Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006661.01.T01 | AES63706.1 | 80.858 | 303 | 14 | 4 | 1 | 290 | 1 | 272 | 3.70E-163 | 465 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006661.01.T01 | Q53FA7 | 38.686 | 274 | 124 | 4 | 1 | 261 | 1 | 243 | 1.27E-53 | 181 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006661.01.T01 | G7ILE6 | 80.858 | 303 | 14 | 4 | 1 | 290 | 1 | 272 | 1.77e-163 | 465 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0280006661.01 | MsG0280007311.01 | 0.808263 | 3.374623e-50 | 1.920797e-47 |
| MsG0280006661.01 | MsG0280008073.01 | 0.836711 | 7.971231e-57 | 1.012837e-53 |
| MsG0280006661.01 | MsG0380014573.01 | 0.815477 | 9.061834e-52 | 6.254819e-49 |
| MsG0280006661.01 | MsG0380015720.01 | 0.807172 | 5.754969e-50 | 3.183330e-47 |
| MsG0280006661.01 | MsG0480018318.01 | 0.809758 | 1.615341e-50 | 9.565534e-48 |
| MsG0280006661.01 | MsG0480019435.01 | 0.824878 | 6.357092e-54 | 5.703164e-51 |
| MsG0280006661.01 | MsG0480021927.01 | 0.817410 | 3.345293e-52 | 2.434472e-49 |
| MsG0280006661.01 | MsG0480023202.01 | 0.808749 | 2.657950e-50 | 1.532100e-47 |
| MsG0280006661.01 | MsG0580024038.01 | 0.800001 | 1.768836e-48 | 8.145133e-46 |
| MsG0280006661.01 | MsG0580024935.01 | 0.810561 | 1.084096e-50 | 6.556186e-48 |
| MsG0280006661.01 | MsG0580025758.01 | 0.823097 | 1.664141e-53 | 1.419192e-50 |
| MsG0280006661.01 | MsG0580027773.01 | 0.811922 | 5.495269e-51 | 3.445287e-48 |
| MsG0280006661.01 | MsG0680035694.01 | 0.803287 | 3.745482e-49 | 1.874859e-46 |
| MsG0280006661.01 | MsG0780038827.01 | 0.800102 | 1.687334e-48 | 7.789842e-46 |
| MsG0280006661.01 | MsG0780041030.01 | 0.813770 | 2.163459e-51 | 1.425556e-48 |
| MsG0280006661.01 | MsG0880042031.01 | 0.813875 | 2.051403e-51 | 1.355629e-48 |
| MsG0280006661.01 | MsG0880043144.01 | 0.872769 | 2.464761e-67 | 1.043976e-63 |
| MsG0280006661.01 | MsG0880046995.01 | 0.816621 | 5.033140e-52 | 3.584279e-49 |
| MsG0280006661.01 | MsG0880047705.01 | 0.802702 | 4.948469e-49 | 2.440416e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006661.01.T01 | MTR_2g012380 | 80.858 | 303 | 14 | 4 | 1 | 290 | 1 | 272 | 4.48e-167 | 465 |
| MsG0280006661.01.T01 | MTR_4g050760 | 82.474 | 291 | 8 | 3 | 1 | 279 | 1 | 260 | 8.38e-166 | 464 |
| MsG0280006661.01.T01 | MTR_2g012380 | 82.474 | 291 | 8 | 3 | 1 | 279 | 1 | 260 | 8.38e-166 | 464 |
| MsG0280006661.01.T01 | MTR_2g012420 | 78.351 | 291 | 20 | 3 | 1 | 279 | 1 | 260 | 1.07e-154 | 436 |
| MsG0280006661.01.T01 | MTR_4g050710 | 81.553 | 206 | 7 | 2 | 74 | 279 | 9 | 183 | 5.36e-111 | 322 |
| MsG0280006661.01.T01 | MTR_2g012420 | 81.553 | 206 | 7 | 2 | 74 | 279 | 15 | 189 | 1.15e-110 | 321 |
| MsG0280006661.01.T01 | MTR_2g012420 | 77.358 | 159 | 5 | 2 | 121 | 279 | 1 | 128 | 4.51e-76 | 231 |
| MsG0280006661.01.T01 | MTR_2g012390 | 91.525 | 59 | 5 | 0 | 74 | 132 | 9 | 67 | 4.97e-30 | 109 |
| MsG0280006661.01.T01 | MTR_4g029500 | 29.655 | 290 | 157 | 6 | 1 | 276 | 52 | 308 | 6.25e-25 | 103 |
| MsG0280006661.01.T01 | MTR_4g086400 | 27.200 | 250 | 131 | 7 | 26 | 258 | 175 | 390 | 6.87e-15 | 75.1 |
| MsG0280006661.01.T01 | MTR_4g086400 | 27.490 | 251 | 129 | 8 | 26 | 258 | 315 | 530 | 8.47e-15 | 75.1 |
| MsG0280006661.01.T01 | MTR_4g086410 | 25.984 | 254 | 129 | 8 | 26 | 258 | 315 | 530 | 3.23e-13 | 70.5 |
| MsG0280006661.01.T01 | MTR_4g036310 | 27.801 | 241 | 128 | 7 | 10 | 228 | 16 | 232 | 5.45e-11 | 62.8 |
| MsG0280006661.01.T01 | MTR_3g093620 | 26.812 | 276 | 158 | 4 | 17 | 280 | 31 | 274 | 8.06e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006661.01.T01 | AT4G21580 | 62.585 | 294 | 67 | 3 | 1 | 282 | 1 | 263 | 1.50e-119 | 347 |
| MsG0280006661.01.T01 | AT4G21580 | 60.884 | 294 | 66 | 3 | 1 | 282 | 1 | 257 | 6.40e-115 | 335 |
| MsG0280006661.01.T01 | AT4G21580 | 59.387 | 261 | 63 | 3 | 34 | 282 | 1 | 230 | 1.59e-97 | 289 |
| MsG0280006661.01.T01 | AT5G61510 | 29.412 | 289 | 159 | 5 | 1 | 276 | 84 | 340 | 1.02e-23 | 100 |
| MsG0280006661.01.T01 | AT5G61510 | 28.986 | 276 | 151 | 5 | 14 | 276 | 40 | 283 | 2.19e-20 | 90.5 |
| MsG0280006661.01.T01 | AT1G23740 | 28.346 | 254 | 128 | 8 | 1 | 229 | 78 | 302 | 1.54e-14 | 73.9 |
| MsG0280006661.01.T01 | AT1G49670 | 26.316 | 247 | 129 | 7 | 28 | 258 | 317 | 526 | 5.54e-13 | 69.7 |
| MsG0280006661.01.T01 | AT3G56460 | 26.780 | 295 | 161 | 7 | 7 | 280 | 15 | 275 | 2.86e-12 | 67.0 |
Find 77 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAGATCTACGTGCTTTATT+TGG | 0.236190 | 2:-4642787 | MsG0280006661.01.T01:CDS |
| ATGAGCACTTCATTGTCTTT+AGG | 0.260405 | 2:+4644454 | None:intergenic |
| AATCATACAACTTACCAATA+AGG | 0.288330 | 2:+4643576 | None:intergenic |
| TATGACAAGCCGGCTATCTA+AGG | 0.293441 | 2:-4643605 | MsG0280006661.01.T01:CDS |
| ACTACCTGCTAAGAAATATC+TGG | 0.331477 | 2:+4643169 | None:intergenic |
| GAACGGTATCGGCACTGTTA+AGG | 0.335381 | 2:+4644413 | None:intergenic |
| TTCATCAATTCTCAGGTTCA+TGG | 0.344560 | 2:-4643383 | MsG0280006661.01.T01:intron |
| TGATGTTATTCTTGATTGTA+TGG | 0.350274 | 2:-4642899 | MsG0280006661.01.T01:CDS |
| TCTTGAAGTTGTAGAACTTC+AGG | 0.359966 | 2:+4644493 | None:intergenic |
| AACGGTATCGGCACTGTTAA+GGG | 0.374677 | 2:+4644414 | None:intergenic |
| TATCCAGGTCTTGAATGTTC+TGG | 0.375437 | 2:-4644349 | MsG0280006661.01.T01:CDS |
| ATCAAGATTTCTTTGATAGT+AGG | 0.380590 | 2:+4642870 | None:intergenic |
| TCCTGAGGGACAAGTTCTTC+CGG | 0.391442 | 2:-4643701 | MsG0280006661.01.T01:CDS |
| AGAGAAATCCCGGGTGGAAC+CGG | 0.415538 | 2:+4643682 | None:intergenic |
| ACTTCATTGTCTTTAGGTTG+AGG | 0.418079 | 2:+4644460 | None:intergenic |
| ACAGGATGTGCTCTTCTAGC+TGG | 0.433121 | 2:-4643751 | MsG0280006661.01.T01:intron |
| GTGAGTATCTAATATACAAA+AGG | 0.443810 | 2:+4642722 | None:intergenic |
| GCCTTTCCTTTGAACGGTAT+CGG | 0.446179 | 2:+4644402 | None:intergenic |
| CTTCATTGTCTTTAGGTTGA+GGG | 0.448741 | 2:+4644461 | None:intergenic |
| GGGCTTGCACCTTGAGGGAT+AGG | 0.452215 | 2:+4644373 | None:intergenic |
| TATTCCAGATATTTCTTAGC+AGG | 0.452233 | 2:-4643173 | MsG0280006661.01.T01:CDS |
| TTACAAAACAGAGGACTTTG+TGG | 0.473910 | 2:-4643096 | MsG0280006661.01.T01:CDS |
| TGTACAAGGTAATGCAGATT+CGG | 0.476746 | 2:-4642752 | MsG0280006661.01.T01:CDS |
| AGAACATTCAAGACCTGGAT+AGG | 0.477853 | 2:+4644351 | None:intergenic |
| TGCATCCTTCAGAGAAATCC+CGG | 0.479401 | 2:+4643672 | None:intergenic |
| CAAGTTCTTCCGGTTCCACC+CGG | 0.482083 | 2:-4643691 | MsG0280006661.01.T01:CDS |
| GCAAGGGTAAAGGAAGAAAC+TGG | 0.482737 | 2:-4643074 | MsG0280006661.01.T01:CDS |
| GGACTTTGTGGCAAGGGTAA+AGG | 0.486871 | 2:-4643084 | MsG0280006661.01.T01:CDS |
| GATAGGGGCTTGCACCTTGA+GGG | 0.487874 | 2:+4644368 | None:intergenic |
| TCAAGAGTATTTGTTACTGC+AGG | 0.488629 | 2:-4643308 | MsG0280006661.01.T01:CDS |
| CATGGAGGTTCAAGTGGAAT+CGG | 0.496039 | 2:-4643365 | MsG0280006661.01.T01:CDS |
| ATCGGCACTGTTAAGGGCAG+TGG | 0.498747 | 2:+4644420 | None:intergenic |
| GTAAAAGCCTTTCCTTTGAA+CGG | 0.516093 | 2:+4644396 | None:intergenic |
| TCCACCCGGGATTTCTCTGA+AGG | 0.519437 | 2:-4643677 | MsG0280006661.01.T01:CDS |
| GAACATTCAAGACCTGGATA+GGG | 0.521615 | 2:+4644352 | None:intergenic |
| ATGACAAGCCGGCTATCTAA+GGG | 0.522904 | 2:-4643604 | MsG0280006661.01.T01:CDS |
| CACTGTTAAGGGCAGTGGCA+TGG | 0.523420 | 2:+4644425 | None:intergenic |
| TGAGTATCTAATATACAAAA+GGG | 0.524361 | 2:+4642723 | None:intergenic |
| GGCAAGCGTCTCACTGTACA+AGG | 0.526294 | 2:-4642766 | MsG0280006661.01.T01:CDS |
| CAAGGTGCAAGCCCCTATCC+AGG | 0.528336 | 2:-4644364 | MsG0280006661.01.T01:CDS |
| TGAAGTTCTACAACTTCAAG+AGG | 0.532066 | 2:-4644491 | MsG0280006661.01.T01:CDS |
| GATGTTATTCTTGATTGTAT+GGG | 0.533185 | 2:-4642898 | MsG0280006661.01.T01:CDS |
| CAGGTTCATGGAGGTTCAAG+TGG | 0.534759 | 2:-4643371 | MsG0280006661.01.T01:CDS |
| ACCGGAAGAACTTGTCCCTC+AGG | 0.537543 | 2:+4643700 | None:intergenic |
| GCAGAAAACTAAACTTGAAG+AGG | 0.537879 | 2:+4642690 | None:intergenic |
| GGCTTGCACCTTGAGGGATA+GGG | 0.540973 | 2:+4644374 | None:intergenic |
| GGATAGGGGCTTGCACCTTG+AGG | 0.546687 | 2:+4644367 | None:intergenic |
| TCTGGAACTATTGAATCCGT+TGG | 0.554523 | 2:-4644331 | MsG0280006661.01.T01:intron |
| TGTGCTCTTCTAGCTGGAGG+TGG | 0.555087 | 2:-4643745 | MsG0280006661.01.T01:CDS |
| ATTATCATTGATGTGGTGGC+AGG | 0.566694 | 2:-4642925 | MsG0280006661.01.T01:CDS |
| AAGGAAGAAACTGGCGGACA+AGG | 0.566694 | 2:-4643065 | MsG0280006661.01.T01:intron |
| GCCGATACCGTTCAAAGGAA+AGG | 0.568367 | 2:-4644403 | MsG0280006661.01.T01:CDS |
| AACAGAGGACTTTGTGGCAA+GGG | 0.571801 | 2:-4643090 | MsG0280006661.01.T01:CDS |
| GGATGTGCTCTTCTAGCTGG+AGG | 0.586099 | 2:-4643748 | MsG0280006661.01.T01:CDS |
| TGTAGAACTTCAGGTCCACC+TGG | 0.592318 | 2:+4644502 | None:intergenic |
| TAATATTATCATTGATGTGG+TGG | 0.596080 | 2:-4642929 | MsG0280006661.01.T01:CDS |
| AACATTCAAGACCTGGATAG+GGG | 0.603099 | 2:+4644353 | None:intergenic |
| AAGAGTATTGGAGCTGATGT+TGG | 0.603468 | 2:-4643125 | MsG0280006661.01.T01:CDS |
| GACTTCAACAACATGAAAAG+CGG | 0.607316 | 2:+4643278 | None:intergenic |
| TAACAAATACTCTTGATCCT+CGG | 0.609699 | 2:+4643315 | None:intergenic |
| GTTCCAGAACATTCAAGACC+TGG | 0.611446 | 2:+4644346 | None:intergenic |
| ACAGTGCCGATACCGTTCAA+AGG | 0.616788 | 2:-4644408 | MsG0280006661.01.T01:CDS |
| AAGTTCTTCCGGTTCCACCC+GGG | 0.628530 | 2:-4643690 | MsG0280006661.01.T01:CDS |
| AGGTAATATTATCATTGATG+TGG | 0.639522 | 2:-4642932 | MsG0280006661.01.T01:CDS |
| TTTATTATCGGCTTTCAAGG+GGG | 0.643203 | 2:-4642823 | MsG0280006661.01.T01:CDS |
| GACAAGCCGGCTATCTAAGG+GGG | 0.645311 | 2:-4643602 | MsG0280006661.01.T01:CDS |
| GCATCCTTCAGAGAAATCCC+GGG | 0.646597 | 2:+4643673 | None:intergenic |
| ATCAATTCTCAGGTTCATGG+AGG | 0.649634 | 2:-4643380 | MsG0280006661.01.T01:intron |
| AAACAGAGGACTTTGTGGCA+AGG | 0.650379 | 2:-4643091 | MsG0280006661.01.T01:CDS |
| GCAGTTGTAATTACAACACC+AGG | 0.653000 | 2:-4644520 | MsG0280006661.01.T01:CDS |
| TGACAAGCCGGCTATCTAAG+GGG | 0.683970 | 2:-4643603 | MsG0280006661.01.T01:CDS |
| TCCTTCAGAGAAATCCCGGG+TGG | 0.700414 | 2:+4643676 | None:intergenic |
| CTGAGGTTGCATGTACTGTG+TGG | 0.713501 | 2:-4643639 | MsG0280006661.01.T01:CDS |
| TGGTATCAATTACAAAACAG+AGG | 0.714141 | 2:-4643105 | MsG0280006661.01.T01:CDS |
| ATTCAGATAGCTAAGTACCG+AGG | 0.723680 | 2:-4643332 | MsG0280006661.01.T01:CDS |
| GTTGTAATTACAACACCAGG+TGG | 0.740223 | 2:-4644517 | MsG0280006661.01.T01:CDS |
| AGGGTAAAGGAAGAAACTGG+CGG | 0.742355 | 2:-4643071 | MsG0280006661.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTCAATAATTGAATTGT+GGG | - | Chr2:4642984-4643003 | MsG0280006661.01.T01:intron | 15.0% |
| !! | TAAAAAAACAAGATATGAAT+TGG | + | Chr2:4644236-4644255 | None:intergenic | 15.0% |
| !! | TATATTCAATAATTGAATTG+TGG | - | Chr2:4642983-4643002 | MsG0280006661.01.T01:intron | 15.0% |
| !!! | TCATATCTTGTTTTTTTAAT+TGG | - | Chr2:4644238-4644257 | MsG0280006661.01.T01:intron | 15.0% |
| !! | AAGTTAATACATCAACTATT+AGG | + | Chr2:4643809-4643828 | None:intergenic | 20.0% |
| !! | AATATAAAGAAAAACCCAAT+TGG | + | Chr2:4642969-4642988 | None:intergenic | 20.0% |
| !! | ATACTATATATATGATGTTC+TGG | + | Chr2:4643048-4643067 | None:intergenic | 20.0% |
| !! | ATATAGATCATATAATGTTG+AGG | + | Chr2:4644209-4644228 | None:intergenic | 20.0% |
| !! | TGAGTATCTAATATACAAAA+GGG | + | Chr2:4644490-4644509 | None:intergenic | 20.0% |
| !!! | TTCATTCATTTTTTCCAATT+GGG | - | Chr2:4642952-4642971 | MsG0280006661.01.T01:intron | 20.0% |
| !!! | TTTCATTCATTTTTTCCAAT+TGG | - | Chr2:4642951-4642970 | MsG0280006661.01.T01:intron | 20.0% |
| ! | AATCATACAACTTACCAATA+AGG | + | Chr2:4643637-4643656 | None:intergenic | 25.0% |
| ! | ACGAAATAATAAAATAGACC+AGG | + | Chr2:4643775-4643794 | None:intergenic | 25.0% |
| ! | AGGTAATATTATCATTGATG+TGG | - | Chr2:4644278-4644297 | MsG0280006661.01.T01:intron | 25.0% |
| ! | ATTCACATCATGATTCATAT+AGG | + | Chr2:4644176-4644195 | None:intergenic | 25.0% |
| ! | CTAAAACTAGAACTAGAATA+AGG | - | Chr2:4643147-4643166 | MsG0280006661.01.T01:CDS | 25.0% |
| ! | GATGTTATTCTTGATTGTAT+GGG | - | Chr2:4644312-4644331 | MsG0280006661.01.T01:intron | 25.0% |
| ! | GTGAGTATCTAATATACAAA+AGG | + | Chr2:4644491-4644510 | None:intergenic | 25.0% |
| ! | TAATATTATCATTGATGTGG+TGG | - | Chr2:4644281-4644300 | MsG0280006661.01.T01:intron | 25.0% |
| ! | TATTAACTTCATCAATTCTC+AGG | - | Chr2:4643820-4643839 | MsG0280006661.01.T01:intron | 25.0% |
| ! | TCAGTTTCACATTAAACATA+CGG | + | Chr2:4643963-4643982 | None:intergenic | 25.0% |
| ! | TGATGTTATTCTTGATTGTA+TGG | - | Chr2:4644311-4644330 | MsG0280006661.01.T01:intron | 25.0% |
| ! | TGTTATCTTGTGATTATGAA+TGG | - | Chr2:4643409-4643428 | MsG0280006661.01.T01:intron | 25.0% |
| !! | ATCAAGATTTCTTTGATAGT+AGG | + | Chr2:4644343-4644362 | None:intergenic | 25.0% |
| !! | GTATTTTACAGAAAAGTTGT+CGG | + | Chr2:4643668-4643687 | None:intergenic | 25.0% |
| !! | TTAAGTGATGATAAGTGTTT+TGG | - | Chr2:4643193-4643212 | MsG0280006661.01.T01:intron | 25.0% |
| !!! | ATAGCTTAAATTTTGATGGA+AGG | - | Chr2:4644361-4644380 | MsG0280006661.01.T01:CDS | 25.0% |
| !!! | CTTGATAGCTTAAATTTTGA+TGG | - | Chr2:4644357-4644376 | MsG0280006661.01.T01:CDS | 25.0% |
| !!! | TTTTTATTATCGGCTTTCAA+GGG | - | Chr2:4644385-4644404 | MsG0280006661.01.T01:CDS | 25.0% |
| AACTAGAATAAGGTTCTGTT+TGG | - | Chr2:4643157-4643176 | MsG0280006661.01.T01:CDS | 30.0% | |
| ATATAATGTTGAGGAATGCT+TGG | + | Chr2:4644200-4644219 | None:intergenic | 30.0% | |
| GAGTAGGTAATTCAAATCAA+AGG | + | Chr2:4643074-4643093 | None:intergenic | 30.0% | |
| TAACAAATACTCTTGATCCT+CGG | + | Chr2:4643898-4643917 | None:intergenic | 30.0% | |
| TATTCCAGATATTTCTTAGC+AGG | - | Chr2:4644037-4644056 | MsG0280006661.01.T01:intron | 30.0% | |
| TGAATGGATATTATGATACG+AGG | - | Chr2:4643425-4643444 | MsG0280006661.01.T01:intron | 30.0% | |
| TGGTATCAATTACAAAACAG+AGG | - | Chr2:4644105-4644124 | MsG0280006661.01.T01:intron | 30.0% | |
| TGTTAATAATCAAGCTGAGT+AGG | + | Chr2:4643090-4643109 | None:intergenic | 30.0% | |
| ! | GATGGAAGGCTTTTTATTAT+CGG | - | Chr2:4644375-4644394 | MsG0280006661.01.T01:CDS | 30.0% |
| ! | TGTTCTGGTTATTATAGAAC+TGG | + | Chr2:4643033-4643052 | None:intergenic | 30.0% |
| !!! | CTTTTTATTATCGGCTTTCA+AGG | - | Chr2:4644384-4644403 | MsG0280006661.01.T01:CDS | 30.0% |
| !!! | TTTTATTATCGGCTTTCAAG+GGG | - | Chr2:4644386-4644405 | MsG0280006661.01.T01:CDS | 30.0% |
| AACACACTCATAAAGCTGTT+TGG | + | Chr2:4643393-4643412 | None:intergenic | 35.0% | |
| AACGTTTCCAACTGGAAAAT+CGG | - | Chr2:4642906-4642925 | MsG0280006661.01.T01:CDS | 35.0% | |
| ACTACCTGCTAAGAAATATC+TGG | + | Chr2:4644044-4644063 | None:intergenic | 35.0% | |
| ATATTATGATACGAGGTGTG+TGG | - | Chr2:4643432-4643451 | MsG0280006661.01.T01:intron | 35.0% | |
| ATGAGCACTTCATTGTCTTT+AGG | + | Chr2:4642759-4642778 | None:intergenic | 35.0% | |
| GACTTCAACAACATGAAAAG+CGG | + | Chr2:4643935-4643954 | None:intergenic | 35.0% | |
| GCAGAAAACTAAACTTGAAG+AGG | + | Chr2:4644523-4644542 | None:intergenic | 35.0% | |
| GTAAAAGCCTTTCCTTTGAA+CGG | + | Chr2:4642817-4642836 | None:intergenic | 35.0% | |
| GTTGGAAACGTTTATACCAA+CGG | + | Chr2:4642898-4642917 | None:intergenic | 35.0% | |
| TCACTGTATAACTATCTTCC+TGG | - | Chr2:4643754-4643773 | MsG0280006661.01.T01:intron | 35.0% | |
| TCATAAAGCTGTTTGGACTT+TGG | + | Chr2:4643386-4643405 | None:intergenic | 35.0% | |
| TCTTGAAGTTGTAGAACTTC+AGG | + | Chr2:4642720-4642739 | None:intergenic | 35.0% | |
| TCTTTGCAAGCATGGTTATT+GGG | - | Chr2:4643697-4643716 | MsG0280006661.01.T01:CDS | 35.0% | |
| TGAAGTTCTACAACTTCAAG+AGG | - | Chr2:4642719-4642738 | MsG0280006661.01.T01:CDS | 35.0% | |
| TGTACAAGGTAATGCAGATT+CGG | - | Chr2:4644458-4644477 | MsG0280006661.01.T01:CDS | 35.0% | |
| TTACAAAACAGAGGACTTTG+TGG | - | Chr2:4644114-4644133 | MsG0280006661.01.T01:intron | 35.0% | |
| TTCATCAATTCTCAGGTTCA+TGG | - | Chr2:4643827-4643846 | MsG0280006661.01.T01:intron | 35.0% | |
| TTGGTATAAACGTTTCCAAC+TGG | - | Chr2:4642898-4642917 | MsG0280006661.01.T01:CDS | 35.0% | |
| ! | GTAGATCTACGTGCTTTATT+TGG | - | Chr2:4644423-4644442 | MsG0280006661.01.T01:CDS | 35.0% |
| !! | ACTTCATTGTCTTTAGGTTG+AGG | + | Chr2:4642753-4642772 | None:intergenic | 35.0% |
| !! | CTAGCTTTTTGCAAGAGTAT+TGG | - | Chr2:4644073-4644092 | MsG0280006661.01.T01:intron | 35.0% |
| !! | CTTCATTGTCTTTAGGTTGA+GGG | + | Chr2:4642752-4642771 | None:intergenic | 35.0% |
| !! | TCAAGAGTATTTGTTACTGC+AGG | - | Chr2:4643902-4643921 | MsG0280006661.01.T01:intron | 35.0% |
| !! | TTTATTATCGGCTTTCAAGG+GGG | - | Chr2:4644387-4644406 | MsG0280006661.01.T01:CDS | 35.0% |
| AAATATCTGCCAACATCGCT+TGG | + | Chr2:4644017-4644036 | None:intergenic | 40.0% | |
| AACATTCAAGACCTGGATAG+GGG | + | Chr2:4642860-4642879 | None:intergenic | 40.0% | |
| AAGCTGTTTGGACTTTGGAT+TGG | + | Chr2:4643381-4643400 | None:intergenic | 40.0% | |
| AGAACATTCAAGACCTGGAT+AGG | + | Chr2:4642862-4642881 | None:intergenic | 40.0% | |
| ATATCATAAGCTCTGCCGAA+CGG | - | Chr2:4643314-4643333 | MsG0280006661.01.T01:CDS | 40.0% | |
| ATCAATTCTCAGGTTCATGG+AGG | - | Chr2:4643830-4643849 | MsG0280006661.01.T01:intron | 40.0% | |
| ATCTAAGGGGGAAACCTTAT+TGG | - | Chr2:4643620-4643639 | MsG0280006661.01.T01:CDS | 40.0% | |
| ATTATCATTGATGTGGTGGC+AGG | - | Chr2:4644285-4644304 | MsG0280006661.01.T01:intron | 40.0% | |
| CTCTTTGCAAGCATGGTTAT+TGG | - | Chr2:4643696-4643715 | MsG0280006661.01.T01:CDS | 40.0% | |
| CTTGAAATTCCAAGCGATGT+TGG | - | Chr2:4644005-4644024 | MsG0280006661.01.T01:intron | 40.0% | |
| GAAAAAGTAGCAGTTCCTGA+GGG | - | Chr2:4643495-4643514 | MsG0280006661.01.T01:intron | 40.0% | |
| GAACATTCAAGACCTGGATA+GGG | + | Chr2:4642861-4642880 | None:intergenic | 40.0% | |
| GCAGTTGTAATTACAACACC+AGG | - | Chr2:4642690-4642709 | MsG0280006661.01.T01:CDS | 40.0% | |
| GTTGTAATTACAACACCAGG+TGG | - | Chr2:4642693-4642712 | MsG0280006661.01.T01:CDS | 40.0% | |
| TAGCATACTCTTTGCAAGCA+TGG | - | Chr2:4643689-4643708 | MsG0280006661.01.T01:CDS | 40.0% | |
| TATCCAGGTCTTGAATGTTC+TGG | - | Chr2:4642861-4642880 | MsG0280006661.01.T01:CDS | 40.0% | |
| TGAAAAAGTAGCAGTTCCTG+AGG | - | Chr2:4643494-4643513 | MsG0280006661.01.T01:intron | 40.0% | |
| TGGTTGCTTAGAGTTGTGTT+AGG | - | Chr2:4644258-4644277 | MsG0280006661.01.T01:intron | 40.0% | |
| ! | ATTCAGATAGCTAAGTACCG+AGG | - | Chr2:4643878-4643897 | MsG0280006661.01.T01:intron | 40.0% |
| ! | CGACGATTTTTATGACAAGC+CGG | - | Chr2:4643595-4643614 | MsG0280006661.01.T01:CDS | 40.0% |
| ! | TCTGGAACTATTGAATCCGT+TGG | - | Chr2:4642879-4642898 | MsG0280006661.01.T01:CDS | 40.0% |
| !! | AAGAGTATTGGAGCTGATGT+TGG | - | Chr2:4644085-4644104 | MsG0280006661.01.T01:intron | 40.0% |
| AAACAGAGGACTTTGTGGCA+AGG | - | Chr2:4644119-4644138 | MsG0280006661.01.T01:intron | 45.0% | |
| AACAGAGGACTTTGTGGCAA+GGG | - | Chr2:4644120-4644139 | MsG0280006661.01.T01:intron | 45.0% | |
| AGGGTAAAGGAAGAAACTGG+CGG | - | Chr2:4644139-4644158 | MsG0280006661.01.T01:intron | 45.0% | |
| ATGACAAGCCGGCTATCTAA+GGG | - | Chr2:4643606-4643625 | MsG0280006661.01.T01:CDS | 45.0% | |
| CAACTGGAAAATCGGTGATC+AGG | - | Chr2:4642914-4642933 | MsG0280006661.01.T01:CDS | 45.0% | |
| CATGGAGGTTCAAGTGGAAT+CGG | - | Chr2:4643845-4643864 | MsG0280006661.01.T01:intron | 45.0% | |
| GCAAGGGTAAAGGAAGAAAC+TGG | - | Chr2:4644136-4644155 | MsG0280006661.01.T01:intron | 45.0% | |
| GCCTTTCCTTTGAACGGTAT+CGG | + | Chr2:4642811-4642830 | None:intergenic | 45.0% | |
| GTTCCAGAACATTCAAGACC+TGG | + | Chr2:4642867-4642886 | None:intergenic | 45.0% | |
| TATGACAAGCCGGCTATCTA+AGG | - | Chr2:4643605-4643624 | MsG0280006661.01.T01:CDS | 45.0% | |
| TGCATCCTTCAGAGAAATCC+CGG | + | Chr2:4643541-4643560 | None:intergenic | 45.0% | |
| !! | AACGGTATCGGCACTGTTAA+GGG | + | Chr2:4642799-4642818 | None:intergenic | 45.0% |
| !!! | CTGATCACCGATTTTCCAGT+TGG | + | Chr2:4642916-4642935 | None:intergenic | 45.0% |
| !!! | GGATGCAGCTAGTTTTACTG+AGG | - | Chr2:4643554-4643573 | MsG0280006661.01.T01:intron | 45.0% |
| ACAGGATGTGCTCTTCTAGC+TGG | - | Chr2:4643459-4643478 | MsG0280006661.01.T01:intron | 50.0% | |
| AGGTTTCCCCCTTAGATAGC+CGG | + | Chr2:4643617-4643636 | None:intergenic | 50.0% | |
| CAGGTTCATGGAGGTTCAAG+TGG | - | Chr2:4643839-4643858 | MsG0280006661.01.T01:intron | 50.0% | |
| CTGAGGTTGCATGTACTGTG+TGG | - | Chr2:4643571-4643590 | MsG0280006661.01.T01:intron | 50.0% | |
| GCATCCTTCAGAGAAATCCC+GGG | + | Chr2:4643540-4643559 | None:intergenic | 50.0% | |
| GCCGATACCGTTCAAAGGAA+AGG | - | Chr2:4642807-4642826 | MsG0280006661.01.T01:CDS | 50.0% | |
| GGACTTTGTGGCAAGGGTAA+AGG | - | Chr2:4644126-4644145 | MsG0280006661.01.T01:intron | 50.0% | |
| TCCTGAGGGACAAGTTCTTC+CGG | - | Chr2:4643509-4643528 | MsG0280006661.01.T01:intron | 50.0% | |
| TGACAAGCCGGCTATCTAAG+GGG | - | Chr2:4643607-4643626 | MsG0280006661.01.T01:CDS | 50.0% | |
| TGTAGAACTTCAGGTCCACC+TGG | + | Chr2:4642711-4642730 | None:intergenic | 50.0% | |
| ! | AAGGAAGAAACTGGCGGACA+AGG | - | Chr2:4644145-4644164 | MsG0280006661.01.T01:intron | 50.0% |
| ! | GGCTTTTACCCTATCCCTCA+AGG | - | Chr2:4642828-4642847 | MsG0280006661.01.T01:CDS | 50.0% |
| !! | ACAGTGCCGATACCGTTCAA+AGG | - | Chr2:4642802-4642821 | MsG0280006661.01.T01:CDS | 50.0% |
| !! | GAACGGTATCGGCACTGTTA+AGG | + | Chr2:4642800-4642819 | None:intergenic | 50.0% |
| !! | GCACTTCTTCTGAGACCGTT+CGG | + | Chr2:4643332-4643351 | None:intergenic | 50.0% |
| !! | TCAAGGGGGTGTTTCTACAG+TGG | - | Chr2:4644401-4644420 | MsG0280006661.01.T01:CDS | 50.0% |
| AAGTTCTTCCGGTTCCACCC+GGG | - | Chr2:4643520-4643539 | MsG0280006661.01.T01:intron | 55.0% | |
| ACCGGAAGAACTTGTCCCTC+AGG | + | Chr2:4643513-4643532 | None:intergenic | 55.0% | |
| AGAGAAATCCCGGGTGGAAC+CGG | + | Chr2:4643531-4643550 | None:intergenic | 55.0% | |
| ATCGGCACTGTTAAGGGCAG+TGG | + | Chr2:4642793-4642812 | None:intergenic | 55.0% | |
| CAAGTTCTTCCGGTTCCACC+CGG | - | Chr2:4643519-4643538 | MsG0280006661.01.T01:intron | 55.0% | |
| CACTGTTAAGGGCAGTGGCA+TGG | + | Chr2:4642788-4642807 | None:intergenic | 55.0% | |
| GACAAGCCGGCTATCTAAGG+GGG | - | Chr2:4643608-4643627 | MsG0280006661.01.T01:CDS | 55.0% | |
| GATAGGGGCTTGCACCTTGA+GGG | + | Chr2:4642845-4642864 | None:intergenic | 55.0% | |
| GGCAAGCGTCTCACTGTACA+AGG | - | Chr2:4644444-4644463 | MsG0280006661.01.T01:CDS | 55.0% | |
| GGCTTGCACCTTGAGGGATA+GGG | + | Chr2:4642839-4642858 | None:intergenic | 55.0% | |
| TACGAGGTGTGTGGCTTCAC+AGG | - | Chr2:4643441-4643460 | MsG0280006661.01.T01:intron | 55.0% | |
| TCCACCCGGGATTTCTCTGA+AGG | - | Chr2:4643533-4643552 | MsG0280006661.01.T01:intron | 55.0% | |
| TCCTTCAGAGAAATCCCGGG+TGG | + | Chr2:4643537-4643556 | None:intergenic | 55.0% | |
| ! | GGATGTGCTCTTCTAGCTGG+AGG | - | Chr2:4643462-4643481 | MsG0280006661.01.T01:intron | 55.0% |
| ! | TGTGCTCTTCTAGCTGGAGG+TGG | - | Chr2:4643465-4643484 | MsG0280006661.01.T01:intron | 55.0% |
| CAAGGTGCAAGCCCCTATCC+AGG | - | Chr2:4642846-4642865 | MsG0280006661.01.T01:CDS | 60.0% | |
| GGATAGGGGCTTGCACCTTG+AGG | + | Chr2:4642846-4642865 | None:intergenic | 60.0% | |
| GGGCTTGCACCTTGAGGGAT+AGG | + | Chr2:4642840-4642859 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 4642684 | 4644548 | 4642684 | ID=MsG0280006661.01;Name=MsG0280006661.01 |
| Chr2 | mRNA | 4642684 | 4644548 | 4642684 | ID=MsG0280006661.01.T01;Parent=MsG0280006661.01;Name=MsG0280006661.01.T01;_AED=0.50;_eAED=0.56;_QI=0|0|0|1|1|1|5|0|306 |
| Chr2 | exon | 4644332 | 4644548 | 4644332 | ID=MsG0280006661.01.T01:exon:1707;Parent=MsG0280006661.01.T01 |
| Chr2 | exon | 4643591 | 4643769 | 4643591 | ID=MsG0280006661.01.T01:exon:1706;Parent=MsG0280006661.01.T01 |
| Chr2 | exon | 4643271 | 4643390 | 4643271 | ID=MsG0280006661.01.T01:exon:1705;Parent=MsG0280006661.01.T01 |
| Chr2 | exon | 4643066 | 4643201 | 4643066 | ID=MsG0280006661.01.T01:exon:1704;Parent=MsG0280006661.01.T01 |
| Chr2 | exon | 4642684 | 4642952 | 4642684 | ID=MsG0280006661.01.T01:exon:1703;Parent=MsG0280006661.01.T01 |
| Chr2 | CDS | 4644332 | 4644548 | 4644332 | ID=MsG0280006661.01.T01:cds;Parent=MsG0280006661.01.T01 |
| Chr2 | CDS | 4643591 | 4643769 | 4643591 | ID=MsG0280006661.01.T01:cds;Parent=MsG0280006661.01.T01 |
| Chr2 | CDS | 4643271 | 4643390 | 4643271 | ID=MsG0280006661.01.T01:cds;Parent=MsG0280006661.01.T01 |
| Chr2 | CDS | 4643066 | 4643201 | 4643066 | ID=MsG0280006661.01.T01:cds;Parent=MsG0280006661.01.T01 |
| Chr2 | CDS | 4642684 | 4642952 | 4642684 | ID=MsG0280006661.01.T01:cds;Parent=MsG0280006661.01.T01 |
| Gene Sequence |
| Protein sequence |
