AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001198.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001198.01.T01 MTR_1g032860 93.976 249 15 0 49 297 63 311 1.99e-166 464
MsG0180001198.01.T01 MTR_8g105910 65.587 247 83 2 49 293 63 309 1.75e-103 305
MsG0180001198.01.T01 MTR_8g066460 54.751 221 88 3 54 269 40 253 8.55e-73 225
MsG0180001198.01.T01 MTR_8g066460 54.751 221 88 3 54 269 56 269 1.16e-72 226
MsG0180001198.01.T01 MTR_5g029640 56.109 221 85 3 54 269 40 253 3.77e-72 229
MsG0180001198.01.T01 MTR_5g029640 54.545 154 63 1 116 269 279 425 1.02e-46 163
MsG0180001198.01.T01 MTR_7g086080 37.500 248 128 4 27 247 5 252 2.73e-47 159
MsG0180001198.01.T01 MTR_5g039130 33.990 203 110 3 54 236 44 242 1.37e-29 113
MsG0180001198.01.T01 MTR_7g010100 33.803 213 108 4 53 236 41 249 3.19e-26 104
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001198.01.T01 AT4G17720 55.172 232 90 3 50 274 36 260 2.16e-75 233
MsG0180001198.01.T01 AT5G46870 55.340 206 81 1 50 244 36 241 4.19e-70 219
MsG0180001198.01.T01 AT5G46870 55.340 206 81 1 50 244 36 241 4.19e-70 219
MsG0180001198.01.T01 AT1G67950 55.122 205 84 2 52 255 4 201 4.43e-70 216
MsG0180001198.01.T01 AT1G67950 54.854 206 84 2 52 255 63 261 1.02e-69 218
MsG0180001198.01.T01 AT1G67950 55.122 205 84 2 52 255 63 260 2.56e-69 216
MsG0180001198.01.T01 AT1G67950 55.122 205 84 2 52 255 64 261 3.11e-69 216
MsG0180001198.01.T01 AT5G16840 53.299 197 88 2 51 245 37 231 2.79e-61 195
MsG0180001198.01.T01 AT5G16840 54.497 189 82 2 59 245 42 228 2.72e-60 192
MsG0180001198.01.T01 AT5G16840 54.497 189 82 2 59 245 44 230 2.98e-60 192
MsG0180001198.01.T01 AT5G32450 41.121 214 106 3 50 243 37 250 1.92e-45 155
MsG0180001198.01.T01 AT1G14340 37.245 196 103 3 59 238 48 239 3.71e-30 114
MsG0180001198.01.T01 AT3G01210 32.124 193 96 5 59 224 47 231 2.16e-19 85.9
MsG0180001198.01.T01 AT3G01210 32.124 193 96 5 59 224 47 231 2.16e-19 85.9

Find 73 sgRNAs with CRISPR-Local

Find 381 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTGCTTATGTTACCTTTA+AGG 0.148013 1:+17227749 MsG0180001198.01.T01:CDS
GCTTCTATTGATAATAAAAT+TGG 0.199716 1:+17228891 MsG0180001198.01.T01:CDS
GATGAAAGGTATCAGCTTTC+TGG 0.202281 1:+17228972 MsG0180001198.01.T01:CDS
GGACTTGAGGGAAGTGCTTC+AGG 0.208060 1:-17227982 None:intergenic
TGCTCCCTGTGAATCCTTAA+AGG 0.229047 1:-17227763 None:intergenic
GCTCCACAGCTACACCAAAT+TGG 0.315541 1:+17226951 MsG0180001198.01.T01:CDS
TTAATATAGGGTTCTAAGAT+AGG 0.315670 1:+17227913 MsG0180001198.01.T01:intron
GAAACATGAACGGTCCAATT+TGG 0.324781 1:-17226965 None:intergenic
GAGGAAAAGGCAAGTATTGC+TGG 0.353992 1:+17229023 MsG0180001198.01.T01:CDS
CTTCAGCTCTTTGATCAGTA+TGG 0.405023 1:-17226919 None:intergenic
AACTTTGAGGACTCTTTAAA+CGG 0.410295 1:+17229236 MsG0180001198.01.T01:CDS
ATCATATATATAGAAATGTT+GGG 0.410502 1:+17223081 None:intergenic
ACGTCTTAACCGGAGCTTCA+TGG 0.420415 1:+17229069 MsG0180001198.01.T01:CDS
AGCAATTCTTACGTCTTAAC+CGG 0.425746 1:+17229059 MsG0180001198.01.T01:CDS
GACTTGAGGGAAGTGCTTCA+GGG 0.436600 1:-17227981 None:intergenic
CAATTGAAGACGTTCATCAA+TGG 0.442418 1:-17228844 None:intergenic
CACAGCTGGATTGACCTTGT+TGG 0.443545 1:+17229355 MsG0180001198.01.T01:three_prime_UTR
TTAAGTGATAAACTAAGTAT+TGG 0.445760 1:+17228915 MsG0180001198.01.T01:CDS
TTGGTACTTACTGGACTTGA+GGG 0.448945 1:-17227994 None:intergenic
ATTTGGTGTAGCTGTGGAGC+AGG 0.451544 1:-17226948 None:intergenic
ATCATTTACAGTGAAAGAAA+AGG 0.453579 1:+17229188 MsG0180001198.01.T01:CDS
GGGGATGCCATGGCACCTGG+GGG 0.467905 1:+17223102 MsG0180001198.01.T01:CDS
AACATCCTTAAAAGCACAGC+TGG 0.474196 1:+17229341 MsG0180001198.01.T01:three_prime_UTR
TGTTACCTTTAAGGATTCAC+AGG 0.482190 1:+17227758 MsG0180001198.01.T01:CDS
ATATGCTCAGATGAACTTTG+AGG 0.486324 1:+17229223 MsG0180001198.01.T01:CDS
TCCGAAAATGACAGTAAAGT+TGG 0.488241 1:+17229284 MsG0180001198.01.T01:CDS
AACAACCATTGTCAATGAAA+AGG 0.489656 1:+17228938 MsG0180001198.01.T01:CDS
TATTGCTGTTGCTGAGGAAA+AGG 0.490313 1:+17229010 MsG0180001198.01.T01:CDS
TCTTAACTGCATCAGCACTT+TGG 0.494465 1:-17228746 None:intergenic
GGAAGTTGGTACTGCTCCAC+AGG 0.510179 1:-17227958 None:intergenic
AGAGACAGCAGTTCTCTTGA+CGG 0.514584 1:+17227785 MsG0180001198.01.T01:CDS
AATAAGTACCATGCTCGCTA+AGG 0.523837 1:+17228782 MsG0180001198.01.T01:CDS
AGCTTGTTCAACCTTCTCCA+TGG 0.525835 1:-17229147 None:intergenic
GATTTGTTATAGCGATGTAA+AGG 0.528195 1:+17229435 MsG0180001198.01.T01:three_prime_UTR
ACCACATATTAACGGCAACC+AGG 0.535376 1:-17223143 None:intergenic
TGTTTATGAATCATATCTGT+AGG 0.535572 1:-17229463 None:intergenic
ATTCGACAGCCATGAAGCTC+CGG 0.539440 1:-17229078 None:intergenic
AAGTGCTGATGCAGTTAAGA+AGG 0.541174 1:+17228749 MsG0180001198.01.T01:CDS
TGTGTTTAGCGTTGTTGCAA+AGG 0.541874 1:+17229100 MsG0180001198.01.T01:CDS
CCCTGGTTGCCGTTAATATG+TGG 0.542886 1:+17223142 MsG0180001198.01.T01:CDS
AATGAAACCCTTAGCGAGCA+TGG 0.544910 1:-17228790 None:intergenic
GAACTAACAGGAACTACTGC+AGG 0.546257 1:-17229263 None:intergenic
TCATTTACAGTGAAAGAAAA+GGG 0.547122 1:+17229189 MsG0180001198.01.T01:CDS
TTTGGTACTTACTGGACTTG+AGG 0.548422 1:-17227995 None:intergenic
CGTTGTTGCAAAGGCAGCTG+AGG 0.550072 1:+17229109 MsG0180001198.01.T01:CDS
GTATCGCTACCACATATTAA+CGG 0.551621 1:-17223151 None:intergenic
TCATATATATAGAAATGTTG+GGG 0.559275 1:+17223082 None:intergenic
TGTAGCTGTGGAGCAGGGAA+TGG 0.560070 1:-17226942 None:intergenic
ACTTGAGGGAAGTGCTTCAG+GGG 0.569844 1:-17227980 None:intergenic
ATCTGCTATTGCTGTTGCTG+AGG 0.579383 1:+17229004 MsG0180001198.01.T01:CDS
AGGTGAAAGAGATGGATGAA+AGG 0.582201 1:+17228958 MsG0180001198.01.T01:CDS
ATAAGTACCATGCTCGCTAA+GGG 0.587078 1:+17228783 MsG0180001198.01.T01:CDS
GAAGGTTGAACAAGCTGAGG+TGG 0.587721 1:+17229154 MsG0180001198.01.T01:CDS
CAGCACGATGACCATGGAGA+AGG 0.588901 1:+17229136 MsG0180001198.01.T01:CDS
GGATGTCAGCACGATGACCA+TGG 0.589946 1:+17229130 MsG0180001198.01.T01:CDS
CAATGAAAAGGTGAAAGAGA+TGG 0.594437 1:+17228950 MsG0180001198.01.T01:CDS
TCTCAACAGAGATCCGCCCC+TGG 0.599660 1:+17223125 MsG0180001198.01.T01:CDS
CAGGTGAGATGGTGACATAT+AGG 0.608640 1:-17227939 None:intergenic
TTACAGTGAAAGAAAAGGGA+CGG 0.611190 1:+17229193 MsG0180001198.01.T01:CDS
CCACATATTAACGGCAACCA+GGG 0.613374 1:-17223142 None:intergenic
GTACTGCTCCACAGGTGAGA+TGG 0.613387 1:-17227950 None:intergenic
ATATTAACGGCAACCAGGGG+CGG 0.616036 1:-17223138 None:intergenic
GGTCCAATTTGGTGTAGCTG+TGG 0.621466 1:-17226954 None:intergenic
GGAGAAGGTTGAACAAGCTG+AGG 0.639161 1:+17229151 MsG0180001198.01.T01:CDS
GTTACCTTTAAGGATTCACA+GGG 0.642161 1:+17227759 MsG0180001198.01.T01:CDS
ACTCACATCTGAAACATGAA+CGG 0.644889 1:-17226975 None:intergenic
TTTGGTGTAGCTGTGGAGCA+GGG 0.645204 1:-17226947 None:intergenic
ATATGTCACCATCTCACCTG+TGG 0.654688 1:+17227942 MsG0180001198.01.T01:CDS
CTTGAGGGAAGTGCTTCAGG+GGG 0.674891 1:-17227979 None:intergenic
TGAAAATAACTATTCCAACA+AGG 0.690195 1:-17229369 None:intergenic
CACATATTAACGGCAACCAG+GGG 0.700318 1:-17223141 None:intergenic
CATATATATAGAAATGTTGG+GGG 0.701315 1:+17223083 None:intergenic
TTTGAGGACTCTTTAAACGG+CGG 0.709075 1:+17229239 MsG0180001198.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATAGATTCATATTATAA+AGG + Chr1:17227276-17227295 MsG0180001198.01.T01:intron 10.0%
!! AAAAAAAAAAAAAACCACTT+TGG + Chr1:17224443-17224462 MsG0180001198.01.T01:intron 15.0%
!! AAATTCAATTAATAACTAGA+TGG + Chr1:17228498-17228517 MsG0180001198.01.T01:intron 15.0%
!! AATATGATAGTCTAATATAA+TGG + Chr1:17224389-17224408 MsG0180001198.01.T01:intron 15.0%
!! AGAATCTTTATTAATTAAGA+GGG - Chr1:17227254-17227273 None:intergenic 15.0%
!! ATATGATAGTCTAATATAAT+GGG + Chr1:17224390-17224409 MsG0180001198.01.T01:intron 15.0%
!! TAATAGATTACAATTAGTTA+GGG + Chr1:17227140-17227159 MsG0180001198.01.T01:intron 15.0%
!! TAGAATCTTTATTAATTAAG+AGG - Chr1:17227255-17227274 None:intergenic 15.0%
!! TCATTTCTCTATATTATAAT+AGG - Chr1:17223990-17224009 None:intergenic 15.0%
!! TTGTCAAAAAAATTTCAATT+TGG - Chr1:17225081-17225100 None:intergenic 15.0%
!!! AAAATTTTACAAAGAAAATG+AGG - Chr1:17224117-17224136 None:intergenic 15.0%
!!! AAGTTTGATTTTTATTCAAT+AGG + Chr1:17226496-17226515 MsG0180001198.01.T01:intron 15.0%
!!! AATATGACATTTTTTTGAAA+AGG + Chr1:17223567-17223586 MsG0180001198.01.T01:intron 15.0%
!!! ATATATATTTTGTGTTGAAT+AGG + Chr1:17225695-17225714 MsG0180001198.01.T01:intron 15.0%
!!! ATTCTTCGATTTTTAATATA+GGG + Chr1:17227901-17227920 MsG0180001198.01.T01:intron 15.0%
!!! GTCATTTTCTAATTTTTATT+TGG - Chr1:17225325-17225344 None:intergenic 15.0%
!!! TATTCTTCGATTTTTAATAT+AGG + Chr1:17227900-17227919 MsG0180001198.01.T01:intron 15.0%
!!! TTTTTAGTAAACTACTAAAT+TGG - Chr1:17225172-17225191 None:intergenic 15.0%
!! AAATATGTAAATGTAGATTG+AGG - Chr1:17224303-17224322 None:intergenic 20.0%
!! AAATCATGAAGTATATCTAT+TGG + Chr1:17226775-17226794 MsG0180001198.01.T01:intron 20.0%
!! AAATCCAAAATCATTTGATT+TGG + Chr1:17227212-17227231 MsG0180001198.01.T01:intron 20.0%
!! AACTAATTGTAATCTATTAC+TGG - Chr1:17227139-17227158 None:intergenic 20.0%
!! ATCGCTTAATATTACAAAAA+AGG + Chr1:17223325-17223344 MsG0180001198.01.T01:intron 20.0%
!! ATTAAAATGAAAGTTACCAA+AGG + Chr1:17224637-17224656 MsG0180001198.01.T01:intron 20.0%
!! CACAAAAATTCTCAAAAAAT+AGG - Chr1:17224023-17224042 None:intergenic 20.0%
!! GTAATAGATTACAATTAGTT+AGG + Chr1:17227139-17227158 MsG0180001198.01.T01:intron 20.0%
!! GTGTTAGATAATAAAATATC+AGG - Chr1:17223436-17223455 None:intergenic 20.0%
!! TGATAAATATCAATGTGATA+GGG - Chr1:17224877-17224896 None:intergenic 20.0%
!! TTAAGTGATAAACTAAGTAT+TGG + Chr1:17228915-17228934 MsG0180001198.01.T01:CDS 20.0%
!! TTGATAAATATCAATGTGAT+AGG - Chr1:17224878-17224897 None:intergenic 20.0%
!!! AAACTCTATCTTTTTTCATA+TGG + Chr1:17223701-17223720 MsG0180001198.01.T01:intron 20.0%
!!! AGACTATCATATTTTTTTCT+CGG - Chr1:17224382-17224401 None:intergenic 20.0%
!!! ATCAACTTTTACAAACAAAT+AGG + Chr1:17224835-17224854 MsG0180001198.01.T01:intron 20.0%
!!! ATGAATTTTTTTGGATCTAA+TGG + Chr1:17225841-17225860 MsG0180001198.01.T01:intron 20.0%
!!! ATGATATTTTGTGAGTAAAT+AGG - Chr1:17226853-17226872 None:intergenic 20.0%
!!! ATGATTTGCATTTTTTTCAT+CGG + Chr1:17225944-17225963 MsG0180001198.01.T01:intron 20.0%
!!! ATTGGATTTTCATAACATTT+TGG + Chr1:17226749-17226768 MsG0180001198.01.T01:intron 20.0%
!!! CTCTATTATAAATAACTTGT+CGG - Chr1:17224344-17224363 None:intergenic 20.0%
!!! GCTTCTATTGATAATAAAAT+TGG + Chr1:17228891-17228910 MsG0180001198.01.T01:CDS 20.0%
!!! GGTTGTTAAGTAATTTTAAA+GGG - Chr1:17225392-17225411 None:intergenic 20.0%
!!! TACACAAAAATGTTTTACAT+GGG - Chr1:17228478-17228497 None:intergenic 20.0%
!!! TATGAGCTTTTATTTTTGAT+TGG + Chr1:17226731-17226750 MsG0180001198.01.T01:intron 20.0%
!!! TATTTCAGATTTGTTTTGTT+CGG + Chr1:17227322-17227341 MsG0180001198.01.T01:intron 20.0%
!!! TTACACAAAAATGTTTTACA+TGG - Chr1:17228479-17228498 None:intergenic 20.0%
!!! TTTTCAAAAGCAATACTTAT+TGG - Chr1:17225812-17225831 None:intergenic 20.0%
!!! TTTTTGCTGATGAATTTTTT+TGG + Chr1:17225832-17225851 MsG0180001198.01.T01:intron 20.0%
!!! TTTTTTTTAGATAGTAGCAT+TGG + Chr1:17227001-17227020 MsG0180001198.01.T01:intron 20.0%
! AACCATTCATTAAATTTACC+CGG - Chr1:17225984-17226003 None:intergenic 25.0%
! AATAGAATAACCCATCAAAT+TGG + Chr1:17224928-17224947 MsG0180001198.01.T01:intron 25.0%
! ACATGACTTAAAAATTGATG+TGG - Chr1:17227877-17227896 None:intergenic 25.0%
! ATATTATGTCCTTAATGACT+AGG - Chr1:17223674-17223693 None:intergenic 25.0%
! ATCATTTACAGTGAAAGAAA+AGG + Chr1:17229188-17229207 MsG0180001198.01.T01:CDS 25.0%
! ATTCATTGTATCGAAAATGT+CGG + Chr1:17225463-17225482 MsG0180001198.01.T01:intron 25.0%
! CTATTAATATGATAGAGTTC+CGG - Chr1:17226625-17226644 None:intergenic 25.0%
! CTGATATCAAATAAAGTACA+CGG + Chr1:17225213-17225232 MsG0180001198.01.T01:intron 25.0%
! CTTTGATCAACATAGTAATA+TGG + Chr1:17223188-17223207 MsG0180001198.01.T01:intron 25.0%
! GCACACAAAATGTTAAATTA+AGG - Chr1:17226886-17226905 None:intergenic 25.0%
! TAATGTCACAAAATCTCATA+TGG + Chr1:17228402-17228421 MsG0180001198.01.T01:intron 25.0%
! TAATTGTAATATACCTGATC+AGG + Chr1:17227033-17227052 MsG0180001198.01.T01:intron 25.0%
! TCATTTACAGTGAAAGAAAA+GGG + Chr1:17229189-17229208 MsG0180001198.01.T01:CDS 25.0%
! TGAAAATAACTATTCCAACA+AGG - Chr1:17229372-17229391 None:intergenic 25.0%
! TGAACAATTGGAATTTGATA+GGG - Chr1:17225414-17225433 None:intergenic 25.0%
! TGTTTATGAATCATATCTGT+AGG - Chr1:17229466-17229485 None:intergenic 25.0%
! TTATCTGTACGAAATGAAAA+TGG - Chr1:17227512-17227531 None:intergenic 25.0%
! TTATTTAGTGTATGCAATTG+AGG + Chr1:17228039-17228058 MsG0180001198.01.T01:intron 25.0%
! TTCAATATATTGAGATGCAA+AGG + Chr1:17227610-17227629 MsG0180001198.01.T01:intron 25.0%
! TTCGTATTTGTATTGTTAAC+AGG - Chr1:17223252-17223271 None:intergenic 25.0%
! TTGAACAATTGGAATTTGAT+AGG - Chr1:17225415-17225434 None:intergenic 25.0%
! TTGCATACACTAAATAACAT+AGG - Chr1:17228036-17228055 None:intergenic 25.0%
! TTTCTTCTTTGTTAAGTCTT+AGG + Chr1:17225256-17225275 MsG0180001198.01.T01:intron 25.0%
!! AAGTGCATTTTATAGGAAAA+AGG + Chr1:17226055-17226074 MsG0180001198.01.T01:intron 25.0%
!! AATGATCAAAGAAGTATAAG+TGG - Chr1:17223742-17223761 None:intergenic 25.0%
!! AATTAGTTAGGGTGTTAAAA+TGG + Chr1:17227151-17227170 MsG0180001198.01.T01:intron 25.0%
!! AGTGCATTTTATAGGAAAAA+GGG + Chr1:17226056-17226075 MsG0180001198.01.T01:intron 25.0%
!! ATTAGTTAGGGTGTTAAAAT+GGG + Chr1:17227152-17227171 MsG0180001198.01.T01:intron 25.0%
!! CATCAGAAATATCTGAAATA+TGG - Chr1:17227473-17227492 None:intergenic 25.0%
!! GGGTTGTTAAGTAATTTTAA+AGG - Chr1:17225393-17225412 None:intergenic 25.0%
!! GTGTTAATTTAGAGTTCATT+AGG - Chr1:17223379-17223398 None:intergenic 25.0%
!! GTTTCCAAATCAAATGATTT+TGG - Chr1:17227219-17227238 None:intergenic 25.0%
!! TAATTTAACATTTTGTGTGC+AGG + Chr1:17226886-17226905 MsG0180001198.01.T01:intron 25.0%
!! TGAAGAATTCTTTTCATTCT+CGG + Chr1:17227581-17227600 MsG0180001198.01.T01:intron 25.0%
!! TTTTCAAACTATGCTATTGT+TGG - Chr1:17226425-17226444 None:intergenic 25.0%
!!! AATTTTTTTGTCACAACGAA+AGG - Chr1:17225446-17225465 None:intergenic 25.0%
!!! TACTAAGTGTTTTTGAATAC+TGG + Chr1:17226175-17226194 MsG0180001198.01.T01:intron 25.0%
!!! TGATTTGCATTTTTTTCATC+GGG + Chr1:17225945-17225964 MsG0180001198.01.T01:intron 25.0%
!!! TGTTAAATTAAGGTATTGCT+TGG - Chr1:17226876-17226895 None:intergenic 25.0%
!!! TTAATATAGGGTTCTAAGAT+AGG + Chr1:17227913-17227932 MsG0180001198.01.T01:intron 25.0%
AAAGACATAGACCAATTTGA+TGG - Chr1:17224942-17224961 None:intergenic 30.0%
AACAACCATTGTCAATGAAA+AGG + Chr1:17228938-17228957 MsG0180001198.01.T01:CDS 30.0%
AAGACATAGACCAATTTGAT+GGG - Chr1:17224941-17224960 None:intergenic 30.0%
AAGTAGGATCTGTATTACTT+TGG - Chr1:17223229-17223248 None:intergenic 30.0%
AATTCTTGTTCCATCATAGT+GGG - Chr1:17225625-17225644 None:intergenic 30.0%
ACGTTATATGCGATGTTATT+GGG + Chr1:17223935-17223954 MsG0180001198.01.T01:intron 30.0%
ACTGTGCATTTCATAGTAAT+GGG + Chr1:17227846-17227865 MsG0180001198.01.T01:intron 30.0%
AGTTGCTTATGTTACCTTTA+AGG + Chr1:17227749-17227768 MsG0180001198.01.T01:CDS 30.0%
ATATGAAGTATGAGATGCAA+AGG - Chr1:17226540-17226559 None:intergenic 30.0%
ATCCGGGTAAATTTAATGAA+TGG + Chr1:17225979-17225998 MsG0180001198.01.T01:intron 30.0%
CAAATTAACTTTAGTGTCCT+AGG + Chr1:17228431-17228450 MsG0180001198.01.T01:intron 30.0%
CGCATATAACGTATTACAAA+AGG - Chr1:17223927-17223946 None:intergenic 30.0%
CTAGGACACTAAAGTTAATT+TGG - Chr1:17228433-17228452 None:intergenic 30.0%
CTAGTTTATTAATCCTGTTG+TGG - Chr1:17223967-17223986 None:intergenic 30.0%
CTTGATATAACCTTTCATCT+TGG + Chr1:17226656-17226675 MsG0180001198.01.T01:intron 30.0%
GAACAATTGGAATTTGATAG+GGG - Chr1:17225413-17225432 None:intergenic 30.0%
GATCGAAGGAAATAATTAGA+TGG - Chr1:17224818-17224837 None:intergenic 30.0%
GCAAATAATGCAAACATGTT+CGG - Chr1:17228135-17228154 None:intergenic 30.0%
GCACAGTAAAATTTCAAATG+CGG - Chr1:17227833-17227852 None:intergenic 30.0%
GTTACTAATAAAGTGACCTT+TGG - Chr1:17224656-17224675 None:intergenic 30.0%
TACAACTAAAATACCAACAC+AGG - Chr1:17227429-17227448 None:intergenic 30.0%
TACGTTATATGCGATGTTAT+TGG + Chr1:17223934-17223953 MsG0180001198.01.T01:intron 30.0%
TACTGTGCATTTCATAGTAA+TGG + Chr1:17227845-17227864 MsG0180001198.01.T01:intron 30.0%
TAGAGTAGGGTTATGTTATT+GGG - Chr1:17223403-17223422 None:intergenic 30.0%
TATGTCAGAAAACAAACCAA+AGG - Chr1:17226699-17226718 None:intergenic 30.0%
TCATATCACATAAAAGCTTG+AGG - Chr1:17225902-17225921 None:intergenic 30.0%
TGTGGTTAATATCTTTGTCT+GGG + Chr1:17228290-17228309 MsG0180001198.01.T01:intron 30.0%
TTAGAAATGACCATTAACAG+CGG + Chr1:17224566-17224585 MsG0180001198.01.T01:intron 30.0%
TTAGAGTAGGGTTATGTTAT+TGG - Chr1:17223404-17223423 None:intergenic 30.0%
TTGCAGTCAAATTTATAGTG+TGG + Chr1:17228272-17228291 MsG0180001198.01.T01:intron 30.0%
TTGGAAAGAACCAATTCAAA+TGG - Chr1:17226602-17226621 None:intergenic 30.0%
TTGTATTGTTAACAGGAAGT+AGG - Chr1:17223245-17223264 None:intergenic 30.0%
! AAATTTTCCCTTCACTTTGT+TGG + Chr1:17228646-17228665 MsG0180001198.01.T01:intron 30.0%
! AACACTGATTGGAAAATTGA+GGG + Chr1:17226461-17226480 MsG0180001198.01.T01:intron 30.0%
! AACATTCATTTTCAAAGCAC+CGG - Chr1:17223488-17223507 None:intergenic 30.0%
! AACTTTGAGGACTCTTTAAA+CGG + Chr1:17229236-17229255 MsG0180001198.01.T01:CDS 30.0%
! ATGGTTTAAAACCTGAAACT+AGG - Chr1:17228240-17228259 None:intergenic 30.0%
! GAAGAATTCTTTTCATTCTC+GGG + Chr1:17227582-17227601 MsG0180001198.01.T01:intron 30.0%
! GACAACGAAACTGATATTTT+TGG - Chr1:17228157-17228176 None:intergenic 30.0%
! GATTTTGTGACATTATCTTC+AGG - Chr1:17228397-17228416 None:intergenic 30.0%
! GGATTTTCATAACATTTTGG+TGG + Chr1:17226752-17226771 MsG0180001198.01.T01:intron 30.0%
! GTGAAGGGAAAATTTTATAC+AGG - Chr1:17228641-17228660 None:intergenic 30.0%
! TCAAAGAAGTATAAGTGGTA+TGG - Chr1:17223737-17223756 None:intergenic 30.0%
! TCCAACATTTTATCCATTCA+CGG - Chr1:17226275-17226294 None:intergenic 30.0%
! TGTTTGTAAAAGTTGATCGA+AGG - Chr1:17224832-17224851 None:intergenic 30.0%
! TTTCACCTTTTCATTGACAA+TGG - Chr1:17228946-17228965 None:intergenic 30.0%
!! AGGTGAGTATTTTGAACAAT+TGG - Chr1:17225426-17225445 None:intergenic 30.0%
!! ATCGGGTATATTTTGTTATC+CGG + Chr1:17225962-17225981 MsG0180001198.01.T01:intron 30.0%
!! ATTGCAGTTTTGTCAAATAG+AGG + Chr1:17226096-17226115 MsG0180001198.01.T01:intron 30.0%
!! GATTTGTTATAGCGATGTAA+AGG + Chr1:17229435-17229454 MsG0180001198.01.T01:three_prime_UTR 30.0%
!! GCTATAATCTTGGTTACTTT+TGG + Chr1:17227365-17227384 MsG0180001198.01.T01:intron 30.0%
!! GCTTTGAAAATGAATGTTGA+TGG + Chr1:17223490-17223509 MsG0180001198.01.T01:intron 30.0%
!! TAAGGGTTTCATTTTAGGAA+AGG + Chr1:17228800-17228819 MsG0180001198.01.T01:CDS 30.0%
!! TTATTGACTATTGGTTCCTT+TGG + Chr1:17226680-17226699 MsG0180001198.01.T01:intron 30.0%
!!! ACCAACTTTACTGTCATTTT+CGG - Chr1:17229288-17229307 None:intergenic 30.0%
!!! GTTTCAGGTTTTAAACCATA+TGG + Chr1:17228241-17228260 MsG0180001198.01.T01:intron 30.0%
!!! TTTTTTCATATGGTCGTGAA+AGG + Chr1:17223711-17223730 MsG0180001198.01.T01:intron 30.0%
AAACCCAACAACTATGCTAA+AGG - Chr1:17226219-17226238 None:intergenic 35.0%
AACCCAACAACTATGCTAAA+GGG - Chr1:17226218-17226237 None:intergenic 35.0%
AACTACTACAGCTAACTTTG+TGG - Chr1:17223599-17223618 None:intergenic 35.0%
AAGAATCAAGAAACCCATGA+AGG - Chr1:17225561-17225580 None:intergenic 35.0%
AAGGATTAAACTACTAACGG+AGG - Chr1:17224543-17224562 None:intergenic 35.0%
AAGTCTCTATCAGATCTATC+TGG - Chr1:17228578-17228597 None:intergenic 35.0%
AATAACAAAGACAGCGGTTA+GGG + Chr1:17223286-17223305 MsG0180001198.01.T01:intron 35.0%
AATTCGCAAGCCATTTGAAT+TGG + Chr1:17226589-17226608 MsG0180001198.01.T01:intron 35.0%
ACGATTTCCAACAAAGTGAA+GGG - Chr1:17228656-17228675 None:intergenic 35.0%
ACTGCAATAGTTTAGCCATA+TGG - Chr1:17228259-17228278 None:intergenic 35.0%
AGAGTGAATAACAAAGACAG+CGG + Chr1:17223280-17223299 MsG0180001198.01.T01:intron 35.0%
AGCAATTCTTACGTCTTAAC+CGG + Chr1:17229059-17229078 MsG0180001198.01.T01:CDS 35.0%
AGGATAAAGTAGCAGCAATT+TGG - Chr1:17228016-17228035 None:intergenic 35.0%
AGTCAATAAGCCAAGATGAA+AGG - Chr1:17226669-17226688 None:intergenic 35.0%
ATAAAGGAACCGAAGATGAT+CGG + Chr1:17227292-17227311 MsG0180001198.01.T01:intron 35.0%
ATATGCTCAGATGAACTTTG+AGG + Chr1:17229223-17229242 MsG0180001198.01.T01:CDS 35.0%
CAATGAAAAGGTGAAAGAGA+TGG + Chr1:17228950-17228969 MsG0180001198.01.T01:CDS 35.0%
CAATTCTTGTTCCATCATAG+TGG - Chr1:17225626-17225645 None:intergenic 35.0%
CAATTGAAGACGTTCATCAA+TGG - Chr1:17228847-17228866 None:intergenic 35.0%
CGCAAGGATTAAACTACTAA+CGG - Chr1:17224546-17224565 None:intergenic 35.0%
CGTTATATGCGATGTTATTG+GGG + Chr1:17223936-17223955 MsG0180001198.01.T01:intron 35.0%
CTCACTTAACGACATAGAAA+TGG - Chr1:17228093-17228112 None:intergenic 35.0%
CTGATCAGGAATCAATGTTA+GGG + Chr1:17227047-17227066 MsG0180001198.01.T01:intron 35.0%
GCAAACAAAGTAACGAACAA+TGG - Chr1:17226831-17226850 None:intergenic 35.0%
GTAATATGGATCGTACTCTT+TGG + Chr1:17223202-17223221 MsG0180001198.01.T01:intron 35.0%
GTATCGCTACCACATATTAA+CGG - Chr1:17223154-17223173 None:intergenic 35.0%
GTGTGGTTAATATCTTTGTC+TGG + Chr1:17228289-17228308 MsG0180001198.01.T01:intron 35.0%
TAATATGATAGAGTTCCGGT+TGG - Chr1:17226621-17226640 None:intergenic 35.0%
TAATGGTCATTTCTAACGCA+AGG - Chr1:17224562-17224581 None:intergenic 35.0%
TACGATTTCCAACAAAGTGA+AGG - Chr1:17228657-17228676 None:intergenic 35.0%
TAGGAGATTTCGAACTGTAA+TGG + Chr1:17225714-17225733 MsG0180001198.01.T01:intron 35.0%
TCCGAAAATGACAGTAAAGT+TGG + Chr1:17229284-17229303 MsG0180001198.01.T01:CDS 35.0%
TCTGCAGAATTACAACCAAA+GGG - Chr1:17227712-17227731 None:intergenic 35.0%
TGATTATGTTCCTGCGTATT+TGG + Chr1:17223899-17223918 MsG0180001198.01.T01:intron 35.0%
TGGTTTCGACCAAAACATAT+GGG - Chr1:17223461-17223480 None:intergenic 35.0%
TTACAGTGAAAGAAAAGGGA+CGG + Chr1:17229193-17229212 MsG0180001198.01.T01:CDS 35.0%
TTATCCTAAATGTCACCCTT+TGG + Chr1:17227694-17227713 MsG0180001198.01.T01:intron 35.0%
TTGAAGAAAAGAGACCAAAG+TGG - Chr1:17224423-17224442 None:intergenic 35.0%
! AAGGAAGAATGATTTGGCAT+AGG + Chr1:17224613-17224632 MsG0180001198.01.T01:intron 35.0%
! ACTCACATCTGAAACATGAA+CGG - Chr1:17226978-17226997 None:intergenic 35.0%
! AGGAAGAATGATTTGGCATA+GGG + Chr1:17224614-17224633 MsG0180001198.01.T01:intron 35.0%
! AGGTCTGTTAGTTTAGAGTA+GGG - Chr1:17223416-17223435 None:intergenic 35.0%
! CAACACTGATTGGAAAATTG+AGG + Chr1:17226460-17226479 MsG0180001198.01.T01:intron 35.0%
! CATCTTGGCTTATTGACTAT+TGG + Chr1:17226671-17226690 MsG0180001198.01.T01:intron 35.0%
! CCAACATTTTATCCATTCAC+GGG - Chr1:17226274-17226293 None:intergenic 35.0%
! CTAACACTTCCCATATGTTT+TGG + Chr1:17223449-17223468 MsG0180001198.01.T01:intron 35.0%
! GCTCATCAAGTGCATTTTAT+AGG + Chr1:17226048-17226067 MsG0180001198.01.T01:intron 35.0%
! GTTACCTTTAAGGATTCACA+GGG + Chr1:17227759-17227778 MsG0180001198.01.T01:CDS 35.0%
! TAATGGGTAAACAACCACTT+TGG + Chr1:17224406-17224425 MsG0180001198.01.T01:intron 35.0%
! TAGTCTTTTCCGATCATCTT+CGG - Chr1:17227304-17227323 None:intergenic 35.0%
! TCAATGTTAGGGTTTTCAGA+AGG + Chr1:17227058-17227077 MsG0180001198.01.T01:intron 35.0%
! TGTTACCTTTAAGGATTCAC+AGG + Chr1:17227758-17227777 MsG0180001198.01.T01:CDS 35.0%
! TTGAATTGGTTCTTTCCAAC+CGG + Chr1:17226603-17226622 MsG0180001198.01.T01:intron 35.0%
! TTTTTGAATACTGGCCATTG+TGG + Chr1:17226184-17226203 MsG0180001198.01.T01:intron 35.0%
!! AATGGACTAGCATAAGACAA+TGG - Chr1:17228075-17228094 None:intergenic 35.0%
!! ACATTCATTTTCAAAGCACC+GGG - Chr1:17223487-17223506 None:intergenic 35.0%
!! ATGAATGGGTTTTGCTTTGA+AGG - Chr1:17224699-17224718 None:intergenic 35.0%
!! CTGTGCTTTTAAGGATGTTA+AGG - Chr1:17229340-17229359 None:intergenic 35.0%
!! GATCAAAGATGAGAGCATTT+CGG - Chr1:17223176-17223195 None:intergenic 35.0%
!! GGCTGATTTTGCTATAATCT+TGG + Chr1:17227355-17227374 MsG0180001198.01.T01:intron 35.0%
!! GTTTTGTTCGGAAGATAAGT+TGG + Chr1:17227334-17227353 MsG0180001198.01.T01:intron 35.0%
!! TCGGGTATATTTTGTTATCC+GGG + Chr1:17225963-17225982 MsG0180001198.01.T01:intron 35.0%
!! TCTATTGGTTTCTGATGAAC+TGG + Chr1:17226790-17226809 MsG0180001198.01.T01:intron 35.0%
!! TGAATGGGTTTTGCTTTGAA+GGG - Chr1:17224698-17224717 None:intergenic 35.0%
!! TTGCTTTGAAGGGAAAATGT+GGG - Chr1:17224688-17224707 None:intergenic 35.0%
!! TTTGCTTTGAAGGGAAAATG+TGG - Chr1:17224689-17224708 None:intergenic 35.0%
AAAACCCATTCATCTTCTGC+CGG + Chr1:17224706-17224725 MsG0180001198.01.T01:intron 40.0%
AAATACCAACACAGGACACT+AGG - Chr1:17227421-17227440 None:intergenic 40.0%
AACCCATGAAGGATCTGAAA+CGG - Chr1:17225550-17225569 None:intergenic 40.0%
AAGACGAATACCGTTGTGAA+GGG - Chr1:17223643-17223662 None:intergenic 40.0%
AATAAGTACCATGCTCGCTA+AGG + Chr1:17228782-17228801 MsG0180001198.01.T01:CDS 40.0%
AATACCAACACAGGACACTA+GGG - Chr1:17227420-17227439 None:intergenic 40.0%
ACAAAAGGTTCCAAATACGC+AGG - Chr1:17223912-17223931 None:intergenic 40.0%
ACAACCAAAGGGTGACATTT+AGG - Chr1:17227701-17227720 None:intergenic 40.0%
ACAAGAAATGAGAAGAGCAG+AGG - Chr1:17225502-17225521 None:intergenic 40.0%
ACCATTTCGACAACACTGAT+TGG + Chr1:17226450-17226469 MsG0180001198.01.T01:intron 40.0%
ACTAGGGCACAGATAAGAAT+CGG - Chr1:17227404-17227423 None:intergenic 40.0%
AGCAGCAATTTGGTACTTAC+TGG - Chr1:17228006-17228025 None:intergenic 40.0%
AGCCCTTTAGCATAGTTGTT+GGG + Chr1:17226213-17226232 MsG0180001198.01.T01:intron 40.0%
AGGTGAAAGAGATGGATGAA+AGG + Chr1:17228958-17228977 MsG0180001198.01.T01:CDS 40.0%
ATAACTAGATGGCTACACTG+TGG + Chr1:17228509-17228528 MsG0180001198.01.T01:intron 40.0%
ATAAGTACCATGCTCGCTAA+GGG + Chr1:17228783-17228802 MsG0180001198.01.T01:CDS 40.0%
CAAGAAATGAGAAGAGCAGA+GGG - Chr1:17225501-17225520 None:intergenic 40.0%
CAGTACTGCATATAAGTTGC+TGG - Chr1:17228361-17228380 None:intergenic 40.0%
CATAAACAGTAGCAGGGTAA+CGG + Chr1:17227103-17227122 MsG0180001198.01.T01:intron 40.0%
CCCGTGAATGGATAAAATGT+TGG + Chr1:17226271-17226290 MsG0180001198.01.T01:intron 40.0%
CCTGATCAGGAATCAATGTT+AGG + Chr1:17227046-17227065 MsG0180001198.01.T01:intron 40.0%
CTCTGCAGAATTACAACCAA+AGG - Chr1:17227713-17227732 None:intergenic 40.0%
CTTCAGCTCTTTGATCAGTA+TGG - Chr1:17226922-17226941 None:intergenic 40.0%
CTTTATGCTTTCGTCACAAG+AGG + Chr1:17225050-17225069 MsG0180001198.01.T01:intron 40.0%
GAAACATGAACGGTCCAATT+TGG - Chr1:17226968-17226987 None:intergenic 40.0%
GAACAATGGCAATGACAAGA+GGG - Chr1:17226817-17226836 None:intergenic 40.0%
GAATAACAAAGACAGCGGTT+AGG + Chr1:17223285-17223304 MsG0180001198.01.T01:intron 40.0%
GAATTCTTCAATGTCCTGCT+AGG - Chr1:17227571-17227590 None:intergenic 40.0%
GATGTTACTGAGTTGTGGTT+GGG - Chr1:17225299-17225318 None:intergenic 40.0%
GCCAAATCATTCTTCCTTGT+CGG - Chr1:17224611-17224630 None:intergenic 40.0%
GGGAAAATGTGGGATTACTT+TGG - Chr1:17224678-17224697 None:intergenic 40.0%
GTGGTTTCGACCAAAACATA+TGG - Chr1:17223462-17223481 None:intergenic 40.0%
TAACTAGATGGCTACACTGT+GGG + Chr1:17228510-17228529 MsG0180001198.01.T01:intron 40.0%
TAGCCCTTTAGCATAGTTGT+TGG + Chr1:17226212-17226231 MsG0180001198.01.T01:intron 40.0%
TAGGGAACATTGTGACAACA+AGG + Chr1:17224762-17224781 MsG0180001198.01.T01:intron 40.0%
TCCAATCAGTGTTGTCGAAA+TGG - Chr1:17226454-17226473 None:intergenic 40.0%
TCTTAACTGCATCAGCACTT+TGG - Chr1:17228749-17228768 None:intergenic 40.0%
TGAAACGGAAAGAAAGTGGA+TGG - Chr1:17225535-17225554 None:intergenic 40.0%
TGATGTTACTGAGTTGTGGT+TGG - Chr1:17225300-17225319 None:intergenic 40.0%
TGCAAAGATAGAGACCAAAG+TGG - Chr1:17224460-17224479 None:intergenic 40.0%
TGTCACAATGTTCCCTAACT+CGG - Chr1:17224759-17224778 None:intergenic 40.0%
TGTGTGTGTGTGTGCAATAA+TGG + Chr1:17224272-17224291 MsG0180001198.01.T01:intron 40.0%
TGTGTTTAGCGTTGTTGCAA+AGG + Chr1:17229100-17229119 MsG0180001198.01.T01:CDS 40.0%
TTCCGTTTCAGATCCTTCAT+GGG + Chr1:17225545-17225564 MsG0180001198.01.T01:intron 40.0%
TTGACCAATGTGGACATTCA+TGG + Chr1:17223855-17223874 MsG0180001198.01.T01:intron 40.0%
TTGGTACTTACTGGACTTGA+GGG - Chr1:17227997-17228016 None:intergenic 40.0%
TTTCCGTTTCAGATCCTTCA+TGG + Chr1:17225544-17225563 MsG0180001198.01.T01:intron 40.0%
TTTGAGGACTCTTTAAACGG+CGG + Chr1:17229239-17229258 MsG0180001198.01.T01:CDS 40.0%
TTTGATTCTGCTATGAGCCT+AGG - Chr1:17228451-17228470 None:intergenic 40.0%
TTTGCACTTCGTTGTCACAA+TGG + Chr1:17224474-17224493 MsG0180001198.01.T01:intron 40.0%
TTTGGTACTTACTGGACTTG+AGG - Chr1:17227998-17228017 None:intergenic 40.0%
! AACATCCTTAAAAGCACAGC+TGG + Chr1:17229341-17229360 MsG0180001198.01.T01:three_prime_UTR 40.0%
! AGCGGATGTGACAACTATTT+TGG + Chr1:17224584-17224603 MsG0180001198.01.T01:intron 40.0%
! AGTTGTTGGGTTTCAAGTGT+GGG + Chr1:17226226-17226245 MsG0180001198.01.T01:intron 40.0%
! ATCACTGATTACTTCCTAGC+AGG + Chr1:17227554-17227573 MsG0180001198.01.T01:intron 40.0%
! CAGGTCTGTTAGTTTAGAGT+AGG - Chr1:17223417-17223436 None:intergenic 40.0%
! CTAACGGAGGTACAAATACA+TGG - Chr1:17224530-17224549 None:intergenic 40.0%
! CTCGCTAAGGGTTTCATTTT+AGG + Chr1:17228795-17228814 MsG0180001198.01.T01:CDS 40.0%
! GATCTGAAACGGAAAGAAAG+TGG - Chr1:17225539-17225558 None:intergenic 40.0%
! GCGGATGTGACAACTATTTT+GGG + Chr1:17224585-17224604 MsG0180001198.01.T01:intron 40.0%
! GTGACGAAAGCATAAAGACA+GGG - Chr1:17225047-17225066 None:intergenic 40.0%
! TAGTTGTTGGGTTTCAAGTG+TGG + Chr1:17226225-17226244 MsG0180001198.01.T01:intron 40.0%
! TATTGCTGTTGCTGAGGAAA+AGG + Chr1:17229010-17229029 MsG0180001198.01.T01:CDS 40.0%
! TCAATCCAGCTGTGCTTTTA+AGG - Chr1:17229349-17229368 None:intergenic 40.0%
! TGTGACGAAAGCATAAAGAC+AGG - Chr1:17225048-17225067 None:intergenic 40.0%
! TTTTCCGGCAGAAGATGAAT+GGG - Chr1:17224713-17224732 None:intergenic 40.0%
!! AAGTGCTGATGCAGTTAAGA+AGG + Chr1:17228749-17228768 MsG0180001198.01.T01:CDS 40.0%
!! CCTAACATTGATTCCTGATC+AGG - Chr1:17227049-17227068 None:intergenic 40.0%
!! GATGAAAGGTATCAGCTTTC+TGG + Chr1:17228972-17228991 MsG0180001198.01.T01:CDS 40.0%
!! TACACTGTGGGTGTTGTTTA+TGG + Chr1:17228522-17228541 MsG0180001198.01.T01:intron 40.0%
!!! CTGTCATTTTCGGAACTAAC+AGG - Chr1:17229278-17229297 None:intergenic 40.0%
AAAGGGCTATAGTGCCACAA+TGG - Chr1:17226201-17226220 None:intergenic 45.0%
AACCTAACGCTAACGCCTTA+AGG + Chr1:17226317-17226336 MsG0180001198.01.T01:intron 45.0%
AATGAAACCCTTAGCGAGCA+TGG - Chr1:17228793-17228812 None:intergenic 45.0%
ACAAGCTGAGGTGGAAAAAC+AGG + Chr1:17229163-17229182 MsG0180001198.01.T01:CDS 45.0%
ACCACATATTAACGGCAACC+AGG - Chr1:17223146-17223165 None:intergenic 45.0%
ACTGTGTACATCCCGAGTTA+GGG + Chr1:17224744-17224763 MsG0180001198.01.T01:intron 45.0%
AGAGACAGCAGTTCTCTTGA+CGG + Chr1:17227785-17227804 MsG0180001198.01.T01:CDS 45.0%
AGAGCCATGAATGTCCACAT+TGG - Chr1:17223862-17223881 None:intergenic 45.0%
ATATGTCACCATCTCACCTG+TGG + Chr1:17227942-17227961 MsG0180001198.01.T01:CDS 45.0%
CAAGACGAATACCGTTGTGA+AGG - Chr1:17223644-17223663 None:intergenic 45.0%
CACATATTAACGGCAACCAG+GGG - Chr1:17223144-17223163 None:intergenic 45.0%
CAGGTGAGATGGTGACATAT+AGG - Chr1:17227942-17227961 None:intergenic 45.0%
CATCTCCACCCAAAACCTTA+AGG - Chr1:17226335-17226354 None:intergenic 45.0%
CCACATATTAACGGCAACCA+GGG - Chr1:17223145-17223164 None:intergenic 45.0%
CGAACAATGGCAATGACAAG+AGG - Chr1:17226818-17226837 None:intergenic 45.0%
CGTTACCCTGCTACTGTTTA+TGG - Chr1:17227105-17227124 None:intergenic 45.0%
GAACTAACAGGAACTACTGC+AGG - Chr1:17229266-17229285 None:intergenic 45.0%
GATGTACACAGTGGTTGCTT+GGG - Chr1:17224736-17224755 None:intergenic 45.0%
GATTGGAAAATTGAGGGTCG+AGG + Chr1:17226467-17226486 MsG0180001198.01.T01:intron 45.0%
GCATGCCATAAACAGTAGCA+GGG + Chr1:17227097-17227116 MsG0180001198.01.T01:intron 45.0%
GCCGACAAGGAAGAATGATT+TGG + Chr1:17224607-17224626 MsG0180001198.01.T01:intron 45.0%
GCTAGTGGCTCATAAACTTG+TGG + Chr1:17223526-17223545 MsG0180001198.01.T01:intron 45.0%
GCTATTGTTGGAGAGTCTAG+AGG - Chr1:17226413-17226432 None:intergenic 45.0%
GCTCATATGCTTGACCAATG+TGG + Chr1:17223845-17223864 MsG0180001198.01.T01:intron 45.0%
GGCTCACATAGAAATGCTAG+TGG + Chr1:17223511-17223530 MsG0180001198.01.T01:intron 45.0%
GGTCAAGCATATGAGCACAA+CGG - Chr1:17223841-17223860 None:intergenic 45.0%
GGTGTGATGTTACTGAGTTG+TGG - Chr1:17225304-17225323 None:intergenic 45.0%
GTAACGTGTTCCCACTATGA+TGG + Chr1:17225612-17225631 MsG0180001198.01.T01:intron 45.0%
GTCACAATGTTCCCTAACTC+GGG - Chr1:17224758-17224777 None:intergenic 45.0%
GTTGTCACATCCGCTGTTAA+TGG - Chr1:17224579-17224598 None:intergenic 45.0%
TATTGGGGATTCTCCACAAC+AGG + Chr1:17223951-17223970 MsG0180001198.01.T01:intron 45.0%
TGCATGCCATAAACAGTAGC+AGG + Chr1:17227096-17227115 MsG0180001198.01.T01:intron 45.0%
TGCTCCCTGTGAATCCTTAA+AGG - Chr1:17227766-17227785 None:intergenic 45.0%
TGCTCGCAACCTAGTCATTA+AGG + Chr1:17223662-17223681 MsG0180001198.01.T01:intron 45.0%
! AACCTTAAGGCGTTAGCGTT+AGG - Chr1:17226322-17226341 None:intergenic 45.0%
! ACGCTAACGCCTTAAGGTTT+TGG + Chr1:17226323-17226342 MsG0180001198.01.T01:intron 45.0%
! AGCTTGTTCAACCTTCTCCA+TGG - Chr1:17229150-17229169 None:intergenic 45.0%
! ATCTGCTATTGCTGTTGCTG+AGG + Chr1:17229004-17229023 MsG0180001198.01.T01:CDS 45.0%
! ATTTTGTGTGCAGGCATCAG+TGG + Chr1:17226895-17226914 MsG0180001198.01.T01:intron 45.0%
! CGCTAACGCCTTAAGGTTTT+GGG + Chr1:17226324-17226343 MsG0180001198.01.T01:intron 45.0%
! CTTGACTGACTCCTAGTTTC+AGG + Chr1:17228226-17228245 MsG0180001198.01.T01:intron 45.0%
! GAGGAAAAGGCAAGTATTGC+TGG + Chr1:17229023-17229042 MsG0180001198.01.T01:CDS 45.0%
! GTTTTCCGGCAGAAGATGAA+TGG - Chr1:17224714-17224733 None:intergenic 45.0%
!! ACAACTATTTTGGGCCGACA+AGG + Chr1:17224594-17224613 MsG0180001198.01.T01:intron 45.0%
!!! TAACGCCTTAAGGTTTTGGG+TGG + Chr1:17226327-17226346 MsG0180001198.01.T01:intron 45.0%
!!! TTCATTTTCAAAGCACCGGG+AGG - Chr1:17223484-17223503 None:intergenic 45.0%
!! TTGAAATATTAATAAAATTA+AGG + Chr1:17225114-17225133 MsG0180001198.01.T01:intron 5.0%
AACCACAGGACCAATGCACT+AGG - Chr1:17226380-17226399 None:intergenic 50.0%
ACGTCTTAACCGGAGCTTCA+TGG + Chr1:17229069-17229088 MsG0180001198.01.T01:CDS 50.0%
ATATTAACGGCAACCAGGGG+CGG - Chr1:17223141-17223160 None:intergenic 50.0%
ATTCGACAGCCATGAAGCTC+CGG - Chr1:17229081-17229100 None:intergenic 50.0%
CACAGCTGGATTGACCTTGT+TGG + Chr1:17229355-17229374 MsG0180001198.01.T01:three_prime_UTR 50.0%
CACTGTGTACATCCCGAGTT+AGG + Chr1:17224743-17224762 MsG0180001198.01.T01:intron 50.0%
CATTCACGGGTGAGTGATGT+GGG - Chr1:17226261-17226280 None:intergenic 50.0%
CCCTGGTTGCCGTTAATATG+TGG + Chr1:17223142-17223161 MsG0180001198.01.T01:CDS 50.0%
CTAACTCGGGATGTACACAG+TGG - Chr1:17224745-17224764 None:intergenic 50.0%
GAACTCGACAGTCTCTACTG+TGG - Chr1:17223791-17223810 None:intergenic 50.0%
GAAGCATGAGCCCTTCACAA+CGG + Chr1:17223630-17223649 MsG0180001198.01.T01:intron 50.0%
GAAGGTTGAACAAGCTGAGG+TGG + Chr1:17229154-17229173 MsG0180001198.01.T01:CDS 50.0%
GACCAATGCACTAGGACTAC+GGG - Chr1:17226372-17226391 None:intergenic 50.0%
GCTCCACAGCTACACCAAAT+TGG + Chr1:17226951-17226970 MsG0180001198.01.T01:CDS 50.0%
GGACCAATGCACTAGGACTA+CGG - Chr1:17226373-17226392 None:intergenic 50.0%
GGAGAAGGTTGAACAAGCTG+AGG + Chr1:17229151-17229170 MsG0180001198.01.T01:CDS 50.0%
GGATGTACACAGTGGTTGCT+TGG - Chr1:17224737-17224756 None:intergenic 50.0%
GTTGGAGAGTCTAGAGGTCA+CGG - Chr1:17226407-17226426 None:intergenic 50.0%
TACTGAGTTGTGGTTGGGTG+TGG - Chr1:17225294-17225313 None:intergenic 50.0%
TTGGAGAGTCTAGAGGTCAC+GGG - Chr1:17226406-17226425 None:intergenic 50.0%
! CAGTGGTTGCTTGGGTTTTC+CGG - Chr1:17224728-17224747 None:intergenic 50.0%
! TGTTGGGTTTCAAGTGTGGG+TGG + Chr1:17226229-17226248 MsG0180001198.01.T01:intron 50.0%
! TTTGGTGTAGCTGTGGAGCA+GGG - Chr1:17226950-17226969 None:intergenic 50.0%
! TTTTGGTCGAAACCACCTCC+CGG + Chr1:17223466-17223485 MsG0180001198.01.T01:intron 50.0%
!! ACTTGAGGGAAGTGCTTCAG+GGG - Chr1:17227983-17228002 None:intergenic 50.0%
!! ATTTGGTGTAGCTGTGGAGC+AGG - Chr1:17226951-17226970 None:intergenic 50.0%
!! GACTTGAGGGAAGTGCTTCA+GGG - Chr1:17227984-17228003 None:intergenic 50.0%
!! GGTCCAATTTGGTGTAGCTG+TGG - Chr1:17226957-17226976 None:intergenic 50.0%
!!! ATTTTCAAAGCACCGGGAGG+TGG - Chr1:17223481-17223500 None:intergenic 50.0%
ATGCACTAGGACTACGGGAG+AGG - Chr1:17226367-17226386 None:intergenic 55.0%
CAGCACGATGACCATGGAGA+AGG + Chr1:17229136-17229155 MsG0180001198.01.T01:CDS 55.0%
CCACATCACTCACCCGTGAA+TGG + Chr1:17226259-17226278 MsG0180001198.01.T01:intron 55.0%
CCATTCACGGGTGAGTGATG+TGG - Chr1:17226262-17226281 None:intergenic 55.0%
CGTTGTTGCAAAGGCAGCTG+AGG + Chr1:17229109-17229128 MsG0180001198.01.T01:CDS 55.0%
CTCCCGTAGTCCTAGTGCAT+TGG + Chr1:17226367-17226386 MsG0180001198.01.T01:intron 55.0%
GGATGTCAGCACGATGACCA+TGG + Chr1:17229130-17229149 MsG0180001198.01.T01:CDS 55.0%
GTACTGCTCCACAGGTGAGA+TGG - Chr1:17227953-17227972 None:intergenic 55.0%
TGCACTAGGACTACGGGAGA+GGG - Chr1:17226366-17226385 None:intergenic 55.0%
TGTAGCTGTGGAGCAGGGAA+TGG - Chr1:17226945-17226964 None:intergenic 55.0%
TGTGCCCTAGTGTCCTGTGT+TGG + Chr1:17227413-17227432 MsG0180001198.01.T01:intron 55.0%
! GAAGTGCTTCAGGGGGAAGT+TGG - Chr1:17227975-17227994 None:intergenic 55.0%
! GTCCTAGTGCATTGGTCCTG+TGG + Chr1:17226375-17226394 MsG0180001198.01.T01:intron 55.0%
!! CTTGAGGGAAGTGCTTCAGG+GGG - Chr1:17227982-17228001 None:intergenic 55.0%
!! GGAAGTTGGTACTGCTCCAC+AGG - Chr1:17227961-17227980 None:intergenic 55.0%
!! GGACTTGAGGGAAGTGCTTC+AGG - Chr1:17227985-17228004 None:intergenic 55.0%
GAGGTCACGGGAGAAACCAC+AGG - Chr1:17226394-17226413 None:intergenic 60.0%
GGATCTCTGTTGAGACCCCC+AGG - Chr1:17223120-17223139 None:intergenic 60.0%
TCTCAACAGAGATCCGCCCC+TGG + Chr1:17223125-17223144 MsG0180001198.01.T01:CDS 60.0%
GTTGAGACCCCCAGGTGCCA+TGG - Chr1:17223112-17223131 None:intergenic 65.0%
TGGGGGATGCCATGGCACCT+GGG + Chr1:17223100-17223119 MsG0180001198.01.T01:CDS 65.0%
TTGGGGGATGCCATGGCACC+TGG + Chr1:17223099-17223118 MsG0180001198.01.T01:CDS 65.0%
GGGGATGCCATGGCACCTGG+GGG + Chr1:17223102-17223121 MsG0180001198.01.T01:CDS 70.0%
GGGGGATGCCATGGCACCTG+GGG + Chr1:17223101-17223120 MsG0180001198.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 17223096 17229522 17223096 ID=MsG0180001198.01;Name=MsG0180001198.01
Chr1 mRNA 17223096 17229522 17223096 ID=MsG0180001198.01.T01;Parent=MsG0180001198.01;Name=MsG0180001198.01.T01;_AED=0.41;_eAED=0.41;_QI=0|0.5|0.6|0.8|1|1|5|200|297
Chr1 exon 17228741 17229522 17228741 ID=MsG0180001198.01.T01:exon:17474;Parent=MsG0180001198.01.T01
Chr1 exon 17227922 17228005 17227922 ID=MsG0180001198.01.T01:exon:17473;Parent=MsG0180001198.01.T01
Chr1 exon 17227731 17227806 17227731 ID=MsG0180001198.01.T01:exon:17472;Parent=MsG0180001198.01.T01
Chr1 exon 17226908 17226991 17226908 ID=MsG0180001198.01.T01:exon:17471;Parent=MsG0180001198.01.T01
Chr1 exon 17223096 17223163 17223096 ID=MsG0180001198.01.T01:exon:17470;Parent=MsG0180001198.01.T01
Chr1 CDS 17223096 17223163 17223096 ID=MsG0180001198.01.T01:cds;Parent=MsG0180001198.01.T01
Chr1 CDS 17226908 17226991 17226908 ID=MsG0180001198.01.T01:cds;Parent=MsG0180001198.01.T01
Chr1 CDS 17227731 17227806 17227731 ID=MsG0180001198.01.T01:cds;Parent=MsG0180001198.01.T01
Chr1 CDS 17227922 17228005 17227922 ID=MsG0180001198.01.T01:cds;Parent=MsG0180001198.01.T01
Chr1 CDS 17228741 17229322 17228741 ID=MsG0180001198.01.T01:cds;Parent=MsG0180001198.01.T01
Chr1 three_prime_UTR 17229323 17229522 17229323 ID=MsG0180001198.01.T01:three_prime_utr;Parent=MsG0180001198.01.T01
Gene Sequence

>MsG0180001198.01.T01

ATGTTGGGGGATGCCATGGCACCTGGGGGTCTCAACAGAGATCCGCCCCTGGTTGCCGTTAATATGTGGCATCAGTGGACCATACTGATCAAAGAGCTGAAGCCATTCCCTGCTCCACAGCTACACCAAATTGGACCGTTCATGTTTCAGATAGAATCTGATCGCACTCAAGTTGCTTATGTTACCTTTAAGGATTCACAGGGAGCAGAGACAGCAGTTCTCTTGACGGGTTCTAAGATAGGTGACCTATATGTCACCATCTCACCTGTGGAGCAGTACCAACTTCCCCCTGAAGCACTTCCCTCAAGTCCAACAAACCAAAGTGCTGATGCAGTTAAGAAGGCTGAAGATGTAATAAGTACCATGCTCGCTAAGGGTTTCATTTTAGGAAAGGATGCAATCAACAAGACAAAATCCATTGATGAACGTCTTCAATTGACGTCTAATGCTTCTTCTGCAGTTGCTTCTATTGATAATAAAATTGGTTTAAGTGATAAACTAAGTATTGGAACAACCATTGTCAATGAAAAGGTGAAAGAGATGGATGAAAGGTATCAGCTTTCTGGAATGACAAAATCTGCTATTGCTGTTGCTGAGGAAAAGGCAAGTATTGCTGGATCTGCTATCATGAGCAATTCTTACGTCTTAACCGGAGCTTCATGGCTGTCGAATGTGTTTAGCGTTGTTGCAAAGGCAGCTGAGGATGTCAGCACGATGACCATGGAGAAGGTTGAACAAGCTGAGGTGGAAAAACAGGACATCATTTACAGTGAAAGAAAAGGGACGGTTGATGAATATGCTCAGATGAACTTTGAGGACTCTTTAAACGGCGGTCCTGCAGTAGTTCCTGTTAGTTCCGAAAATGACAGTAAAGTTGGTAATTTTCTAACTTGA
Protein sequence

>MsG0180001198.01.T01

MLGDAMAPGGLNRDPPLVAVNMWHQWTILIKELKPFPAPQLHQIGPFMFQIESDRTQVAYVTFKDSQGAETAVLLTGSKIGDLYVTISPVEQYQLPPEALPSSPTNQSADAVKKAEDVISTMLAKGFILGKDAINKTKSIDERLQLTSNASSAVASIDNKIGLSDKLSIGTTIVNEKVKEMDERYQLSGMTKSAIAVAEEKASIAGSAIMSNSYVLTGASWLSNVFSVVAKAAEDVSTMTMEKVEQAEVEKQDIIYSERKGTVDEYAQMNFEDSLNGGPAVVPVSSENDSKVGNFLT*