AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004260.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004260.01.T01 MTR_1g076190 84.603 643 40 3 1 588 1 639 0.0 1086
MsG0180004260.01.T01 MTR_1g076190 86.885 610 25 2 1 555 1 610 0.0 1069
MsG0180004260.01.T01 MTR_1g043190 69.744 585 121 8 4 534 2 584 0.0 809
MsG0180004260.01.T01 MTR_5g063920 65.148 439 150 2 2 439 5 441 0.0 607
MsG0180004260.01.T01 MTR_5g063920 65.148 439 150 2 2 439 5 441 0.0 607
MsG0180004260.01.T01 MTR_5g063920 68.000 275 88 0 165 439 3 277 9.91e-131 392
MsG0180004260.01.T01 MTR_4g011370 28.322 459 291 15 1 437 11 453 1.25e-39 152
MsG0180004260.01.T01 MTR_4g011370 28.322 459 291 15 1 437 11 453 1.28e-39 151
MsG0180004260.01.T01 MTR_4g011370 26.638 458 276 16 1 437 11 429 8.19e-32 129
MsG0180004260.01.T01 MTR_3g108700 27.968 497 284 18 2 453 94 561 1.42e-28 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004260.01.T01 AT1G04400 76.484 438 100 1 5 439 6 443 0.0 725
MsG0180004260.01.T01 AT1G04400 76.484 438 100 1 5 439 6 443 0.0 725
MsG0180004260.01.T01 AT4G08920 63.825 434 154 2 7 439 15 446 0.0 588
MsG0180004260.01.T01 AT3G15620 29.399 466 276 16 6 439 26 470 1.16e-41 158
MsG0180004260.01.T01 AT5G24850 29.897 485 277 21 2 453 82 536 8.04e-34 136
MsG0180004260.01.T01 AT3G15620 29.009 424 249 15 6 397 26 429 4.83e-32 129

Find 156 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGGCTTTAACAGAATTTA+TGG 0.120110 1:+75692668 MsG0180004260.01.T01:CDS
TAAAATTGTCCTTCCTCTTT+AGG 0.172518 1:-75691443 None:intergenic
TCAGAAAGTGCCGGCATTTC+AGG 0.176635 1:+75694555 MsG0180004260.01.T01:CDS
TGCCTTACATATTCTCCTTC+TGG 0.214099 1:-75694229 None:intergenic
AATGGGGAATGAAGTATTTC+TGG 0.219485 1:+75693138 MsG0180004260.01.T01:CDS
CTGTATTCCCTGTGTTTATA+TGG 0.246769 1:+75691417 MsG0180004260.01.T01:CDS
CTAATAGGTAGTTCATTCTT+AGG 0.252046 1:-75694580 None:intergenic
TTGAAGCCTAAGGTAGAATA+TGG 0.254532 1:+75691310 MsG0180004260.01.T01:exon
CCTCATCTTCAAATCTAAAA+TGG 0.261221 1:+75694777 MsG0180004260.01.T01:CDS
GAACCATTGTTTGGTTTAGA+AGG 0.269151 1:+75691342 MsG0180004260.01.T01:CDS
GTATTTCTGGGACACGCTTT+TGG 0.272715 1:+75693151 MsG0180004260.01.T01:CDS
AAAATTGATACACTGAAAAT+TGG 0.292318 1:-75691208 None:intergenic
ACTCATGAGAGAGCACTTCT+TGG 0.306648 1:+75692933 MsG0180004260.01.T01:CDS
CATGTGGGCTGAGTTGGTTT+TGG 0.306649 1:+75691021 MsG0180004260.01.T01:five_prime_UTR
TCCTTAAGGAGGACAACTTT+TGG 0.310889 1:-75694499 None:intergenic
CTAAGAATGAACTACCTATT+AGG 0.318143 1:+75694581 MsG0180004260.01.T01:CDS
TTGCATACTACTTTGCTATC+TGG 0.318194 1:-75691056 None:intergenic
AAATGTTCAATAGAGGATTT+AGG 0.326416 1:+75692570 MsG0180004260.01.T01:CDS
CTCCAAGTCTTGAAGTTTGA+CGG 0.343433 1:-75692987 None:intergenic
TTATCAGTGAAAAGCTATAA+TGG 0.349616 1:+75692147 MsG0180004260.01.T01:CDS
TGTTGCTTCTACCTTGGAAA+TGG 0.350799 1:+75693120 MsG0180004260.01.T01:CDS
TGCAAGCATCTCTGCCAAAA+AGG 0.354280 1:-75692234 None:intergenic
TATCAGTGAAAAGCTATAAT+GGG 0.356330 1:+75692148 MsG0180004260.01.T01:CDS
CTGTAGAGCAAGTGTCTTCA+TGG 0.357346 1:-75694690 None:intergenic
TCCAAAAGTTGTCCTCCTTA+AGG 0.363395 1:+75694498 MsG0180004260.01.T01:CDS
CTCTTAGTCCAATTGCTCTA+AGG 0.366113 1:-75692875 None:intergenic
ATAAGCTATAAGTACTTGTT+AGG 0.370776 1:+75691092 MsG0180004260.01.T01:five_prime_UTR
GTTGCTTCTACCTTGGAAAT+GGG 0.372170 1:+75693121 MsG0180004260.01.T01:CDS
CACCACCTTGAAACTCTTCC+TGG 0.373919 1:-75691467 None:intergenic
AAACCAAGCAACGCGTTACT+AGG 0.385656 1:+75692612 MsG0180004260.01.T01:CDS
TGCAGGAATGAGAGAACTTT+GGG 0.399544 1:+75693040 MsG0180004260.01.T01:CDS
TTATCCCCGTATCTCCATTT+CGG 0.407052 1:+75692753 MsG0180004260.01.T01:CDS
TGGTCTCGAACCAGTGAAAC+AGG 0.407880 1:-75692093 None:intergenic
CTCATTCCTGCATCAACTAA+AGG 0.411661 1:-75693029 None:intergenic
GTTGTGTTTAACCATCTCTA+TGG 0.412388 1:+75691617 MsG0180004260.01.T01:CDS
CGTCCTAGTAACGCGTTGCT+TGG 0.415085 1:-75692615 None:intergenic
CGCTCAAGCTCGTGACCGTC+TGG 0.421155 1:-75693227 None:intergenic
ATGAGAGAACTTTGGGCTAC+AGG 0.422513 1:+75693047 MsG0180004260.01.T01:CDS
TCTTGAACCAAGTGATTTCA+AGG 0.433323 1:-75691522 None:intergenic
CAAGGTGGAATAAGCGAAAC+AGG 0.434780 1:-75692270 None:intergenic
TTTATCAGATCCTGTTTCAC+TGG 0.435781 1:+75692083 MsG0180004260.01.T01:intron
GTAGCAATAGAACCATTGTT+TGG 0.440981 1:+75691333 MsG0180004260.01.T01:CDS
TGTCCCTTTCACAAGTTTGA+AGG 0.442030 1:-75691000 None:intergenic
CAGCACTAGCTGCTGCTGCT+AGG 0.442114 1:+75691387 MsG0180004260.01.T01:CDS
ATGCAGGAATGAGAGAACTT+TGG 0.446720 1:+75693039 MsG0180004260.01.T01:CDS
CTAGCAGCAGCAGCTAGTGC+TGG 0.448793 1:-75691386 None:intergenic
TGAAAATGTTGCTTCTACCT+TGG 0.450718 1:+75693114 MsG0180004260.01.T01:CDS
TCACACTCAACTCTCCGAAA+TGG 0.453446 1:-75692767 None:intergenic
ACTATCTTTCACATGATTCA+CGG 0.453888 1:-75694650 None:intergenic
TTGAAACTATAACTCTGATT+CGG 0.455014 1:-75693082 None:intergenic
GGCTACCCTTTAGTTGATGC+AGG 0.466577 1:+75693023 MsG0180004260.01.T01:CDS
TAGAAGGGATCTTAGAATTG+AGG 0.468841 1:+75691358 MsG0180004260.01.T01:CDS
TCATTCCTGCATCAACTAAA+GGG 0.470820 1:-75693028 None:intergenic
TGAAAATTGGCTACAAAGGT+TGG 0.471379 1:-75691195 None:intergenic
AGCACTAGCTGCTGCTGCTA+GGG 0.473785 1:+75691388 MsG0180004260.01.T01:CDS
GAGATGCTTGCACAAGCAAA+TGG 0.474718 1:+75692245 MsG0180004260.01.T01:CDS
CGGTCACGAGCTTGAGCGCT+TGG 0.474915 1:+75693232 MsG0180004260.01.T01:CDS
AACTCTCCGAAATGGAGATA+CGG 0.477912 1:-75692759 None:intergenic
CTCGGCTGGCAGTATATCTC+AGG 0.480304 1:+75693197 MsG0180004260.01.T01:CDS
CTAGCTGCTGCTGCTAGGGA+TGG 0.482748 1:+75691392 MsG0180004260.01.T01:CDS
AAAGAAAAGCTAGTGGAACT+TGG 0.484127 1:+75692123 MsG0180004260.01.T01:CDS
CTAGGACGAGCATGGTCTCC+TGG 0.486122 1:+75692630 MsG0180004260.01.T01:CDS
ATCCGTCAAACTTCAAGACT+TGG 0.488443 1:+75692985 MsG0180004260.01.T01:CDS
AGTCAAGAAATGTTCAATAG+AGG 0.489309 1:+75692563 MsG0180004260.01.T01:CDS
ACTCTCCGAAATGGAGATAC+GGG 0.489556 1:-75692758 None:intergenic
TTCTTAGGATCCTGAAATGC+CGG 0.490558 1:-75694565 None:intergenic
ATCCAGAAGGAGAATATGTA+AGG 0.496224 1:+75694227 MsG0180004260.01.T01:CDS
GATCAGTCCTTGAAATCACT+TGG 0.496518 1:+75691515 MsG0180004260.01.T01:CDS
ATGCCTTCAAACTTGTGAAA+GGG 0.496931 1:+75690997 MsG0180004260.01.T01:five_prime_UTR
ATGTCTGTCTGTTCTTGCCA+TGG 0.496950 1:-75694800 None:intergenic
ACTGAGGGATCCATCATCCT+TGG 0.498465 1:+75694280 MsG0180004260.01.T01:CDS
TACTTCACTACTCCAAGAAT+AGG 0.498999 1:+75692700 MsG0180004260.01.T01:CDS
GAGTACTCTCAATGCTCTCT+TGG 0.499541 1:+75691565 MsG0180004260.01.T01:CDS
GGATCTGTTGTATGAGCCTT+GGG 0.500509 1:+75692170 MsG0180004260.01.T01:CDS
AACCATTGTTTGGTTTAGAA+GGG 0.502214 1:+75691343 MsG0180004260.01.T01:CDS
TTTATCCAGGAAGAGTTTCA+AGG 0.505143 1:+75691462 MsG0180004260.01.T01:CDS
GAGATGGTTAAACACAACTT+TGG 0.505324 1:-75691612 None:intergenic
ACAGACATGGAGCAAAGCTC+AGG 0.507754 1:+75694815 MsG0180004260.01.T01:CDS
TGAAGAGAAGAGAAAGAACA+AGG 0.511587 1:+75694621 MsG0180004260.01.T01:CDS
CTACTCCAAGAATAGGCAAA+AGG 0.511893 1:+75692707 MsG0180004260.01.T01:CDS
AAGGGACATGTGGGCTGAGT+TGG 0.512399 1:+75691015 MsG0180004260.01.T01:five_prime_UTR
AGCCGAGGATATCACATTCA+AGG 0.517876 1:-75693181 None:intergenic
TGCTACCCATATTCTACCTT+AGG 0.519660 1:-75691316 None:intergenic
ATGGGGAATGAAGTATTTCT+GGG 0.522424 1:+75693139 MsG0180004260.01.T01:CDS
GAAGCAGTCTTTAGTTCACT+TGG 0.523042 1:+75691493 MsG0180004260.01.T01:CDS
GGAGCAAAGCTCAGGAAAGA+TGG 0.524223 1:+75694823 MsG0180004260.01.T01:CDS
GACGAGCATGGTCTCCTGGT+TGG 0.525145 1:+75692634 MsG0180004260.01.T01:CDS
CAGGAAGAGTTTCAAGGTGG+TGG 0.530377 1:+75691468 MsG0180004260.01.T01:CDS
GATGCCTTCAAACTTGTGAA+AGG 0.535690 1:+75690996 MsG0180004260.01.T01:five_prime_UTR
TTGTGGAACAGAAAATGAAT+AGG 0.538477 1:-75694747 None:intergenic
TCGCATAAAGCAGATATTGT+GGG 0.539284 1:+75692809 MsG0180004260.01.T01:CDS
GGGATCTGTTGTATGAGCCT+TGG 0.542320 1:+75692169 MsG0180004260.01.T01:CDS
AAGAATAGGCAAAAGGTTGG+TGG 0.546393 1:+75692714 MsG0180004260.01.T01:CDS
GTTGGCATTCTCGCCAACTC+AGG 0.548803 1:-75694259 None:intergenic
TGGTTGGAGCAATGCTGACA+AGG 0.549437 1:+75692650 MsG0180004260.01.T01:CDS
GTGGTGCATTCCAAGGATGA+TGG 0.551180 1:-75694290 None:intergenic
AAGGCAATGGCTACCTGAGT+TGG 0.551193 1:+75694246 MsG0180004260.01.T01:CDS
TTGAATGTGATATCCTCGGC+TGG 0.555532 1:+75693183 MsG0180004260.01.T01:CDS
CTTCAAATCTAAAATGGCCA+TGG 0.558284 1:+75694783 MsG0180004260.01.T01:CDS
TTGGGAAGTATATGATGAGA+AGG 0.559387 1:+75692188 MsG0180004260.01.T01:CDS
ACTTGGAGACAAGGTAGGAC+TGG 0.559715 1:+75693002 MsG0180004260.01.T01:CDS
TACTTCATTCCCCATTTCCA+AGG 0.559892 1:-75693131 None:intergenic
TTCTCATCATATACTTCCCA+AGG 0.561654 1:-75692186 None:intergenic
TGAGCGCTTGGATGATCCTG+AGG 0.562126 1:+75693244 MsG0180004260.01.T01:CDS
TTGTCAGCATTGCTCCAACC+AGG 0.563625 1:-75692648 None:intergenic
TTAATGTGCATACCTTCAGC+AGG 0.564087 1:-75692303 None:intergenic
GGATCTAGGTTTGATCCAGA+AGG 0.564228 1:+75694214 MsG0180004260.01.T01:CDS
CTGTTTCGCTTATTCCACCT+TGG 0.564355 1:+75692271 MsG0180004260.01.T01:CDS
TGAAGCCTAAGGTAGAATAT+GGG 0.566193 1:+75691311 MsG0180004260.01.T01:exon
GTTTATATGGTGTCCTAAAG+AGG 0.569764 1:+75691430 MsG0180004260.01.T01:CDS
ACACTAAGTGGTGCATTCCA+AGG 0.571610 1:-75694297 None:intergenic
TGGCAATTAATTCCTGCTGA+AGG 0.571990 1:+75692291 MsG0180004260.01.T01:CDS
TTGCTTCTACCTTGGAAATG+GGG 0.574156 1:+75693122 MsG0180004260.01.T01:CDS
GACCTTGAATGTGATATCCT+CGG 0.577392 1:+75693179 MsG0180004260.01.T01:CDS
AGCTAATGATCAGAAAGTGC+CGG 0.577971 1:+75694546 MsG0180004260.01.T01:CDS
CTCGCATAAAGCAGATATTG+TGG 0.579056 1:+75692808 MsG0180004260.01.T01:CDS
AAACTTGTGAAAGGGACATG+TGG 0.579526 1:+75691005 MsG0180004260.01.T01:five_prime_UTR
TAGCAAAGTAGTATGCAAGT+TGG 0.582266 1:+75691061 MsG0180004260.01.T01:five_prime_UTR
GAAGATGAGGAACATTGTTG+TGG 0.582759 1:-75694764 None:intergenic
ACACTGAAAATTGGCTACAA+AGG 0.582765 1:-75691199 None:intergenic
AAGGAGAATATGTAAGGCAA+TGG 0.584996 1:+75694233 MsG0180004260.01.T01:CDS
CAGATATTGTGGGGAAACGA+AGG 0.585311 1:+75692819 MsG0180004260.01.T01:CDS
AGGATGATGGATCCCTCAGT+TGG 0.585996 1:-75694277 None:intergenic
GAGAACTTTGGGCTACAGGA+TGG 0.589010 1:+75693051 MsG0180004260.01.T01:CDS
TCCAAGAATAGGCAAAAGGT+TGG 0.591255 1:+75692711 MsG0180004260.01.T01:CDS
AGTGCTCTCTCATGAGTGAA+CGG 0.592898 1:-75692927 None:intergenic
GGAAACGAAGGCAACAGTGT+TGG 0.600244 1:+75692831 MsG0180004260.01.T01:CDS
ATACTACTTTGCTATCTGGA+AGG 0.601501 1:-75691052 None:intergenic
CTGAGATATACTGCCAGCCG+AGG 0.601742 1:-75693196 None:intergenic
TTTGACGGATCAGCATTCCA+AGG 0.608296 1:-75692972 None:intergenic
TCAAGACTTGGAGACAAGGT+AGG 0.609400 1:+75692997 MsG0180004260.01.T01:CDS
TCAGCAGGAATTAATTGCCA+AGG 0.610860 1:-75692288 None:intergenic
ATATGGTGTCCTAAAGAGGA+AGG 0.616143 1:+75691434 MsG0180004260.01.T01:CDS
TTAGGACACCATATAAACAC+AGG 0.616586 1:-75691425 None:intergenic
TTGACGGATCAGCATTCCAA+GGG 0.619378 1:-75692971 None:intergenic
AACTTCAAGACTTGGAGACA+AGG 0.622090 1:+75692993 MsG0180004260.01.T01:CDS
TTGGCGAGAATGCCAACTGA+GGG 0.625753 1:+75694265 MsG0180004260.01.T01:CDS
CGCATAAAGCAGATATTGTG+GGG 0.626353 1:+75692810 MsG0180004260.01.T01:CDS
AGCACTACTTACCATAGAGA+TGG 0.626546 1:-75691628 None:intergenic
CAACATCAAAGAAAAGCTAG+TGG 0.627181 1:+75692116 MsG0180004260.01.T01:CDS
ATCTCAGGATGCTTACCAGA+CGG 0.628095 1:+75693212 MsG0180004260.01.T01:CDS
ATCAGTGAAAAGCTATAATG+GGG 0.635939 1:+75692149 MsG0180004260.01.T01:CDS
ATCCCTTCTAAACCAAACAA+TGG 0.637331 1:-75691345 None:intergenic
ACGCGTTACTAGGACGAGCA+TGG 0.642349 1:+75692622 MsG0180004260.01.T01:CDS
GCAGGAATTAATTGCCAAGG+TGG 0.644364 1:-75692285 None:intergenic
TTAGCTGAAATAGTAGCAGA+CGG 0.651586 1:-75694529 None:intergenic
AACTTGTGAAAGGGACATGT+GGG 0.652408 1:+75691006 MsG0180004260.01.T01:five_prime_UTR
TGGGAAGTATATGATGAGAA+GGG 0.652926 1:+75692189 MsG0180004260.01.T01:CDS
ATTTCGGAGAGTTGAGTGTG+AGG 0.666895 1:+75692769 MsG0180004260.01.T01:CDS
ATGGCAAGAACAGACAGACA+TGG 0.671080 1:+75694802 MsG0180004260.01.T01:CDS
GTTGGCGAGAATGCCAACTG+AGG 0.673112 1:+75694264 MsG0180004260.01.T01:CDS
CTCTCCGAAATGGAGATACG+GGG 0.691586 1:-75692757 None:intergenic
ATCCAGGAAGAGTTTCAAGG+TGG 0.698355 1:+75691465 MsG0180004260.01.T01:CDS
ATACGGGGATAACAGCGAGG+TGG 0.704873 1:-75692742 None:intergenic
TAGGACACCATATAAACACA+GGG 0.720737 1:-75691424 None:intergenic
GAGATACGGGGATAACAGCG+AGG 0.744456 1:-75692745 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATACACAAAAAAAATA+TGG - Chr1:75690971-75690990 None:intergenic 10.0%
!!! TTAATTATGTTTCTAAATTA+GGG + Chr1:75690941-75690960 MsG0180004260.01.T01:intron 10.0%
!! AGCTTATAACATATATAAAA+TGG - Chr1:75693901-75693920 None:intergenic 15.0%
!! TGAATAAATTATTGAATACA+GGG - Chr1:75693322-75693341 None:intergenic 15.0%
!! TTGAATAAATTATTGAATAC+AGG - Chr1:75693323-75693342 None:intergenic 15.0%
!!! ATATAGAAACAAGTTTTATT+AGG + Chr1:75694095-75694114 MsG0180004260.01.T01:intron 15.0%
!!! GTTAATTATGTTTCTAAATT+AGG + Chr1:75690940-75690959 MsG0180004260.01.T01:intron 15.0%
!!! TTCATTTATAGTATAGTTTT+TGG + Chr1:75692342-75692361 MsG0180004260.01.T01:intron 15.0%
!! AAAATTGATACACTGAAAAT+TGG - Chr1:75691211-75691230 None:intergenic 20.0%
!! TAAAATTTCAAAGTACAAAC+TGG - Chr1:75693624-75693643 None:intergenic 20.0%
!! TCCAATAATTGATATAGATA+TGG + Chr1:75694362-75694381 MsG0180004260.01.T01:intron 20.0%
!! TCTATATCAATTATTGGATT+CGG - Chr1:75694360-75694379 None:intergenic 20.0%
!!! TAGATAATAGCTTTTATATC+TGG + Chr1:75693497-75693516 MsG0180004260.01.T01:intron 20.0%
!!! TTTGGTTACACTTAATATTT+TGG + Chr1:75691763-75691782 MsG0180004260.01.T01:intron 20.0%
!!! TTTTTCTATTAGTAACATAG+AGG + Chr1:75691815-75691834 MsG0180004260.01.T01:intron 20.0%
! AAATGTTCAATAGAGGATTT+AGG + Chr1:75692570-75692589 MsG0180004260.01.T01:CDS 25.0%
! ATAAATTATTGAATACAGGG+TGG - Chr1:75693319-75693338 None:intergenic 25.0%
! ATAAGCTATAAGTACTTGTT+AGG + Chr1:75691092-75691111 MsG0180004260.01.T01:five_prime_UTR 25.0%
! ATGTTACTAATAGAAAAAGC+CGG - Chr1:75691813-75691832 None:intergenic 25.0%
! CAAATTAGATATTTAACGAG+CGG - Chr1:75693552-75693571 None:intergenic 25.0%
! GCCATATCTATATCAATTAT+TGG - Chr1:75694366-75694385 None:intergenic 25.0%
! TAAGTTCGTTTATTCAAACA+GGG - Chr1:75693793-75693812 None:intergenic 25.0%
! TATCAGTGAAAAGCTATAAT+GGG + Chr1:75692148-75692167 MsG0180004260.01.T01:CDS 25.0%
! TTATCAGTGAAAAGCTATAA+TGG + Chr1:75692147-75692166 MsG0180004260.01.T01:CDS 25.0%
! TTGAAACTATAACTCTGATT+CGG - Chr1:75693085-75693104 None:intergenic 25.0%
! TTGCTGTATCATAATAACTA+TGG - Chr1:75692506-75692525 None:intergenic 25.0%
!! AAAAGATGATACTTTCGTTT+TGG - Chr1:75692469-75692488 None:intergenic 25.0%
!! AATAAAAAGTTTGAAGCCTA+AGG + Chr1:75691300-75691319 MsG0180004260.01.T01:five_prime_UTR 25.0%
!!! AAACCATTTTTGAACTTTTG+AGG + Chr1:75691259-75691278 MsG0180004260.01.T01:five_prime_UTR 25.0%
!!! GATTTGATTTGATTCATGTT+TGG + Chr1:75691745-75691764 MsG0180004260.01.T01:intron 25.0%
!!! TATAGTTTTTGGTTCTACAT+TGG + Chr1:75692353-75692372 MsG0180004260.01.T01:intron 25.0%
!!! TTATAGGTTAGTTTGTATGA+TGG + Chr1:75691653-75691672 MsG0180004260.01.T01:intron 25.0%
!!! TTGCTTTTAACACAGATTAT+TGG + Chr1:75693569-75693588 MsG0180004260.01.T01:intron 25.0%
AAACTATCTTGGAGATCTTA+TGG + Chr1:75693929-75693948 MsG0180004260.01.T01:intron 30.0%
AAGTAATACCAATCTCACTT+AGG - Chr1:75694069-75694088 None:intergenic 30.0%
AATTTCCCACATCTTGAATA+TGG - Chr1:75694409-75694428 None:intergenic 30.0%
ACAATCATGGTACAAAATGT+TGG - Chr1:75692063-75692082 None:intergenic 30.0%
ACCAAATTTATGCAGTTGAT+TGG - Chr1:75693463-75693482 None:intergenic 30.0%
ACTATCTTTCACATGATTCA+CGG - Chr1:75694653-75694672 None:intergenic 30.0%
AGGATCTGATAAAACAATCA+TGG - Chr1:75692076-75692095 None:intergenic 30.0%
AGTAAGTTAGTAGTTGTGTT+GGG - Chr1:75692433-75692452 None:intergenic 30.0%
AGTAATACCAATCTCACTTA+GGG - Chr1:75694068-75694087 None:intergenic 30.0%
AGTCAAGAAATGTTCAATAG+AGG + Chr1:75692563-75692582 MsG0180004260.01.T01:CDS 30.0%
ATAGCGTGATTTCTCTAATT+TGG + Chr1:75694168-75694187 MsG0180004260.01.T01:intron 30.0%
ATCAGTGAAAAGCTATAATG+GGG + Chr1:75692149-75692168 MsG0180004260.01.T01:CDS 30.0%
CAACTATTATAGTCATGCTA+AGG - Chr1:75693733-75693752 None:intergenic 30.0%
CCTCATCTTCAAATCTAAAA+TGG + Chr1:75694777-75694796 MsG0180004260.01.T01:CDS 30.0%
CTAAGAATGAACTACCTATT+AGG + Chr1:75694581-75694600 MsG0180004260.01.T01:CDS 30.0%
CTAATAGGTAGTTCATTCTT+AGG - Chr1:75694583-75694602 None:intergenic 30.0%
GAACTGTAAAGAAACATATC+AGG - Chr1:75692024-75692043 None:intergenic 30.0%
GTAAAATGCTGGATTCTTAT+TGG + Chr1:75691908-75691927 MsG0180004260.01.T01:intron 30.0%
GTAAGTTCGTTTATTCAAAC+AGG - Chr1:75693794-75693813 None:intergenic 30.0%
TAAAATTGTCCTTCCTCTTT+AGG - Chr1:75691446-75691465 None:intergenic 30.0%
TAGTAAGTTAGTAGTTGTGT+TGG - Chr1:75692434-75692453 None:intergenic 30.0%
TCACCTCAAAAGTTCAAAAA+TGG - Chr1:75691265-75691284 None:intergenic 30.0%
TCCAATCAACTGCATAAATT+TGG + Chr1:75693459-75693478 MsG0180004260.01.T01:intron 30.0%
TTGTGGAACAGAAAATGAAT+AGG - Chr1:75694750-75694769 None:intergenic 30.0%
! AACCATTGTTTGGTTTAGAA+GGG + Chr1:75691343-75691362 MsG0180004260.01.T01:CDS 30.0%
! AATGAACAGATAACAGCTTT+TGG + Chr1:75693953-75693972 MsG0180004260.01.T01:intron 30.0%
! CAAGGCTTTAACAGAATTTA+TGG + Chr1:75692668-75692687 MsG0180004260.01.T01:CDS 30.0%
! CATTTTGTTCTCTTCCTAAT+AGG - Chr1:75694598-75694617 None:intergenic 30.0%
! CCATTTTAGATTTGAAGATG+AGG - Chr1:75694780-75694799 None:intergenic 30.0%
! TCATTGTTTGTCCAGATTTT+AGG + Chr1:75694193-75694212 MsG0180004260.01.T01:intron 30.0%
!! ATGATACTTTCGTTTTGGAT+AGG - Chr1:75692464-75692483 None:intergenic 30.0%
!! GCTATTTTCGTAAACTATCT+TGG + Chr1:75693918-75693937 MsG0180004260.01.T01:intron 30.0%
!! GTTTTATTAGGTTTGTTCGT+TGG + Chr1:75694107-75694126 MsG0180004260.01.T01:intron 30.0%
!! TGTGAGGAAAGTTTTTCAAA+TGG + Chr1:75692785-75692804 MsG0180004260.01.T01:CDS 30.0%
!!! CTATTTTTAGCAGTGATTTG+AGG + Chr1:75691116-75691135 MsG0180004260.01.T01:five_prime_UTR 30.0%
AAAAATTGGCACATGAGGAT+GGG - Chr1:75693420-75693439 None:intergenic 35.0%
AAAGAAAAGCTAGTGGAACT+TGG + Chr1:75692123-75692142 MsG0180004260.01.T01:CDS 35.0%
AAGCACTTGTGAGATTGTTT+GGG - Chr1:75694008-75694027 None:intergenic 35.0%
AAGGAGAATATGTAAGGCAA+TGG + Chr1:75694233-75694252 MsG0180004260.01.T01:CDS 35.0%
ACACTGAAAATTGGCTACAA+AGG - Chr1:75691202-75691221 None:intergenic 35.0%
AGATTGTTTGGGAGAGATTT+CGG - Chr1:75693997-75694016 None:intergenic 35.0%
AGTTATGTGTGGCAAAATGA+AGG - Chr1:75691888-75691907 None:intergenic 35.0%
ATCCAGAAGGAGAATATGTA+AGG + Chr1:75694227-75694246 MsG0180004260.01.T01:CDS 35.0%
ATCCCTTCTAAACCAAACAA+TGG - Chr1:75691348-75691367 None:intergenic 35.0%
ATCTCAAAAATTGGCACATG+AGG - Chr1:75693425-75693444 None:intergenic 35.0%
ATGCCTTCAAACTTGTGAAA+GGG + Chr1:75690997-75691016 MsG0180004260.01.T01:five_prime_UTR 35.0%
CAAAAGTTGAAGAATCAAGC+CGG + Chr1:75691791-75691810 MsG0180004260.01.T01:intron 35.0%
CAAACCTAGATCCTAAAATC+TGG - Chr1:75694207-75694226 None:intergenic 35.0%
CAACATCAAAGAAAAGCTAG+TGG + Chr1:75692116-75692135 MsG0180004260.01.T01:CDS 35.0%
CACACATAACTGTAAAATGC+TGG + Chr1:75691897-75691916 MsG0180004260.01.T01:intron 35.0%
CTGTATTCCCTGTGTTTATA+TGG + Chr1:75691417-75691436 MsG0180004260.01.T01:CDS 35.0%
GAGATGGTTAAACACAACTT+TGG - Chr1:75691615-75691634 None:intergenic 35.0%
GCGGTGAAGTTTAATATGAA+AGG - Chr1:75693533-75693552 None:intergenic 35.0%
GGATTCTTATTGGATGTAAC+TGG + Chr1:75691918-75691937 MsG0180004260.01.T01:intron 35.0%
GTAGCAATAGAACCATTGTT+TGG + Chr1:75691333-75691352 MsG0180004260.01.T01:CDS 35.0%
GTTATGTGTGGCAAAATGAA+GGG - Chr1:75691887-75691906 None:intergenic 35.0%
GTTGTGTTTAACCATCTCTA+TGG + Chr1:75691617-75691636 MsG0180004260.01.T01:CDS 35.0%
GTTTATATGGTGTCCTAAAG+AGG + Chr1:75691430-75691449 MsG0180004260.01.T01:CDS 35.0%
TAAGCACTTGTGAGATTGTT+TGG - Chr1:75694009-75694028 None:intergenic 35.0%
TACTTCACTACTCCAAGAAT+AGG + Chr1:75692700-75692719 MsG0180004260.01.T01:CDS 35.0%
TAGAAGGGATCTTAGAATTG+AGG + Chr1:75691358-75691377 MsG0180004260.01.T01:CDS 35.0%
TAGCAAAGTAGTATGCAAGT+TGG + Chr1:75691061-75691080 MsG0180004260.01.T01:five_prime_UTR 35.0%
TAGGACACCATATAAACACA+GGG - Chr1:75691427-75691446 None:intergenic 35.0%
TCAAGCCATATTCAAGATGT+GGG + Chr1:75694401-75694420 MsG0180004260.01.T01:intron 35.0%
TCATTCCTGCATCAACTAAA+GGG - Chr1:75693031-75693050 None:intergenic 35.0%
TCGCATAAAGCAGATATTGT+GGG + Chr1:75692809-75692828 MsG0180004260.01.T01:CDS 35.0%
TCTTGAACCAAGTGATTTCA+AGG - Chr1:75691525-75691544 None:intergenic 35.0%
TGAAAATTGGCTACAAAGGT+TGG - Chr1:75691198-75691217 None:intergenic 35.0%
TGAAGAGAAGAGAAAGAACA+AGG + Chr1:75694621-75694640 MsG0180004260.01.T01:CDS 35.0%
TGAAGCCTAAGGTAGAATAT+GGG + Chr1:75691311-75691330 MsG0180004260.01.T01:exon 35.0%
TTAGCTGAAATAGTAGCAGA+CGG - Chr1:75694532-75694551 None:intergenic 35.0%
TTAGGACACCATATAAACAC+AGG - Chr1:75691428-75691447 None:intergenic 35.0%
TTCTCATCATATACTTCCCA+AGG - Chr1:75692189-75692208 None:intergenic 35.0%
TTGAAGCCTAAGGTAGAATA+TGG + Chr1:75691310-75691329 MsG0180004260.01.T01:exon 35.0%
TTTATCAGATCCTGTTTCAC+TGG + Chr1:75692083-75692102 MsG0180004260.01.T01:intron 35.0%
TTTATCCAGGAAGAGTTTCA+AGG + Chr1:75691462-75691481 MsG0180004260.01.T01:CDS 35.0%
! AATGGGGAATGAAGTATTTC+TGG + Chr1:75693138-75693157 MsG0180004260.01.T01:CDS 35.0%
! ATACTACTTTGCTATCTGGA+AGG - Chr1:75691055-75691074 None:intergenic 35.0%
! ATGGGGAATGAAGTATTTCT+GGG + Chr1:75693139-75693158 MsG0180004260.01.T01:CDS 35.0%
! CAGCATTTTACAGTTATGTG+TGG - Chr1:75691899-75691918 None:intergenic 35.0%
! CTTCAAATCTAAAATGGCCA+TGG + Chr1:75694783-75694802 MsG0180004260.01.T01:CDS 35.0%
! GAACCATTGTTTGGTTTAGA+AGG + Chr1:75691342-75691361 MsG0180004260.01.T01:CDS 35.0%
! TGAAAATGTTGCTTCTACCT+TGG + Chr1:75693114-75693133 MsG0180004260.01.T01:CDS 35.0%
! TGGGAAGTATATGATGAGAA+GGG + Chr1:75692189-75692208 MsG0180004260.01.T01:CDS 35.0%
! TTACAACCTTCGATCCTTTT+TGG + Chr1:75692220-75692239 MsG0180004260.01.T01:CDS 35.0%
! TTGCATACTACTTTGCTATC+TGG - Chr1:75691059-75691078 None:intergenic 35.0%
! TTGGGAAGTATATGATGAGA+AGG + Chr1:75692188-75692207 MsG0180004260.01.T01:CDS 35.0%
!! CTAGCTTTTCTTTGATGTTG+TGG - Chr1:75692116-75692135 None:intergenic 35.0%
!! TCTTGTTGTGAGGATCTTTT+TGG - Chr1:75694144-75694163 None:intergenic 35.0%
!! TGGTAAGTAGTGCTGTTTAT+AGG + Chr1:75691637-75691656 MsG0180004260.01.T01:intron 35.0%
!! TTCTACATTGGTAGCTTTGT+TGG + Chr1:75692365-75692384 MsG0180004260.01.T01:intron 35.0%
!!! ATGTGCCAATTTTTGAGATC+TGG + Chr1:75693426-75693445 MsG0180004260.01.T01:intron 35.0%
!!! TGTGCCAATTTTTGAGATCT+GGG + Chr1:75693427-75693446 MsG0180004260.01.T01:intron 35.0%
!!! TTGTCCAGATTTTAGGATCT+AGG + Chr1:75694200-75694219 MsG0180004260.01.T01:intron 35.0%
AAACTTGTGAAAGGGACATG+TGG + Chr1:75691005-75691024 MsG0180004260.01.T01:five_prime_UTR 40.0%
AACTCTCCGAAATGGAGATA+CGG - Chr1:75692762-75692781 None:intergenic 40.0%
AACTTCAAGACTTGGAGACA+AGG + Chr1:75692993-75693012 MsG0180004260.01.T01:CDS 40.0%
AACTTGTGAAAGGGACATGT+GGG + Chr1:75691006-75691025 MsG0180004260.01.T01:five_prime_UTR 40.0%
AAGAATAGGCAAAAGGTTGG+TGG + Chr1:75692714-75692733 MsG0180004260.01.T01:CDS 40.0%
ACCACCCAGATCTCAAAAAT+TGG - Chr1:75693434-75693453 None:intergenic 40.0%
AGAAAAACGTGACAAACCTC+AGG - Chr1:75693263-75693282 None:intergenic 40.0%
AGCACTACTTACCATAGAGA+TGG - Chr1:75691631-75691650 None:intergenic 40.0%
ATATGGTGTCCTAAAGAGGA+AGG + Chr1:75691434-75691453 MsG0180004260.01.T01:CDS 40.0%
ATCCGTCAAACTTCAAGACT+TGG + Chr1:75692985-75693004 MsG0180004260.01.T01:CDS 40.0%
ATGCAGGAATGAGAGAACTT+TGG + Chr1:75693039-75693058 MsG0180004260.01.T01:CDS 40.0%
CAAAAATTGGCACATGAGGA+TGG - Chr1:75693421-75693440 None:intergenic 40.0%
CAGAATGTGATGTGTGATAC+AGG - Chr1:75693351-75693370 None:intergenic 40.0%
CCTCTGTCGTAAAACTTCTT+TGG - Chr1:75692404-75692423 None:intergenic 40.0%
CGCATAAAGCAGATATTGTG+GGG + Chr1:75692810-75692829 MsG0180004260.01.T01:CDS 40.0%
CTACTCCAAGAATAGGCAAA+AGG + Chr1:75692707-75692726 MsG0180004260.01.T01:CDS 40.0%
CTCAAGCCATATTCAAGATG+TGG + Chr1:75694400-75694419 MsG0180004260.01.T01:intron 40.0%
CTCATTCCTGCATCAACTAA+AGG - Chr1:75693032-75693051 None:intergenic 40.0%
CTCCAAGTCTTGAAGTTTGA+CGG - Chr1:75692990-75693009 None:intergenic 40.0%
CTCGCATAAAGCAGATATTG+TGG + Chr1:75692808-75692827 MsG0180004260.01.T01:CDS 40.0%
CTCTTAGTCCAATTGCTCTA+AGG - Chr1:75692878-75692897 None:intergenic 40.0%
CTTAGATGCATTTCCCTCTT+AGG + Chr1:75693767-75693786 MsG0180004260.01.T01:intron 40.0%
GAAGATGAGGAACATTGTTG+TGG - Chr1:75694767-75694786 None:intergenic 40.0%
GACCTTGAATGTGATATCCT+CGG + Chr1:75693179-75693198 MsG0180004260.01.T01:CDS 40.0%
GATCAGTCCTTGAAATCACT+TGG + Chr1:75691515-75691534 MsG0180004260.01.T01:CDS 40.0%
GATGCCTTCAAACTTGTGAA+AGG + Chr1:75690996-75691015 MsG0180004260.01.T01:five_prime_UTR 40.0%
GCAAAATGAAGGGTTCTCAT+CGG - Chr1:75691877-75691896 None:intergenic 40.0%
GTTGCTTCTACCTTGGAAAT+GGG + Chr1:75693121-75693140 MsG0180004260.01.T01:CDS 40.0%
TACTTCATTCCCCATTTCCA+AGG - Chr1:75693134-75693153 None:intergenic 40.0%
TATTCAAACAGGGCCTAAGA+GGG - Chr1:75693783-75693802 None:intergenic 40.0%
TCAGCAGGAATTAATTGCCA+AGG - Chr1:75692291-75692310 None:intergenic 40.0%
TCCAAAAGTTGTCCTCCTTA+AGG + Chr1:75694498-75694517 MsG0180004260.01.T01:CDS 40.0%
TCCAAGAATAGGCAAAAGGT+TGG + Chr1:75692711-75692730 MsG0180004260.01.T01:CDS 40.0%
TCCAGTAACGTTAAGCGAAA+GGG - Chr1:75691965-75691984 None:intergenic 40.0%
TCTCTTCTGCTGTGTATTAC+AGG + Chr1:75692537-75692556 MsG0180004260.01.T01:intron 40.0%
TCTTGAATATGGCTTGAGTC+AGG - Chr1:75694398-75694417 None:intergenic 40.0%
TGCAGGAATGAGAGAACTTT+GGG + Chr1:75693040-75693059 MsG0180004260.01.T01:CDS 40.0%
TGCCTTACATATTCTCCTTC+TGG - Chr1:75694232-75694251 None:intergenic 40.0%
TGCTACCCATATTCTACCTT+AGG - Chr1:75691319-75691338 None:intergenic 40.0%
TGGCAATTAATTCCTGCTGA+AGG + Chr1:75692291-75692310 MsG0180004260.01.T01:CDS 40.0%
TGTCCCTTTCACAAGTTTGA+AGG - Chr1:75691003-75691022 None:intergenic 40.0%
TTAATGTGCATACCTTCAGC+AGG - Chr1:75692306-75692325 None:intergenic 40.0%
TTATCCCCGTATCTCCATTT+CGG + Chr1:75692753-75692772 MsG0180004260.01.T01:CDS 40.0%
TTATTCAAACAGGGCCTAAG+AGG - Chr1:75693784-75693803 None:intergenic 40.0%
TTCCAGTAACGTTAAGCGAA+AGG - Chr1:75691966-75691985 None:intergenic 40.0%
TTCTTAGGATCCTGAAATGC+CGG - Chr1:75694568-75694587 None:intergenic 40.0%
TTGCTTCTACCTTGGAAATG+GGG + Chr1:75693122-75693141 MsG0180004260.01.T01:CDS 40.0%
! ACAGCTTTTGGACATGTCAT+AGG + Chr1:75693965-75693984 MsG0180004260.01.T01:intron 40.0%
! ACCAACCTTTTGCCTATTCT+TGG - Chr1:75692715-75692734 None:intergenic 40.0%
! AGAAGTTTTACGACAGAGGT+CGG + Chr1:75692405-75692424 MsG0180004260.01.T01:intron 40.0%
! AGCTAATGATCAGAAAGTGC+CGG + Chr1:75694546-75694565 MsG0180004260.01.T01:CDS 40.0%
! CCAAAGAAGTTTTACGACAG+AGG + Chr1:75692401-75692420 MsG0180004260.01.T01:intron 40.0%
! CGCTATTTACTCTTGTTGTG+AGG - Chr1:75694154-75694173 None:intergenic 40.0%
! CGGCTTGATTCTTCAACTTT+TGG - Chr1:75691793-75691812 None:intergenic 40.0%
! CTGAAGGTATGCACATTAAC+AGG + Chr1:75692307-75692326 MsG0180004260.01.T01:intron 40.0%
! GAAGCAGTCTTTAGTTCACT+TGG + Chr1:75691493-75691512 MsG0180004260.01.T01:CDS 40.0%
! GAGGAAGGACAATTTTATCC+AGG + Chr1:75691449-75691468 MsG0180004260.01.T01:CDS 40.0%
! GCTCTTTTCCTTAGAGCAAT+TGG + Chr1:75692867-75692886 MsG0180004260.01.T01:CDS 40.0%
! TCCTTAAGGAGGACAACTTT+TGG - Chr1:75694502-75694521 None:intergenic 40.0%
! TGTTGCTTCTACCTTGGAAA+TGG + Chr1:75693120-75693139 MsG0180004260.01.T01:CDS 40.0%
!!! GACACTTGAGTTTTTTCCCT+TGG + Chr1:75692955-75692974 MsG0180004260.01.T01:CDS 40.0%
AAACCAAGCAACGCGTTACT+AGG + Chr1:75692612-75692631 MsG0180004260.01.T01:CDS 45.0%
ACACTAAGTGGTGCATTCCA+AGG - Chr1:75694300-75694319 None:intergenic 45.0%
ACTCTCCGAAATGGAGATAC+GGG - Chr1:75692761-75692780 None:intergenic 45.0%
AGCCGAGGATATCACATTCA+AGG - Chr1:75693184-75693203 None:intergenic 45.0%
AGTGCTCTCTCATGAGTGAA+CGG - Chr1:75692930-75692949 None:intergenic 45.0%
ATCCAGGAAGAGTTTCAAGG+TGG + Chr1:75691465-75691484 MsG0180004260.01.T01:CDS 45.0%
ATCTCAGGATGCTTACCAGA+CGG + Chr1:75693212-75693231 MsG0180004260.01.T01:CDS 45.0%
ATGAGAGAACTTTGGGCTAC+AGG + Chr1:75693047-75693066 MsG0180004260.01.T01:CDS 45.0%
ATGGCAAGAACAGACAGACA+TGG + Chr1:75694802-75694821 MsG0180004260.01.T01:CDS 45.0%
ATGTCTGTCTGTTCTTGCCA+TGG - Chr1:75694803-75694822 None:intergenic 45.0%
ATTTCGGAGAGTTGAGTGTG+AGG + Chr1:75692769-75692788 MsG0180004260.01.T01:CDS 45.0%
CAACAGTCCCTAAGTGAGAT+TGG + Chr1:75694058-75694077 MsG0180004260.01.T01:intron 45.0%
CAAGGTGGAATAAGCGAAAC+AGG - Chr1:75692273-75692292 None:intergenic 45.0%
CAATCTCACTTAGGGACTGT+TGG - Chr1:75694060-75694079 None:intergenic 45.0%
CAGATATTGTGGGGAAACGA+AGG + Chr1:75692819-75692838 MsG0180004260.01.T01:CDS 45.0%
CCAGTAACGTTAAGCGAAAG+GGG - Chr1:75691964-75691983 None:intergenic 45.0%
CTGTAGAGCAAGTGTCTTCA+TGG - Chr1:75694693-75694712 None:intergenic 45.0%
CTGTTTCGCTTATTCCACCT+TGG + Chr1:75692271-75692290 MsG0180004260.01.T01:CDS 45.0%
GAGATGCTTGCACAAGCAAA+TGG + Chr1:75692245-75692264 MsG0180004260.01.T01:CDS 45.0%
GAGTACTCTCAATGCTCTCT+TGG + Chr1:75691565-75691584 MsG0180004260.01.T01:CDS 45.0%
GCAGGAATTAATTGCCAAGG+TGG - Chr1:75692288-75692307 None:intergenic 45.0%
GGATCTAGGTTTGATCCAGA+AGG + Chr1:75694214-75694233 MsG0180004260.01.T01:CDS 45.0%
GGATCTGTTGTATGAGCCTT+GGG + Chr1:75692170-75692189 MsG0180004260.01.T01:CDS 45.0%
TCAAGACTTGGAGACAAGGT+AGG + Chr1:75692997-75693016 MsG0180004260.01.T01:CDS 45.0%
TCACACTCAACTCTCCGAAA+TGG - Chr1:75692770-75692789 None:intergenic 45.0%
TCACTTAGGGACTGTTGGAT+TGG - Chr1:75694055-75694074 None:intergenic 45.0%
TCAGCAGCATCAAAAGCTTC+TGG + Chr1:75694428-75694447 MsG0180004260.01.T01:intron 45.0%
TCTCTGCCAAAAAGGATCGA+AGG - Chr1:75692229-75692248 None:intergenic 45.0%
TGCAAGCATCTCTGCCAAAA+AGG - Chr1:75692237-75692256 None:intergenic 45.0%
TTGAATGTGATATCCTCGGC+TGG + Chr1:75693183-75693202 MsG0180004260.01.T01:CDS 45.0%
! CTTAGTGTGCTTAGAGCATC+AGG + Chr1:75694312-75694331 MsG0180004260.01.T01:intron 45.0%
! GATGCTCTAAGCACACTAAG+TGG - Chr1:75694312-75694331 None:intergenic 45.0%
! TTGACGGATCAGCATTCCAA+GGG - Chr1:75692974-75692993 None:intergenic 45.0%
! TTTGACGGATCAGCATTCCA+AGG - Chr1:75692975-75692994 None:intergenic 45.0%
!! ACGGAGCTTTTTCCTTAAGG+AGG - Chr1:75694513-75694532 None:intergenic 45.0%
!! ACTCATGAGAGAGCACTTCT+TGG + Chr1:75692933-75692952 MsG0180004260.01.T01:CDS 45.0%
!! CAGACGGAGCTTTTTCCTTA+AGG - Chr1:75694516-75694535 None:intergenic 45.0%
!!! GCCAATTTTTGAGATCTGGG+TGG + Chr1:75693430-75693449 MsG0180004260.01.T01:intron 45.0%
!!! GTATTTCTGGGACACGCTTT+TGG + Chr1:75693151-75693170 MsG0180004260.01.T01:CDS 45.0%
AAGGCAATGGCTACCTGAGT+TGG + Chr1:75694246-75694265 MsG0180004260.01.T01:CDS 50.0%
ACAGACATGGAGCAAAGCTC+AGG + Chr1:75694815-75694834 MsG0180004260.01.T01:CDS 50.0%
ACTGAGGGATCCATCATCCT+TGG + Chr1:75694280-75694299 MsG0180004260.01.T01:CDS 50.0%
ACTTGGAGACAAGGTAGGAC+TGG + Chr1:75693002-75693021 MsG0180004260.01.T01:CDS 50.0%
CACCACCTTGAAACTCTTCC+TGG - Chr1:75691470-75691489 None:intergenic 50.0%
CAGGAAGAGTTTCAAGGTGG+TGG + Chr1:75691468-75691487 MsG0180004260.01.T01:CDS 50.0%
CCCCTTTCGCTTAACGTTAC+TGG + Chr1:75691961-75691980 MsG0180004260.01.T01:intron 50.0%
CTCTCCGAAATGGAGATACG+GGG - Chr1:75692760-75692779 None:intergenic 50.0%
GAGAACTTTGGGCTACAGGA+TGG + Chr1:75693051-75693070 MsG0180004260.01.T01:CDS 50.0%
GGAAACGAAGGCAACAGTGT+TGG + Chr1:75692831-75692850 MsG0180004260.01.T01:CDS 50.0%
GGAGCAAAGCTCAGGAAAGA+TGG + Chr1:75694823-75694842 MsG0180004260.01.T01:CDS 50.0%
GGGATCTGTTGTATGAGCCT+TGG + Chr1:75692169-75692188 MsG0180004260.01.T01:CDS 50.0%
GTGGTGCATTCCAAGGATGA+TGG - Chr1:75694293-75694312 None:intergenic 50.0%
TGGTCTCGAACCAGTGAAAC+AGG - Chr1:75692096-75692115 None:intergenic 50.0%
TGGTTGGAGCAATGCTGACA+AGG + Chr1:75692650-75692669 MsG0180004260.01.T01:CDS 50.0%
TTGGCGAGAATGCCAACTGA+GGG + Chr1:75694265-75694284 MsG0180004260.01.T01:CDS 50.0%
TTGTCAGCATTGCTCCAACC+AGG - Chr1:75692651-75692670 None:intergenic 50.0%
! GGCTACCCTTTAGTTGATGC+AGG + Chr1:75693023-75693042 MsG0180004260.01.T01:CDS 50.0%
! GGCTTGAGTCAGGTTTTCTC+TGG - Chr1:75694388-75694407 None:intergenic 50.0%
!! AAGCTTCTGGCTCTGAAGCA+AGG + Chr1:75694441-75694460 MsG0180004260.01.T01:intron 50.0%
!! AGGATGATGGATCCCTCAGT+TGG - Chr1:75694280-75694299 None:intergenic 50.0%
!! TCAGAAAGTGCCGGCATTTC+AGG + Chr1:75694555-75694574 MsG0180004260.01.T01:CDS 50.0%
!!! CATGTGGGCTGAGTTGGTTT+TGG + Chr1:75691021-75691040 MsG0180004260.01.T01:five_prime_UTR 50.0%
ACGCGTTACTAGGACGAGCA+TGG + Chr1:75692622-75692641 MsG0180004260.01.T01:CDS 55.0%
AGCACTAGCTGCTGCTGCTA+GGG + Chr1:75691388-75691407 MsG0180004260.01.T01:CDS 55.0%
ATACGGGGATAACAGCGAGG+TGG - Chr1:75692745-75692764 None:intergenic 55.0%
CGTCCTAGTAACGCGTTGCT+TGG - Chr1:75692618-75692637 None:intergenic 55.0%
CTCGGCTGGCAGTATATCTC+AGG + Chr1:75693197-75693216 MsG0180004260.01.T01:CDS 55.0%
CTGAGATATACTGCCAGCCG+AGG - Chr1:75693199-75693218 None:intergenic 55.0%
GAGATACGGGGATAACAGCG+AGG - Chr1:75692748-75692767 None:intergenic 55.0%
GTTGGCATTCTCGCCAACTC+AGG - Chr1:75694262-75694281 None:intergenic 55.0%
GTTGGCGAGAATGCCAACTG+AGG + Chr1:75694264-75694283 MsG0180004260.01.T01:CDS 55.0%
TGAGCGCTTGGATGATCCTG+AGG + Chr1:75693244-75693263 MsG0180004260.01.T01:CDS 55.0%
! AAGGGACATGTGGGCTGAGT+TGG + Chr1:75691015-75691034 MsG0180004260.01.T01:five_prime_UTR 55.0%
! AGAGCATCAGGAGTCGAGCT+AGG + Chr1:75694324-75694343 MsG0180004260.01.T01:intron 55.0%
CAGCACTAGCTGCTGCTGCT+AGG + Chr1:75691387-75691406 MsG0180004260.01.T01:CDS 60.0%
CTAGCAGCAGCAGCTAGTGC+TGG - Chr1:75691389-75691408 None:intergenic 60.0%
CTAGCTGCTGCTGCTAGGGA+TGG + Chr1:75691392-75691411 MsG0180004260.01.T01:CDS 60.0%
CTAGGACGAGCATGGTCTCC+TGG + Chr1:75692630-75692649 MsG0180004260.01.T01:CDS 60.0%
GACGAGCATGGTCTCCTGGT+TGG + Chr1:75692634-75692653 MsG0180004260.01.T01:CDS 60.0%
CGCTCAAGCTCGTGACCGTC+TGG - Chr1:75693230-75693249 None:intergenic 65.0%
CGGTCACGAGCTTGAGCGCT+TGG + Chr1:75693232-75693251 MsG0180004260.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 75690873 75694882 75690873 ID=MsG0180004260.01;Name=MsG0180004260.01
Chr1 mRNA 75690873 75694882 75690873 ID=MsG0180004260.01.T01;Parent=MsG0180004260.01;Name=MsG0180004260.01.T01;_AED=0.28;_eAED=0.29;_QI=389|0.8|0.66|1|0.8|0.66|6|0|588
Chr1 exon 75690873 75690911 75690873 ID=MsG0180004260.01.T01:exon:14629;Parent=MsG0180004260.01.T01
Chr1 exon 75690979 75691638 75690979 ID=MsG0180004260.01.T01:exon:14630;Parent=MsG0180004260.01.T01
Chr1 exon 75692091 75692312 75692091 ID=MsG0180004260.01.T01:exon:14631;Parent=MsG0180004260.01.T01
Chr1 exon 75692559 75693265 75692559 ID=MsG0180004260.01.T01:exon:14632;Parent=MsG0180004260.01.T01
Chr1 exon 75694208 75694315 75694208 ID=MsG0180004260.01.T01:exon:14633;Parent=MsG0180004260.01.T01
Chr1 exon 75694463 75694882 75694463 ID=MsG0180004260.01.T01:exon:14634;Parent=MsG0180004260.01.T01
Chr1 five_prime_UTR 75690873 75690911 75690873 ID=MsG0180004260.01.T01:five_prime_utr;Parent=MsG0180004260.01.T01
Chr1 five_prime_UTR 75690979 75691328 75690979 ID=MsG0180004260.01.T01:five_prime_utr;Parent=MsG0180004260.01.T01
Chr1 CDS 75691329 75691638 75691329 ID=MsG0180004260.01.T01:cds;Parent=MsG0180004260.01.T01
Chr1 CDS 75692091 75692312 75692091 ID=MsG0180004260.01.T01:cds;Parent=MsG0180004260.01.T01
Chr1 CDS 75692559 75693265 75692559 ID=MsG0180004260.01.T01:cds;Parent=MsG0180004260.01.T01
Chr1 CDS 75694208 75694315 75694208 ID=MsG0180004260.01.T01:cds;Parent=MsG0180004260.01.T01
Chr1 CDS 75694463 75694882 75694463 ID=MsG0180004260.01.T01:cds;Parent=MsG0180004260.01.T01
Gene Sequence

>MsG0180004260.01.T01

ATGGGTAGCAATAGAACCATTGTTTGGTTTAGAAGGGATCTTAGAATTGAGGACAATCCAGCACTAGCTGCTGCTGCTAGGGATGGTTCTGTATTCCCTGTGTTTATATGGTGTCCTAAAGAGGAAGGACAATTTTATCCAGGAAGAGTTTCAAGGTGGTGGCTGAAGCAGTCTTTAGTTCACTTGGATCAGTCCTTGAAATCACTTGGTTCAAGACTCGTGTTGATCAAAACTGAGAGTACTCTCAATGCTCTCTTGGATTGTATTAATGCTATTCAAGCTACCAAAGTTGTGTTTAACCATCTCTATGATCCTGTTTCACTGGTTCGAGACCACAACATCAAAGAAAAGCTAGTGGAACTTGGCTTATCAGTGAAAAGCTATAATGGGGATCTGTTGTATGAGCCTTGGGAAGTATATGATGAGAAGGGACATGCTTTTACAACCTTCGATCCTTTTTGGCAGAGATGCTTGCACAAGCAAATGGAACCTGTTTCGCTTATTCCACCTTGGCAATTAATTCCTGCTGAAGGAAAAGTCAAGAAATGTTCAATAGAGGATTTAGGTCTCGAAAATGAATTAGAAAAACCAAGCAACGCGTTACTAGGACGAGCATGGTCTCCTGGTTGGAGCAATGCTGACAAGGCTTTAACAGAATTTATGGACAAGCAGCTACTTCACTACTCCAAGAATAGGCAAAAGGTTGGTGGAGACTCCACCTCGCTGTTATCCCCGTATCTCCATTTCGGAGAGTTGAGTGTGAGGAAAGTTTTTCAAATGGCTCGCATAAAGCAGATATTGTGGGGAAACGAAGGCAACAGTGTTGGAGAAGAAAGTGTAGCTCTTTTCCTTAGAGCAATTGGACTAAGAGAGTACTCGCGTTATCTTTGTTTCAATTTTCCGTTCACTCATGAGAGAGCACTTCTTGGACACTTGAGTTTTTTCCCTTGGAATGCTGATCCGTCAAACTTCAAGACTTGGAGACAAGGTAGGACTGGCTACCCTTTAGTTGATGCAGGAATGAGAGAACTTTGGGCTACAGGATGGATGCATAACCGAATCAGAGTTATAGTTTCAAGTTTTGCTGTGAAAATGTTGCTTCTACCTTGGAAATGGGGAATGAAGTATTTCTGGGACACGCTTTTGGATGCAGACCTTGAATGTGATATCCTCGGCTGGCAGTATATCTCAGGATGCTTACCAGACGGTCACGAGCTTGAGCGCTTGGATGATCCTGAGATTTTAGGATCTAGGTTTGATCCAGAAGGAGAATATGTAAGGCAATGGCTACCTGAGTTGGCGAGAATGCCAACTGAGGGATCCATCATCCTTGGAATGCACCACTTAGATGAAGTTGTTGCTGAAAGTGAATATCTAGACATTCCAAAAGTTGTCCTCCTTAAGGAAAAAGCTCCGTCTGCTACTATTTCAGCTAATGATCAGAAAGTGCCGGCATTTCAGGATCCTAAGAATGAACTACCTATTAGGAAGAGAACAAAATGTTTTGAAGAGAAGAGAAAGAACAAGGAAAATTCCGTGAATCATGTGAAAGATAGTAATGTTTCAAGCTCTGACCATGAAGACACTTGCTCTACAGCTGACTCTTCACGTAAGAAGCAGTGTAGTAAGCACCTATTCATTTTCTGTTCCACAACAATGTTCCTCATCTTCAAATCTAAAATGGCCATGGCAAGAACAGACAGACATGGAGCAAAGCTCAGGAAAGATGGTAAGCGTATAAGAGTGAAGACTCATTTTAGTGCCTGA
Protein sequence

>MsG0180004260.01.T01

MGSNRTIVWFRRDLRIEDNPALAAAARDGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLVHLDQSLKSLGSRLVLIKTESTLNALLDCINAIQATKVVFNHLYDPVSLVRDHNIKEKLVELGLSVKSYNGDLLYEPWEVYDEKGHAFTTFDPFWQRCLHKQMEPVSLIPPWQLIPAEGKVKKCSIEDLGLENELEKPSNALLGRAWSPGWSNADKALTEFMDKQLLHYSKNRQKVGGDSTSLLSPYLHFGELSVRKVFQMARIKQILWGNEGNSVGEESVALFLRAIGLREYSRYLCFNFPFTHERALLGHLSFFPWNADPSNFKTWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSFAVKMLLLPWKWGMKYFWDTLLDADLECDILGWQYISGCLPDGHELERLDDPEILGSRFDPEGEYVRQWLPELARMPTEGSIILGMHHLDEVVAESEYLDIPKVVLLKEKAPSATISANDQKVPAFQDPKNELPIRKRTKCFEEKRKNKENSVNHVKDSNVSSSDHEDTCSTADSSRKKQCSKHLFIFCSTTMFLIFKSKMAMARTDRHGAKLRKDGKRIRVKTHFSA*