AlfalfaGEDB | MsG0180003672.01

M. sativa cultivar ZhongmuNo.1 / MsG0180003672.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180003672.01.T01	XP_013468326.1	96.498	257	9	0	1	257	1	257	0	507

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180003672.01.T01	G7ZZJ2	96.498	257	9	0	1	257	1	257	0.0	507

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048036.01	MsG0180003672.01	0.800239	1.582329e-48	7.330480e-46
MsG0080049018.01	MsG0180003672.01	-0.819552	1.094027e-52	8.445523e-50
MsG0180000423.01	MsG0180003672.01	-0.818145	2.283066e-52	1.695196e-49
MsG0180003672.01	MsG0180003687.01	0.905218	5.412229e-80	8.665933e-76
MsG0180003672.01	MsG0180003758.01	-0.810607	1.059954e-50	6.418035e-48
MsG0180003672.01	MsG0180004502.01	-0.800649	1.305090e-48	6.109592e-46
MsG0180003672.01	MsG0180005648.01	0.812037	5.184925e-51	3.260910e-48
MsG0180003672.01	MsG0280006442.01	0.807542	4.803035e-50	2.682465e-47
MsG0180003672.01	MsG0280006973.01	-0.800897	1.161449e-48	5.471672e-46
MsG0180003672.01	MsG0280009079.01	-0.805511	1.288484e-49	6.829372e-47

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PPI

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Gene1	Gene2	Type
MsG0180003672.01	MsG0180003687.01	PPI
MsG0180003672.01	MsG0180003712.01	PPI
MsG0180003687.01	MsG0180003672.01	PPI
MsG0780040858.01	MsG0180003672.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180003672.01.T01	MTR_1g068825	96.498	257	9	0	1	257	1	257	0.0	507
MsG0180003672.01.T01	MTR_7g099950	44.314	255	125	5	1	243	85	334	4.24e-35	128

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180003672.01.T01	AT3G53670	41.007	139	76	4	78	215	66	199	2.76e-15	72.8
MsG0180003672.01.T01	AT3G53670	41.007	139	76	4	78	215	66	199	2.76e-15	72.8
MsG0180003672.01.T01	AT2G37480	42.520	127	54	4	73	193	58	171	2.75e-14	69.7
MsG0180003672.01.T01	AT2G37480	41.732	127	54	4	73	193	58	170	1.96e-13	67.4

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Find 63 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTGTATCTGCCATGA+AGG	0.537609	1:+66409353	MsG0180003672.01.T01:CDS
AAACTTGTATCTGCCATGAA+GGG	0.622758	1:+66409354	MsG0180003672.01.T01:CDS
AAATGAAATTGTCTGTTAAA+TGG	0.168633	1:+66409403	MsG0180003672.01.T01:CDS
AACCTTTCCTTATCCTGATA+CGG	0.431985	1:+66408524	MsG0180003672.01.T01:CDS
AAGAAACCACACTAAAAGTG+AGG	0.668513	1:+66408484	MsG0180003672.01.T01:CDS
AAGCTCTTCTGATGACGAGG+AGG	0.662047	1:+66408557	MsG0180003672.01.T01:CDS
AATCCTTTGCCACAAGATTC+TGG	0.274308	1:-66409600	None:intergenic
AATGAAATTGTCTGTTAAAT+GGG	0.413068	1:+66409404	MsG0180003672.01.T01:CDS
ACATGTATCTGATGATGATG+AGG	0.654147	1:+66408404	MsG0180003672.01.T01:CDS
ACCGAAAGTCCTTGCCATGT+CGG	0.626598	1:+66409705	MsG0180003672.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCAAGAAGAGTGAAAAGAA+AGG	+	Chr1:66409501-66409520	MsG0180003672.01.T01:CDS	30.0%
CTAAGAAACAACATAAATCC+CGG	+	Chr1:66409478-66409497	MsG0180003672.01.T01:CDS	30.0%
GGTAGTAGTAACTGTAATAT+TGG	+	Chr1:66408429-66408448	MsG0180003672.01.T01:CDS	30.0%
GTATGTTTGTATCATATGGT+GGG	-	Chr1:66408872-66408891	None:intergenic	30.0%
TGAACACAATTAGAACTTAC+CGG	-	Chr1:66408639-66408658	None:intergenic	30.0%
TGATATAGGAGACAAAATCA+AGG	-	Chr1:66409749-66409768	None:intergenic	30.0%
TGTATGTTTGTATCATATGG+TGG	-	Chr1:66408873-66408892	None:intergenic	30.0%
AAAACTTGTATCTGCCATGA+AGG	+	Chr1:66409353-66409372	MsG0180003672.01.T01:CDS	35.0%
AAACTTGTATCTGCCATGAA+GGG	+	Chr1:66409354-66409373	MsG0180003672.01.T01:CDS	35.0%
AACCTTTCCTTATCCTGATA+CGG	+	Chr1:66408524-66408543	MsG0180003672.01.T01:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	66408300	66409779	66408300	ID=MsG0180003672.01;Name=MsG0180003672.01
Chr1	mRNA	66408300	66409779	66408300	ID=MsG0180003672.01.T01;Parent=MsG0180003672.01;Name=MsG0180003672.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|0\|0\|1\|1\|1\|2\|0\|257
Chr1	exon	66408300	66408638	66408300	ID=MsG0180003672.01.T01:exon:29877;Parent=MsG0180003672.01.T01
Chr1	exon	66409345	66409779	66409345	ID=MsG0180003672.01.T01:exon:29876;Parent=MsG0180003672.01.T01
Chr1	CDS	66408300	66408638	66408300	ID=MsG0180003672.01.T01:cds;Parent=MsG0180003672.01.T01
Chr1	CDS	66409345	66409779	66409345	ID=MsG0180003672.01.T01:cds;Parent=MsG0180003672.01.T01

Gene Sequence

>MsG0180003672.01.T01

ATGGACATCCACTCTCCTGCGAATGTTGTCGGGTGCGATATCATAAGTAAACTTGAAATTACTTTTGGTGGGTCATTACATATACAAGATGATCAAAAGTTAGAACATGTATCTGATGATGATGAGGATGGTAGTAGTAACTGTAATATTGGGGAGGGACACATATGTGGTGGGTTTGAACAGGAAGAAACCACACTAAAAGTGAGGAGCTTGAAGGAGTGTTCAACCTTTCCTTATCCTGATACGGTGTTGCCTTCAAGCTCTTCTGATGACGAGGAGGCTGATGGAGCATTGACAGAGTCACTCTCTACACAACTTCCAGACTCGGTTTCTCAGCCGGCACCTGCAAAACTTGTATCTGCCATGAAGGGTAGCCGCGAGAAACACTTGGGATCGCAAATGAAATTGTCTGTTAAATGGGCCCCTGATGTGTATGATCCGGTGCCAACATTGTCGTCACATACCGTGAGAACTAAGAAACAACATAAATCCCGGATCAAGAAGAGTGAAAAGAAAGGTGTAAAGAAAAGTCAGAAGGGCAGCTATTCTAAAGGGTGTAGCAGCAAAGATAAGAAGCAGTATCGCTATAGATGGCCAGAATCTTGTGGCAAAGGATTTGATGCTTCAATGGAATTAAATAATCTCGACGTTGCTGGCTATGATTCATACCATGCAACTAGCATCTCAAAAATACCAGCTACCGAAAGTCCTTGCCATGTCGGAGAAGCTATGAGCAACTTCCTTGATTTTGTCTCCTATATCAAGACTGCATAA

Protein sequence

>MsG0180003672.01.T01

MDIHSPANVVGCDIISKLEITFGGSLHIQDDQKLEHVSDDDEDGSSNCNIGEGHICGGFEQEETTLKVRSLKECSTFPYPDTVLPSSSSDDEEADGALTESLSTQLPDSVSQPAPAKLVSAMKGSREKHLGSQMKLSVKWAPDVYDPVPTLSSHTVRTKKQHKSRIKKSEKKGVKKSQKGSYSKGCSSKDKKQYRYRWPESCGKGFDASMELNNLDVAGYDSYHATSISKIPATESPCHVGEAMSNFLDFVSYIKTA*