AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000423.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000423.01.T01 MTR_1g016170 96.018 226 9 0 1 226 80 305 3.45e-159 442
MsG0180000423.01.T01 MTR_3g050550 81.915 94 17 0 18 111 1 94 9.53e-48 152
MsG0180000423.01.T01 MTR_3g050610 77.500 120 22 2 4 121 31 147 4.33e-45 147
MsG0180000423.01.T01 MTR_4g126350 44.954 109 39 4 29 137 128 215 9.50e-18 80.9
MsG0180000423.01.T01 MTR_2g038720 37.850 214 80 8 29 224 110 288 1.19e-16 77.4
MsG0180000423.01.T01 MTR_4g121110 62.500 48 18 0 105 152 27 74 4.99e-16 72.8
MsG0180000423.01.T01 MTR_7g112330 69.444 36 11 0 108 143 22 57 4.07e-13 64.3
MsG0180000423.01.T01 MTR_5g020230 57.692 52 19 1 96 144 107 158 2.92e-12 64.3
MsG0180000423.01.T01 MTR_1g094930 56.098 41 18 0 103 143 142 182 2.93e-11 61.6
MsG0180000423.01.T01 MTR_1g094930 56.098 41 18 0 103 143 237 277 4.84e-11 61.6
MsG0180000423.01.T01 MTR_8g077510 63.158 38 14 0 107 144 124 161 6.03e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000423.01.T01 AT5G56860 41.985 131 49 6 29 141 142 263 4.27e-20 88.2
MsG0180000423.01.T01 AT5G49300 66.667 45 15 0 104 148 32 76 2.73e-17 75.9
MsG0180000423.01.T01 AT4G26150 43.220 118 26 4 29 139 147 230 2.05e-16 77.4
MsG0180000423.01.T01 AT5G26930 66.667 42 14 0 104 145 22 63 3.81e-16 72.4
MsG0180000423.01.T01 AT3G06740 66.667 42 14 0 105 146 38 79 1.04e-14 69.3
MsG0180000423.01.T01 AT4G16141 68.293 41 13 0 105 145 34 74 1.67e-14 69.7
MsG0180000423.01.T01 AT3G16870 57.143 56 20 1 105 160 39 90 3.06e-14 68.9
MsG0180000423.01.T01 AT4G36620 58.333 48 20 0 104 151 71 118 1.79e-12 64.7
MsG0180000423.01.T01 AT2G18380 68.293 41 12 1 108 147 92 132 3.64e-12 63.5
MsG0180000423.01.T01 AT5G25830 55.556 45 20 0 99 143 210 254 1.61e-11 63.2
MsG0180000423.01.T01 AT3G50870 33.058 121 68 4 107 224 151 261 2.58e-11 62.4
MsG0180000423.01.T01 AT1G08010 57.778 45 18 1 99 143 212 255 4.96e-11 61.6
MsG0180000423.01.T01 AT1G08010 57.778 45 18 1 99 143 212 255 4.96e-11 61.6
MsG0180000423.01.T01 AT1G08010 57.778 45 18 1 99 143 212 255 4.96e-11 61.6
MsG0180000423.01.T01 AT2G45050 46.000 50 27 0 94 143 165 214 8.56e-11 60.5

Find 95 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTATATAATGATATAATT+TGG 0.206962 1:+5817014 MsG0180000423.01.T01:five_prime_UTR
CATTACACCTGCATTTATTA+TGG 0.219588 1:+5818827 MsG0180000423.01.T01:three_prime_UTR
TTGTTGTTTGGTCTCATTAT+TGG 0.223553 1:-5817541 None:intergenic
TAAATATAAGACGGTGGATT+TGG 0.249798 1:+5818636 MsG0180000423.01.T01:three_prime_UTR
CAGGAGAAATATTGAAGAAT+TGG 0.252897 1:-5816550 None:intergenic
CCTACCTTCTTTAACTTACT+TGG 0.262128 1:+5816587 MsG0180000423.01.T01:five_prime_UTR
CAATATTTCTCCTGTTAATC+AGG 0.271245 1:+5816559 MsG0180000423.01.T01:five_prime_UTR
CTCTTTGATTTGATTACTTT+AGG 0.275134 1:+5817279 MsG0180000423.01.T01:five_prime_UTR
TGACCTTGTAGTAAGGAATT+AGG 0.293931 1:-5816524 None:intergenic
ATGATGAAACCTAGTAATTA+TGG 0.301261 1:+5817607 MsG0180000423.01.T01:CDS
TTGTTACCGCTGTTACTACT+AGG 0.336848 1:-5817673 None:intergenic
TGTTACTACTAGGGCTTGTT+TGG 0.337618 1:-5817663 None:intergenic
CACTCCTCCATAGTGGGGTA+TGG 0.338618 1:-5817729 None:intergenic
GTCCAAGAAATCAAAATATA+AGG 0.340331 1:+5817635 MsG0180000423.01.T01:CDS
TTTGCAATGCTTGTGGAATC+AGG 0.357272 1:+5818343 MsG0180000423.01.T01:CDS
TTTAACTTACTTGGAGACTT+TGG 0.370727 1:+5816596 MsG0180000423.01.T01:five_prime_UTR
TCATCATAATCATAATCTAA+TGG 0.373491 1:-5818555 None:intergenic
ACAAAACAACACAATTACTA+TGG 0.377629 1:-5816892 None:intergenic
GTAGGAGTGTCCTGATTAAC+AGG 0.392974 1:-5816569 None:intergenic
CACAAATTTATCATCATCCT+TGG 0.395360 1:+5817408 MsG0180000423.01.T01:CDS
AGCAACGGCGGCACGACTTC+TGG 0.401059 1:+5818581 MsG0180000423.01.T01:CDS
TAGATTAATAATCAGATCAT+AGG 0.407914 1:-5817037 None:intergenic
TAATTACTAGGTTTCATCAT+TGG 0.409747 1:-5817604 None:intergenic
GTGGCTGCAATATTGTTGTT+TGG 0.421269 1:-5817553 None:intergenic
GGCTGAAGCTGCCAATGGTT+TGG 0.422143 1:+5818389 MsG0180000423.01.T01:CDS
TTCATCAAGTGAGTCAGTTA+TGG 0.431248 1:+5817363 MsG0180000423.01.T01:exon
TTGATGAATTATAGAGTTGT+TGG 0.441916 1:-5817348 None:intergenic
CGAATTACCTTTGGACCCAT+AGG 0.444966 1:-5817754 None:intergenic
GGACTAGTACCATAATTACT+AGG 0.449247 1:-5817616 None:intergenic
CCTGGCGGATTCAGAGAAAC+AGG 0.449276 1:-5816500 None:intergenic
ACTATGGAGGAGTGGCCCTA+TGG 0.450797 1:+5817738 MsG0180000423.01.T01:CDS
TGAGTCACGGGTCTGAGAAA+TGG 0.451328 1:+5817455 MsG0180000423.01.T01:CDS
CTTCTGGTGGATATATCTTC+TGG 0.451597 1:+5818597 MsG0180000423.01.T01:CDS
ACAGCGGTAACAACACCGTT+AGG 0.456940 1:+5817683 MsG0180000423.01.T01:CDS
CTATGGAGGAGTGGCCCTAT+GGG 0.464867 1:+5817739 MsG0180000423.01.T01:CDS
TTTATCATCATCCTTGGAGC+TGG 0.479939 1:+5817414 MsG0180000423.01.T01:CDS
CTTGATAGCTTTGTCAGTAG+TGG 0.482210 1:-5817572 None:intergenic
AGAAAATCATGATCATCATC+AGG 0.482702 1:+5816619 MsG0180000423.01.T01:five_prime_UTR
ACTCCTCCATAGTGGGGTAT+GGG 0.482841 1:-5817728 None:intergenic
GTACATCCCATACCCCACTA+TGG 0.488777 1:+5817722 MsG0180000423.01.T01:CDS
TTCTTAGTCTTGAATTGTGT+AGG 0.495944 1:-5818450 None:intergenic
AAAACATTATAGAAGAGAAA+AGG 0.505100 1:-5817082 None:intergenic
GCTGCTATCTTCCAGCTCCA+AGG 0.513483 1:-5817425 None:intergenic
TGGTCTCATTATTGGAGTTG+TGG 0.515285 1:-5817533 None:intergenic
AAGCTGGCATTTCATCATGA+TGG 0.517666 1:+5817307 MsG0180000423.01.T01:five_prime_UTR
TCAGGCAGAGAAAGGCAAGA+AGG 0.520139 1:+5818361 MsG0180000423.01.T01:CDS
ACAACTTCAACTACTTCTGC+TGG 0.524955 1:+5818495 MsG0180000423.01.T01:CDS
CAGGCAGAGAAAGGCAAGAA+GGG 0.526577 1:+5818362 MsG0180000423.01.T01:CDS
GAATTACCTTTGGACCCATA+GGG 0.528192 1:-5817753 None:intergenic
AGAACAGTGGACAGTACAAA+GGG 0.529130 1:-5816431 None:intergenic
GTCTCCAAGTAAGTTAAAGA+AGG 0.532121 1:-5816591 None:intergenic
CCTGTTTCTCTGAATCCGCC+AGG 0.532897 1:+5816500 MsG0180000423.01.T01:five_prime_UTR
ATTACTTTAGGATCATAAGC+TGG 0.534318 1:+5817291 MsG0180000423.01.T01:five_prime_UTR
TAATTCACCATAATAAATGC+AGG 0.537836 1:-5818834 None:intergenic
AGGGGATGTAGCCAAACCAT+TGG 0.539225 1:-5818400 None:intergenic
AGTGGACAGTACAAAGGGAT+AGG 0.541691 1:-5816426 None:intergenic
CAGTCACTTTGCAATGCTTG+TGG 0.543553 1:+5818336 MsG0180000423.01.T01:intron
CAGCGGTAACAACACCGTTA+GGG 0.546032 1:+5817684 MsG0180000423.01.T01:CDS
ACCATTGGCAGCTTCAGCCA+TGG 0.551217 1:-5818385 None:intergenic
TTGTGGAATCAGGCAGAGAA+AGG 0.551715 1:+5818353 MsG0180000423.01.T01:CDS
TAGGGCCACTCCTCCATAGT+GGG 0.558056 1:-5817735 None:intergenic
AAACAACACAATTACTATGG+TGG 0.559978 1:-5816889 None:intergenic
AATAATAACATATACATCAA+AGG 0.563046 1:-5817183 None:intergenic
TGTTACCGCTGTTACTACTA+GGG 0.563428 1:-5817672 None:intergenic
ATAGGGCCACTCCTCCATAG+TGG 0.566452 1:-5817736 None:intergenic
AAACAGGAGTCATGGATGGA+TGG 0.567139 1:-5816484 None:intergenic
ATTCAGAGAAACAGGAGTCA+TGG 0.570328 1:-5816492 None:intergenic
AGAAGTAGTTGAAGTTGTAG+AGG 0.579757 1:-5818490 None:intergenic
CCAAGTAAGTTAAAGAAGGT+AGG 0.580600 1:-5816587 None:intergenic
TGTGGGAATTTCACAGTGAG+AGG 0.583482 1:+5818668 MsG0180000423.01.T01:three_prime_UTR
TGTAACAAGAGAACGTTTGG+TGG 0.583792 1:+5816912 MsG0180000423.01.T01:five_prime_UTR
AGAGAAACAGGAGTCATGGA+TGG 0.584990 1:-5816488 None:intergenic
GAGAAAGGCAAGAAGGGCCA+TGG 0.585866 1:+5818368 MsG0180000423.01.T01:CDS
ATCTATATATTATTAAAACA+TGG 0.588861 1:-5816962 None:intergenic
GAGTGGCCCTATGGGTCCAA+AGG 0.590272 1:+5817747 MsG0180000423.01.T01:CDS
TACTGATCTTAAATATAAGA+CGG 0.602855 1:+5818627 MsG0180000423.01.T01:exon
GTGGACAGTACAAAGGGATA+GGG 0.603091 1:-5816425 None:intergenic
AAGAACAGTGGACAGTACAA+AGG 0.607846 1:-5816432 None:intergenic
TGGTTGTGCTGCATGTACAT+CGG 0.612073 1:-5818786 None:intergenic
GGTCCTAATTCCTTACTACA+AGG 0.613164 1:+5816521 MsG0180000423.01.T01:five_prime_UTR
TGATTATGATGAAGCAGCAA+CGG 0.614524 1:+5818566 MsG0180000423.01.T01:CDS
TGTAGTAAGGAATTAGGACC+TGG 0.615071 1:-5816518 None:intergenic
GCCATGGCTGAAGCTGCCAA+TGG 0.619219 1:+5818384 MsG0180000423.01.T01:CDS
AATGGATGTCTTCAAAGATG+AGG 0.632702 1:+5817473 MsG0180000423.01.T01:CDS
AACGGCGGCACGACTTCTGG+TGG 0.640817 1:+5818584 MsG0180000423.01.T01:CDS
ACAATCAGAACAAACCCTAA+CGG 0.645452 1:-5817698 None:intergenic
TGATCTTAAATATAAGACGG+TGG 0.660530 1:+5818630 MsG0180000423.01.T01:exon
ACAATTCAAGACTAAGAACA+AGG 0.668290 1:+5818455 MsG0180000423.01.T01:CDS
CATACCCCACTATGGAGGAG+TGG 0.671274 1:+5817730 MsG0180000423.01.T01:CDS
CATCCCATACCCCACTATGG+AGG 0.682705 1:+5817725 MsG0180000423.01.T01:CDS
TTATGATGAAGCAGCAACGG+CGG 0.694941 1:+5818569 MsG0180000423.01.T01:CDS
AGGGCCACTCCTCCATAGTG+GGG 0.711722 1:-5817734 None:intergenic
ACAAGCCCTAGTAGTAACAG+CGG 0.724459 1:+5817667 MsG0180000423.01.T01:CDS
AGTAAGGAATTAGGACCTGG+CGG 0.725626 1:-5816515 None:intergenic
AACACACAGAGAAAGAACAG+TGG 0.727775 1:-5816444 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCAAATTAAGTTTAATTA+TGG - Chr1:5818264-5818283 None:intergenic 10.0%
!! ATCTATATATTATTAAAACA+TGG - Chr1:5816965-5816984 None:intergenic 10.0%
!! ATTAATATTTATTGTTCATA+AGG + Chr1:5817917-5817936 MsG0180000423.01.T01:intron 10.0%
!! CATTAAAATATTTGTATTAA+AGG - Chr1:5818004-5818023 None:intergenic 10.0%
!! CTTTATATAATGATATAATT+TGG + Chr1:5817014-5817033 MsG0180000423.01.T01:five_prime_UTR 10.0%
!! TAATTAAAAAGATAAAATAG+AGG - Chr1:5818093-5818112 None:intergenic 10.0%
!! TTAATATTTATTGTTCATAA+GGG + Chr1:5817918-5817937 MsG0180000423.01.T01:intron 10.0%
!!! ATTAATATATTTTTTTTGTG+GGG - Chr1:5817903-5817922 None:intergenic 10.0%
!! AATAATAACATATACATCAA+AGG - Chr1:5817186-5817205 None:intergenic 15.0%
!!! ACATCTTTAAAAAAAACAAA+AGG - Chr1:5816843-5816862 None:intergenic 15.0%
!!! ATCTTTAAAAAAAACAAAAG+GGG - Chr1:5816841-5816860 None:intergenic 15.0%
!!! CATCTTTAAAAAAAACAAAA+GGG - Chr1:5816842-5816861 None:intergenic 15.0%
!!! GATATTAATAATTTTTGAGA+TGG - Chr1:5817878-5817897 None:intergenic 15.0%
!!! TGTTTTTGTAAGAATTTTTA+TGG - Chr1:5817970-5817989 None:intergenic 15.0%
!! AAAACATTATAGAAGAGAAA+AGG - Chr1:5817085-5817104 None:intergenic 20.0%
!! AAAAGAGAAGTAAAAAACAA+AGG - Chr1:5816662-5816681 None:intergenic 20.0%
!! AAAGAGAAGTAAAAAACAAA+GGG - Chr1:5816661-5816680 None:intergenic 20.0%
!! ATTTGTATTAAAGGAAGTAA+AGG - Chr1:5817995-5818014 None:intergenic 20.0%
!! TACTGATCTTAAATATAAGA+CGG + Chr1:5818627-5818646 MsG0180000423.01.T01:exon 20.0%
!! TAGATTAATAATCAGATCAT+AGG - Chr1:5817040-5817059 None:intergenic 20.0%
!! TCATCATAATCATAATCTAA+TGG - Chr1:5818558-5818577 None:intergenic 20.0%
!!! CGATAAATGATAAATTTTAG+TGG - Chr1:5817844-5817863 None:intergenic 20.0%
!!! TACCTTATATTTTGATTTCT+TGG - Chr1:5817640-5817659 None:intergenic 20.0%
!!! TTCATACTTTTTGACATTTT+TGG + Chr1:5818691-5818710 MsG0180000423.01.T01:three_prime_UTR 20.0%
! ACAAAACAACACAATTACTA+TGG - Chr1:5816895-5816914 None:intergenic 25.0%
! ATAGGAAAGAATAGTGAATA+AGG - Chr1:5817790-5817809 None:intergenic 25.0%
! ATGATGAAACCTAGTAATTA+TGG + Chr1:5817607-5817626 MsG0180000423.01.T01:CDS 25.0%
! GTCCAAGAAATCAAAATATA+AGG + Chr1:5817635-5817654 MsG0180000423.01.T01:CDS 25.0%
! TAAAAAGATAAAATAGAGGC+AGG - Chr1:5818089-5818108 None:intergenic 25.0%
! TAATTACTAGGTTTCATCAT+TGG - Chr1:5817607-5817626 None:intergenic 25.0%
! TAGTTAACATGAAAACATGT+TGG + Chr1:5818311-5818330 MsG0180000423.01.T01:intron 25.0%
! TTGATGAATTATAGAGTTGT+TGG - Chr1:5817351-5817370 None:intergenic 25.0%
!!! ATCTTAAGCACTTTAGTTTT+AGG - Chr1:5818423-5818442 None:intergenic 25.0%
!!! CTCTTTGATTTGATTACTTT+AGG + Chr1:5817279-5817298 MsG0180000423.01.T01:five_prime_UTR 25.0%
!!! TAATTGGTGACTATTTTGTT+TGG + Chr1:5818741-5818760 MsG0180000423.01.T01:three_prime_UTR 25.0%
!!! TCTTAAGCACTTTAGTTTTA+GGG - Chr1:5818422-5818441 None:intergenic 25.0%
AAACAACACAATTACTATGG+TGG - Chr1:5816892-5816911 None:intergenic 30.0%
AAAGAATAGTGAATAAGGCT+GGG - Chr1:5817785-5817804 None:intergenic 30.0%
ACAATTCAAGACTAAGAACA+AGG + Chr1:5818455-5818474 MsG0180000423.01.T01:CDS 30.0%
AGAAAATCATGATCATCATC+AGG + Chr1:5816619-5816638 MsG0180000423.01.T01:five_prime_UTR 30.0%
CAATATTTCTCCTGTTAATC+AGG + Chr1:5816559-5816578 MsG0180000423.01.T01:five_prime_UTR 30.0%
CACAAATTTATCATCATCCT+TGG + Chr1:5817408-5817427 MsG0180000423.01.T01:CDS 30.0%
CAGGAGAAATATTGAAGAAT+TGG - Chr1:5816553-5816572 None:intergenic 30.0%
CATTACACCTGCATTTATTA+TGG + Chr1:5818827-5818846 MsG0180000423.01.T01:three_prime_UTR 30.0%
TGATCTTAAATATAAGACGG+TGG + Chr1:5818630-5818649 MsG0180000423.01.T01:exon 30.0%
TTCATAAGGGATGTCAAATA+TGG + Chr1:5817931-5817950 MsG0180000423.01.T01:intron 30.0%
! TAAATATAAGACGGTGGATT+TGG + Chr1:5818636-5818655 MsG0180000423.01.T01:three_prime_UTR 30.0%
! TTTAACTTACTTGGAGACTT+TGG + Chr1:5816596-5816615 MsG0180000423.01.T01:five_prime_UTR 30.0%
! TTTAGTGGATCATAACAACA+AGG - Chr1:5817829-5817848 None:intergenic 30.0%
! TTTTGTAACAAGAGAACGTT+TGG + Chr1:5816909-5816928 MsG0180000423.01.T01:five_prime_UTR 30.0%
!! ATTACTTTAGGATCATAAGC+TGG + Chr1:5817291-5817310 MsG0180000423.01.T01:five_prime_UTR 30.0%
!! TTCTTAGTCTTGAATTGTGT+AGG - Chr1:5818453-5818472 None:intergenic 30.0%
!! TTGTTGTTTGGTCTCATTAT+TGG - Chr1:5817544-5817563 None:intergenic 30.0%
!!! CTTAAGCACTTTAGTTTTAG+GGG - Chr1:5818421-5818440 None:intergenic 30.0%
!!! TGCAACACAAACCTTATTTT+TGG - Chr1:5818809-5818828 None:intergenic 30.0%
AATGGATGTCTTCAAAGATG+AGG + Chr1:5817473-5817492 MsG0180000423.01.T01:CDS 35.0%
ACAATCAGAACAAACCCTAA+CGG - Chr1:5817701-5817720 None:intergenic 35.0%
AGAAGTAGTTGAAGTTGTAG+AGG - Chr1:5818493-5818512 None:intergenic 35.0%
ATGCAGCACAACCAAAAATA+AGG + Chr1:5818795-5818814 MsG0180000423.01.T01:three_prime_UTR 35.0%
CCAAGTAAGTTAAAGAAGGT+AGG - Chr1:5816590-5816609 None:intergenic 35.0%
GAAAGAATAGTGAATAAGGC+TGG - Chr1:5817786-5817805 None:intergenic 35.0%
GTCTCCAAGTAAGTTAAAGA+AGG - Chr1:5816594-5816613 None:intergenic 35.0%
TGACCTTGTAGTAAGGAATT+AGG - Chr1:5816527-5816546 None:intergenic 35.0%
TGATTATGATGAAGCAGCAA+CGG + Chr1:5818566-5818585 MsG0180000423.01.T01:CDS 35.0%
TGGGATTAACGAATTACCTT+TGG - Chr1:5817766-5817785 None:intergenic 35.0%
TTCATCAAGTGAGTCAGTTA+TGG + Chr1:5817363-5817382 MsG0180000423.01.T01:exon 35.0%
! CCTACCTTCTTTAACTTACT+TGG + Chr1:5816587-5816606 MsG0180000423.01.T01:five_prime_UTR 35.0%
! GGACTAGTACCATAATTACT+AGG - Chr1:5817619-5817638 None:intergenic 35.0%
! GGATTTGGATTTTCTCATGT+GGG + Chr1:5818651-5818670 MsG0180000423.01.T01:three_prime_UTR 35.0%
! TGGATTTGGATTTTCTCATG+TGG + Chr1:5818650-5818669 MsG0180000423.01.T01:three_prime_UTR 35.0%
!!! TTGGTTTTGACCTTGTAGTA+AGG - Chr1:5816534-5816553 None:intergenic 35.0%
AACACACAGAGAAAGAACAG+TGG - Chr1:5816447-5816466 None:intergenic 40.0%
AAGAACAGTGGACAGTACAA+AGG - Chr1:5816435-5816454 None:intergenic 40.0%
AAGCTGGCATTTCATCATGA+TGG + Chr1:5817307-5817326 MsG0180000423.01.T01:five_prime_UTR 40.0%
ACAACTTCAACTACTTCTGC+TGG + Chr1:5818495-5818514 MsG0180000423.01.T01:CDS 40.0%
AGAACAGTGGACAGTACAAA+GGG - Chr1:5816434-5816453 None:intergenic 40.0%
AGCAGCAAAAAGATGAGTCA+CGG + Chr1:5817442-5817461 MsG0180000423.01.T01:CDS 40.0%
ATTCAGAGAAACAGGAGTCA+TGG - Chr1:5816495-5816514 None:intergenic 40.0%
GAATTACCTTTGGACCCATA+GGG - Chr1:5817756-5817775 None:intergenic 40.0%
GGTCACTCTCTCACTTTAAT+AGG - Chr1:5817808-5817827 None:intergenic 40.0%
GGTCCTAATTCCTTACTACA+AGG + Chr1:5816521-5816540 MsG0180000423.01.T01:five_prime_UTR 40.0%
TGGTCTCATTATTGGAGTTG+TGG - Chr1:5817536-5817555 None:intergenic 40.0%
TGTAACAAGAGAACGTTTGG+TGG + Chr1:5816912-5816931 MsG0180000423.01.T01:five_prime_UTR 40.0%
TGTAGTAAGGAATTAGGACC+TGG - Chr1:5816521-5816540 None:intergenic 40.0%
TGTTACCGCTGTTACTACTA+GGG - Chr1:5817675-5817694 None:intergenic 40.0%
TTGTTACCGCTGTTACTACT+AGG - Chr1:5817676-5817695 None:intergenic 40.0%
TTTATCATCATCCTTGGAGC+TGG + Chr1:5817414-5817433 MsG0180000423.01.T01:CDS 40.0%
TTTGCAATGCTTGTGGAATC+AGG + Chr1:5818343-5818362 MsG0180000423.01.T01:CDS 40.0%
! CTTCTGGTGGATATATCTTC+TGG + Chr1:5818597-5818616 MsG0180000423.01.T01:CDS 40.0%
! GTGGCTGCAATATTGTTGTT+TGG - Chr1:5817556-5817575 None:intergenic 40.0%
! TGTTACTACTAGGGCTTGTT+TGG - Chr1:5817666-5817685 None:intergenic 40.0%
!! CTTGATAGCTTTGTCAGTAG+TGG - Chr1:5817575-5817594 None:intergenic 40.0%
AAACAGGAGTCATGGATGGA+TGG - Chr1:5816487-5816506 None:intergenic 45.0%
ACAAGCCCTAGTAGTAACAG+CGG + Chr1:5817667-5817686 MsG0180000423.01.T01:CDS 45.0%
AGAGAAACAGGAGTCATGGA+TGG - Chr1:5816491-5816510 None:intergenic 45.0%
AGTAAGGAATTAGGACCTGG+CGG - Chr1:5816518-5816537 None:intergenic 45.0%
AGTGGACAGTACAAAGGGAT+AGG - Chr1:5816429-5816448 None:intergenic 45.0%
CGAATTACCTTTGGACCCAT+AGG - Chr1:5817757-5817776 None:intergenic 45.0%
GCAGCAAAAAGATGAGTCAC+GGG + Chr1:5817443-5817462 MsG0180000423.01.T01:CDS 45.0%
GTGGACAGTACAAAGGGATA+GGG - Chr1:5816428-5816447 None:intergenic 45.0%
TGGTTGTGCTGCATGTACAT+CGG - Chr1:5818789-5818808 None:intergenic 45.0%
TGTGGGAATTTCACAGTGAG+AGG + Chr1:5818668-5818687 MsG0180000423.01.T01:three_prime_UTR 45.0%
TTATGATGAAGCAGCAACGG+CGG + Chr1:5818569-5818588 MsG0180000423.01.T01:CDS 45.0%
TTGTGGAATCAGGCAGAGAA+AGG + Chr1:5818353-5818372 MsG0180000423.01.T01:CDS 45.0%
! CAGTCACTTTGCAATGCTTG+TGG + Chr1:5818336-5818355 MsG0180000423.01.T01:intron 45.0%
!! GTAGGAGTGTCCTGATTAAC+AGG - Chr1:5816572-5816591 None:intergenic 45.0%
!!! ACTTTTATATTAAAAATAAT+TGG + Chr1:5818725-5818744 MsG0180000423.01.T01:three_prime_UTR 5.0%
!!! ATATTAATATATTTTTTTTG+TGG - Chr1:5817905-5817924 None:intergenic 5.0%
!!! TAATTTTTATTATTATATCA+CGG + Chr1:5818177-5818196 MsG0180000423.01.T01:intron 5.0%
!!! TATTAATATATTTTTTTTGT+GGG - Chr1:5817904-5817923 None:intergenic 5.0%
ACAGCGGTAACAACACCGTT+AGG + Chr1:5817683-5817702 MsG0180000423.01.T01:CDS 50.0%
AGGGGATGTAGCCAAACCAT+TGG - Chr1:5818403-5818422 None:intergenic 50.0%
CAGCGGTAACAACACCGTTA+GGG + Chr1:5817684-5817703 MsG0180000423.01.T01:CDS 50.0%
CAGGCAGAGAAAGGCAAGAA+GGG + Chr1:5818362-5818381 MsG0180000423.01.T01:CDS 50.0%
GTACATCCCATACCCCACTA+TGG + Chr1:5817722-5817741 MsG0180000423.01.T01:CDS 50.0%
TCAGGCAGAGAAAGGCAAGA+AGG + Chr1:5818361-5818380 MsG0180000423.01.T01:CDS 50.0%
TGAGTCACGGGTCTGAGAAA+TGG + Chr1:5817455-5817474 MsG0180000423.01.T01:CDS 50.0%
! ACTCCTCCATAGTGGGGTAT+GGG - Chr1:5817731-5817750 None:intergenic 50.0%
ACCATTGGCAGCTTCAGCCA+TGG - Chr1:5818388-5818407 None:intergenic 55.0%
ACTATGGAGGAGTGGCCCTA+TGG + Chr1:5817738-5817757 MsG0180000423.01.T01:CDS 55.0%
ATAGGGCCACTCCTCCATAG+TGG - Chr1:5817739-5817758 None:intergenic 55.0%
CATACCCCACTATGGAGGAG+TGG + Chr1:5817730-5817749 MsG0180000423.01.T01:CDS 55.0%
CATCCCATACCCCACTATGG+AGG + Chr1:5817725-5817744 MsG0180000423.01.T01:CDS 55.0%
CTATGGAGGAGTGGCCCTAT+GGG + Chr1:5817739-5817758 MsG0180000423.01.T01:CDS 55.0%
GAGAAAGGCAAGAAGGGCCA+TGG + Chr1:5818368-5818387 MsG0180000423.01.T01:CDS 55.0%
GCTGCTATCTTCCAGCTCCA+AGG - Chr1:5817428-5817447 None:intergenic 55.0%
GGCTGAAGCTGCCAATGGTT+TGG + Chr1:5818389-5818408 MsG0180000423.01.T01:CDS 55.0%
TAGGGCCACTCCTCCATAGT+GGG - Chr1:5817738-5817757 None:intergenic 55.0%
! CACTCCTCCATAGTGGGGTA+TGG - Chr1:5817732-5817751 None:intergenic 55.0%
! CCTGTTTCTCTGAATCCGCC+AGG + Chr1:5816500-5816519 MsG0180000423.01.T01:five_prime_UTR 55.0%
!! CCTGGCGGATTCAGAGAAAC+AGG - Chr1:5816503-5816522 None:intergenic 55.0%
AGGGCCACTCCTCCATAGTG+GGG - Chr1:5817737-5817756 None:intergenic 60.0%
GAGTGGCCCTATGGGTCCAA+AGG + Chr1:5817747-5817766 MsG0180000423.01.T01:CDS 60.0%
GCCATGGCTGAAGCTGCCAA+TGG + Chr1:5818384-5818403 MsG0180000423.01.T01:CDS 60.0%
AACGGCGGCACGACTTCTGG+TGG + Chr1:5818584-5818603 MsG0180000423.01.T01:CDS 65.0%
AGCAACGGCGGCACGACTTC+TGG + Chr1:5818581-5818600 MsG0180000423.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 5816380 5818850 5816380 ID=MsG0180000423.01;Name=MsG0180000423.01
Chr1 mRNA 5816380 5818850 5816380 ID=MsG0180000423.01.T01;Parent=MsG0180000423.01;Name=MsG0180000423.01.T01;_AED=0.16;_eAED=0.16;_QI=1002|1|1|1|1|1|2|218|226
Chr1 exon 5818339 5818850 5818339 ID=MsG0180000423.01.T01:exon:2659;Parent=MsG0180000423.01.T01
Chr1 exon 5816380 5817768 5816380 ID=MsG0180000423.01.T01:exon:2658;Parent=MsG0180000423.01.T01
Chr1 five_prime_UTR 5816380 5817381 5816380 ID=MsG0180000423.01.T01:five_prime_utr;Parent=MsG0180000423.01.T01
Chr1 CDS 5817382 5817768 5817382 ID=MsG0180000423.01.T01:cds;Parent=MsG0180000423.01.T01
Chr1 CDS 5818339 5818632 5818339 ID=MsG0180000423.01.T01:cds;Parent=MsG0180000423.01.T01
Chr1 three_prime_UTR 5818633 5818850 5818633 ID=MsG0180000423.01.T01:three_prime_utr;Parent=MsG0180000423.01.T01
Gene Sequence

>MsG0180000423.01.T01

ATGGTTGATTCAAGCAGTGCACGTGACACAAATTTATCATCATCCTTGGAGCTGGAAGATAGCAGCAAAAAGATGAGTCACGGGTCTGAGAAATGGATGTCTTCAAAGATGAGGTTGATGAATAAAATGATCAACACAACTGCTACTGTTGCCACAACTCCAATAATGAGACCAAACAACAATATTGCAGCCACTACTGACAAAGCTATCAAGACAACAACTCCAATGATGAAACCTAGTAATTATGGTACTAGTCCAAGAAATCAAAATATAAGGTACAACCAAACAAGCCCTAGTAGTAACAGCGGTAACAACACCGTTAGGGTTTGTTCTGATTGTAGTACATCCCATACCCCACTATGGAGGAGTGGCCCTATGGGTCCAAAGTCACTTTGCAATGCTTGTGGAATCAGGCAGAGAAAGGCAAGAAGGGCCATGGCTGAAGCTGCCAATGGTTTGGCTACATCCCCTAAAACTAAAGTGCTTAAGATAAAGAAGCCTACACAATTCAAGACTAAGAACAAGGCTTCTACTAGTACCTCTACAACTTCAACTACTTCTGCTGGCTCATCATCTCAAGATGTGAAGAAACTTGAATCTTTTCCATTAGATTATGATTATGATGAAGCAGCAACGGCGGCACGACTTCTGGTGGATATATCTTCTGGTGTTACTTACTGA

Protein sequence

>MsG0180000423.01.T01

MVDSSSARDTNLSSSLELEDSSKKMSHGSEKWMSSKMRLMNKMINTTATVATTPIMRPNNNIAATTDKAIKTTTPMMKPSNYGTSPRNQNIRYNQTSPSSNSGNNTVRVCSDCSTSHTPLWRSGPMGPKSLCNACGIRQRKARRAMAEAANGLATSPKTKVLKIKKPTQFKTKNKASTSTSTTSTTSAGSSSQDVKKLESFPLDYDYDEAATAARLLVDISSGVTY*