Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180000446.01.T01 | XP_003588960.2 | 96.591 | 88 | 3 | 0 | 4 | 91 | 305 | 392 | 2.02E-52 | 178 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180000446.01.T01 | P49082 | 95.455 | 88 | 4 | 0 | 4 | 91 | 297 | 384 | 1.02E-54 | 176 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180000446.01.T01 | G7I9V0 | 96.591 | 88 | 3 | 0 | 4 | 91 | 305 | 392 | 9.66e-53 | 178 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080047814.01 | MsG0180000446.01 | 0.862348 | 5.400905e-64 | 1.576649e-60 |
MsG0180000001.01 | MsG0180000446.01 | 0.801078 | 1.066948e-48 | 5.049537e-46 |
MsG0180000446.01 | MsG0180001117.01 | 0.807058 | 6.085523e-50 | 3.356163e-47 |
MsG0180000446.01 | MsG0180001198.01 | 0.806679 | 7.315685e-50 | 3.995164e-47 |
MsG0180000446.01 | MsG0180001237.01 | 0.836583 | 8.594183e-57 | 1.087705e-53 |
MsG0180000446.01 | MsG0180001566.01 | 0.810894 | 9.186351e-51 | 5.605502e-48 |
MsG0180000446.01 | MsG0180002075.01 | 0.815122 | 1.086736e-51 | 7.427568e-49 |
MsG0180000446.01 | MsG0180002273.01 | 0.849284 | 3.570189e-60 | 6.734945e-57 |
MsG0180000446.01 | MsG0180004147.01 | 0.803544 | 3.313283e-49 | 1.669640e-46 |
MsG0180000446.01 | MsG0180004258.01 | 0.800595 | 1.338536e-48 | 6.257496e-46 |
MsG0180000446.01 | MsG0180004991.01 | 0.814089 | 1.839766e-51 | 1.222820e-48 |
MsG0180000446.01 | MsG0280006759.01 | 0.814384 | 1.583686e-51 | 1.061144e-48 |
MsG0180000446.01 | MsG0280007440.01 | 0.841341 | 5.038193e-58 | 7.380159e-55 |
MsG0180000446.01 | MsG0280007609.01 | 0.823854 | 1.107018e-53 | 9.645015e-51 |
MsG0180000446.01 | MsG0280007764.01 | 0.816459 | 5.470201e-52 | 3.878097e-49 |
MsG0180000446.01 | MsG0280007876.01 | 0.805328 | 1.407457e-49 | 7.425295e-47 |
MsG0180000446.01 | MsG0280008239.01 | 0.821162 | 4.675208e-53 | 3.774493e-50 |
MsG0180000446.01 | MsG0280010001.01 | 0.803637 | 3.170205e-49 | 1.601269e-46 |
MsG0180000446.01 | MsG0280010002.01 | 0.820859 | 5.490388e-53 | 4.395561e-50 |
MsG0180000446.01 | MsG0380013549.01 | 0.811238 | 7.738682e-51 | 4.764960e-48 |
MsG0180000446.01 | MsG0380015831.01 | 0.810646 | 1.039481e-50 | 6.300749e-48 |
MsG0180000446.01 | MsG0380016882.01 | 0.809081 | 2.256279e-50 | 1.312180e-47 |
MsG0180000446.01 | MsG0380016994.01 | 0.812720 | 3.677483e-51 | 2.355728e-48 |
MsG0180000446.01 | MsG0380017330.01 | 0.814179 | 1.758022e-51 | 1.171344e-48 |
MsG0180000446.01 | MsG0380017836.01 | 0.826399 | 2.771227e-54 | 2.596086e-51 |
MsG0180000446.01 | MsG0480021225.01 | 0.806231 | 9.095250e-50 | 4.910954e-47 |
MsG0180000446.01 | MsG0480022228.01 | 0.800759 | 1.239608e-48 | 5.818964e-46 |
MsG0180000446.01 | MsG0480023013.01 | 0.802060 | 6.711304e-49 | 3.255996e-46 |
MsG0180000446.01 | MsG0480023258.01 | 0.800939 | 1.138962e-48 | 5.371330e-46 |
MsG0180000446.01 | MsG0480023361.01 | 0.835555 | 1.567081e-56 | 1.922958e-53 |
MsG0180000446.01 | MsG0480023500.01 | 0.809245 | 2.081178e-50 | 1.215705e-47 |
MsG0180000446.01 | MsG0480023755.01 | 0.837969 | 3.798733e-57 | 5.016079e-54 |
MsG0180000446.01 | MsG0580025352.01 | 0.810192 | 1.302256e-50 | 7.798853e-48 |
MsG0180000446.01 | MsG0580025651.01 | 0.810364 | 1.196053e-50 | 7.195485e-48 |
MsG0180000446.01 | MsG0680030740.01 | 0.802001 | 6.900299e-49 | 3.342622e-46 |
MsG0180000446.01 | MsG0780036240.01 | 0.810238 | 1.273269e-50 | 7.634662e-48 |
MsG0180000446.01 | MsG0780038443.01 | 0.809584 | 1.760714e-50 | 1.037835e-47 |
MsG0180000446.01 | MsG0780038937.01 | 0.837710 | 4.425577e-57 | 5.797788e-54 |
MsG0180000446.01 | MsG0780040418.01 | 0.848302 | 6.685576e-60 | 1.221555e-56 |
MsG0180000446.01 | MsG0780040541.01 | 0.839465 | 1.559503e-57 | 2.155424e-54 |
MsG0180000446.01 | MsG0780040926.01 | 0.800524 | 1.384426e-48 | 6.460225e-46 |
MsG0180000446.01 | MsG0880042128.01 | 0.811291 | 7.536241e-51 | 4.646674e-48 |
MsG0180000446.01 | MsG0880042543.01 | 0.803192 | 3.919406e-49 | 1.957241e-46 |
MsG0180000446.01 | MsG0880042829.01 | 0.801585 | 8.399826e-49 | 4.026245e-46 |
MsG0180000446.01 | MsG0880043252.01 | 0.819631 | 1.049574e-52 | 8.120081e-50 |
MsG0180000446.01 | MsG0880046086.01 | 0.850869 | 1.284620e-60 | 2.552015e-57 |
MsG0180000446.01 | MsG0880046762.01 | 0.804050 | 2.601859e-49 | 1.328255e-46 |
MsG0180000446.01 | MsG0880046933.01 | 0.830874 | 2.296610e-55 | 2.450919e-52 |
MsG0180000446.01 | MsG0880047120.01 | 0.819123 | 1.370053e-52 | 1.045110e-49 |
MsG0180000446.01 | MsG0880047192.01 | 0.833545 | 5.014017e-56 | 5.793063e-53 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180000446.01.T01 | MTR_1g015750 | 96.591 | 88 | 3 | 0 | 4 | 91 | 305 | 392 | 2.45e-56 | 178 |
MsG0180000446.01.T01 | MTR_1g015750 | 96.591 | 88 | 3 | 0 | 4 | 91 | 297 | 384 | 2.65e-56 | 178 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180000446.01.T01 | AT2G26300 | 87.500 | 88 | 11 | 0 | 4 | 91 | 296 | 383 | 7.24e-52 | 166 |
MsG0180000446.01.T01 | AT2G26300 | 87.500 | 88 | 11 | 0 | 4 | 91 | 296 | 383 | 7.24e-52 | 166 |
Find 34 sgRNAs with CRISPR-Local
Find 69 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCTCCACATTCATCTTTAA+AGG | 0.198789 | 1:+6174945 | MsG0180000446.01.T01:three_prime_UTR |
GAAGAGGTGAGATCAGATTT+TGG | 0.248220 | 1:+6174815 | MsG0180000446.01.T01:three_prime_UTR |
CGCTATCCGGAGCAGTGTTC+TGG | 0.283333 | 1:-6174618 | None:intergenic |
TCCCTCTTATATAACATATA+TGG | 0.321851 | 1:-6174775 | None:intergenic |
ATGTCTTCTTCACAACCTTC+TGG | 0.325401 | 1:-6174681 | None:intergenic |
ATGTTCAATCTCTTGTTTCC+CGG | 0.350590 | 1:-6173777 | None:intergenic |
ATTTCTTGTAAAATCTTTGT+TGG | 0.379713 | 1:+6174887 | MsG0180000446.01.T01:three_prime_UTR |
TCTCCACATTCATCTTTAAA+GGG | 0.398409 | 1:+6174946 | MsG0180000446.01.T01:three_prime_UTR |
GACTACCAGCCACTTTCAAC+CGG | 0.403399 | 1:+6173758 | MsG0180000446.01.T01:CDS |
GACCATATATGTTATATAAG+AGG | 0.427557 | 1:+6174773 | MsG0180000446.01.T01:three_prime_UTR |
AACATATATGGTCCACTCAT+TGG | 0.452839 | 1:-6174763 | None:intergenic |
GAGACGGAGGAATCTCTTTG+AGG | 0.457860 | 1:+6174726 | MsG0180000446.01.T01:CDS |
CGGAGGAATCTCTTTGAGGC+TGG | 0.474033 | 1:+6174730 | MsG0180000446.01.T01:CDS |
AACACGCGGTCTACGCTATC+CGG | 0.486792 | 1:-6174631 | None:intergenic |
GTTTCCCGGTTGAAAGTGGC+TGG | 0.493695 | 1:-6173763 | None:intergenic |
ACCGCGTGTTTAAGATATAT+AGG | 0.512353 | 1:+6174644 | MsG0180000446.01.T01:CDS |
TCTTGTTTCCCGGTTGAAAG+TGG | 0.524400 | 1:-6173767 | None:intergenic |
AAAATCTTTGTTGGAGTGAG+TGG | 0.531296 | 1:+6174896 | MsG0180000446.01.T01:three_prime_UTR |
AACCACTCACATACATTAAG+CGG | 0.544573 | 1:-6173731 | None:intergenic |
TCTTTGTTGGAGTGAGTGGA+TGG | 0.546756 | 1:+6174900 | MsG0180000446.01.T01:three_prime_UTR |
ACCATATATGTTATATAAGA+GGG | 0.562322 | 1:+6174774 | MsG0180000446.01.T01:three_prime_UTR |
ATATTTCCAGAACACTGCTC+CGG | 0.563292 | 1:+6174612 | MsG0180000446.01.T01:CDS |
GACCACTGCACTTGACCAGA+AGG | 0.565096 | 1:+6174666 | MsG0180000446.01.T01:CDS |
TTCCCCTTTAAAGATGAATG+TGG | 0.570351 | 1:-6174949 | None:intergenic |
CTCCACATTCATCTTTAAAG+GGG | 0.572440 | 1:+6174947 | MsG0180000446.01.T01:three_prime_UTR |
TGGAGTGAGTGGATGGAGAA+AGG | 0.573704 | 1:+6174907 | MsG0180000446.01.T01:three_prime_UTR |
AACCTTCTGGTCAAGTGCAG+TGG | 0.574510 | 1:-6174668 | None:intergenic |
ACCACTCACATACATTAAGC+GGG | 0.592242 | 1:-6173730 | None:intergenic |
TTGATGAGACTTTGAGACGG+AGG | 0.624845 | 1:+6174713 | MsG0180000446.01.T01:CDS |
TTGTTGATGAGACTTTGAGA+CGG | 0.630412 | 1:+6174710 | MsG0180000446.01.T01:CDS |
ACTACCAGCCACTTTCAACC+GGG | 0.630833 | 1:+6173759 | MsG0180000446.01.T01:CDS |
TCCCGCTTAATGTATGTGAG+TGG | 0.652970 | 1:+6173729 | MsG0180000446.01.T01:CDS |
TCCTATATATCTTAAACACG+CGG | 0.695502 | 1:-6174645 | None:intergenic |
GGCTTGTTATGACCAATGAG+TGG | 0.702624 | 1:+6174751 | MsG0180000446.01.T01:exon |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAATATTTTTACAATGAAG+AGG | + | Chr1:6174799-6174818 | MsG0180000446.01.T01:three_prime_UTR | 15.0% |
!! | ACCATATATGTTATATAAGA+GGG | + | Chr1:6174774-6174793 | MsG0180000446.01.T01:three_prime_UTR | 20.0% |
!! | ATTTCTTGTAAAATCTTTGT+TGG | + | Chr1:6174887-6174906 | MsG0180000446.01.T01:three_prime_UTR | 20.0% |
!! | TCTCAGTTAAAATAAGTTAT+TGG | - | Chr1:6174368-6174387 | None:intergenic | 20.0% |
!! | TTTGGATAAACAACTTAATT+TGG | + | Chr1:6173874-6173893 | MsG0180000446.01.T01:intron | 20.0% |
!!! | TAATATAACATAGTCAGTTT+TGG | + | Chr1:6174167-6174186 | MsG0180000446.01.T01:intron | 20.0% |
! | AAGCTATTCTGAATAGTTTA+TGG | + | Chr1:6174002-6174021 | MsG0180000446.01.T01:intron | 25.0% |
! | AATCATGACGTAATTTATCA+TGG | - | Chr1:6174460-6174479 | None:intergenic | 25.0% |
! | AGTAACTTATTTATAGCCTT+AGG | + | Chr1:6173811-6173830 | MsG0180000446.01.T01:intron | 25.0% |
! | GACCATATATGTTATATAAG+AGG | + | Chr1:6174773-6174792 | MsG0180000446.01.T01:three_prime_UTR | 25.0% |
! | GTTTGTGAAGAAAAAATTTG+AGG | + | Chr1:6174585-6174604 | MsG0180000446.01.T01:CDS | 25.0% |
! | TCCCTCTTATATAACATATA+TGG | - | Chr1:6174778-6174797 | None:intergenic | 25.0% |
!! | ATTAAGTTGTTTATCCAAAC+AGG | - | Chr1:6173873-6173892 | None:intergenic | 25.0% |
!! | TTAAGTTGTTTATCCAAACA+GGG | - | Chr1:6173872-6173891 | None:intergenic | 25.0% |
ATCTCCACATTCATCTTTAA+AGG | + | Chr1:6174945-6174964 | MsG0180000446.01.T01:three_prime_UTR | 30.0% | |
TAATTCCTATGAACTTGTAG+TGG | - | Chr1:6174506-6174525 | None:intergenic | 30.0% | |
TCCTATATATCTTAAACACG+CGG | - | Chr1:6174648-6174667 | None:intergenic | 30.0% | |
TCTCCACATTCATCTTTAAA+GGG | + | Chr1:6174946-6174965 | MsG0180000446.01.T01:three_prime_UTR | 30.0% | |
! | ATGGACAAACTCTTTATTTC+AGG | + | Chr1:6174563-6174582 | MsG0180000446.01.T01:intron | 30.0% |
! | GCATTAGTTTACAAATGCTT+AGG | - | Chr1:6174323-6174342 | None:intergenic | 30.0% |
!! | TTTTGGGTATACTAGAAGTA+AGG | + | Chr1:6174832-6174851 | MsG0180000446.01.T01:three_prime_UTR | 30.0% |
AAAATCTTTGTTGGAGTGAG+TGG | + | Chr1:6174896-6174915 | MsG0180000446.01.T01:three_prime_UTR | 35.0% | |
AACATATATGGTCCACTCAT+TGG | - | Chr1:6174766-6174785 | None:intergenic | 35.0% | |
AACCACTCACATACATTAAG+CGG | - | Chr1:6173734-6173753 | None:intergenic | 35.0% | |
ACAAGCTTCAACATGAGTAT+GGG | - | Chr1:6174136-6174155 | None:intergenic | 35.0% | |
TACAAGCTTCAACATGAGTA+TGG | - | Chr1:6174137-6174156 | None:intergenic | 35.0% | |
TTTCTTACCTACGTTGAAAG+TGG | + | Chr1:6174478-6174497 | MsG0180000446.01.T01:intron | 35.0% | |
! | AAGAGGTGAGATCAGATTTT+GGG | + | Chr1:6174816-6174835 | MsG0180000446.01.T01:three_prime_UTR | 35.0% |
! | ACCGCGTGTTTAAGATATAT+AGG | + | Chr1:6174644-6174663 | MsG0180000446.01.T01:CDS | 35.0% |
! | ATGTTCAATCTCTTGTTTCC+CGG | - | Chr1:6173780-6173799 | None:intergenic | 35.0% |
! | CTCCACATTCATCTTTAAAG+GGG | + | Chr1:6174947-6174966 | MsG0180000446.01.T01:three_prime_UTR | 35.0% |
! | GATGAAAATAGCTTGTGACA+TGG | - | Chr1:6174052-6174071 | None:intergenic | 35.0% |
! | TTCCCCTTTAAAGATGAATG+TGG | - | Chr1:6174952-6174971 | None:intergenic | 35.0% |
! | TTGTTGATGAGACTTTGAGA+CGG | + | Chr1:6174710-6174729 | MsG0180000446.01.T01:CDS | 35.0% |
AATTTGGCGCTTATAGCACA+AGG | + | Chr1:6173890-6173909 | MsG0180000446.01.T01:intron | 40.0% | |
ACCACTCACATACATTAAGC+GGG | - | Chr1:6173733-6173752 | None:intergenic | 40.0% | |
AGGCTATAATTCAACGCCTA+AGG | - | Chr1:6173830-6173849 | None:intergenic | 40.0% | |
ATATTTCCAGAACACTGCTC+CGG | + | Chr1:6174612-6174631 | MsG0180000446.01.T01:CDS | 40.0% | |
ATGTCTTCTTCACAACCTTC+TGG | - | Chr1:6174684-6174703 | None:intergenic | 40.0% | |
ATTTGGCGCTTATAGCACAA+GGG | + | Chr1:6173891-6173910 | MsG0180000446.01.T01:intron | 40.0% | |
CAAGCTTCAACATGAGTATG+GGG | - | Chr1:6174135-6174154 | None:intergenic | 40.0% | |
TGGTACCACTACAAGTTCAT+AGG | + | Chr1:6174498-6174517 | MsG0180000446.01.T01:intron | 40.0% | |
! | GAAGAGGTGAGATCAGATTT+TGG | + | Chr1:6174815-6174834 | MsG0180000446.01.T01:three_prime_UTR | 40.0% |
!! | AAGCACTTCTGAGACTGTTT+CGG | - | Chr1:6174074-6174093 | None:intergenic | 40.0% |
AACATGAGTATGGGGAAGCT+TGG | - | Chr1:6174127-6174146 | None:intergenic | 45.0% | |
AGTGGTACCACTTTCAACGT+AGG | - | Chr1:6174488-6174507 | None:intergenic | 45.0% | |
TCCAGCGCAACGAATTAACA+TGG | + | Chr1:6174544-6174563 | MsG0180000446.01.T01:intron | 45.0% | |
TCCATGTTAATTCGTTGCGC+TGG | - | Chr1:6174548-6174567 | None:intergenic | 45.0% | |
TCCCGCTTAATGTATGTGAG+TGG | + | Chr1:6173729-6173748 | MsG0180000446.01.T01:CDS | 45.0% | |
TCTTTGTTGGAGTGAGTGGA+TGG | + | Chr1:6174900-6174919 | MsG0180000446.01.T01:three_prime_UTR | 45.0% | |
! | TCTTGTTTCCCGGTTGAAAG+TGG | - | Chr1:6173770-6173789 | None:intergenic | 45.0% |
!! | AGCCTTGAGCATTGAAGACT+TGG | + | Chr1:6173845-6173864 | MsG0180000446.01.T01:intron | 45.0% |
!! | GCCTTGAGCATTGAAGACTT+GGG | + | Chr1:6173846-6173865 | MsG0180000446.01.T01:intron | 45.0% |
!! | GGCTTGTTATGACCAATGAG+TGG | + | Chr1:6174751-6174770 | MsG0180000446.01.T01:exon | 45.0% |
!! | TTGATGAGACTTTGAGACGG+AGG | + | Chr1:6174713-6174732 | MsG0180000446.01.T01:CDS | 45.0% |
AACCTTCTGGTCAAGTGCAG+TGG | - | Chr1:6174671-6174690 | None:intergenic | 50.0% | |
GAGACGGAGGAATCTCTTTG+AGG | + | Chr1:6174726-6174745 | MsG0180000446.01.T01:CDS | 50.0% | |
GCCCAAGTCTTCAATGCTCA+AGG | - | Chr1:6173850-6173869 | None:intergenic | 50.0% | |
TGAGTATGGGGAAGCTTGGA+TGG | - | Chr1:6174123-6174142 | None:intergenic | 50.0% | |
TGGAGTGAGTGGATGGAGAA+AGG | + | Chr1:6174907-6174926 | MsG0180000446.01.T01:three_prime_UTR | 50.0% | |
TTGAAGACTTGGGCCCTGTT+TGG | + | Chr1:6173856-6173875 | MsG0180000446.01.T01:intron | 50.0% | |
! | ACTACCAGCCACTTTCAACC+GGG | + | Chr1:6173759-6173778 | MsG0180000446.01.T01:CDS | 50.0% |
! | GACTACCAGCCACTTTCAAC+CGG | + | Chr1:6173758-6173777 | MsG0180000446.01.T01:CDS | 50.0% |
AACACGCGGTCTACGCTATC+CGG | - | Chr1:6174634-6174653 | None:intergenic | 55.0% | |
AATTCGTTGCGCTGGACTGC+TGG | - | Chr1:6174540-6174559 | None:intergenic | 55.0% | |
GACCACTGCACTTGACCAGA+AGG | + | Chr1:6174666-6174685 | MsG0180000446.01.T01:CDS | 55.0% | |
GTTTCCCGGTTGAAAGTGGC+TGG | - | Chr1:6173766-6173785 | None:intergenic | 55.0% | |
!! | CGGAGGAATCTCTTTGAGGC+TGG | + | Chr1:6174730-6174749 | MsG0180000446.01.T01:CDS | 55.0% |
CGCTATCCGGAGCAGTGTTC+TGG | - | Chr1:6174621-6174640 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 6173710 | 6175058 | 6173710 | ID=MsG0180000446.01;Name=MsG0180000446.01 |
Chr1 | mRNA | 6173710 | 6175058 | 6173710 | ID=MsG0180000446.01.T01;Parent=MsG0180000446.01;Name=MsG0180000446.01.T01;_AED=0.50;_eAED=0.50;_QI=0|1|0.5|1|1|1|2|296|91 |
Chr1 | exon | 6174585 | 6175058 | 6174585 | ID=MsG0180000446.01.T01:exon:27977;Parent=MsG0180000446.01.T01 |
Chr1 | exon | 6173710 | 6173807 | 6173710 | ID=MsG0180000446.01.T01:exon:27976;Parent=MsG0180000446.01.T01 |
Chr1 | CDS | 6173710 | 6173807 | 6173710 | ID=MsG0180000446.01.T01:cds;Parent=MsG0180000446.01.T01 |
Chr1 | CDS | 6174585 | 6174762 | 6174585 | ID=MsG0180000446.01.T01:cds;Parent=MsG0180000446.01.T01 |
Chr1 | three_prime_UTR | 6174763 | 6175058 | 6174763 | ID=MsG0180000446.01.T01:three_prime_utr;Parent=MsG0180000446.01.T01 |
Gene Sequence |
Protein sequence |