01.T01 MTR_3g090860 33.333 105 66 2 95 195 132 236 5.64e-11 62.0
MsG0180000526.01.T01 MTR_8g069935 42.623 61 35 0 96 156 331 391 9.69e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000526.01.T01 AT1G80840 36.996 273 135 5 2 237 27 299 2.64e-45 154
MsG0180000526.01.T01 AT4G31800 49.351 154 70 2 82 235 97 242 3.46e-42 144
MsG0180000526.01.T01 AT4G31800 49.351 154 70 2 82 235 162 307 1.15e-41 145
MsG0180000526.01.T01 AT2G25000 36.923 260 114 8 2 239 39 270 2.20e-37 132
MsG0180000526.01.T01 AT2G25000 42.623 183 77 6 57 239 73 227 4.86e-37 130
MsG0180000526.01.T01 AT2G25000 42.623 183 77 6 57 239 73 227 4.86e-37 130
MsG0180000526.01.T01 AT2G25000 43.169 183 76 6 57 239 95 249 2.10e-36 129
MsG0180000526.01.T01 AT4G04450 47.191 89 47 0 84 172 186 274 4.36e-26 105
MsG0180000526.01.T01 AT4G04450 47.191 89 47 0 84 172 280 368 1.12e-25 105
MsG0180000526.01.T01 AT4G22070 56.164 73 32 0 84 156 285 357 3.10e-25 104
MsG0180000526.01.T01 AT4G22070 56.164 73 32 0 84 156 285 357 3.10e-25 104
MsG0180000526.01.T01 AT4G22070 56.164 73 32 0 84 156 285 357 3.10e-25 104
MsG0180000526.01.T01 AT4G22070 56.164 73 32 0 84 156 285 357 3.10e-25 104
MsG0180000526.01.T01 AT1G62300 56.164 73 32 0 84 156 300 372 3.32e-25 104
MsG0180000526.01.T01 AT1G68150 48.810 84 43 0 73 156 212 295 9.54e-25 101
MsG0180000526.01.T01 AT1G18860 53.165 79 35 1 78 156 223 299 2.79e-23 98.6
MsG0180000526.01.T01 AT5G15130 58.065 62 26 0 95 156 184 245 4.97e-23 97.8
MsG0180000526.01.T01 AT5G15130 58.065 62 26 0 95 156 226 287 5.04e-23 97.8
MsG0180000526.01.T01 AT4G31800 75.000 52 13 0 82 133 162 213 5.42e-23 94.4
MsG0180000526.01.T01 AT4G01720 45.000 100 51 2 61 156 200 299 2.77e-22 95.5
MsG0180000526.01.T01 AT1G69810 34.783 161 96 5 3 159 54 209 1.90e-21 91.7
MsG0180000526.01.T01 AT1G69810 33.962 159 98 4 12 166 119 274 2.09e-21 92.4
MsG0180000526.01.T01 AT2G04880 38.053 113 58 3 94 205 281 382 5.83e-20 89.0
MsG0180000526.01.T01 AT2G04880 42.857 63 34 2 94 156 109 169 4.87e-11 62.8
MsG0180000526.01.T01 AT2G04880 43.011 93 42 2 94 186 305 386 6.85e-20 88.6
MsG0180000526.01.T01 AT2G04880 42.857 63 34 2 94 156 109 169 5.70e-11 62.4
MsG0180000526.01.T01 AT2G38470 42.353 85 39 2 94 178 360 434 9.29e-19 85.5
MsG0180000526.01.T01 AT2G38470 40.506 79 37 3 86 156 166 242 7.85e-13 68.2
MsG0180000526.01.T01 AT4G26640 42.708 96 49 2 66 156 170 264 1.35e-18 84.3
MsG0180000526.01.T01 AT4G26640 42.708 96 49 2 66 156 170 264 1.35e-18 84.3
MsG0180000526.01.T01 AT4G26640 42.708 96 49 2 66 156 170 264 1.35e-18 84.3
MsG0180000526.01.T01 AT4G26640 42.708 96 49 2 66 156 170 264 1.35e-18 84.3
MsG0180000526.01.T01 AT5G56270 52.381 63 29 1 94 156 485 546 1.43e-18 85.1
MsG0180000526.01.T01 AT4G26640 42.708 96 49 2 66 156 274 368 2.15e-18 84.3
MsG0180000526.01.T01 AT4G26640 42.708 96 49 2 66 156 306 400 2.51e-18 84.3
MsG0180000526.01.T01 AT4G26640 42.708 96 49 2 66 156 346 440 2.64e-18 84.3
MsG0180000526.01.T01 AT3G04670 40.000 105 58 1 49 153 220 319 1.57e-17 80.9
MsG0180000526.01.T01 AT5G28650 51.667 60 29 0 94 153 260 319 3.17e-17 80.1
MsG0180000526.01.T01 AT1G64000 45.205 73 37 2 81 153 101 170 3.87e-17 77.4
MsG0180000526.01.T01 AT5G41570 41.000 100 49 4 54 153 65 154 4.17e-17 77.0
MsG0180000526.01.T01 AT1G29860 48.387 62 31 1 95 156 135 195 6.33e-17 78.6
MsG0180000526.01.T01 AT2G03340 47.143 70 36 1 87 156 406 474 1.12e-16 79.3
MsG0180000526.01.T01 AT2G03340 37.736 106 55 5 60 156 205 308 1.11e-14 73.6
MsG0180000526.01.T01 AT2G30590 50.000 60 30 0 94 153 311 370 1.48e-16 78.6
MsG0180000526.01.T01 AT5G13080 48.387 62 31 1 94 155 65 125 1.78e-16 74.3
MsG0180000526.01.T01 AT4G18170 45.161 62 33 1 95 156 171 231 2.27e-16 77.4
MsG0180000526.01.T01 AT1G13960 47.619 63 32 1 94 156 407 468 2.59e-16 78.2
MsG0180000526.01.T01 AT1G13960 43.210 81 35 4 76 156 218 287 1.11e-12 67.8
MsG0180000526.01.T01 AT1G13960 45.714 70 37 1 87 156 247 315 2.97e-16 77.4
MsG0180000526.01.T01 AT1G13960 43.210 81 35 4 76 156 65 134 1.35e-12 67.0
MsG0180000526.01.T01 AT2G47260 44.578 83 45 1 95 177 173 254 3.40e-16 77.0
MsG0180000526.01.T01 AT3G62340 39.796 98 53 2 91 183 113 209 3.70e-16 76.3
MsG0180000526.01.T01 AT3G01080 45.714 70 37 1 87 156 297 365 4.62e-16 77.4
MsG0180000526.01.T01 AT2G23320 49.153 59 30 0 97 155 241 299 4.76e-16 76.6
MsG0180000526.01.T01 AT3G01080 45.714 70 37 1 87 156 335 403 4.80e-16 77.4
MsG0180000526.01.T01 AT2G30250 40.698 86 48 2 71 156 305 387 6.31e-16 77.0
MsG0180000526.01.T01 AT2G30250 39.130 92 44 3 97 188 167 246 1.40e-11 64.3
MsG0180000526.01.T01 AT5G07100 42.029 69 39 1 94 162 139 206 1.90e-15 73.6
MsG0180000526.01.T01 AT5G07100 48.571 70 34 2 97 166 25 92 5.29e-13 66.6
MsG0180000526.01.T01 AT5G07100 42.029 69 39 1 94 162 139 206 1.90e-15 73.6
MsG0180000526.01.T01 AT5G07100 48.571 70 34 2 97 166 25 92 5.29e-13 66.6
MsG0180000526.01.T01 AT5G07100 42.029 69 39 1 94 162 139 206 1.90e-15 73.6
MsG0180000526.01.T01 AT5G07100 48.571 70 34 2 97 166 25 92 5.29e-13 66.6
MsG0180000526.01.T01 AT5G07100 42.029 69 39 1 94 162 139 206 1.90e-15 73.6
MsG0180000526.01.T01 AT5G07100 48.571 70 34 2 97 166 25 92 5.29e-13 66.6
MsG0180000526.01.T01 AT5G46350 43.548 62 34 1 95 156 182 242 2.53e-15 74.7
MsG0180000526.01.T01 AT5G07100 44.444 63 34 1 94 156 232 293 2.64e-15 74.3
MsG0180000526.01.T01 AT5G07100 48.571 70 34 2 97 166 118 185 1.21e-12 66.6
MsG0180000526.01.T01 AT2G24570 48.333 60 31 0 94 153 241 300 2.65e-15 74.3
MsG0180000526.01.T01 AT5G49520 46.774 62 32 1 95 156 220 280 2.82e-15 75.1
MsG0180000526.01.T01 AT4G31550 48.333 60 31 0 94 153 244 303 2.93e-15 74.3
MsG0180000526.01.T01 AT2G44745 43.478 69 38 1 94 162 143 210 2.98e-15 72.8
MsG0180000526.01.T01 AT4G31550 48.333 60 31 0 94 153 243 302 3.05e-15 74.3
MsG0180000526.01.T01 AT3G01970 46.377 69 34 2 94 160 63 130 3.26e-15 71.2
MsG0180000526.01.T01 AT4G24240 45.161 62 34 0 94 155 279 340 3.37e-15 74.3
MsG0180000526.01.T01 AT2G46130 39.560 91 46 3 63 153 5 86 3.96e-15 69.7
MsG0180000526.01.T01 AT5G26170 43.750 64 35 1 94 157 111 173 4.32e-15 71.6
MsG0180000526.01.T01 AT4G30935 46.032 63 33 1 94 156 329 390 5.45e-15 74.3
MsG0180000526.01.T01 AT2G37260 47.059 68 35 1 86 153 257 323 6.59e-15 73.6
MsG0180000526.01.T01 AT2G37260 44.444 72 36 3 86 157 75 142 1.59e-12 66.6
MsG0180000526.01.T01 AT2G37260 47.059 68 35 1 86 153 259 325 6.67e-15 73.6
MsG0180000526.01.T01 AT2G37260 44.444 72 36 3 86 157 77 144 1.62e-12 66.6
MsG0180000526.01.T01 AT2G37260 47.059 68 35 1 86 153 339 405 7.05e-15 73.9
MsG0180000526.01.T01 AT2G37260 47.541 61 30 2 97 157 166 224 1.61e-12 67.0
MsG0180000526.01.T01 AT1G55600 51.667 60 28 1 97 156 308 366 1.19e-14 73.6
MsG0180000526.01.T01 AT1G29280 46.667 60 32 0 97 156 75 134 1.72e-14 71.6
MsG0180000526.01.T01 AT1G69310 47.458 59 30 1 95 153 146 203 2.23e-14 71.6
MsG0180000526.01.T01 AT1G69310 47.458 59 30 1 95 153 146 203 2.23e-14 71.6
MsG0180000526.01.T01 AT1G69310 47.458 59 30 1 95 153 146 203 2.23e-14 71.6
MsG0180000526.01.T01 AT4G26440 38.596 114 57 4 66 171 336 444 7.88e-14 71.2
MsG0180000526.01.T01 AT4G26440 33.628 113 64 4 97 204 179 285 5.50e-11 62.8
MsG0180000526.01.T01 AT3G58710 37.634 93 58 0 67 159 41 133 8.86e-14 69.7
MsG0180000526.01.T01 AT3G58710 47.619 63 33 0 97 159 72 134 1.08e-13 69.3
MsG0180000526.01.T01 AT2G21900 38.462 78 47 1 80 157 93 169 1.37e-13 68.2
MsG0180000526.01.T01 AT4G39410 43.077 65 36 1 94 158 221 284 1.71e-13 69.3
MsG0180000526.01.T01 AT2G34830 43.939 66 37 0 93 158 212 277 1.80e-13 69.7
MsG0180000526.01.T01 AT2G34830 43.939 66 37 0 93 158 221 286 1.98e-13 69.7
MsG0180000526.01.T01 AT1G30650 45.312 64 35 0 93 156 214 277 4.03e-13 68.9
MsG0180000526.01.T01 AT5G43290 43.077 65 36 1 89 153 107 170 6.48e-13 67.4
MsG0180000526.01.T01 AT5G64810 41.667 60 34 1 94 153 108 166 7.18e-13 65.9
MsG0180000526.01.T01 AT4G01250 41.176 85 49 1 97 180 129 213 1.15e-12 66.6
MsG0180000526.01.T01 AT5G52830 46.667 60 32 0 97 156 166 225 3.02e-12 65.9
MsG0180000526.01.T01 AT4G23550 41.270 63 37 0 94 156 138 200 3.41e-12 65.5
MsG0180000526.01.T01 AT5G45050 45.000 60 33 0 97 156 1042 1101 9.85e-12 65.1
MsG0180000526.01.T01 AT5G45050 45.000 60 33 0 97 156 1181 1240 1.04e-11 65.1
MsG0180000526.01.T01 AT5G45050 45.000 60 33 0 97 156 1153 1212 1.07e-11 65.1
MsG0180000526.01.T01 AT2G46400 37.000 100 56 3 80 177 90 184 6.43e-11 61.6
MsG0180000526.01.T01 AT4G12020 31.731 104 69 2 87 190 459 560 7.16e-11 62.8
MsG0180000526.01.T01 AT4G12020 31.731 104 69 2 87 190 459 560 7.16e-11 62.8
MsG0180000526.01.T01 AT4G12020 31.731 104 69 2 87 190 459 560 7.58e-11 62.4
MsG0180000526.01.T01 AT4G12020 31.731 104 69 2 87 190 459 560 7.79e-11 62.4
MsG0180000526.01.T01 AT4G12020 31.731 104 69 2 87 190 459 560 7.79e-11 62.4
MsG0180000526.01.T01 AT4G12020 31.731 104 69 2 87 190 459 560 8.27e-11 62.4
MsG0180000526.01.T01 AT4G12020 31.731 104 69 2 87 190 459 560 8.35e-11 62.4
MsG0180000526.01.T01 AT4G12020 31.731 104 69 2 87 190 459 560 8.43e-11 62.4
MsG0180000526.01.T01 AT4G12020 31.731 104 69 2 87 190 392 493 8.56e-11 62.4
MsG0180000526.01.T01 AT4G12020 31.731 104 69 2 87 190 459 560 8.99e-11 62.4
MsG0180000526.01.T01 AT4G12020 31.731 104 69 2 87 190 459 560 9.08e-11 62.4

Find 45 sgRNAs with CRISPR-Local

Find 67 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAGTTCAAATCATCAAAT+TGG 0.204407 1:+7425602 MsG0180000526.01.T01:CDS
CATACCAAACTTTCATCATT+AGG 0.285634 1:-7425713 None:intergenic
GATGGTTTAAATGACTCATT+AGG 0.290756 1:-7426340 None:intergenic
TTAGAGATTGATGAACCTTT+AGG 0.306541 1:-7426373 None:intergenic
CTTCTCCTAGAGCTTACTTT+AGG 0.314347 1:+7426037 MsG0180000526.01.T01:CDS
TGAAGTCAGGATCTTTGATT+AGG 0.319072 1:-7426513 None:intergenic
AAATCTCGATTTGAATCTTT+CGG 0.326816 1:+7426600 MsG0180000526.01.T01:CDS
CTCACAAAGTCTAGTATTTG+TGG 0.333230 1:-7426431 None:intergenic
CCTTGTTGATCTCTTGAAGA+TGG 0.350551 1:-7425565 None:intergenic
TCAACCTAATGATGAAAGTT+TGG 0.350703 1:+7425709 MsG0180000526.01.T01:CDS
GGCTATCAATGGAGGAAGTA+TGG 0.366288 1:+7425991 MsG0180000526.01.T01:CDS
TCTAGGAGAAGCATTGTCTT+TGG 0.371896 1:-7426025 None:intergenic
TCTTTGTCATTCAATGTTGT+TGG 0.386703 1:-7426406 None:intergenic
CTTGTTGATCTCTTGAAGAT+GGG 0.396728 1:-7425564 None:intergenic
AGCTGTTATAATGGATGAAA+AGG 0.418939 1:+7425277 None:intergenic
GAAGTCAGGATCTTTGATTA+GGG 0.432423 1:-7426512 None:intergenic
CAAGTTCAAATCATCAAATT+GGG 0.453217 1:+7425603 MsG0180000526.01.T01:CDS
ATCCTTGTTGCAACATATGA+TGG 0.459740 1:+7426298 MsG0180000526.01.T01:CDS
GCTAATGCTGCAGTGAAGTC+AGG 0.465446 1:-7426526 None:intergenic
ATGGTTTAAATGACTCATTA+GGG 0.465681 1:-7426339 None:intergenic
ATGGAGGAAGTATGGTCAAA+AGG 0.476669 1:+7425999 MsG0180000526.01.T01:CDS
TGCTGGGCAACTAGGAGCCA+TGG 0.478382 1:-7426064 None:intergenic
CCATCTTCATCCACACCTAA+AGG 0.490427 1:+7426358 MsG0180000526.01.T01:CDS
AATATATAGATAATAAAAGA+TGG 0.494453 1:+7425970 MsG0180000526.01.T01:intron
AGAGTTACAACAAGTGAAAG+AGG 0.509069 1:+7425481 MsG0180000526.01.T01:CDS
AGCTTACTTTAGGTGCTCCA+TGG 0.512350 1:+7426047 MsG0180000526.01.T01:CDS
GAGAATGTCATGCAACAGTT+TGG 0.514761 1:+7426451 MsG0180000526.01.T01:CDS
CTTATGTTCTTGATCAGTGA+CGG 0.524464 1:-7426566 None:intergenic
GTCATGCAACAGTTTGGCTA+TGG 0.529941 1:+7426457 MsG0180000526.01.T01:CDS
TAATAAAAGATGGCTATCAA+TGG 0.531094 1:+7425980 MsG0180000526.01.T01:CDS
CCTTTAGGTGTGGATGAAGA+TGG 0.531585 1:-7426358 None:intergenic
TCAACAAGGAAGGACACAAA+GGG 0.547154 1:+7425579 MsG0180000526.01.T01:CDS
GAGCACCTAAAGTAAGCTCT+AGG 0.566462 1:-7426042 None:intergenic
GTTCGTACAAAGACTTGTAG+TGG 0.571338 1:-7425686 None:intergenic
TGCAACAGTTTGGCTATGGA+AGG 0.583957 1:+7426461 MsG0180000526.01.T01:CDS
CTCCATCATATGTTGCAACA+AGG 0.587646 1:-7426300 None:intergenic
ATCAACAAGGAAGGACACAA+AGG 0.597349 1:+7425578 MsG0180000526.01.T01:CDS
CTTCAAGAGATCAACAAGGA+AGG 0.612726 1:+7425569 MsG0180000526.01.T01:CDS
TCTCGATTTGAATCTTTCGG+AGG 0.620338 1:+7426603 MsG0180000526.01.T01:CDS
TAAAAGATGGCTATCAATGG+AGG 0.624488 1:+7425983 MsG0180000526.01.T01:CDS
GATTGATGAACCTTTAGGTG+TGG 0.626271 1:-7426368 None:intergenic
ATGACTCATTAGGGACACCA+TGG 0.648715 1:-7426330 None:intergenic
TATGATGGAGAGCACAACCA+TGG 0.692151 1:+7426313 MsG0180000526.01.T01:CDS
CCATCTTCAAGAGATCAACA+AGG 0.701780 1:+7425565 MsG0180000526.01.T01:CDS
GATCAAGAACATAAGCGACA+AGG 0.725331 1:+7426574 MsG0180000526.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATAGATAATAAAAGA+TGG + Chr1:7425970-7425989 MsG0180000526.01.T01:intron 10.0%
!! AATTTCAGAAGAAATAAATT+TGG + Chr1:7425906-7425925 MsG0180000526.01.T01:intron 15.0%
!! ATTATTCTATGAAAATATTG+TGG + Chr1:7426208-7426227 MsG0180000526.01.T01:intron 15.0%
!! TAAAGTTAATAAATGAAGTA+AGG - Chr1:7426250-7426269 None:intergenic 15.0%
!! TATGTATATGATTTATAGAA+AGG + Chr1:7426153-7426172 MsG0180000526.01.T01:intron 15.0%
!! TTACTTCATTTATTAACTTT+AGG + Chr1:7426249-7426268 MsG0180000526.01.T01:intron 15.0%
!! GGTTTCTTATTATACTTAAT+AGG + Chr1:7425312-7425331 MsG0180000526.01.T01:intron 20.0%
!!! ATCTTCTAATTTTGCTTTTT+AGG + Chr1:7425380-7425399 MsG0180000526.01.T01:intron 20.0%
!!! TTAACAATTTTGATGTGTTA+AGG + Chr1:7425442-7425461 MsG0180000526.01.T01:intron 20.0%
! AAGGTTACAAGGTTATTATA+TGG + Chr1:7426172-7426191 MsG0180000526.01.T01:intron 25.0%
! ACAAGTTCAAATCATCAAAT+TGG + Chr1:7425602-7425621 MsG0180000526.01.T01:CDS 25.0%
! ATGAAAAGGTAACTAATTAG+TGG + Chr1:7425291-7425310 MsG0180000526.01.T01:intron 25.0%
! ATGGTTTAAATGACTCATTA+GGG - Chr1:7426342-7426361 None:intergenic 25.0%
! CAAGTTCAAATCATCAAATT+GGG + Chr1:7425603-7425622 MsG0180000526.01.T01:CDS 25.0%
! TAATAAAAGATGGCTATCAA+TGG + Chr1:7425980-7425999 MsG0180000526.01.T01:CDS 25.0%
! TACAAAAATGCATACATGAT+AGG + Chr1:7426272-7426291 MsG0180000526.01.T01:CDS 25.0%
! TGATTTATAGAAAGGTTACA+AGG + Chr1:7426161-7426180 MsG0180000526.01.T01:intron 25.0%
!! AAATCTCGATTTGAATCTTT+CGG + Chr1:7426600-7426619 MsG0180000526.01.T01:CDS 25.0%
!! AATGAGTGATATGATTTTAG+TGG - Chr1:7425810-7425829 None:intergenic 25.0%
!! TCTGAAATTTATGTCTAGAA+AGG - Chr1:7425895-7425914 None:intergenic 25.0%
CATACCAAACTTTCATCATT+AGG - Chr1:7425716-7425735 None:intergenic 30.0%
GATGGTTTAAATGACTCATT+AGG - Chr1:7426343-7426362 None:intergenic 30.0%
TCAACCTAATGATGAAAGTT+TGG + Chr1:7425709-7425728 MsG0180000526.01.T01:CDS 30.0%
TCTTTGTCATTCAATGTTGT+TGG - Chr1:7426409-7426428 None:intergenic 30.0%
TTAGAGATTGATGAACCTTT+AGG - Chr1:7426376-7426395 None:intergenic 30.0%
! CTTTTGCTTGAATCAATGTT+AGG - Chr1:7425635-7425654 None:intergenic 30.0%
!! ACAATTTTGATGTGTTAAGG+TGG + Chr1:7425445-7425464 MsG0180000526.01.T01:intron 30.0%
!!! CATATACCTTCTTTTTTGCT+GGG - Chr1:7426083-7426102 None:intergenic 30.0%
AGAGTTACAACAAGTGAAAG+AGG + Chr1:7425481-7425500 MsG0180000526.01.T01:CDS 35.0%
ATCCTTGTTGCAACATATGA+TGG + Chr1:7426298-7426317 MsG0180000526.01.T01:CDS 35.0%
CTCACAAAGTCTAGTATTTG+TGG - Chr1:7426434-7426453 None:intergenic 35.0%
CTTATGTTCTTGATCAGTGA+CGG - Chr1:7426569-7426588 None:intergenic 35.0%
CTTGTTGATCTCTTGAAGAT+GGG - Chr1:7425567-7425586 None:intergenic 35.0%
GAAGTCAGGATCTTTGATTA+GGG - Chr1:7426515-7426534 None:intergenic 35.0%
TAAAAGATGGCTATCAATGG+AGG + Chr1:7425983-7426002 MsG0180000526.01.T01:CDS 35.0%
TGAAGTCAGGATCTTTGATT+AGG - Chr1:7426516-7426535 None:intergenic 35.0%
!!! GCATATACCTTCTTTTTTGC+TGG - Chr1:7426084-7426103 None:intergenic 35.0%
ATCAACAAGGAAGGACACAA+AGG + Chr1:7425578-7425597 MsG0180000526.01.T01:CDS 40.0%
CCATCTTCAAGAGATCAACA+AGG + Chr1:7425565-7425584 MsG0180000526.01.T01:CDS 40.0%
CCTTGTTGATCTCTTGAAGA+TGG - Chr1:7425568-7425587 None:intergenic 40.0%
CTCCATCATATGTTGCAACA+AGG - Chr1:7426303-7426322 None:intergenic 40.0%
CTTCAAGAGATCAACAAGGA+AGG + Chr1:7425569-7425588 MsG0180000526.01.T01:CDS 40.0%
CTTCTCCTAGAGCTTACTTT+AGG + Chr1:7426037-7426056 MsG0180000526.01.T01:CDS 40.0%
GAGAATGTCATGCAACAGTT+TGG + Chr1:7426451-7426470 MsG0180000526.01.T01:CDS 40.0%
GATCAAGAACATAAGCGACA+AGG + Chr1:7426574-7426593 MsG0180000526.01.T01:CDS 40.0%
GATTGATGAACCTTTAGGTG+TGG - Chr1:7426371-7426390 None:intergenic 40.0%
GTTCGTACAAAGACTTGTAG+TGG - Chr1:7425689-7425708 None:intergenic 40.0%
TAGTTGCCCAGCAAAAAAGA+AGG + Chr1:7426074-7426093 MsG0180000526.01.T01:CDS 40.0%
TCAACAAGGAAGGACACAAA+GGG + Chr1:7425579-7425598 MsG0180000526.01.T01:CDS 40.0%
! ATGGAGGAAGTATGGTCAAA+AGG + Chr1:7425999-7426018 MsG0180000526.01.T01:CDS 40.0%
! TCTCGATTTGAATCTTTCGG+AGG + Chr1:7426603-7426622 MsG0180000526.01.T01:CDS 40.0%
!! TCTAGGAGAAGCATTGTCTT+TGG - Chr1:7426028-7426047 None:intergenic 40.0%
!!! TTCTTTTTTGCTGGGCAACT+AGG - Chr1:7426075-7426094 None:intergenic 40.0%
AGCTTACTTTAGGTGCTCCA+TGG + Chr1:7426047-7426066 MsG0180000526.01.T01:CDS 45.0%
ATGACTCATTAGGGACACCA+TGG - Chr1:7426333-7426352 None:intergenic 45.0%
CCATCTTCATCCACACCTAA+AGG + Chr1:7426358-7426377 MsG0180000526.01.T01:CDS 45.0%
CCTTTAGGTGTGGATGAAGA+TGG - Chr1:7426361-7426380 None:intergenic 45.0%
GAGCACCTAAAGTAAGCTCT+AGG - Chr1:7426045-7426064 None:intergenic 45.0%
GGCTATCAATGGAGGAAGTA+TGG + Chr1:7425991-7426010 MsG0180000526.01.T01:CDS 45.0%
GTCATGCAACAGTTTGGCTA+TGG + Chr1:7426457-7426476 MsG0180000526.01.T01:CDS 45.0%
TGCAACAGTTTGGCTATGGA+AGG + Chr1:7426461-7426480 MsG0180000526.01.T01:CDS 45.0%
! TATGATGGAGAGCACAACCA+TGG + Chr1:7426313-7426332 MsG0180000526.01.T01:CDS 45.0%
! TGTAGTGGCTTTTGTGCTGT+GGG - Chr1:7425674-7425693 None:intergenic 45.0%
! TTGTAGTGGCTTTTGTGCTG+TGG - Chr1:7425675-7425694 None:intergenic 45.0%
!! TTAAAAAAAAAATTAAAACA+TGG - Chr1:7425356-7425375 None:intergenic 5.0%
GCTAATGCTGCAGTGAAGTC+AGG - Chr1:7426529-7426548 None:intergenic 50.0%
TGCTGGGCAACTAGGAGCCA+TGG - Chr1:7426067-7426086 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 7425287 7426630 7425287 ID=MsG0180000526.01;Name=MsG0180000526.01
Chr1 mRNA 7425287 7426630 7425287 ID=MsG0180000526.01.T01;Parent=MsG0180000526.01;Name=MsG0180000526.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|4|0|251
Chr1 exon 7425287 7425298 7425287 ID=MsG0180000526.01.T01:exon:27711;Parent=MsG0180000526.01.T01
Chr1 exon 7425464 7425730 7425464 ID=MsG0180000526.01.T01:exon:27710;Parent=MsG0180000526.01.T01
Chr1 exon 7425979 7426095 7425979 ID=MsG0180000526.01.T01:exon:27709;Parent=MsG0180000526.01.T01
Chr1 exon 7426271 7426630 7426271 ID=MsG0180000526.01.T01:exon:27708;Parent=MsG0180000526.01.T01
Chr1 CDS 7425287 7425298 7425287 ID=MsG0180000526.01.T01:cds;Parent=MsG0180000526.01.T01
Chr1 CDS 7425464 7425730 7425464 ID=MsG0180000526.01.T01:cds;Parent=MsG0180000526.01.T01
Chr1 CDS 7425979 7426095 7425979 ID=MsG0180000526.01.T01:cds;Parent=MsG0180000526.01.T01
Chr1 CDS 7426271 7426630 7426271 ID=MsG0180000526.01.T01:cds;Parent=MsG0180000526.01.T01
Gene Sequence

>MsG0180000526.01.T01

ATGGATGAAAAGGTGGAAACTCTTGAATTAGAGTTACAACAAGTGAAAGAGGAAAACAATACTCTAAGATTCATGCTTGAAGTTATGAATATCAAGTGTACAAAGCTTGAGTCCCATCTTCAAGAGATCAACAAGGAAGGACACAAAGGGACAAGTTCAAATCATCAAATTGGGTCAATACCTAACATTGATTCAAGCAAAAGAGCAAGACTAGAGATTCCCACAGCACAAAAGCCACTACAAGTCTTTGTACGAACTCAACCTAATGATGAAAGTTTGATAATAAAAGATGGCTATCAATGGAGGAAGTATGGTCAAAAGGTTACCAAAGACAATGCTTCTCCTAGAGCTTACTTTAGGTGCTCCATGGCTCCTAGTTGCCCAGCAAAAAAGAAGGTACAAAAATGCATACATGATAGGTCTATCCTTGTTGCAACATATGATGGAGAGCACAACCATGGTGTCCCTAATGAGTCATTTAAACCATCTTCATCCACACCTAAAGGTTCATCAATCTCTAATAATAAATTACCAACAACATTGAATGACAAAGAAGCCACAAATACTAGACTTTGTGAGAATGTCATGCAACAGTTTGGCTATGGAAGGCACATTAAAATTGAAGAATATGCAAGTTCCCTAATCAAAGATCCTGACTTCACTGCAGCATTAGCTGAAGCAGTTGCTCGAACCGTCACTGATCAAGAACATAAGCGACAAGGTCTAAATCTCGATTTGAATCTTTCGGAGGAGTGA

Protein sequence

>MsG0180000526.01.T01

MDEKVETLELELQQVKEENNTLRFMLEVMNIKCTKLESHLQEINKEGHKGTSSNHQIGSIPNIDSSKRARLEIPTAQKPLQVFVRTQPNDESLIIKDGYQWRKYGQKVTKDNASPRAYFRCSMAPSCPAKKKVQKCIHDRSILVATYDGEHNHGVPNESFKPSSSTPKGSSISNNKLPTTLNDKEATNTRLCENVMQQFGYGRHIKIEEYASSLIKDPDFTAALAEAVARTVTDQEHKRQGLNLDLNLSEE*