AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007311.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007311.01.T01 MTR_7g115690 88.462 130 6 1 1 130 238 358 1.91e-76 230
MsG0280007311.01.T01 MTR_1g080250 65.385 130 33 2 1 130 238 355 2.06e-46 153
MsG0280007311.01.T01 MTR_1g080250 65.385 130 33 2 1 130 253 370 2.27e-46 154
MsG0280007311.01.T01 MTR_1g080250 65.385 130 33 2 1 130 279 396 3.23e-46 154
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007311.01.T01 AT1G08630 57.025 121 43 2 1 121 219 330 1.50e-41 140
MsG0280007311.01.T01 AT1G08630 57.025 121 43 2 1 121 238 349 1.96e-41 140
MsG0280007311.01.T01 AT1G08630 57.025 121 43 2 1 121 238 349 1.96e-41 140
MsG0280007311.01.T01 AT1G08630 57.025 121 43 2 1 121 238 349 1.96e-41 140
MsG0280007311.01.T01 AT1G08630 57.025 121 43 2 1 121 238 349 1.96e-41 140
MsG0280007311.01.T01 AT1G08630 57.025 121 43 2 1 121 238 349 1.96e-41 140
MsG0280007311.01.T01 AT3G04520 56.303 119 43 2 1 119 242 351 3.50e-40 137
MsG0280007311.01.T01 AT3G04520 56.303 119 43 2 1 119 242 351 3.50e-40 137
MsG0280007311.01.T01 AT3G04520 56.303 119 42 3 1 119 242 350 3.15e-38 132
MsG0280007311.01.T01 AT1G08630 51.240 121 36 3 1 121 238 335 4.38e-31 113

Find 95 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAACAATGAAGTGCTTTA+TGG 0.169459 2:+13378437 MsG0280007311.01.T01:three_prime_UTR
ATACACTTTGTCGTGCTTTC+AGG 0.173516 2:+13378131 MsG0280007311.01.T01:CDS
CTACAAAATACTTACAATAT+TGG 0.205905 2:-13377758 None:intergenic
TCATTATTTCTAACTGTTCT+TGG 0.215838 2:-13375798 None:intergenic
TTCAGTTGTGTGAATAAGTA+TGG 0.256450 2:+13378329 MsG0280007311.01.T01:three_prime_UTR
GCACATCGCTATCTGATATT+TGG 0.274562 2:-13378107 None:intergenic
TTTGTAACACAAATAAAATA+TGG 0.289486 2:+13378365 MsG0280007311.01.T01:three_prime_UTR
TTAAATCAAGCAGACCAATT+TGG 0.289912 2:-13374806 None:intergenic
ATTGAAATTGAAGAGAATTC+AGG 0.311218 2:+13377872 MsG0280007311.01.T01:CDS
CAACCACAAGGCTCATTGTT+TGG 0.323585 2:+13375888 MsG0280007311.01.T01:five_prime_UTR
GCCGGAGGACCAAATGAAAA+TGG 0.327784 2:+13378253 MsG0280007311.01.T01:CDS
GGATAAACAAGCTCCCCTTT+TGG 0.339653 2:-13375866 None:intergenic
CATATTCATATTTATGAGAA+TGG 0.341156 2:+13375748 MsG0280007311.01.T01:five_prime_UTR
TCCAAGGACTTAGAAGAATA+TGG 0.358787 2:+13377914 MsG0280007311.01.T01:CDS
CAATGCATTTCAGTCCAAAT+TGG 0.362325 2:+13374792 None:intergenic
TCTTATCGTATCAGTTTCAT+TGG 0.382501 2:+13378045 MsG0280007311.01.T01:intron
GAAGAGATGGCAAAGATAAC+TGG 0.383719 2:+13375621 MsG0280007311.01.T01:five_prime_UTR
GGATTGAAGCTTCACATTGA+TGG 0.392047 2:+13376487 MsG0280007311.01.T01:five_prime_UTR
ATGTTGCAGCGTGCGGTTGC+CGG 0.393302 2:+13378235 MsG0280007311.01.T01:intron
GCCATATTCTTCTAAGTCCT+TGG 0.397824 2:-13377915 None:intergenic
AGAGGGAGTGAAGTAATTCT+TGG 0.400194 2:+13375715 MsG0280007311.01.T01:five_prime_UTR
TTGTGTTACTTGCAATTTGT+TGG 0.405419 2:+13374869 MsG0280007311.01.T01:five_prime_UTR
CATTGTTTGGAAAATTCTCA+TGG 0.425229 2:+13375901 MsG0280007311.01.T01:five_prime_UTR
GTTTGCTTATCTAAAGGTAT+TGG 0.427009 2:+13377118 MsG0280007311.01.T01:five_prime_UTR
TCCTTGGATAGCTTTGCTGC+TGG 0.432710 2:-13377899 None:intergenic
TTTGTCCCATCAGGCACTAT+GGG 0.437944 2:+13375659 MsG0280007311.01.T01:five_prime_UTR
CCAGTTGGATCTGTAATTGT+TGG 0.446162 2:+13377145 MsG0280007311.01.T01:five_prime_UTR
TTGCAATTTGTTGGAATACA+AGG 0.451664 2:+13374878 MsG0280007311.01.T01:five_prime_UTR
GATTAGGTTTGCTTATCTAA+AGG 0.460763 2:+13377112 MsG0280007311.01.T01:intron
TTCTTGGATGTCACCTCCAA+GGG 0.462572 2:-13375782 None:intergenic
TGTGTTACAAACAAAACAAA+AGG 0.466316 2:-13378353 None:intergenic
GAGGTCGATGATGATGTTCT+TGG 0.472967 2:+13375571 MsG0280007311.01.T01:five_prime_UTR
CAGTGAACAAGCACAGATAA+AGG 0.472992 2:-13375685 None:intergenic
TTCTCTAAGCGTAAACAAGA+AGG 0.475512 2:-13375601 None:intergenic
AGTTGAATATACAGAAGAGT+TGG 0.481145 2:+13376445 MsG0280007311.01.T01:five_prime_UTR
ACAGTTAGAAATAATGAAGA+TGG 0.487457 2:+13375804 MsG0280007311.01.T01:five_prime_UTR
TAACTAGGACAGTGGATCTT+CGG 0.488854 2:+13375494 MsG0280007311.01.T01:five_prime_UTR
TGAAACAATGCGAGTTGCTA+TGG 0.491610 2:+13375540 MsG0280007311.01.T01:five_prime_UTR
TACCTTGGTTATAAAGCTGT+TGG 0.496036 2:-13377170 None:intergenic
AATGGAGGCATTGCAACCCT+TGG 0.505718 2:+13375766 MsG0280007311.01.T01:five_prime_UTR
CTTGTTCACTGCGACATAAG+AGG 0.507878 2:+13375697 MsG0280007311.01.T01:five_prime_UTR
GGAGGCATTGCAACCCTTGG+AGG 0.509812 2:+13375769 MsG0280007311.01.T01:five_prime_UTR
CTGTCTCATTCCACCACCTA+AGG 0.510563 2:-13377307 None:intergenic
GGCATCCTTCTCATGCCAAT+CGG 0.513035 2:+13377935 MsG0280007311.01.T01:CDS
CCTCAATCAAATCAATATCC+AGG 0.514229 2:-13375829 None:intergenic
CGCTATCTGATATTTGGTGG+TGG 0.515490 2:-13378101 None:intergenic
CCTGGATATTGATTTGATTG+AGG 0.517743 2:+13375829 MsG0280007311.01.T01:five_prime_UTR
GCAACTCGCATTGTTTCAGT+TGG 0.519214 2:-13375535 None:intergenic
CCAACAATTACAGATCCAAC+TGG 0.520070 2:-13377145 None:intergenic
CAAAATGGTAACTAGGACAG+TGG 0.520303 2:+13375486 MsG0280007311.01.T01:five_prime_UTR
CTGCAATTAGAGATCCAAAA+GGG 0.526811 2:+13375852 MsG0280007311.01.T01:five_prime_UTR
CACTTGGTGTTCCTGTGGAT+AGG 0.527788 2:+13376644 MsG0280007311.01.T01:five_prime_UTR
AGAAGGCTCAGAAAGACCTT+AGG 0.529362 2:+13377291 MsG0280007311.01.T01:five_prime_UTR
CATCGCTATCTGATATTTGG+TGG 0.529995 2:-13378104 None:intergenic
GTTCTTGGATGTCACCTCCA+AGG 0.531293 2:-13375783 None:intergenic
CTTAGGTGGTGGAATGAGAC+AGG 0.531990 2:+13377308 MsG0280007311.01.T01:exon
TCAGGCACTTGGTGTTCCTG+TGG 0.542119 2:+13376639 MsG0280007311.01.T01:intron
TTGCAGACAAAATGGTAACT+AGG 0.544552 2:+13375479 MsG0280007311.01.T01:intron
GTTTACGCTTAGAGAAGAGA+TGG 0.553820 2:+13375608 MsG0280007311.01.T01:five_prime_UTR
CTCAGAAAGACCTTAGGTGG+TGG 0.554851 2:+13377297 MsG0280007311.01.T01:five_prime_UTR
TGAAATCAAAGGACTGAGAG+TGG 0.556209 2:+13377717 MsG0280007311.01.T01:CDS
AAAGGTATTGGTGCTCCAGT+TGG 0.559792 2:+13377130 MsG0280007311.01.T01:five_prime_UTR
AATATTGGTTTCCACAGAAG+AGG 0.561141 2:-13377743 None:intergenic
GGTTCCCCATAGTGCCTGAT+GGG 0.562284 2:-13375664 None:intergenic
TTGCAGCGTGCGGTTGCCGG+AGG 0.565456 2:+13378238 MsG0280007311.01.T01:intron
GATGGATTGAATGAAATCAA+AGG 0.567749 2:+13377706 MsG0280007311.01.T01:intron
AGGTTCCCCATAGTGCCTGA+TGG 0.569347 2:-13375665 None:intergenic
CTTCTGTATATTCAACTGAA+AGG 0.571062 2:-13376439 None:intergenic
AACTGAAAGGCATCTACCAC+CGG 0.571112 2:-13376426 None:intergenic
CAAACAATGAGCCTTGTGGT+TGG 0.572352 2:-13375887 None:intergenic
GAAATAATGAAGATGGAACC+TGG 0.574491 2:+13375811 MsG0280007311.01.T01:five_prime_UTR
TCATGCCAATCGGATCATCA+AGG 0.575646 2:+13377945 MsG0280007311.01.T01:CDS
GGTGGTGGAATGAGACAGGT+TGG 0.583127 2:+13377312 MsG0280007311.01.T01:exon
AGCGTAAACAAGAAGGGTCG+CGG 0.584966 2:-13375594 None:intergenic
TTCCAACAGCTTTATAACCA+AGG 0.590972 2:+13377168 MsG0280007311.01.T01:five_prime_UTR
GCTGCAATTAGAGATCCAAA+AGG 0.591600 2:+13375851 MsG0280007311.01.T01:five_prime_UTR
GGAGAGGTTGCTAAGAAGCA+CGG 0.596469 2:+13376466 MsG0280007311.01.T01:five_prime_UTR
CAAGACCTTGATGATCCGAT+TGG 0.596889 2:-13377950 None:intergenic
ATTCATATTTATGAGAATGG+AGG 0.597452 2:+13375751 MsG0280007311.01.T01:five_prime_UTR
AATATACAGAAGAGTTGGAG+AGG 0.603649 2:+13376450 MsG0280007311.01.T01:five_prime_UTR
TTGTTCACTGCGACATAAGA+GGG 0.608669 2:+13375698 MsG0280007311.01.T01:five_prime_UTR
TGTGGATAGGCTTGTTCGAG+CGG 0.608773 2:+13376657 MsG0280007311.01.T01:five_prime_UTR
TCCAGCAGCAAAGCTATCCA+AGG 0.609285 2:+13377898 MsG0280007311.01.T01:CDS
TCTCTAAGCGTAAACAAGAA+GGG 0.610570 2:-13375600 None:intergenic
AGGCTCAGAAAGACCTTAGG+TGG 0.612425 2:+13377294 MsG0280007311.01.T01:five_prime_UTR
TTTCCTGAATGCAGCACCGG+TGG 0.617194 2:+13376410 MsG0280007311.01.T01:intron
TTTCCAAACAATGAGCCTTG+TGG 0.618390 2:-13375891 None:intergenic
GAGAGTGGATACCTCTTCTG+TGG 0.618793 2:+13377732 MsG0280007311.01.T01:CDS
GCTCGAACAAGCCTATCCAC+AGG 0.622305 2:-13376655 None:intergenic
ATGATCCGATTGGCATGAGA+AGG 0.633762 2:-13377940 None:intergenic
CAACAAGTGCAGCTGCACAA+AGG 0.642170 2:-13377338 None:intergenic
AGCTTGTTTATCCAACCACA+AGG 0.653076 2:+13375876 MsG0280007311.01.T01:five_prime_UTR
TTGTCCCATCAGGCACTATG+GGG 0.654369 2:+13375660 MsG0280007311.01.T01:five_prime_UTR
AGTTGCTATGGCAAACGCTG+AGG 0.668418 2:+13375552 MsG0280007311.01.T01:five_prime_UTR
TGCAATTAGAGATCCAAAAG+GGG 0.670578 2:+13375853 MsG0280007311.01.T01:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAACTTTACATTATTAAAA+AGG - Chr2:13376326-13376345 None:intergenic 10.0%
!! TTAATACTATAATAATAAGT+TGG + Chr2:13375001-13375020 MsG0280007311.01.T01:intron 10.0%
!! CTTTGAATATATATATGATT+AGG + Chr2:13377096-13377115 MsG0280007311.01.T01:intron 15.0%
!! GAGTAAATTACTTTAATAAA+AGG - Chr2:13378018-13378037 None:intergenic 15.0%
!! TTTGTAACACAAATAAAATA+TGG + Chr2:13378365-13378384 MsG0280007311.01.T01:three_prime_UTR 15.0%
!!! ACTAATTCATTTTATAACTA+AGG + Chr2:13376271-13376290 MsG0280007311.01.T01:intron 15.0%
!!! TATATTTCTTTTCTTTTTCT+TGG + Chr2:13378182-13378201 MsG0280007311.01.T01:intron 15.0%
!! AAGACCTGAATATAATTTAA+AGG + Chr2:13375346-13375365 MsG0280007311.01.T01:intron 20.0%
!! AATTAGTTGGATATAGTTAA+AGG + Chr2:13374964-13374983 MsG0280007311.01.T01:intron 20.0%
!! ACTACCTTTAAATTATATTC+AGG - Chr2:13375353-13375372 None:intergenic 20.0%
!! AGTTAGAGGAAAAAATTTAA+AGG - Chr2:13377677-13377696 None:intergenic 20.0%
!! ATGTCAATACTTATTCTTAT+TGG + Chr2:13376938-13376957 MsG0280007311.01.T01:intron 20.0%
!! ATTACCAAATTCAAATCAAA+AGG + Chr2:13377044-13377063 MsG0280007311.01.T01:intron 20.0%
!! CATATTCATATTTATGAGAA+TGG + Chr2:13375748-13375767 MsG0280007311.01.T01:five_prime_UTR 20.0%
!! CTACAAAATACTTACAATAT+TGG - Chr2:13377761-13377780 None:intergenic 20.0%
!! CTTCAATTTCAATATATATC+TGG - Chr2:13377865-13377884 None:intergenic 20.0%
!! GAGGTTTAATCATAATTTAT+CGG + Chr2:13378398-13378417 MsG0280007311.01.T01:intron 20.0%
!! GTTAGAGGAAAAAATTTAAA+GGG - Chr2:13377676-13377695 None:intergenic 20.0%
!! TGAATATAATTTAAAGGTAG+TGG + Chr2:13375352-13375371 MsG0280007311.01.T01:intron 20.0%
!! TGTGTAGAAAATGTAAATAA+TGG - Chr2:13376164-13376183 None:intergenic 20.0%
!!! ATAACCTTTTGATTTGAATT+TGG - Chr2:13377051-13377070 None:intergenic 20.0%
!!! ATTATTATCAGTTTTGTGTT+TGG - Chr2:13377472-13377491 None:intergenic 20.0%
!!! GTATGTATATATGCTATTTT+AGG + Chr2:13377266-13377285 MsG0280007311.01.T01:intron 20.0%
!!! TTTTGTTATAAGCTTTAAGT+TGG + Chr2:13375181-13375200 MsG0280007311.01.T01:intron 20.0%
!!! TTTTTGTGTCTTTATTTGAT+AGG - Chr2:13377445-13377464 None:intergenic 20.0%
! AAAGTTAAGAATTCCTTCAA+TGG + Chr2:13376338-13376357 MsG0280007311.01.T01:intron 25.0%
! ACAGTTAGAAATAATGAAGA+TGG + Chr2:13375804-13375823 MsG0280007311.01.T01:five_prime_UTR 25.0%
! ACTAGTATGAATGAAATGAA+TGG - Chr2:13377787-13377806 None:intergenic 25.0%
! ATAATATAGACAACCATTGA+AGG - Chr2:13376354-13376373 None:intergenic 25.0%
! ATGTTCCATAGTTAGAAAAA+AGG + Chr2:13376760-13376779 MsG0280007311.01.T01:intron 25.0%
! ATTCATATTTATGAGAATGG+AGG + Chr2:13375751-13375770 MsG0280007311.01.T01:five_prime_UTR 25.0%
! ATTGAAATTGAAGAGAATTC+AGG + Chr2:13377872-13377891 MsG0280007311.01.T01:CDS 25.0%
! ATTTCATTCAATCCATCTAA+AGG - Chr2:13377703-13377722 None:intergenic 25.0%
! GAAATATATACAGCAAAACA+AGG - Chr2:13378170-13378189 None:intergenic 25.0%
! GTTTATATATACATGATAGC+AGG - Chr2:13376593-13376612 None:intergenic 25.0%
! TATTCAAAGTAATCACAAGT+TGG - Chr2:13377085-13377104 None:intergenic 25.0%
! TCATTTATAACCACATTTGT+TGG + Chr2:13377512-13377531 MsG0280007311.01.T01:intron 25.0%
! TCTAGTTAAATTTGGAGAAT+TGG + Chr2:13375418-13375437 MsG0280007311.01.T01:intron 25.0%
! TGTGTTACAAACAAAACAAA+AGG - Chr2:13378356-13378375 None:intergenic 25.0%
!! AATTGCTAACTTGATTTGAT+CGG + Chr2:13375393-13375412 MsG0280007311.01.T01:intron 25.0%
!! TTCTTTTACCTTCTCTTTAT+TGG + Chr2:13376703-13376722 MsG0280007311.01.T01:intron 25.0%
!! TTTTCATAAGCTAAGAACTA+TGG + Chr2:13375239-13375258 MsG0280007311.01.T01:intron 25.0%
!!! AACATCCTTTTTTCTAACTA+TGG - Chr2:13376768-13376787 None:intergenic 25.0%
!!! ACAGAAAATTTTGGTTTTTC+AGG + Chr2:13376621-13376640 MsG0280007311.01.T01:intron 25.0%
!!! ATAACGATTTTGAAATACCT+TGG - Chr2:13377188-13377207 None:intergenic 25.0%
!!! TCATTATTTCTAACTGTTCT+TGG - Chr2:13375801-13375820 None:intergenic 25.0%
!!! TTTTTTTTTTAAACCGCACA+TGG - Chr2:13375123-13375142 None:intergenic 25.0%
AAAATATGGAGCATAGTAAG+AGG + Chr2:13378379-13378398 MsG0280007311.01.T01:intron 30.0%
AACGAACTAAGAAGTTTAAG+AGG - Chr2:13374913-13374932 None:intergenic 30.0%
AAGTACAGTAAAAACATGCT+AGG - Chr2:13376141-13376160 None:intergenic 30.0%
AATCATGTCCAATAAAGAGA+AGG - Chr2:13376714-13376733 None:intergenic 30.0%
AGTTGAATATACAGAAGAGT+TGG + Chr2:13376445-13376464 MsG0280007311.01.T01:five_prime_UTR 30.0%
CAACATTGTAAAGAACATAC+CGG - Chr2:13377421-13377440 None:intergenic 30.0%
CAACATTTAGTATAGTGTCA+TGG + Chr2:13376993-13377012 MsG0280007311.01.T01:intron 30.0%
CATGACACTATACTAAATGT+TGG - Chr2:13376995-13377014 None:intergenic 30.0%
CATTGTTTGGAAAATTCTCA+TGG + Chr2:13375901-13375920 MsG0280007311.01.T01:five_prime_UTR 30.0%
CTATCGCTGAAATAATAGAA+AGG + Chr2:13376001-13376020 MsG0280007311.01.T01:intron 30.0%
CTTCTGTATATTCAACTGAA+AGG - Chr2:13376442-13376461 None:intergenic 30.0%
GGTGTTAAGTAGATGTTAAT+TGG + Chr2:13377597-13377616 MsG0280007311.01.T01:intron 30.0%
TCTTATCGTATCAGTTTCAT+TGG + Chr2:13378045-13378064 MsG0280007311.01.T01:intron 30.0%
TCTTTATTGGACATGATTCT+TGG + Chr2:13376716-13376735 MsG0280007311.01.T01:intron 30.0%
TGAAATTGTGATATACTTGC+TGG + Chr2:13376813-13376832 MsG0280007311.01.T01:intron 30.0%
TGATAGACTATGATACATCA+TGG - Chr2:13375285-13375304 None:intergenic 30.0%
TTAAATCAAGCAGACCAATT+TGG - Chr2:13374809-13374828 None:intergenic 30.0%
TTCAGTTGTGTGAATAAGTA+TGG + Chr2:13378329-13378348 MsG0280007311.01.T01:three_prime_UTR 30.0%
! CAACTCATGACAGAAAATTT+TGG + Chr2:13376612-13376631 MsG0280007311.01.T01:intron 30.0%
! GATTAGGTTTGCTTATCTAA+AGG + Chr2:13377112-13377131 MsG0280007311.01.T01:intron 30.0%
! GTTTGCTTATCTAAAGGTAT+TGG + Chr2:13377118-13377137 MsG0280007311.01.T01:five_prime_UTR 30.0%
! TCACAAGAATGCTAGATTTT+TGG + Chr2:13377395-13377414 MsG0280007311.01.T01:CDS 30.0%
! TCACTCTAGTAATGTTTTGT+TGG + Chr2:13375951-13375970 MsG0280007311.01.T01:intron 30.0%
! TTTTATAGCCCTTCATTCAA+AGG - Chr2:13376213-13376232 None:intergenic 30.0%
!! AGCTAGTTTCCATTTTCATT+TGG - Chr2:13378265-13378284 None:intergenic 30.0%
!! CTAGTAATGTTTTGTTGGAT+CGG + Chr2:13375956-13375975 MsG0280007311.01.T01:intron 30.0%
!! GATCGGTTTCTAGTTAAATT+TGG + Chr2:13375410-13375429 MsG0280007311.01.T01:intron 30.0%
!! GATGGATTGAATGAAATCAA+AGG + Chr2:13377706-13377725 MsG0280007311.01.T01:intron 30.0%
!! TTGCAATTTGTTGGAATACA+AGG + Chr2:13374878-13374897 MsG0280007311.01.T01:five_prime_UTR 30.0%
!! TTGTGTTACTTGCAATTTGT+TGG + Chr2:13374869-13374888 MsG0280007311.01.T01:five_prime_UTR 30.0%
!!! ATATGCTATTTTAGGCTAGA+AGG + Chr2:13377274-13377293 MsG0280007311.01.T01:intron 30.0%
!!! TGTTTTAGTTGCAGACAAAA+TGG + Chr2:13375471-13375490 MsG0280007311.01.T01:intron 30.0%
AATATACAGAAGAGTTGGAG+AGG + Chr2:13376450-13376469 MsG0280007311.01.T01:five_prime_UTR 35.0%
ACAACAAACACCAACAAATG+TGG - Chr2:13377525-13377544 None:intergenic 35.0%
ACGATATTTGTTCACGAGTT+CGG - Chr2:13376066-13376085 None:intergenic 35.0%
ACTAATTCTAGCAGAATCAG+TGG - Chr2:13374951-13374970 None:intergenic 35.0%
CCTCAATCAAATCAATATCC+AGG - Chr2:13375832-13375851 None:intergenic 35.0%
CTGATTCTGCTAGAATTAGT+TGG + Chr2:13374951-13374970 MsG0280007311.01.T01:intron 35.0%
CTGCAATTAGAGATCCAAAA+GGG + Chr2:13375852-13375871 MsG0280007311.01.T01:five_prime_UTR 35.0%
GAAATAATGAAGATGGAACC+TGG + Chr2:13375811-13375830 MsG0280007311.01.T01:five_prime_UTR 35.0%
GGCTCATAGTTACTGATAAA+TGG + Chr2:13375977-13375996 MsG0280007311.01.T01:intron 35.0%
TACCTTGGTTATAAAGCTGT+TGG - Chr2:13377173-13377192 None:intergenic 35.0%
TCCAAGGACTTAGAAGAATA+TGG + Chr2:13377914-13377933 MsG0280007311.01.T01:CDS 35.0%
TCTCTAAGCGTAAACAAGAA+GGG - Chr2:13375603-13375622 None:intergenic 35.0%
TGCAATTAGAGATCCAAAAG+GGG + Chr2:13375853-13375872 MsG0280007311.01.T01:five_prime_UTR 35.0%
TTCTAACCAAGAAACATCTC+AGG - Chr2:13376842-13376861 None:intergenic 35.0%
TTCTCTAAGCGTAAACAAGA+AGG - Chr2:13375604-13375623 None:intergenic 35.0%
TTGCAGACAAAATGGTAACT+AGG + Chr2:13375479-13375498 MsG0280007311.01.T01:intron 35.0%
! GTCATGGCAATGACAATTTT+AGG + Chr2:13377009-13377028 MsG0280007311.01.T01:intron 35.0%
! GTGAACAATGAAGTGCTTTA+TGG + Chr2:13378437-13378456 MsG0280007311.01.T01:three_prime_UTR 35.0%
! TCGTGTGCTCTTTGTATTTT+CGG + Chr2:13376082-13376101 MsG0280007311.01.T01:intron 35.0%
! TTCCAACAGCTTTATAACCA+AGG + Chr2:13377168-13377187 MsG0280007311.01.T01:five_prime_UTR 35.0%
! TTCTTCAACCTTGAAGTACT+CGG + Chr2:13376867-13376886 MsG0280007311.01.T01:intron 35.0%
!! AATATTGGTTTCCACAGAAG+AGG - Chr2:13377746-13377765 None:intergenic 35.0%
!! CAGCTTTGAGTTCTTTAATC+TGG + Chr2:13376565-13376584 MsG0280007311.01.T01:intron 35.0%
!! CCTGGATATTGATTTGATTG+AGG + Chr2:13375829-13375848 MsG0280007311.01.T01:five_prime_UTR 35.0%
!! TTGTTGGTGTTTGTTGTTCT+CGG + Chr2:13377528-13377547 MsG0280007311.01.T01:intron 35.0%
!!! AAGAATGCTAGATTTTTGGC+CGG + Chr2:13377399-13377418 MsG0280007311.01.T01:CDS 35.0%
!!! ATTTTGGTTTTTCAGGCACT+TGG + Chr2:13376628-13376647 MsG0280007311.01.T01:intron 35.0%
AGAGGGAGTGAAGTAATTCT+TGG + Chr2:13375715-13375734 MsG0280007311.01.T01:five_prime_UTR 40.0%
ATACACTTTGTCGTGCTTTC+AGG + Chr2:13378131-13378150 MsG0280007311.01.T01:CDS 40.0%
CAAAATGGTAACTAGGACAG+TGG + Chr2:13375486-13375505 MsG0280007311.01.T01:five_prime_UTR 40.0%
CAGTGAACAAGCACAGATAA+AGG - Chr2:13375688-13375707 None:intergenic 40.0%
CATCGCTATCTGATATTTGG+TGG - Chr2:13378107-13378126 None:intergenic 40.0%
CCAACAATTACAGATCCAAC+TGG - Chr2:13377148-13377167 None:intergenic 40.0%
CCAGTTGGATCTGTAATTGT+TGG + Chr2:13377145-13377164 MsG0280007311.01.T01:five_prime_UTR 40.0%
CCATCTAAAGGACAAGTTAG+AGG - Chr2:13377691-13377710 None:intergenic 40.0%
GAAGAGATGGCAAAGATAAC+TGG + Chr2:13375621-13375640 MsG0280007311.01.T01:five_prime_UTR 40.0%
GCACATCGCTATCTGATATT+TGG - Chr2:13378110-13378129 None:intergenic 40.0%
GCCATATTCTTCTAAGTCCT+TGG - Chr2:13377918-13377937 None:intergenic 40.0%
GCTGCAATTAGAGATCCAAA+AGG + Chr2:13375851-13375870 MsG0280007311.01.T01:five_prime_UTR 40.0%
GGATTGAAGCTTCACATTGA+TGG + Chr2:13376487-13376506 MsG0280007311.01.T01:five_prime_UTR 40.0%
GTTTACGCTTAGAGAAGAGA+TGG + Chr2:13375608-13375627 MsG0280007311.01.T01:five_prime_UTR 40.0%
TAACTAGGACAGTGGATCTT+CGG + Chr2:13375494-13375513 MsG0280007311.01.T01:five_prime_UTR 40.0%
TGAAACAATGCGAGTTGCTA+TGG + Chr2:13375540-13375559 MsG0280007311.01.T01:five_prime_UTR 40.0%
TGAAATCAAAGGACTGAGAG+TGG + Chr2:13377717-13377736 MsG0280007311.01.T01:CDS 40.0%
TGGTTTCCTGAGATGTTTCT+TGG + Chr2:13376833-13376852 MsG0280007311.01.T01:intron 40.0%
TTATTGAATGTTGCAGCGTG+CGG + Chr2:13378228-13378247 MsG0280007311.01.T01:intron 40.0%
TTGTTCACTGCGACATAAGA+GGG + Chr2:13375698-13375717 MsG0280007311.01.T01:five_prime_UTR 40.0%
TTTCCAAACAATGAGCCTTG+TGG - Chr2:13375894-13375913 None:intergenic 40.0%
! AGCTTGTTTATCCAACCACA+AGG + Chr2:13375876-13375895 MsG0280007311.01.T01:five_prime_UTR 40.0%
! CCTCTAACTTGTCCTTTAGA+TGG + Chr2:13377688-13377707 MsG0280007311.01.T01:intron 40.0%
! CTTCAAACAGACTAGCTAGT+AGG - Chr2:13377635-13377654 None:intergenic 40.0%
! TCCATTTTCATTTGGTCCTC+CGG - Chr2:13378257-13378276 None:intergenic 40.0%
AACAGATTCTGTGCCATGTG+CGG + Chr2:13375107-13375126 MsG0280007311.01.T01:intron 45.0%
AACGGACACCCTTCAATATC+AGG + Chr2:13377570-13377589 MsG0280007311.01.T01:intron 45.0%
ACGGACACCCTTCAATATCA+GGG + Chr2:13377571-13377590 MsG0280007311.01.T01:intron 45.0%
ACTCTGCTGCCTTTGAATGA+AGG + Chr2:13376201-13376220 MsG0280007311.01.T01:intron 45.0%
AGAAGGCTCAGAAAGACCTT+AGG + Chr2:13377291-13377310 MsG0280007311.01.T01:five_prime_UTR 45.0%
ATGATCCGATTGGCATGAGA+AGG - Chr2:13377943-13377962 None:intergenic 45.0%
CAACCACAAGGCTCATTGTT+TGG + Chr2:13375888-13375907 MsG0280007311.01.T01:five_prime_UTR 45.0%
CACTGACACATGTTGGACAA+CGG + Chr2:13377552-13377571 MsG0280007311.01.T01:intron 45.0%
CTCTGCTGCCTTTGAATGAA+GGG + Chr2:13376202-13376221 MsG0280007311.01.T01:intron 45.0%
CTTGTTCACTGCGACATAAG+AGG + Chr2:13375697-13375716 MsG0280007311.01.T01:five_prime_UTR 45.0%
GCAACTCGCATTGTTTCAGT+TGG - Chr2:13375538-13375557 None:intergenic 45.0%
TCATGCCAATCGGATCATCA+AGG + Chr2:13377945-13377964 MsG0280007311.01.T01:CDS 45.0%
TTCTTGGATGTCACCTCCAA+GGG - Chr2:13375785-13375804 None:intergenic 45.0%
TTGTTTCCTGAATGCAGCAC+CGG + Chr2:13376407-13376426 MsG0280007311.01.T01:intron 45.0%
TTTGTCCCATCAGGCACTAT+GGG + Chr2:13375659-13375678 MsG0280007311.01.T01:five_prime_UTR 45.0%
! CAAACAATGAGCCTTGTGGT+TGG - Chr2:13375890-13375909 None:intergenic 45.0%
! CAAGACCTTGATGATCCGAT+TGG - Chr2:13377953-13377972 None:intergenic 45.0%
! CGCTATCTGATATTTGGTGG+TGG - Chr2:13378104-13378123 None:intergenic 45.0%
! GAGGTCGATGATGATGTTCT+TGG + Chr2:13375571-13375590 MsG0280007311.01.T01:five_prime_UTR 45.0%
! GGATAAACAAGCTCCCCTTT+TGG - Chr2:13375869-13375888 None:intergenic 45.0%
! TCGTGCTTTCAGGTGATGAT+CGG + Chr2:13378141-13378160 MsG0280007311.01.T01:intron 45.0%
! TTTTGTCCCATCAGGCACTA+TGG + Chr2:13375658-13375677 MsG0280007311.01.T01:five_prime_UTR 45.0%
!! AAAGGTATTGGTGCTCCAGT+TGG + Chr2:13377130-13377149 MsG0280007311.01.T01:five_prime_UTR 45.0%
!! AACTGAAAGGCATCTACCAC+CGG - Chr2:13376429-13376448 None:intergenic 45.0%
ACACCGACCCCTGATATTGA+AGG - Chr2:13377582-13377601 None:intergenic 50.0%
AGCGTAAACAAGAAGGGTCG+CGG - Chr2:13375597-13375616 None:intergenic 50.0%
AGGCTCAGAAAGACCTTAGG+TGG + Chr2:13377294-13377313 MsG0280007311.01.T01:five_prime_UTR 50.0%
AGTTGCTATGGCAAACGCTG+AGG + Chr2:13375552-13375571 MsG0280007311.01.T01:five_prime_UTR 50.0%
CAACAAGTGCAGCTGCACAA+AGG - Chr2:13377341-13377360 None:intergenic 50.0%
CACCCTTCAATATCAGGGGT+CGG + Chr2:13377576-13377595 MsG0280007311.01.T01:intron 50.0%
CACCGACCCCTGATATTGAA+GGG - Chr2:13377581-13377600 None:intergenic 50.0%
CGGACACCCTTCAATATCAG+GGG + Chr2:13377572-13377591 MsG0280007311.01.T01:intron 50.0%
CTCAGAAAGACCTTAGGTGG+TGG + Chr2:13377297-13377316 MsG0280007311.01.T01:five_prime_UTR 50.0%
CTGTCTCATTCCACCACCTA+AGG - Chr2:13377310-13377329 None:intergenic 50.0%
GAGAGTGGATACCTCTTCTG+TGG + Chr2:13377732-13377751 MsG0280007311.01.T01:CDS 50.0%
GCCGGAGGACCAAATGAAAA+TGG + Chr2:13378253-13378272 MsG0280007311.01.T01:CDS 50.0%
GCTTCGAACCGAGTACTTCA+AGG - Chr2:13376878-13376897 None:intergenic 50.0%
GGAGAGGTTGCTAAGAAGCA+CGG + Chr2:13376466-13376485 MsG0280007311.01.T01:five_prime_UTR 50.0%
GGCATCCTTCTCATGCCAAT+CGG + Chr2:13377935-13377954 MsG0280007311.01.T01:CDS 50.0%
GTACTGCAACTACTCTGCGT+CGG + Chr2:13376023-13376042 MsG0280007311.01.T01:intron 50.0%
GTTCTTGGATGTCACCTCCA+AGG - Chr2:13375786-13375805 None:intergenic 50.0%
TCCAGCAGCAAAGCTATCCA+AGG + Chr2:13377898-13377917 MsG0280007311.01.T01:CDS 50.0%
TCTCGGACACTGACACATGT+TGG + Chr2:13377545-13377564 MsG0280007311.01.T01:intron 50.0%
TCTTATGTCCACGCTTCGAG+CGG - Chr2:13375330-13375349 None:intergenic 50.0%
TTGTCCCATCAGGCACTATG+GGG + Chr2:13375660-13375679 MsG0280007311.01.T01:five_prime_UTR 50.0%
! AGCTGCTCTTTTGTCCCATC+AGG + Chr2:13375650-13375669 MsG0280007311.01.T01:five_prime_UTR 50.0%
! TCCTTGGATAGCTTTGCTGC+TGG - Chr2:13377902-13377921 None:intergenic 50.0%
! TGTGGATAGGCTTGTTCGAG+CGG + Chr2:13376657-13376676 MsG0280007311.01.T01:five_prime_UTR 50.0%
!! AATGGAGGCATTGCAACCCT+TGG + Chr2:13375766-13375785 MsG0280007311.01.T01:five_prime_UTR 50.0%
!! CACTTGGTGTTCCTGTGGAT+AGG + Chr2:13376644-13376663 MsG0280007311.01.T01:five_prime_UTR 50.0%
!! CTTAGGTGGTGGAATGAGAC+AGG + Chr2:13377308-13377327 MsG0280007311.01.T01:exon 50.0%
AGGTTCCCCATAGTGCCTGA+TGG - Chr2:13375668-13375687 None:intergenic 55.0%
CGTCGGAGATGTAGGCAGAA+TGG + Chr2:13376040-13376059 MsG0280007311.01.T01:intron 55.0%
CTACTCTGCGTCGGAGATGT+AGG + Chr2:13376032-13376051 MsG0280007311.01.T01:intron 55.0%
CTTATGTCCACGCTTCGAGC+GGG - Chr2:13375329-13375348 None:intergenic 55.0%
GCTCGAACAAGCCTATCCAC+AGG - Chr2:13376658-13376677 None:intergenic 55.0%
GGTTCCCCATAGTGCCTGAT+GGG - Chr2:13375667-13375686 None:intergenic 55.0%
! TTTCCTGAATGCAGCACCGG+TGG + Chr2:13376410-13376429 MsG0280007311.01.T01:intron 55.0%
!! GGTGGTGGAATGAGACAGGT+TGG + Chr2:13377312-13377331 MsG0280007311.01.T01:exon 55.0%
!! TCAGGCACTTGGTGTTCCTG+TGG + Chr2:13376639-13376658 MsG0280007311.01.T01:intron 55.0%
ATGTTGCAGCGTGCGGTTGC+CGG + Chr2:13378235-13378254 MsG0280007311.01.T01:intron 60.0%
GCATTATCCCGCTCGAAGCG+TGG + Chr2:13375319-13375338 MsG0280007311.01.T01:intron 60.0%
!! CTACCACCGGTGCTGCATTC+AGG - Chr2:13376416-13376435 None:intergenic 60.0%
!! GGAGGCATTGCAACCCTTGG+AGG + Chr2:13375769-13375788 MsG0280007311.01.T01:five_prime_UTR 60.0%
TTGCAGCGTGCGGTTGCCGG+AGG + Chr2:13378238-13378257 MsG0280007311.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 13374798 13378477 13374798 ID=MsG0280007311.01;Name=MsG0280007311.01
Chr2 mRNA 13374798 13378477 13374798 ID=MsG0280007311.01.T01;Parent=MsG0280007311.01;Name=MsG0280007311.01.T01;_AED=0.42;_eAED=0.42;_QI=811|0.9|0.90|1|0.6|0.54|11|175|130
Chr2 exon 13374798 13374899 13374798 ID=MsG0280007311.01.T01:exon:2515;Parent=MsG0280007311.01.T01
Chr2 exon 13375485 13375926 13375485 ID=MsG0280007311.01.T01:exon:2516;Parent=MsG0280007311.01.T01
Chr2 exon 13376424 13376534 13376424 ID=MsG0280007311.01.T01:exon:2517;Parent=MsG0280007311.01.T01
Chr2 exon 13376643 13376693 13376643 ID=MsG0280007311.01.T01:exon:2518;Parent=MsG0280007311.01.T01
Chr2 exon 13377118 13377189 13377118 ID=MsG0280007311.01.T01:exon:2519;Parent=MsG0280007311.01.T01
Chr2 exon 13377288 13377420 13377288 ID=MsG0280007311.01.T01:exon:2520;Parent=MsG0280007311.01.T01
Chr2 exon 13377707 13377765 13377707 ID=MsG0280007311.01.T01:exon:2521;Parent=MsG0280007311.01.T01
Chr2 exon 13377866 13377966 13377866 ID=MsG0280007311.01.T01:exon:2522;Parent=MsG0280007311.01.T01
Chr2 exon 13378059 13378152 13378059 ID=MsG0280007311.01.T01:exon:2523;Parent=MsG0280007311.01.T01
Chr2 exon 13378244 13378393 13378244 ID=MsG0280007311.01.T01:exon:2524;Parent=MsG0280007311.01.T01
Chr2 exon 13378414 13378477 13378414 ID=MsG0280007311.01.T01:exon:2525;Parent=MsG0280007311.01.T01
Chr2 five_prime_UTR 13374798 13374899 13374798 ID=MsG0280007311.01.T01:five_prime_utr;Parent=MsG0280007311.01.T01
Chr2 five_prime_UTR 13375485 13375926 13375485 ID=MsG0280007311.01.T01:five_prime_utr;Parent=MsG0280007311.01.T01
Chr2 five_prime_UTR 13376424 13376534 13376424 ID=MsG0280007311.01.T01:five_prime_utr;Parent=MsG0280007311.01.T01
Chr2 five_prime_UTR 13376643 13376693 13376643 ID=MsG0280007311.01.T01:five_prime_utr;Parent=MsG0280007311.01.T01
Chr2 five_prime_UTR 13377118 13377189 13377118 ID=MsG0280007311.01.T01:five_prime_utr;Parent=MsG0280007311.01.T01
Chr2 five_prime_UTR 13377288 13377320 13377288 ID=MsG0280007311.01.T01:five_prime_utr;Parent=MsG0280007311.01.T01
Chr2 CDS 13377321 13377420 13377321 ID=MsG0280007311.01.T01:cds;Parent=MsG0280007311.01.T01
Chr2 CDS 13377707 13377765 13377707 ID=MsG0280007311.01.T01:cds;Parent=MsG0280007311.01.T01
Chr2 CDS 13377866 13377966 13377866 ID=MsG0280007311.01.T01:cds;Parent=MsG0280007311.01.T01
Chr2 CDS 13378059 13378152 13378059 ID=MsG0280007311.01.T01:cds;Parent=MsG0280007311.01.T01
Chr2 CDS 13378244 13378282 13378244 ID=MsG0280007311.01.T01:cds;Parent=MsG0280007311.01.T01
Chr2 three_prime_UTR 13378283 13378393 13378283 ID=MsG0280007311.01.T01:three_prime_utr;Parent=MsG0280007311.01.T01
Chr2 three_prime_UTR 13378414 13378477 13378414 ID=MsG0280007311.01.T01:three_prime_utr;Parent=MsG0280007311.01.T01
Gene Sequence

>MsG0280007311.01.T01

ATGAGACAGGTTGGCATCCTTTGTGCAGCTGCACTTGTTGCATTACATGAAAATGTTGAAAAGCTAGAAAGTGATCACAAGAATGCTAGATTTTTGGCCGATGGATTGAATGAAATCAAAGGACTGAGAGTGGATACCTCTTCTGTGGAAACCAATATTATATATATTGAAATTGAAGAGAATTCAGGAACTCCAGCAGCAAAGCTATCCAAGGACTTAGAAGAATATGGCATCCTTCTCATGCCAATCGGATCATCAAGTTTCATTGGTTCATTTTCTCTTGACAGATTGAGAGTTGTATTCCACCACCAAATATCAGATAGCGATGTGCGATACACTTTGTCGTGCTTTCAGCGTGCGGTTGCCGGAGGACCAAATGAAAATGGAAACTAG

Protein sequence

>MsG0280007311.01.T01

MRQVGILCAAALVALHENVEKLESDHKNARFLADGLNEIKGLRVDTSSVETNIIYIEIEENSGTPAAKLSKDLEEYGILLMPIGSSSFIGSFSLDRLRVVFHHQISDSDVRYTLSCFQRAVAGGPNENGN*