Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003672.01.T01 | XP_013468326.1 | 96.498 | 257 | 9 | 0 | 1 | 257 | 1 | 257 | 0 | 507 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003672.01.T01 | G7ZZJ2 | 96.498 | 257 | 9 | 0 | 1 | 257 | 1 | 257 | 0.0 | 507 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048036.01 | MsG0180003672.01 | 0.800239 | 1.582329e-48 | 7.330480e-46 |
| MsG0080049018.01 | MsG0180003672.01 | -0.819552 | 1.094027e-52 | 8.445523e-50 |
| MsG0180000423.01 | MsG0180003672.01 | -0.818145 | 2.283066e-52 | 1.695196e-49 |
| MsG0180003672.01 | MsG0180003687.01 | 0.905218 | 5.412229e-80 | 8.665933e-76 |
| MsG0180003672.01 | MsG0180003758.01 | -0.810607 | 1.059954e-50 | 6.418035e-48 |
| MsG0180003672.01 | MsG0180004502.01 | -0.800649 | 1.305090e-48 | 6.109592e-46 |
| MsG0180003672.01 | MsG0180005648.01 | 0.812037 | 5.184925e-51 | 3.260910e-48 |
| MsG0180003672.01 | MsG0280006442.01 | 0.807542 | 4.803035e-50 | 2.682465e-47 |
| MsG0180003672.01 | MsG0280006973.01 | -0.800897 | 1.161449e-48 | 5.471672e-46 |
| MsG0180003672.01 | MsG0280009079.01 | -0.805511 | 1.288484e-49 | 6.829372e-47 |
| MsG0180003672.01 | MsG0280009864.01 | -0.825803 | 3.840246e-54 | 3.537091e-51 |
| MsG0180003672.01 | MsG0380012065.01 | -0.804098 | 2.542929e-49 | 1.299746e-46 |
| MsG0180003672.01 | MsG0380014642.01 | -0.818296 | 2.111291e-52 | 1.574140e-49 |
| MsG0180003672.01 | MsG0380014735.01 | -0.808157 | 3.555792e-50 | 2.018203e-47 |
| MsG0180003672.01 | MsG0380016086.01 | 0.807530 | 4.832948e-50 | 2.698308e-47 |
| MsG0180003672.01 | MsG0380016229.01 | -0.806324 | 8.691776e-50 | 4.704017e-47 |
| MsG0180003672.01 | MsG0380016354.01 | -0.807268 | 5.492446e-50 | 3.045765e-47 |
| MsG0180003672.01 | MsG0380016881.01 | -0.802367 | 5.801495e-49 | 2.836874e-46 |
| MsG0180003672.01 | MsG0380017405.01 | -0.800647 | 1.306635e-48 | 6.116394e-46 |
| MsG0180003672.01 | MsG0380018066.01 | -0.810046 | 1.400209e-50 | 8.354337e-48 |
| MsG0180003672.01 | MsG0480021327.01 | -0.801050 | 1.081088e-48 | 5.112864e-46 |
| MsG0180003672.01 | MsG0480022626.01 | -0.822240 | 2.633014e-53 | 2.191412e-50 |
| MsG0180003672.01 | MsG0480023056.01 | -0.819182 | 1.328586e-52 | 1.015110e-49 |
| MsG0180003672.01 | MsG0480023152.01 | -0.826111 | 3.246062e-54 | 3.015952e-51 |
| MsG0180003672.01 | MsG0480023469.01 | -0.803340 | 3.653122e-49 | 1.831095e-46 |
| MsG0180003672.01 | MsG0480023850.01 | -0.834194 | 3.451408e-56 | 4.065513e-53 |
| MsG0180003672.01 | MsG0580024408.01 | 0.811698 | 6.146399e-51 | 3.830652e-48 |
| MsG0180003672.01 | MsG0580024493.01 | -0.807909 | 4.014743e-50 | 2.263633e-47 |
| MsG0180003672.01 | MsG0580025447.01 | -0.808631 | 2.817371e-50 | 1.618931e-47 |
| MsG0180003672.01 | MsG0580027325.01 | -0.834902 | 2.291623e-56 | 2.757409e-53 |
| MsG0180003672.01 | MsG0580029706.01 | -0.802880 | 4.546858e-49 | 2.252523e-46 |
| MsG0180003672.01 | MsG0580030133.01 | 0.805387 | 1.368096e-49 | 7.228347e-47 |
| MsG0180003672.01 | MsG0580030135.01 | 0.813360 | 2.662863e-51 | 1.735338e-48 |
| MsG0180003672.01 | MsG0680035584.01 | -0.808717 | 2.699458e-50 | 1.554689e-47 |
| MsG0180003672.01 | MsG0780038030.01 | -0.808786 | 2.609746e-50 | 1.505759e-47 |
| MsG0180003672.01 | MsG0780038834.01 | -0.827514 | 1.500469e-54 | 1.451689e-51 |
| MsG0180003672.01 | MsG0780039287.01 | -0.800230 | 1.588825e-48 | 7.358954e-46 |
| MsG0180003672.01 | MsG0780039839.01 | -0.813012 | 3.174246e-51 | 2.049053e-48 |
| MsG0180003672.01 | MsG0780040429.01 | -0.801614 | 8.285755e-49 | 3.974444e-46 |
| MsG0180003672.01 | MsG0780040838.01 | -0.807843 | 4.145679e-50 | 2.333520e-47 |
| MsG0180003672.01 | MsG0780041783.01 | -0.804139 | 2.493232e-49 | 1.275682e-46 |
| MsG0180003672.01 | MsG0880041908.01 | -0.806945 | 6.429866e-50 | 3.535674e-47 |
| MsG0180003672.01 | MsG0880043828.01 | 0.807559 | 4.763845e-50 | 2.661669e-47 |
| MsG0180003672.01 | MsG0880046341.01 | -0.810278 | 1.248311e-50 | 7.492684e-48 |
| MsG0180003672.01 | MsG0880046429.01 | 0.808238 | 3.416660e-50 | 1.943385e-47 |
| MsG0180003672.01 | MsG0880046469.01 | -0.802537 | 5.351834e-49 | 2.628215e-46 |
| MsG0180003672.01 | MsG0880046584.01 | -0.813759 | 2.175338e-51 | 1.432969e-48 |
| MsG0180003672.01 | MsG0880046639.01 | -0.814709 | 1.342102e-51 | 9.071353e-49 |
| MsG0180003672.01 | MsG0880047406.01 | -0.825795 | 3.858381e-54 | 3.553018e-51 |
| MsG0180003672.01 | MsG0880047665.01 | 0.819893 | 9.144257e-53 | 7.126909e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0180003687.01 | MsG0180003672.01 | PPI |
| MsG0780040858.01 | MsG0180003672.01 | PPI |
| MsG0180003672.01 | MsG0180003687.01 | PPI |
| MsG0180003672.01 | MsG0180003712.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003672.01.T01 | MTR_1g068825 | 96.498 | 257 | 9 | 0 | 1 | 257 | 1 | 257 | 0.0 | 507 |
| MsG0180003672.01.T01 | MTR_7g099950 | 44.314 | 255 | 125 | 5 | 1 | 243 | 85 | 334 | 4.24e-35 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003672.01.T01 | AT3G53670 | 41.007 | 139 | 76 | 4 | 78 | 215 | 66 | 199 | 2.76e-15 | 72.8 |
| MsG0180003672.01.T01 | AT3G53670 | 41.007 | 139 | 76 | 4 | 78 | 215 | 66 | 199 | 2.76e-15 | 72.8 |
| MsG0180003672.01.T01 | AT2G37480 | 42.520 | 127 | 54 | 4 | 73 | 193 | 58 | 171 | 2.75e-14 | 69.7 |
| MsG0180003672.01.T01 | AT2G37480 | 41.732 | 127 | 54 | 4 | 73 | 193 | 58 | 170 | 1.96e-13 | 67.4 |
Find 63 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGAAATTGTCTGTTAAA+TGG | 0.168633 | 1:+66409403 | MsG0180003672.01.T01:CDS |
| AATCCTTTGCCACAAGATTC+TGG | 0.274308 | 1:-66409600 | None:intergenic |
| GGTAGTAGTAACTGTAATAT+TGG | 0.282358 | 1:+66408429 | MsG0180003672.01.T01:CDS |
| AGTAAACTTGAAATTACTTT+TGG | 0.301816 | 1:+66408345 | MsG0180003672.01.T01:CDS |
| CTTGAAGGCAACACCGTATC+AGG | 0.316264 | 1:-66408537 | None:intergenic |
| GTAGTAGTAACTGTAATATT+GGG | 0.335267 | 1:+66408430 | MsG0180003672.01.T01:CDS |
| TTTCTCGCGGCTACCCTTCA+TGG | 0.337552 | 1:-66409367 | None:intergenic |
| TCCGACATGGCAAGGACTTT+CGG | 0.354930 | 1:-66409706 | None:intergenic |
| CACTCTCCTGCGAATGTTGT+CGG | 0.355819 | 1:+66408309 | MsG0180003672.01.T01:CDS |
| TTAAATAATCTCGACGTTGC+TGG | 0.364240 | 1:+66409639 | MsG0180003672.01.T01:CDS |
| AATGAAATTGTCTGTTAAAT+GGG | 0.413068 | 1:+66409404 | MsG0180003672.01.T01:CDS |
| CAAAGGATTTGATGCTTCAA+TGG | 0.415687 | 1:+66409614 | MsG0180003672.01.T01:CDS |
| AACCTTTCCTTATCCTGATA+CGG | 0.431985 | 1:+66408524 | MsG0180003672.01.T01:CDS |
| TCGTCATCAGAAGAGCTTGA+AGG | 0.452918 | 1:-66408552 | None:intergenic |
| CATATGTGGTGGGTTTGAAC+AGG | 0.469286 | 1:+66408461 | MsG0180003672.01.T01:CDS |
| TCCAGACTCGGTTTCTCAGC+CGG | 0.470198 | 1:+66408617 | MsG0180003672.01.T01:CDS |
| ACCGGCTGAGAAACCGAGTC+TGG | 0.472530 | 1:-66408618 | None:intergenic |
| ACTCTCCTGCGAATGTTGTC+GGG | 0.473024 | 1:+66408310 | MsG0180003672.01.T01:CDS |
| GACTTATGCAGTCTTGATAT+AGG | 0.475805 | 1:-66409760 | None:intergenic |
| TGGCAAGGACTTTCGGTAGC+TGG | 0.476961 | 1:-66409699 | None:intergenic |
| AGAAGCAGTATCGCTATAGA+TGG | 0.477970 | 1:+66409577 | MsG0180003672.01.T01:CDS |
| TCTGATGACGAGGAGGCTGA+TGG | 0.485008 | 1:+66408564 | MsG0180003672.01.T01:CDS |
| CTCTACACAACTTCCAGACT+CGG | 0.490684 | 1:+66408605 | MsG0180003672.01.T01:CDS |
| GGCAACACCGTATCAGGATA+AGG | 0.496540 | 1:-66408531 | None:intergenic |
| GGCACCGGATCATACACATC+AGG | 0.503927 | 1:-66409429 | None:intergenic |
| CAGAAGGGCAGCTATTCTAA+AGG | 0.505063 | 1:+66409537 | MsG0180003672.01.T01:CDS |
| ATGTTGTTTCTTAGTTCTCA+CGG | 0.517557 | 1:-66409469 | None:intergenic |
| ACTAAAAGTGAGGAGCTTGA+AGG | 0.525677 | 1:+66408494 | MsG0180003672.01.T01:CDS |
| AGAAGGGCAGCTATTCTAAA+GGG | 0.525902 | 1:+66409538 | MsG0180003672.01.T01:CDS |
| AAAACTTGTATCTGCCATGA+AGG | 0.537609 | 1:+66409353 | MsG0180003672.01.T01:CDS |
| GGGTAGCCGCGAGAAACACT+TGG | 0.556191 | 1:+66409374 | MsG0180003672.01.T01:CDS |
| TGGCCAGAATCTTGTGGCAA+AGG | 0.557338 | 1:+66409597 | MsG0180003672.01.T01:CDS |
| TGCTCATAGCTTCTCCGACA+TGG | 0.557738 | 1:-66409719 | None:intergenic |
| CGACAACATTCGCAGGAGAG+TGG | 0.559396 | 1:-66408308 | None:intergenic |
| AGGTGTAAAGAAAAGTCAGA+AGG | 0.565051 | 1:+66409521 | MsG0180003672.01.T01:CDS |
| CTAAGAAACAACATAAATCC+CGG | 0.580812 | 1:+66409478 | MsG0180003672.01.T01:CDS |
| ATTGGGGAGGGACACATATG+TGG | 0.592835 | 1:+66408447 | MsG0180003672.01.T01:CDS |
| ATAGCTTCTCCGACATGGCA+AGG | 0.593291 | 1:-66409714 | None:intergenic |
| AGTAACTGTAATATTGGGGA+GGG | 0.594128 | 1:+66408435 | MsG0180003672.01.T01:CDS |
| GGCCCCTGATGTGTATGATC+CGG | 0.600130 | 1:+66409425 | MsG0180003672.01.T01:CDS |
| ATCAAGAAGAGTGAAAAGAA+AGG | 0.600790 | 1:+66409501 | MsG0180003672.01.T01:CDS |
| TCGCACCCGACAACATTCGC+AGG | 0.602135 | 1:-66408315 | None:intergenic |
| TGTGACGACAATGTTGGCAC+CGG | 0.602355 | 1:-66409444 | None:intergenic |
| TAGTAGTAACTGTAATATTG+GGG | 0.605374 | 1:+66408431 | MsG0180003672.01.T01:CDS |
| TGATATAGGAGACAAAATCA+AGG | 0.608502 | 1:-66409746 | None:intergenic |
| TTCAAGCTCTTCTGATGACG+AGG | 0.614405 | 1:+66408554 | MsG0180003672.01.T01:CDS |
| GGTGTAAAGAAAAGTCAGAA+GGG | 0.615586 | 1:+66409522 | MsG0180003672.01.T01:CDS |
| GGGGAGGGACACATATGTGG+TGG | 0.617375 | 1:+66408450 | MsG0180003672.01.T01:CDS |
| ACGGTATGTGACGACAATGT+TGG | 0.618744 | 1:-66409450 | None:intergenic |
| GGGAGGGACACATATGTGGT+GGG | 0.620596 | 1:+66408451 | MsG0180003672.01.T01:CDS |
| AAACTTGTATCTGCCATGAA+GGG | 0.622758 | 1:+66409354 | MsG0180003672.01.T01:CDS |
| GCACCGGATCATACACATCA+GGG | 0.623292 | 1:-66409428 | None:intergenic |
| ACCGAAAGTCCTTGCCATGT+CGG | 0.626598 | 1:+66409705 | MsG0180003672.01.T01:CDS |
| CACCGTATCAGGATAAGGAA+AGG | 0.628831 | 1:-66408526 | None:intergenic |
| TATAGATGGCCAGAATCTTG+TGG | 0.629442 | 1:+66409591 | MsG0180003672.01.T01:CDS |
| GGTAGCCGCGAGAAACACTT+GGG | 0.637014 | 1:+66409375 | MsG0180003672.01.T01:CDS |
| TAGTAACTGTAATATTGGGG+AGG | 0.638150 | 1:+66408434 | MsG0180003672.01.T01:CDS |
| ACATGTATCTGATGATGATG+AGG | 0.654147 | 1:+66408404 | MsG0180003672.01.T01:CDS |
| AAGCTCTTCTGATGACGAGG+AGG | 0.662047 | 1:+66408557 | MsG0180003672.01.T01:CDS |
| AAGAAACCACACTAAAAGTG+AGG | 0.668513 | 1:+66408484 | MsG0180003672.01.T01:CDS |
| GCGATCCCAAGTGTTTCTCG+CGG | 0.669443 | 1:-66409380 | None:intergenic |
| CACCGGATCATACACATCAG+GGG | 0.699399 | 1:-66409427 | None:intergenic |
| GTATCTGATGATGATGAGGA+TGG | 0.713196 | 1:+66408408 | MsG0180003672.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACATACACTTTATTTTAAA+TGG | + | Chr1:66409124-66409143 | MsG0180003672.01.T01:intron | 15.0% |
| !!! | ACATACACTTTATTTTAAAT+GGG | + | Chr1:66409125-66409144 | MsG0180003672.01.T01:intron | 15.0% |
| !! | AAATGAAATTGTCTGTTAAA+TGG | + | Chr1:66409403-66409422 | MsG0180003672.01.T01:CDS | 20.0% |
| !! | AATGAAATTGTCTGTTAAAT+GGG | + | Chr1:66409404-66409423 | MsG0180003672.01.T01:CDS | 20.0% |
| !! | TAAGAAATGTAGTTTATGTT+TGG | + | Chr1:66408692-66408711 | MsG0180003672.01.T01:intron | 20.0% |
| !!! | ACTTTATTTTAAATGGGAAA+GGG | + | Chr1:66409131-66409150 | MsG0180003672.01.T01:intron | 20.0% |
| !!! | AGTAAACTTGAAATTACTTT+TGG | + | Chr1:66408345-66408364 | MsG0180003672.01.T01:CDS | 20.0% |
| ! | AAATGTAGTTTATGTTTGGA+CGG | + | Chr1:66408696-66408715 | MsG0180003672.01.T01:intron | 25.0% |
| ! | AAGTGTATGTTTGTATCATA+TGG | - | Chr1:66408876-66408895 | None:intergenic | 25.0% |
| ! | GTAGTAGTAACTGTAATATT+GGG | + | Chr1:66408430-66408449 | MsG0180003672.01.T01:CDS | 25.0% |
| ! | TAGTAGTAACTGTAATATTG+GGG | + | Chr1:66408431-66408450 | MsG0180003672.01.T01:CDS | 25.0% |
| !! | AGTGTATGTTTTGTATCATA+TGG | - | Chr1:66409114-66409133 | None:intergenic | 25.0% |
| !! | TATGTTTTGTATCATATGGA+GGG | - | Chr1:66409110-66409129 | None:intergenic | 25.0% |
| !!! | AAACTTGAAATTACTTTTGG+TGG | + | Chr1:66408348-66408367 | MsG0180003672.01.T01:CDS | 25.0% |
| !!! | AACTTGAAATTACTTTTGGT+GGG | + | Chr1:66408349-66408368 | MsG0180003672.01.T01:CDS | 25.0% |
| !!! | ACATACACTTTATTTTGAAG+TGG | + | Chr1:66408886-66408905 | MsG0180003672.01.T01:intron | 25.0% |
| !!! | CACTTTATTTTAAATGGGAA+AGG | + | Chr1:66409130-66409149 | MsG0180003672.01.T01:intron | 25.0% |
| ATCAAGAAGAGTGAAAAGAA+AGG | + | Chr1:66409501-66409520 | MsG0180003672.01.T01:CDS | 30.0% | |
| CTAAGAAACAACATAAATCC+CGG | + | Chr1:66409478-66409497 | MsG0180003672.01.T01:CDS | 30.0% | |
| GGTAGTAGTAACTGTAATAT+TGG | + | Chr1:66408429-66408448 | MsG0180003672.01.T01:CDS | 30.0% | |
| GTATGTTTGTATCATATGGT+GGG | - | Chr1:66408872-66408891 | None:intergenic | 30.0% | |
| TGAACACAATTAGAACTTAC+CGG | - | Chr1:66408639-66408658 | None:intergenic | 30.0% | |
| TGATATAGGAGACAAAATCA+AGG | - | Chr1:66409749-66409768 | None:intergenic | 30.0% | |
| TGTATGTTTGTATCATATGG+TGG | - | Chr1:66408873-66408892 | None:intergenic | 30.0% | |
| ! | GTATGTTTTGTATCATATGG+AGG | - | Chr1:66409111-66409130 | None:intergenic | 30.0% |
| ! | TTATGCTAGATGCATTGTTT+TGG | + | Chr1:66409014-66409033 | MsG0180003672.01.T01:intron | 30.0% |
| ! | TTTTCTCTGTATTATACCAC+AGG | + | Chr1:66409323-66409342 | MsG0180003672.01.T01:intron | 30.0% |
| !! | ATGTTGTTTCTTAGTTCTCA+CGG | - | Chr1:66409472-66409491 | None:intergenic | 30.0% |
| !! | GAAAGAACTTTTGACTCATT+CGG | + | Chr1:66408908-66408927 | MsG0180003672.01.T01:intron | 30.0% |
| !!! | ATAGTTTTGTCGAGCATAAT+TGG | + | Chr1:66409264-66409283 | MsG0180003672.01.T01:intron | 30.0% |
| AAAACTTGTATCTGCCATGA+AGG | + | Chr1:66409353-66409372 | MsG0180003672.01.T01:CDS | 35.0% | |
| AAACTTGTATCTGCCATGAA+GGG | + | Chr1:66409354-66409373 | MsG0180003672.01.T01:CDS | 35.0% | |
| AACCTTTCCTTATCCTGATA+CGG | + | Chr1:66408524-66408543 | MsG0180003672.01.T01:CDS | 35.0% | |
| AAGAAACCACACTAAAAGTG+AGG | + | Chr1:66408484-66408503 | MsG0180003672.01.T01:CDS | 35.0% | |
| AGGTGTAAAGAAAAGTCAGA+AGG | + | Chr1:66409521-66409540 | MsG0180003672.01.T01:CDS | 35.0% | |
| AGTAACTGTAATATTGGGGA+GGG | + | Chr1:66408435-66408454 | MsG0180003672.01.T01:CDS | 35.0% | |
| ATGCAGCTTTCACATAATCA+CGG | + | Chr1:66409061-66409080 | MsG0180003672.01.T01:intron | 35.0% | |
| CAAAGGATTTGATGCTTCAA+TGG | + | Chr1:66409614-66409633 | MsG0180003672.01.T01:CDS | 35.0% | |
| CTCATTCAACAAATAGAAGC+TGG | + | Chr1:66409160-66409179 | MsG0180003672.01.T01:intron | 35.0% | |
| GAAATTACTGTGAACAACTG+TGG | + | Chr1:66408775-66408794 | MsG0180003672.01.T01:intron | 35.0% | |
| GGTGTAAAGAAAAGTCAGAA+GGG | + | Chr1:66409522-66409541 | MsG0180003672.01.T01:CDS | 35.0% | |
| TAGTAACTGTAATATTGGGG+AGG | + | Chr1:66408434-66408453 | MsG0180003672.01.T01:CDS | 35.0% | |
| TTAAATAATCTCGACGTTGC+TGG | + | Chr1:66409639-66409658 | MsG0180003672.01.T01:CDS | 35.0% | |
| TTGTAGCTTTCACACAATCA+CGG | + | Chr1:66408823-66408842 | MsG0180003672.01.T01:intron | 35.0% | |
| ! | ACATGTATCTGATGATGATG+AGG | + | Chr1:66408404-66408423 | MsG0180003672.01.T01:CDS | 35.0% |
| ! | CTATAGCTTTTGCAAAACCA+CGG | - | Chr1:66408748-66408767 | None:intergenic | 35.0% |
| ! | TCTTTTCACTCTTCTTGATC+CGG | - | Chr1:66409500-66409519 | None:intergenic | 35.0% |
| !!! | TTGTTTTGGTCGAGCATAAT+TGG | + | Chr1:66409028-66409047 | MsG0180003672.01.T01:intron | 35.0% |
| !!! | TTTTTGAGATGCTAGTTGCA+TGG | - | Chr1:66409677-66409696 | None:intergenic | 35.0% |
| AATCCTTTGCCACAAGATTC+TGG | - | Chr1:66409603-66409622 | None:intergenic | 40.0% | |
| ACGGTTGCCCATAATGATTT+CGG | - | Chr1:66408729-66408748 | None:intergenic | 40.0% | |
| ACTAAAAGTGAGGAGCTTGA+AGG | + | Chr1:66408494-66408513 | MsG0180003672.01.T01:CDS | 40.0% | |
| AGAAGCAGTATCGCTATAGA+TGG | + | Chr1:66409577-66409596 | MsG0180003672.01.T01:CDS | 40.0% | |
| AGAAGGGCAGCTATTCTAAA+GGG | + | Chr1:66409538-66409557 | MsG0180003672.01.T01:CDS | 40.0% | |
| GTAGTTTATGTTTGGACGGT+GGG | + | Chr1:66408700-66408719 | MsG0180003672.01.T01:intron | 40.0% | |
| TATAGATGGCCAGAATCTTG+TGG | + | Chr1:66409591-66409610 | MsG0180003672.01.T01:CDS | 40.0% | |
| TGGGTTGCCGAAATCATTAT+GGG | + | Chr1:66408719-66408738 | MsG0180003672.01.T01:intron | 40.0% | |
| TGTAGTTTATGTTTGGACGG+TGG | + | Chr1:66408699-66408718 | MsG0180003672.01.T01:intron | 40.0% | |
| ! | ATGGCAGATACAAGTTTTGC+AGG | - | Chr1:66409351-66409370 | None:intergenic | 40.0% |
| ! | CTTTTCACTCTTCTTGATCC+GGG | - | Chr1:66409499-66409518 | None:intergenic | 40.0% |
| ! | GTATCTGATGATGATGAGGA+TGG | + | Chr1:66408408-66408427 | MsG0180003672.01.T01:CDS | 40.0% |
| AACTACTTTCCACCCCCATT+GGG | - | Chr1:66409190-66409209 | None:intergenic | 45.0% | |
| ACGGTATGTGACGACAATGT+TGG | - | Chr1:66409453-66409472 | None:intergenic | 45.0% | |
| ACGGTTGCTAGCCATGATTT+CGG | + | Chr1:66408842-66408861 | MsG0180003672.01.T01:intron | 45.0% | |
| CACCGTATCAGGATAAGGAA+AGG | - | Chr1:66408529-66408548 | None:intergenic | 45.0% | |
| CAGAAGGGCAGCTATTCTAA+AGG | + | Chr1:66409537-66409556 | MsG0180003672.01.T01:CDS | 45.0% | |
| CTCTACACAACTTCCAGACT+CGG | + | Chr1:66408605-66408624 | MsG0180003672.01.T01:CDS | 45.0% | |
| GAAATCATTATGGGCAACCG+TGG | + | Chr1:66408728-66408747 | MsG0180003672.01.T01:intron | 45.0% | |
| TCATTCGGCAGATAGAAAGC+TGG | + | Chr1:66408923-66408942 | MsG0180003672.01.T01:intron | 45.0% | |
| TCGTCATCAGAAGAGCTTGA+AGG | - | Chr1:66408555-66408574 | None:intergenic | 45.0% | |
| ! | GTGGGTTGCCGAAATCATTA+TGG | + | Chr1:66408718-66408737 | MsG0180003672.01.T01:intron | 45.0% |
| ! | TTCAAGCTCTTCTGATGACG+AGG | + | Chr1:66408554-66408573 | MsG0180003672.01.T01:CDS | 45.0% |
| !! | CAAGCTCCTCACTTTTAGTG+TGG | - | Chr1:66408493-66408512 | None:intergenic | 45.0% |
| !! | CATATGTGGTGGGTTTGAAC+AGG | + | Chr1:66408461-66408480 | MsG0180003672.01.T01:CDS | 45.0% |
| ACCGAAAGTCCTTGCCATGT+CGG | + | Chr1:66409705-66409724 | MsG0180003672.01.T01:CDS | 50.0% | |
| ACTACTTTCCACCCCCATTG+GGG | - | Chr1:66409189-66409208 | None:intergenic | 50.0% | |
| ACTCTCCTGCGAATGTTGTC+GGG | + | Chr1:66408310-66408329 | MsG0180003672.01.T01:CDS | 50.0% | |
| ATAGAAAGCTGGTCGCTCCA+AGG | + | Chr1:66408934-66408953 | MsG0180003672.01.T01:intron | 50.0% | |
| ATAGAAGCTGGTCACCCCAA+TGG | + | Chr1:66409172-66409191 | MsG0180003672.01.T01:intron | 50.0% | |
| ATAGCTTCTCCGACATGGCA+AGG | - | Chr1:66409717-66409736 | None:intergenic | 50.0% | |
| ATTGGGGAGGGACACATATG+TGG | + | Chr1:66408447-66408466 | MsG0180003672.01.T01:CDS | 50.0% | |
| CAACTACTTTCCACCCCCAT+TGG | - | Chr1:66409191-66409210 | None:intergenic | 50.0% | |
| CAATGGGGGTGGAAAGTAGT+TGG | + | Chr1:66409189-66409208 | MsG0180003672.01.T01:intron | 50.0% | |
| CACCGGATCATACACATCAG+GGG | - | Chr1:66409430-66409449 | None:intergenic | 50.0% | |
| CACTCTCCTGCGAATGTTGT+CGG | + | Chr1:66408309-66408328 | MsG0180003672.01.T01:CDS | 50.0% | |
| CTTGAAGGCAACACCGTATC+AGG | - | Chr1:66408540-66408559 | None:intergenic | 50.0% | |
| GCACCGGATCATACACATCA+GGG | - | Chr1:66409431-66409450 | None:intergenic | 50.0% | |
| GGCAACACCGTATCAGGATA+AGG | - | Chr1:66408534-66408553 | None:intergenic | 50.0% | |
| TAGAAAGCTGGTCGCTCCAA+GGG | + | Chr1:66408935-66408954 | MsG0180003672.01.T01:intron | 50.0% | |
| TAGAAGCTGGTCACCCCAAT+GGG | + | Chr1:66409173-66409192 | MsG0180003672.01.T01:intron | 50.0% | |
| TCCGACATGGCAAGGACTTT+CGG | - | Chr1:66409709-66409728 | None:intergenic | 50.0% | |
| TGCTCATAGCTTCTCCGACA+TGG | - | Chr1:66409722-66409741 | None:intergenic | 50.0% | |
| TGGCCAGAATCTTGTGGCAA+AGG | + | Chr1:66409597-66409616 | MsG0180003672.01.T01:CDS | 50.0% | |
| TGTGACGACAATGTTGGCAC+CGG | - | Chr1:66409447-66409466 | None:intergenic | 50.0% | |
| ! | AAGCTCTTCTGATGACGAGG+AGG | + | Chr1:66408557-66408576 | MsG0180003672.01.T01:CDS | 50.0% |
| ! | ACAAGTTTTGCAGGTGCCTG+TGG | - | Chr1:66409342-66409361 | None:intergenic | 50.0% |
| !! | TGGTGGGTTAGCCGAAATCA+TGG | - | Chr1:66408856-66408875 | None:intergenic | 50.0% |
| AGAAAGCTGGTCGCTCCAAG+GGG | + | Chr1:66408936-66408955 | MsG0180003672.01.T01:intron | 55.0% | |
| AGAAGCTGGTCACCCCAATG+GGG | + | Chr1:66409174-66409193 | MsG0180003672.01.T01:intron | 55.0% | |
| CAACTACTTTCCACCCCCCT+TGG | - | Chr1:66408954-66408973 | None:intergenic | 55.0% | |
| CAAGGGGGGTGGAAAGTAGT+TGG | + | Chr1:66408952-66408971 | MsG0180003672.01.T01:intron | 55.0% | |
| CGACAACATTCGCAGGAGAG+TGG | - | Chr1:66408311-66408330 | None:intergenic | 55.0% | |
| GCGATCCCAAGTGTTTCTCG+CGG | - | Chr1:66409383-66409402 | None:intergenic | 55.0% | |
| GGCCCCTGATGTGTATGATC+CGG | + | Chr1:66409425-66409444 | MsG0180003672.01.T01:CDS | 55.0% | |
| GGGAGGGACACATATGTGGT+GGG | + | Chr1:66408451-66408470 | MsG0180003672.01.T01:CDS | 55.0% | |
| GGTAGCCGCGAGAAACACTT+GGG | + | Chr1:66409375-66409394 | MsG0180003672.01.T01:CDS | 55.0% | |
| TGGCAAGGACTTTCGGTAGC+TGG | - | Chr1:66409702-66409721 | None:intergenic | 55.0% | |
| TTTCTCGCGGCTACCCTTCA+TGG | - | Chr1:66409370-66409389 | None:intergenic | 55.0% | |
| ! | GGCACCGGATCATACACATC+AGG | - | Chr1:66409432-66409451 | None:intergenic | 55.0% |
| ! | TCCAGACTCGGTTTCTCAGC+CGG | + | Chr1:66408617-66408636 | MsG0180003672.01.T01:CDS | 55.0% |
| ! | TCTGATGACGAGGAGGCTGA+TGG | + | Chr1:66408564-66408583 | MsG0180003672.01.T01:CDS | 55.0% |
| AAAGCTGGTCGCTCCAAGGG+GGG | + | Chr1:66408938-66408957 | MsG0180003672.01.T01:intron | 60.0% | |
| ACCGGCTGAGAAACCGAGTC+TGG | - | Chr1:66408621-66408640 | None:intergenic | 60.0% | |
| GAAAGCTGGTCGCTCCAAGG+GGG | + | Chr1:66408937-66408956 | MsG0180003672.01.T01:intron | 60.0% | |
| GAAGCTGGTCACCCCAATGG+GGG | + | Chr1:66409175-66409194 | MsG0180003672.01.T01:intron | 60.0% | |
| GGGGAGGGACACATATGTGG+TGG | + | Chr1:66408450-66408469 | MsG0180003672.01.T01:CDS | 60.0% | |
| GGGTAGCCGCGAGAAACACT+TGG | + | Chr1:66409374-66409393 | MsG0180003672.01.T01:CDS | 60.0% | |
| TCGCACCCGACAACATTCGC+AGG | - | Chr1:66408318-66408337 | None:intergenic | 60.0% | |
| GCTGGTCACCCCAATGGGGG+TGG | + | Chr1:66409178-66409197 | MsG0180003672.01.T01:intron | 70.0% | |
| GCTGGTCGCTCCAAGGGGGG+TGG | + | Chr1:66408941-66408960 | MsG0180003672.01.T01:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 66408300 | 66409779 | 66408300 | ID=MsG0180003672.01;Name=MsG0180003672.01 |
| Chr1 | mRNA | 66408300 | 66409779 | 66408300 | ID=MsG0180003672.01.T01;Parent=MsG0180003672.01;Name=MsG0180003672.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|2|0|257 |
| Chr1 | exon | 66408300 | 66408638 | 66408300 | ID=MsG0180003672.01.T01:exon:29877;Parent=MsG0180003672.01.T01 |
| Chr1 | exon | 66409345 | 66409779 | 66409345 | ID=MsG0180003672.01.T01:exon:29876;Parent=MsG0180003672.01.T01 |
| Chr1 | CDS | 66408300 | 66408638 | 66408300 | ID=MsG0180003672.01.T01:cds;Parent=MsG0180003672.01.T01 |
| Chr1 | CDS | 66409345 | 66409779 | 66409345 | ID=MsG0180003672.01.T01:cds;Parent=MsG0180003672.01.T01 |
| Gene Sequence |
| Protein sequence |
