AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003758.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003758.01.T01 MTR_1g069240 96.653 239 7 1 1 238 95 333 2.58e-167 465
MsG0180003758.01.T01 MTR_7g108590 32.400 250 148 3 2 230 195 444 3.94e-35 130
MsG0180003758.01.T01 MTR_7g108590 35.075 134 87 0 2 135 195 328 1.97e-19 86.3
MsG0180003758.01.T01 MTR_7g108590 35.075 134 87 0 2 135 195 328 3.37e-19 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003758.01.T01 AT4G28740 69.583 240 69 3 1 238 110 347 2.73e-119 344
MsG0180003758.01.T01 AT1G02910 28.452 239 150 2 13 230 213 451 4.81e-26 105
MsG0180003758.01.T01 AT1G02910 30.081 123 86 0 13 135 213 335 2.69e-12 65.9

Find 108 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGAGCCTCTTGTGCATTCT+TGG 0.158034 1:+67735756 None:intergenic
AATCTAATTCTTCTCAAATT+AGG 0.208211 1:-67736933 MsG0180003758.01.T01:intron
TCTCCTTAGTTGGATGATTA+TGG 0.247045 1:+67737254 None:intergenic
AGAAGAATTAGATTGTTTAT+TGG 0.275303 1:+67736942 None:intergenic
GGATGGAAATTTGCCTGCTT+TGG 0.289463 1:-67735533 MsG0180003758.01.T01:CDS
AGGGCTGAACTCCTTGTATA+AGG 0.300210 1:+67734788 None:intergenic
TGAGGTTCTATCTCCCTTTC+GGG 0.303519 1:-67735971 MsG0180003758.01.T01:five_prime_UTR
ATAGCAATCTCACAACTAAT+TGG 0.308590 1:-67735892 MsG0180003758.01.T01:CDS
CTGCCATAGTCTCTTCCTTC+TGG 0.310842 1:+67735468 None:intergenic
GTGAGGTTCTATCTCCCTTT+CGG 0.318617 1:-67735972 MsG0180003758.01.T01:five_prime_UTR
TAAAATCATATATTTAGTTT+AGG 0.319874 1:-67734685 MsG0180003758.01.T01:three_prime_UTR
ACCTTTCACAGAAAGTCTTT+TGG 0.320758 1:-67735587 MsG0180003758.01.T01:CDS
TGAGGAACTGAACATAAAAT+TGG 0.327285 1:+67737044 None:intergenic
GCCGAGACCCTTGAGAATTT+CGG 0.328655 1:+67735834 None:intergenic
AGTTTCACTTTCTTTGCATA+TGG 0.343844 1:-67737198 MsG0180003758.01.T01:five_prime_UTR
ACCATGACATTAACAACGTT+TGG 0.352424 1:-67737144 MsG0180003758.01.T01:five_prime_UTR
GAGATGATCCTTCAAGAGTA+TGG 0.355797 1:+67734830 None:intergenic
CTTTGTTGTCTCTAAAGTAT+AGG 0.356891 1:+67735779 None:intergenic
GACCACTCGGAGGTGATAAC+TGG 0.362239 1:+67735439 None:intergenic
ATTGGAGCAGTATCTTTGTT+TGG 0.363564 1:-67735805 MsG0180003758.01.T01:CDS
TATCTCCCTTTCGGGCAGTT+AGG 0.390845 1:-67735963 MsG0180003758.01.T01:five_prime_UTR
AAATTTCCATCCGTTACTAA+TGG 0.393889 1:+67735544 None:intergenic
CCAGTCCAGATTCCCTTTAC+CGG 0.394427 1:+67734894 None:intergenic
TGCACAATTACCGCCGGTAA+AGG 0.394914 1:-67734907 MsG0180003758.01.T01:CDS
CGCTTGGATGGTCGAGTTCG+TGG 0.397559 1:-67734966 MsG0180003758.01.T01:CDS
GGGCTGAACTCCTTGTATAA+GGG 0.402759 1:+67734789 None:intergenic
TACCGCCGGTAAAGGGAATC+TGG 0.408305 1:-67734899 MsG0180003758.01.T01:CDS
CCACCAGAAGGAAGAGACTA+TGG 0.419742 1:-67735471 MsG0180003758.01.T01:CDS
TTTGTTGCAAGTGCTTCTCT+CGG 0.428816 1:-67735922 MsG0180003758.01.T01:CDS
GCACAATTACCGCCGGTAAA+GGG 0.429086 1:-67734906 MsG0180003758.01.T01:CDS
AACTAATGAAACATTCACTT+TGG 0.432993 1:-67737173 MsG0180003758.01.T01:five_prime_UTR
ATGAAACATGGAGGTGGTGT+TGG 0.435397 1:+67737081 None:intergenic
TAGTGGGAACAGAAGATCTT+TGG 0.442205 1:+67736980 None:intergenic
GACTCGGTTATGAAGGATGC+TGG 0.449765 1:+67735625 None:intergenic
ATCTGGACTGGCCTACTAGA+TGG 0.452164 1:-67734882 MsG0180003758.01.T01:CDS
TCCGAAATTCTCAAGGGTCT+CGG 0.462525 1:-67735835 MsG0180003758.01.T01:CDS
TGAAACATGGAGGTGGTGTT+GGG 0.464979 1:+67737082 None:intergenic
CACACATCTATCTCCTTAGT+TGG 0.466055 1:+67737244 None:intergenic
GGAAGCAGAACAAACAATAG+TGG 0.475113 1:+67736963 None:intergenic
TCAGCTCTACAGCCAGGATA+AGG 0.479607 1:-67735996 MsG0180003758.01.T01:five_prime_UTR
TCCAAAAGACTTTCTGTGAA+AGG 0.484014 1:+67735586 None:intergenic
AGGTGTATCCTCTGAGTCTC+CGG 0.484946 1:-67735301 MsG0180003758.01.T01:CDS
CTTAAAAGACTCGGTTATGA+AGG 0.489119 1:+67735618 None:intergenic
TTGTTGCAAGTGCTTCTCTC+GGG 0.495810 1:-67735921 MsG0180003758.01.T01:CDS
ACGTTGTTAATGTCATGGTT+TGG 0.496411 1:+67737148 None:intergenic
TTTGATAGAATATGCACTGT+AGG 0.500953 1:+67734727 None:intergenic
TGTTCTTCAGCTCTACAGCC+AGG 0.501870 1:-67736002 MsG0180003758.01.T01:five_prime_UTR
GGTTATGAAGGATGCTGGGC+CGG 0.510643 1:+67735630 None:intergenic
ACCAAACGTTGTTAATGTCA+TGG 0.511914 1:+67737143 None:intergenic
CGAGTTCGTGGAAGTGGTGT+TGG 0.518858 1:-67734954 MsG0180003758.01.T01:CDS
GAGAATTTCGGAAACTTCTG+AGG 0.522492 1:+67735846 None:intergenic
TAGGTATCTATCTCTACGCT+TGG 0.524939 1:-67734982 MsG0180003758.01.T01:CDS
ATACCATAATCATCCAACTA+AGG 0.525161 1:-67737257 MsG0180003758.01.T01:five_prime_UTR
TCAGTCTCAAATTCCAAAGC+AGG 0.526917 1:+67735520 None:intergenic
TAGAACCTCACTCCTTATCC+TGG 0.528279 1:+67735984 None:intergenic
AAAATAAAAGAAATAAACCT+AGG 0.529090 1:+67734768 None:intergenic
AAGGGTCTCGGCATTGACAT+TGG 0.530691 1:-67735823 MsG0180003758.01.T01:CDS
GGAGATAGATGTGTGACCTC+AGG 0.532806 1:-67737236 MsG0180003758.01.T01:five_prime_UTR
GTTGTTCCATTAGTAACGGA+TGG 0.533720 1:-67735550 MsG0180003758.01.T01:CDS
GAACATCCTAACTGCCCGAA+AGG 0.535459 1:+67735957 None:intergenic
GGCCTACTAGATGGCATGGA+TGG 0.537031 1:-67734873 MsG0180003758.01.T01:CDS
AACATCCTAACTGCCCGAAA+GGG 0.537118 1:+67735958 None:intergenic
AGTTCCTCAAGACTCAGTTA+TGG 0.539436 1:-67737030 MsG0180003758.01.T01:five_prime_UTR
GATGGTCGAGTTCGTGGAAG+TGG 0.539978 1:-67734960 MsG0180003758.01.T01:CDS
GAAACTTCTGAGGCTCGTGA+TGG 0.541777 1:+67735856 None:intergenic
TGCCATCCATGCCATCTAGT+AGG 0.546029 1:+67734871 None:intergenic
CCAAGAATGCACAAGAGGCT+CGG 0.547108 1:-67735756 MsG0180003758.01.T01:CDS
CCATAGTCTCTTCCTTCTGG+TGG 0.547663 1:+67735471 None:intergenic
CCGGTAAAGGGAATCTGGAC+TGG 0.548399 1:-67734894 MsG0180003758.01.T01:CDS
TCTTGTTGTTCCATTAGTAA+CGG 0.550298 1:-67735554 MsG0180003758.01.T01:CDS
TTGATAGAATATGCACTGTA+GGG 0.557054 1:+67734728 None:intergenic
GACTGGCCTACTAGATGGCA+TGG 0.557924 1:-67734877 MsG0180003758.01.T01:CDS
CAAAGCCAAGAATGCACAAG+AGG 0.560157 1:-67735761 MsG0180003758.01.T01:CDS
GGCTGAACTCCTTGTATAAG+GGG 0.560264 1:+67734790 None:intergenic
GCTCGACTTGTAATATGTGC+CGG 0.560267 1:-67735649 MsG0180003758.01.T01:CDS
AAGGAAGAGACTATGGCAGC+TGG 0.561092 1:-67735464 MsG0180003758.01.T01:CDS
AGAAGTTTCCGAAATTCTCA+AGG 0.563263 1:-67735842 MsG0180003758.01.T01:CDS
TTCACTGCGCTTAAAAGACT+CGG 0.565546 1:+67735609 None:intergenic
TATCTATCTCTACGCTTGGA+TGG 0.570017 1:-67734978 MsG0180003758.01.T01:CDS
CGATGATTGTGGATGAAACA+TGG 0.572334 1:+67737069 None:intergenic
TATACAAGGAGTTCAGCCCT+AGG 0.577639 1:-67734785 MsG0180003758.01.T01:three_prime_UTR
GAAGCAGAACAAACAATAGT+GGG 0.578711 1:+67736964 None:intergenic
TAAAATTGGTACGATGATTG+TGG 0.584880 1:+67737058 None:intergenic
GTGGTGTTGGTTATCCACCT+TGG 0.585801 1:-67734941 MsG0180003758.01.T01:CDS
CAAAGCAACTTGCCACCAGA+AGG 0.586550 1:-67735483 MsG0180003758.01.T01:CDS
ATTACTGTTAACTCATTGAG+AGG 0.589948 1:-67735676 MsG0180003758.01.T01:CDS
ACTCGGTTATGAAGGATGCT+GGG 0.605181 1:+67735626 None:intergenic
AGAGGCTCGGCTCTCAAGAG+AGG 0.606803 1:-67735743 MsG0180003758.01.T01:CDS
AAATAAAAGAAATAAACCTA+GGG 0.617898 1:+67734769 None:intergenic
GAAGTTTCCGAAATTCTCAA+GGG 0.624267 1:-67735841 MsG0180003758.01.T01:CDS
GTCCAGATTCCCTTTACCGG+CGG 0.627179 1:+67734897 None:intergenic
AGAAGCACTTGCAACAAAAG+CGG 0.630503 1:+67735927 None:intergenic
TGAGACTGAAGAGACTGATG+AGG 0.632957 1:-67735506 MsG0180003758.01.T01:CDS
GAGGTGGTGTTGGGAGAGTG+AGG 0.635330 1:+67737091 None:intergenic
TTTCGTTGCACAATTACCGC+CGG 0.637674 1:-67734913 MsG0180003758.01.T01:CDS
TACTTACACCGGAGACTCAG+AGG 0.639799 1:+67735293 None:intergenic
ATAGACATACTCGGACCACT+CGG 0.641066 1:+67735426 None:intergenic
TTGTGGATGAAACATGGAGG+TGG 0.644703 1:+67737075 None:intergenic
TACAGCCAGGATAAGGAGTG+AGG 0.659492 1:-67735989 MsG0180003758.01.T01:five_prime_UTR
TGTGCAACGAAAGCATTCCA+AGG 0.663502 1:+67734924 None:intergenic
GCTGAACTCCTTGTATAAGG+GGG 0.687173 1:+67734791 None:intergenic
GACATACTCGGACCACTCGG+AGG 0.696435 1:+67735429 None:intergenic
TGAACTAACTGATCATCCTG+AGG 0.696649 1:+67737220 None:intergenic
CTGTAGGGAAACAAAACCAG+AGG 0.697117 1:+67734743 None:intergenic
GTGACCATAACTGAGTCTTG+AGG 0.719771 1:+67737026 None:intergenic
CTCCAGTTATCACCTCCGAG+TGG 0.727203 1:-67735441 MsG0180003758.01.T01:CDS
GCAACGAAAGCATTCCAAGG+TGG 0.729632 1:+67734927 None:intergenic
TGATTGTGGATGAAACATGG+AGG 0.830631 1:+67737072 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATCATATATTTAGTTT+AGG - Chr1:67737226-67737245 MsG0180003758.01.T01:five_prime_UTR 10.0%
!! AAAATAAAAGAAATAAACCT+AGG + Chr1:67737146-67737165 None:intergenic 15.0%
!! AAATAAAAGAAATAAACCTA+GGG + Chr1:67737145-67737164 None:intergenic 15.0%
!!! ACTAAAATTTAGTTGATTTT+TGG + Chr1:67735339-67735358 None:intergenic 15.0%
!!! ATTTTCTATTATTCAAACTT+AGG + Chr1:67736772-67736791 None:intergenic 15.0%
!! AATCTAATTCTTCTCAAATT+AGG - Chr1:67734978-67734997 MsG0180003758.01.T01:CDS 20.0%
!! AGAAGAATTAGATTGTTTAT+TGG + Chr1:67734972-67734991 None:intergenic 20.0%
!! GAGGAAAAAATTAAAACAAT+TGG + Chr1:67736549-67736568 None:intergenic 20.0%
!!! AAAATTTAGTTGATTTTTGG+TGG + Chr1:67735336-67735355 None:intergenic 20.0%
!!! ATTTTTCACAAAACAAAAAG+AGG + Chr1:67735018-67735037 None:intergenic 20.0%
!!! TATAGCTTATTTTTTGTTGT+GGG - Chr1:67737278-67737297 MsG0180003758.01.T01:five_prime_UTR 20.0%
!!! TATCTGTTTTCTTTTAAACA+GGG - Chr1:67736880-67736899 MsG0180003758.01.T01:intron 20.0%
!!! TTAACATTTTAGCACTAATA+TGG + Chr1:67736648-67736667 None:intergenic 20.0%
!!! TTGAGGTAATTGTTTTAATA+TGG - Chr1:67735088-67735107 MsG0180003758.01.T01:intron 20.0%
! AAAGATATGAAAATCGCAAA+CGG - Chr1:67735588-67735607 MsG0180003758.01.T01:CDS 25.0%
! AACTAATGAAACATTCACTT+TGG - Chr1:67734738-67734757 MsG0180003758.01.T01:three_prime_UTR 25.0%
! AAGAAAACAGATACGAAAAA+CGG + Chr1:67736873-67736892 None:intergenic 25.0%
! AGTGCAAATAATGTTATGTA+TGG + Chr1:67735236-67735255 None:intergenic 25.0%
! GTTAGATGAACAAAAAAAGA+TGG - Chr1:67736586-67736605 MsG0180003758.01.T01:intron 25.0%
! TTCTAACAATTTCAATGTGT+AGG - Chr1:67736910-67736929 MsG0180003758.01.T01:intron 25.0%
!! ATCTGTTTTCTTTTAAACAG+GGG - Chr1:67736881-67736900 MsG0180003758.01.T01:intron 25.0%
!! GTATCTGTTTTCTTTTAAAC+AGG - Chr1:67736879-67736898 MsG0180003758.01.T01:intron 25.0%
!! TGTTTTGTGAAAAATGCTTT+TGG - Chr1:67735023-67735042 MsG0180003758.01.T01:intron 25.0%
!! TTTATATCTGCAATTTTGCT+TGG - Chr1:67735713-67735732 MsG0180003758.01.T01:CDS 25.0%
!!! AGAAGCATTGTTTTTTTCAT+TGG - Chr1:67735451-67735470 MsG0180003758.01.T01:CDS 25.0%
!!! ATTTCTTTTATTTTTGCCTC+TGG - Chr1:67737152-67737171 MsG0180003758.01.T01:five_prime_UTR 25.0%
!!! CATGTTTTAGATTTAGTTTG+TGG - Chr1:67735503-67735522 MsG0180003758.01.T01:CDS 25.0%
!!! GTATAGCTTATTTTTTGTTG+TGG - Chr1:67737277-67737296 MsG0180003758.01.T01:five_prime_UTR 25.0%
AAAGAAGCTTTGCATAAAGA+GGG + Chr1:67735834-67735853 None:intergenic 30.0%
AAATTTCCATCCGTTACTAA+TGG + Chr1:67736370-67736389 None:intergenic 30.0%
AATATGGATAGTACTTACAC+CGG + Chr1:67736632-67736651 None:intergenic 30.0%
AGTTTCACTTTCTTTGCATA+TGG - Chr1:67734713-67734732 MsG0180003758.01.T01:three_prime_UTR 30.0%
ATACCATAATCATCCAACTA+AGG - Chr1:67734654-67734673 MsG0180003758.01.T01:three_prime_UTR 30.0%
ATAGCAATCTCACAACTAAT+TGG - Chr1:67736019-67736038 MsG0180003758.01.T01:five_prime_UTR 30.0%
ATTACTGTTAACTCATTGAG+AGG - Chr1:67736235-67736254 MsG0180003758.01.T01:intron 30.0%
CTAGAGTAGCATTCAATTAA+TGG - Chr1:67735310-67735329 MsG0180003758.01.T01:CDS 30.0%
GAATACACAAGATTTGACAA+CGG + Chr1:67736843-67736862 None:intergenic 30.0%
GGTAACACATAAAATGTAGT+AGG + Chr1:67735381-67735400 None:intergenic 30.0%
TAAAATTGGTACGATGATTG+TGG + Chr1:67734856-67734875 None:intergenic 30.0%
TGAGGAACTGAACATAAAAT+TGG + Chr1:67734870-67734889 None:intergenic 30.0%
TTGATAGAATATGCACTGTA+GGG + Chr1:67737186-67737205 None:intergenic 30.0%
TTTGATAGAATATGCACTGT+AGG + Chr1:67737187-67737206 None:intergenic 30.0%
! ATCTAAAACATGTACACCAA+TGG + Chr1:67735495-67735514 None:intergenic 30.0%
! CTGCATTCATTTGATTTCAA+AGG + Chr1:67735780-67735799 None:intergenic 30.0%
! TTTTATCAGAATTCGAACCT+CGG + Chr1:67735154-67735173 None:intergenic 30.0%
!! CTTTGTTGTCTCTAAAGTAT+AGG + Chr1:67736135-67736154 None:intergenic 30.0%
!! TCTTGTTGTTCCATTAGTAA+CGG - Chr1:67736357-67736376 MsG0180003758.01.T01:intron 30.0%
!!! TTTTCCTCGTCTTGTTTAAT+AGG - Chr1:67736561-67736580 MsG0180003758.01.T01:intron 30.0%
AAGAAGCTTTGCATAAAGAG+GGG + Chr1:67735833-67735852 None:intergenic 35.0%
ACCAAACGTTGTTAATGTCA+TGG + Chr1:67734771-67734790 None:intergenic 35.0%
ACCATGACATTAACAACGTT+TGG - Chr1:67734767-67734786 MsG0180003758.01.T01:three_prime_UTR 35.0%
ACGTTGTTAATGTCATGGTT+TGG + Chr1:67734766-67734785 None:intergenic 35.0%
AGAAGTTTCCGAAATTCTCA+AGG - Chr1:67736069-67736088 MsG0180003758.01.T01:intron 35.0%
AGACATGAGAACCATAAGAA+GGG + Chr1:67735407-67735426 None:intergenic 35.0%
ATTGGAGCAGTATCTTTGTT+TGG - Chr1:67736106-67736125 MsG0180003758.01.T01:intron 35.0%
GAAAGAAGCTTTGCATAAAG+AGG + Chr1:67735835-67735854 None:intergenic 35.0%
GAAGCAGAACAAACAATAGT+GGG + Chr1:67734950-67734969 None:intergenic 35.0%
GAAGTTTCCGAAATTCTCAA+GGG - Chr1:67736070-67736089 MsG0180003758.01.T01:intron 35.0%
GATGAACAAAAAAAGATGGC+AGG - Chr1:67736590-67736609 MsG0180003758.01.T01:intron 35.0%
TAACACACGGTATTTGATCA+CGG - Chr1:67735612-67735631 MsG0180003758.01.T01:CDS 35.0%
TAATATGGTTCCATTGACGA+GGG - Chr1:67735103-67735122 MsG0180003758.01.T01:intron 35.0%
TCCAAAAGACTTTCTGTGAA+AGG + Chr1:67736328-67736347 None:intergenic 35.0%
TCTCCTTAGTTGGATGATTA+TGG + Chr1:67734660-67734679 None:intergenic 35.0%
TGTGTTGTCATAGACATACT+CGG + Chr1:67736497-67736516 None:intergenic 35.0%
TTAATATGGTTCCATTGACG+AGG - Chr1:67735102-67735121 MsG0180003758.01.T01:intron 35.0%
TTTGTTACACTGAACTGTTG+AGG - Chr1:67735071-67735090 MsG0180003758.01.T01:intron 35.0%
! ACCTTTCACAGAAAGTCTTT+TGG - Chr1:67736324-67736343 MsG0180003758.01.T01:intron 35.0%
! CTTAAAAGACTCGGTTATGA+AGG + Chr1:67736296-67736315 None:intergenic 35.0%
! GTTCTTTTCCATACTCTTGA+AGG - Chr1:67737073-67737092 MsG0180003758.01.T01:five_prime_UTR 35.0%
AATCGCAAACGGATAACACA+CGG - Chr1:67735599-67735618 MsG0180003758.01.T01:CDS 40.0%
ACCACCTATTAAACAAGACG+AGG + Chr1:67736568-67736587 None:intergenic 40.0%
AGTTCCTCAAGACTCAGTTA+TGG - Chr1:67734881-67734900 MsG0180003758.01.T01:CDS 40.0%
ATACTTCTCCCCCTTATACA+AGG - Chr1:67737112-67737131 MsG0180003758.01.T01:five_prime_UTR 40.0%
CACACATCTATCTCCTTAGT+TGG + Chr1:67734670-67734689 None:intergenic 40.0%
CAGACATGAGAACCATAAGA+AGG + Chr1:67735408-67735427 None:intergenic 40.0%
CCAATGGTAAGAGAACAAGA+TGG + Chr1:67735479-67735498 None:intergenic 40.0%
CCATCTTGTTCTCTTACCAT+TGG - Chr1:67735476-67735495 MsG0180003758.01.T01:CDS 40.0%
CGATGATTGTGGATGAAACA+TGG + Chr1:67734845-67734864 None:intergenic 40.0%
CTTCTTATGGTTCTCATGTC+TGG - Chr1:67735406-67735425 MsG0180003758.01.T01:intron 40.0%
GAGAATTTCGGAAACTTCTG+AGG + Chr1:67736068-67736087 None:intergenic 40.0%
GAGATGATCCTTCAAGAGTA+TGG + Chr1:67737084-67737103 None:intergenic 40.0%
GGAAGCAGAACAAACAATAG+TGG + Chr1:67734951-67734970 None:intergenic 40.0%
GGATAGCTCAATTGGTTGAA+GGG - Chr1:67735128-67735147 MsG0180003758.01.T01:intron 40.0%
GTCTGGCAAAGAATGAGATT+AGG - Chr1:67735423-67735442 MsG0180003758.01.T01:intron 40.0%
TAGGTATCTATCTCTACGCT+TGG - Chr1:67736929-67736948 MsG0180003758.01.T01:intron 40.0%
TAGTGGGAACAGAAGATCTT+TGG + Chr1:67734934-67734953 None:intergenic 40.0%
TATCTATCTCTACGCTTGGA+TGG - Chr1:67736933-67736952 MsG0180003758.01.T01:intron 40.0%
TCAGTCTCAAATTCCAAAGC+AGG + Chr1:67736394-67736413 None:intergenic 40.0%
TGAACTAACTGATCATCCTG+AGG + Chr1:67734694-67734713 None:intergenic 40.0%
TGATTGTGGATGAAACATGG+AGG + Chr1:67734842-67734861 None:intergenic 40.0%
TGGATAGCTCAATTGGTTGA+AGG - Chr1:67735127-67735146 MsG0180003758.01.T01:intron 40.0%
TTCACTGCGCTTAAAAGACT+CGG + Chr1:67736305-67736324 None:intergenic 40.0%
TTTGTTGCAAGTGCTTCTCT+CGG - Chr1:67735989-67736008 MsG0180003758.01.T01:five_prime_UTR 40.0%
! ACAGAAAGTCTTTTGGACAG+AGG - Chr1:67736331-67736350 MsG0180003758.01.T01:intron 40.0%
! GTTGTTCCATTAGTAACGGA+TGG - Chr1:67736361-67736380 MsG0180003758.01.T01:intron 40.0%
! TTCCCTTCCTTTTCTGCTTT+TGG - Chr1:67735743-67735762 MsG0180003758.01.T01:CDS 40.0%
!! AGAAGCACTTGCAACAAAAG+CGG + Chr1:67735987-67736006 None:intergenic 40.0%
!! TCCCTTCCTTTTCTGCTTTT+GGG - Chr1:67735744-67735763 MsG0180003758.01.T01:CDS 40.0%
!! TCCTCGTCTTGTTTAATAGG+TGG - Chr1:67736564-67736583 MsG0180003758.01.T01:intron 40.0%
AACATCCTAACTGCCCGAAA+GGG + Chr1:67735956-67735975 None:intergenic 45.0%
ACGGTATTTGATCACGGAGT+TGG - Chr1:67735618-67735637 MsG0180003758.01.T01:CDS 45.0%
ACTCGGTTATGAAGGATGCT+GGG + Chr1:67736288-67736307 None:intergenic 45.0%
AGGGCTGAACTCCTTGTATA+AGG + Chr1:67737126-67737145 None:intergenic 45.0%
ATAGACATACTCGGACCACT+CGG + Chr1:67736488-67736507 None:intergenic 45.0%
ATGAAACATGGAGGTGGTGT+TGG + Chr1:67734833-67734852 None:intergenic 45.0%
CAAAGCCAAGAATGCACAAG+AGG - Chr1:67736150-67736169 MsG0180003758.01.T01:intron 45.0%
CCCCAAAAGCAGAAAAGGAA+GGG + Chr1:67735748-67735767 None:intergenic 45.0%
CGGTATTTGATCACGGAGTT+GGG - Chr1:67735619-67735638 MsG0180003758.01.T01:CDS 45.0%
CTGTAGGGAAACAAAACCAG+AGG + Chr1:67737171-67737190 None:intergenic 45.0%
CTTTGCCCCAAAAGCAGAAA+AGG + Chr1:67735753-67735772 None:intergenic 45.0%
GCTGAACTCCTTGTATAAGG+GGG + Chr1:67737123-67737142 None:intergenic 45.0%
GGATGGAAATTTGCCTGCTT+TGG - Chr1:67736378-67736397 MsG0180003758.01.T01:intron 45.0%
GGCTGAACTCCTTGTATAAG+GGG + Chr1:67737124-67737143 None:intergenic 45.0%
GGGCTGAACTCCTTGTATAA+GGG + Chr1:67737125-67737144 None:intergenic 45.0%
GTGACCATAACTGAGTCTTG+AGG + Chr1:67734888-67734907 None:intergenic 45.0%
GTGAGGTTCTATCTCCCTTT+CGG - Chr1:67735939-67735958 MsG0180003758.01.T01:CDS 45.0%
GTGTTACCTCACCCTTCTTA+TGG - Chr1:67735393-67735412 MsG0180003758.01.T01:intron 45.0%
TAGAACCTCACTCCTTATCC+TGG + Chr1:67735930-67735949 None:intergenic 45.0%
TATACAAGGAGTTCAGCCCT+AGG - Chr1:67737126-67737145 MsG0180003758.01.T01:five_prime_UTR 45.0%
TCCGAAATTCTCAAGGGTCT+CGG - Chr1:67736076-67736095 MsG0180003758.01.T01:intron 45.0%
TGAAACATGGAGGTGGTGTT+GGG + Chr1:67734832-67734851 None:intergenic 45.0%
TGAGAACCATAAGAAGGGTG+AGG + Chr1:67735402-67735421 None:intergenic 45.0%
TGAGACTGAAGAGACTGATG+AGG - Chr1:67736405-67736424 MsG0180003758.01.T01:intron 45.0%
TGAGGTTCTATCTCCCTTTC+GGG - Chr1:67735940-67735959 MsG0180003758.01.T01:CDS 45.0%
TTGTGGATGAAACATGGAGG+TGG + Chr1:67734839-67734858 None:intergenic 45.0%
TTGTTGCAAGTGCTTCTCTC+GGG - Chr1:67735990-67736009 MsG0180003758.01.T01:five_prime_UTR 45.0%
TTTCGTTGCACAATTACCGC+CGG - Chr1:67736998-67737017 MsG0180003758.01.T01:five_prime_UTR 45.0%
! GATTGATGAAGCATCACTGC+AGG + Chr1:67735873-67735892 None:intergenic 45.0%
! GCTCGACTTGTAATATGTGC+CGG - Chr1:67736262-67736281 MsG0180003758.01.T01:intron 45.0%
!! CCCTTCCTTTTCTGCTTTTG+GGG - Chr1:67735745-67735764 MsG0180003758.01.T01:CDS 45.0%
!! TGTGCAACGAAAGCATTCCA+AGG + Chr1:67736990-67737009 None:intergenic 45.0%
AAGGAAGAGACTATGGCAGC+TGG - Chr1:67736447-67736466 MsG0180003758.01.T01:intron 50.0%
AGCTATCCAACCCTCGTCAA+TGG + Chr1:67735116-67735135 None:intergenic 50.0%
AGGTGTATCCTCTGAGTCTC+CGG - Chr1:67736610-67736629 MsG0180003758.01.T01:intron 50.0%
ATGGTTCCATTGACGAGGGT+TGG - Chr1:67735107-67735126 MsG0180003758.01.T01:intron 50.0%
CAAAGCAACTTGCCACCAGA+AGG - Chr1:67736428-67736447 MsG0180003758.01.T01:intron 50.0%
CCAAGAATGCACAAGAGGCT+CGG - Chr1:67736155-67736174 MsG0180003758.01.T01:intron 50.0%
CCACCAGAAGGAAGAGACTA+TGG - Chr1:67736440-67736459 MsG0180003758.01.T01:intron 50.0%
CCAGTCCAGATTCCCTTTAC+CGG + Chr1:67737020-67737039 None:intergenic 50.0%
CCATAGTCTCTTCCTTCTGG+TGG + Chr1:67736443-67736462 None:intergenic 50.0%
CGAGGGTTGGATAGCTCAAT+TGG - Chr1:67735120-67735139 MsG0180003758.01.T01:intron 50.0%
CTGCCATAGTCTCTTCCTTC+TGG + Chr1:67736446-67736465 None:intergenic 50.0%
GAACATCCTAACTGCCCGAA+AGG + Chr1:67735957-67735976 None:intergenic 50.0%
GCACAATTACCGCCGGTAAA+GGG - Chr1:67737005-67737024 MsG0180003758.01.T01:five_prime_UTR 50.0%
GCCCCAAAAGCAGAAAAGGA+AGG + Chr1:67735749-67735768 None:intergenic 50.0%
GCCGAGACCCTTGAGAATTT+CGG + Chr1:67736080-67736099 None:intergenic 50.0%
GGAGATAGATGTGTGACCTC+AGG - Chr1:67734675-67734694 MsG0180003758.01.T01:three_prime_UTR 50.0%
TACAGCCAGGATAAGGAGTG+AGG - Chr1:67735922-67735941 MsG0180003758.01.T01:CDS 50.0%
TACTTACACCGGAGACTCAG+AGG + Chr1:67736621-67736640 None:intergenic 50.0%
TATCTCCCTTTCGGGCAGTT+AGG - Chr1:67735948-67735967 MsG0180003758.01.T01:exon 50.0%
TCAGCTCTACAGCCAGGATA+AGG - Chr1:67735915-67735934 MsG0180003758.01.T01:CDS 50.0%
TGCACAATTACCGCCGGTAA+AGG - Chr1:67737004-67737023 MsG0180003758.01.T01:five_prime_UTR 50.0%
TGCCATCCATGCCATCTAGT+AGG + Chr1:67737043-67737062 None:intergenic 50.0%
TGTGCTCAAATCTCCGACTG+CGG - Chr1:67735647-67735666 MsG0180003758.01.T01:CDS 50.0%
TGTTCTTCAGCTCTACAGCC+AGG - Chr1:67735909-67735928 MsG0180003758.01.T01:CDS 50.0%
! GACTCGGTTATGAAGGATGC+TGG + Chr1:67736289-67736308 None:intergenic 50.0%
!! AAGGGTCTCGGCATTGACAT+TGG - Chr1:67736088-67736107 MsG0180003758.01.T01:intron 50.0%
!! ATCTGGACTGGCCTACTAGA+TGG - Chr1:67737029-67737048 MsG0180003758.01.T01:five_prime_UTR 50.0%
!! GAAACTTCTGAGGCTCGTGA+TGG + Chr1:67736058-67736077 None:intergenic 50.0%
!! GCAACGAAAGCATTCCAAGG+TGG + Chr1:67736987-67737006 None:intergenic 50.0%
!! GTGGTGTTGGTTATCCACCT+TGG - Chr1:67736970-67736989 MsG0180003758.01.T01:five_prime_UTR 50.0%
CACTGCAGCCACTATGCAGT+CGG - Chr1:67736792-67736811 MsG0180003758.01.T01:intron 55.0%
CCGAGCCTCTTGTGCATTCT+TGG + Chr1:67736158-67736177 None:intergenic 55.0%
CCGGTAAAGGGAATCTGGAC+TGG - Chr1:67737017-67737036 MsG0180003758.01.T01:five_prime_UTR 55.0%
CGAGTTCGTGGAAGTGGTGT+TGG - Chr1:67736957-67736976 MsG0180003758.01.T01:five_prime_UTR 55.0%
CTCAATTGGTTGAAGGGCCG+AGG - Chr1:67735134-67735153 MsG0180003758.01.T01:intron 55.0%
CTCCAGTTATCACCTCCGAG+TGG - Chr1:67736470-67736489 MsG0180003758.01.T01:intron 55.0%
CTTCGTCTCCGACTGCATAG+TGG + Chr1:67736803-67736822 None:intergenic 55.0%
GACCACTCGGAGGTGATAAC+TGG + Chr1:67736475-67736494 None:intergenic 55.0%
GATGGTCGAGTTCGTGGAAG+TGG - Chr1:67736951-67736970 MsG0180003758.01.T01:five_prime_UTR 55.0%
GGCCTACTAGATGGCATGGA+TGG - Chr1:67737038-67737057 MsG0180003758.01.T01:five_prime_UTR 55.0%
GGTTATGAAGGATGCTGGGC+CGG + Chr1:67736284-67736303 None:intergenic 55.0%
GTCCAGATTCCCTTTACCGG+CGG + Chr1:67737017-67737036 None:intergenic 55.0%
GTCGGAGACGAAGACACAGT+TGG - Chr1:67736810-67736829 MsG0180003758.01.T01:intron 55.0%
TACCGCCGGTAAAGGGAATC+TGG - Chr1:67737012-67737031 MsG0180003758.01.T01:five_prime_UTR 55.0%
TCAAATCTCCGACTGCGGAG+CGG - Chr1:67735652-67735671 MsG0180003758.01.T01:CDS 55.0%
!! GACTGGCCTACTAGATGGCA+TGG - Chr1:67737034-67737053 MsG0180003758.01.T01:five_prime_UTR 55.0%
AGAGGCTCGGCTCTCAAGAG+AGG - Chr1:67736168-67736187 MsG0180003758.01.T01:intron 60.0%
CAAATCTCCGACTGCGGAGC+GGG - Chr1:67735653-67735672 MsG0180003758.01.T01:CDS 60.0%
CGCTTGGATGGTCGAGTTCG+TGG - Chr1:67736945-67736964 MsG0180003758.01.T01:five_prime_UTR 60.0%
GACATACTCGGACCACTCGG+AGG + Chr1:67736485-67736504 None:intergenic 60.0%
! GAGGTGGTGTTGGGAGAGTG+AGG + Chr1:67734823-67734842 None:intergenic 60.0%
TATGCAGCCCGCTCCGCAGT+CGG + Chr1:67735663-67735682 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 67734636 67737297 67734636 ID=MsG0180003758.01;Name=MsG0180003758.01
Chr1 mRNA 67734636 67737297 67734636 ID=MsG0180003758.01.T01;Parent=MsG0180003758.01;Name=MsG0180003758.01.T01;_AED=0.25;_eAED=0.25;_QI=458|1|1|1|0.66|0.5|4|227|238
Chr1 exon 67734636 67735001 67734636 ID=MsG0180003758.01.T01:exon:24157;Parent=MsG0180003758.01.T01
Chr1 exon 67735300 67735350 67735300 ID=MsG0180003758.01.T01:exon:24156;Parent=MsG0180003758.01.T01
Chr1 exon 67735436 67736056 67735436 ID=MsG0180003758.01.T01:exon:24155;Parent=MsG0180003758.01.T01
Chr1 exon 67736934 67737297 67736934 ID=MsG0180003758.01.T01:exon:24154;Parent=MsG0180003758.01.T01
Chr1 five_prime_UTR 67736934 67737297 67736934 ID=MsG0180003758.01.T01:five_prime_utr;Parent=MsG0180003758.01.T01
Chr1 five_prime_UTR 67735963 67736056 67735963 ID=MsG0180003758.01.T01:five_prime_utr;Parent=MsG0180003758.01.T01
Chr1 CDS 67735436 67735962 67735436 ID=MsG0180003758.01.T01:cds;Parent=MsG0180003758.01.T01
Chr1 CDS 67735300 67735350 67735300 ID=MsG0180003758.01.T01:cds;Parent=MsG0180003758.01.T01
Chr1 CDS 67734863 67735001 67734863 ID=MsG0180003758.01.T01:cds;Parent=MsG0180003758.01.T01
Chr1 three_prime_UTR 67734636 67734862 67734636 ID=MsG0180003758.01.T01:three_prime_utr;Parent=MsG0180003758.01.T01
Gene Sequence

>MsG0180003758.01.T01

ATGTTCTTTTACACCGCTTTTGTTGCAAGTGCTTCTCTCGGGACACTCATAGCAATCTCACAACTAATTGGTGCACTGTCTAATCCATCACGAGCCTCAGAAGTTTCCGAAATTCTCAAGGGTCTCGGCATTGACATTGGAGCAGTATCTTTGTTTGGTTTCCTATACTTTAGAGACAACAAAGCCAAGAATGCACAAGAGGCTCGGCTCTCAAGAGAGGAATTTTTGTCAAATCTTAAGCTACGTGTGAGCGAGAAGAAGATCATTACTGTTAACTCATTGAGAGGAATTGCTCGACTTGTAATATGTGCCGGCCCAGCATCCTTCATAACCGAGTCTTTTAAGCGCAGTGAACCTTTCACAGAAAGTCTTTTGGACAGAGGAGTTCTTGTTGTTCCATTAGTAACGGATGGAAATTTGCCTGCTTTGGAATTTGAGACTGAAGAGACTGATGAGGCAAAGCAACTTGCCACCAGAAGGAAGAGACTATGGCAGCTGGCTCCAGTTATCACCTCCGAGTGGTCCGAGTGGTTAGATGAACAAAAAAAGATGGCAGGTGTATCCTCTGAGTCTCCGGTGTATCTATCTCTACGCTTGGATGGTCGAGTTCGTGGAAGTGGTGTTGGTTATCCACCTTGGAATGCTTTCGTTGCACAATTACCGCCGGTAAAGGGAATCTGGACTGGCCTACTAGATGGCATGGATGGCAGAGTTTAG

Protein sequence

>MsG0180003758.01.T01

MFFYTAFVASASLGTLIAISQLIGALSNPSRASEVSEILKGLGIDIGAVSLFGFLYFRDNKAKNAQEARLSREEFLSNLKLRVSEKKIITVNSLRGIARLVICAGPASFITESFKRSEPFTESLLDRGVLVVPLVTDGNLPALEFETEETDEAKQLATRRKRLWQLAPVITSEWSEWLDEQKKMAGVSSESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWTGLLDGMDGRV*