AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046995.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046995.01.T02 MTR_4g118790 87.778 270 6 1 1 270 1 243 4.66e-172 474
MsG0880046995.01.T01 MTR_4g118790 87.778 270 6 1 1 270 1 243 4.66e-172 474
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046995.01.T02 AT4G15563 45.882 170 92 0 93 262 23 192 9.33e-45 150
MsG0880046995.01.T02 AT4G15563 45.283 159 87 0 104 262 2 160 3.48e-40 137
MsG0880046995.01.T02 AT4G15563 45.283 159 87 0 104 262 2 160 3.48e-40 137
MsG0880046995.01.T02 AT4G15563 45.283 159 87 0 104 262 2 160 3.48e-40 137
MsG0880046995.01.T02 AT4G15563 45.283 159 87 0 104 262 2 160 3.48e-40 137
MsG0880046995.01.T02 AT4G15563 45.283 159 87 0 104 262 2 160 3.48e-40 137
MsG0880046995.01.T02 AT4G15563 45.283 159 87 0 104 262 2 160 3.48e-40 137
MsG0880046995.01.T02 AT4G15563 45.283 159 87 0 104 262 2 160 3.48e-40 137
MsG0880046995.01.T02 AT4G15563 45.283 159 87 0 104 262 2 160 3.48e-40 137
MsG0880046995.01.T02 AT4G15563 45.283 159 87 0 104 262 2 160 3.48e-40 137
MsG0880046995.01.T01 AT4G15563 45.882 170 92 0 93 262 23 192 9.33e-45 150
MsG0880046995.01.T01 AT4G15563 45.283 159 87 0 104 262 2 160 3.48e-40 137
MsG0880046995.01.T01 AT4G15563 45.283 159 87 0 104 262 2 160 3.48e-40 137
MsG0880046995.01.T01 AT4G15563 45.283 159 87 0 104 262 2 160 3.48e-40 137
MsG0880046995.01.T01 AT4G15563 45.283 159 87 0 104 262 2 160 3.48e-40 137
MsG0880046995.01.T01 AT4G15563 45.283 159 87 0 104 262 2 160 3.48e-40 137
MsG0880046995.01.T01 AT4G15563 45.283 159 87 0 104 262 2 160 3.48e-40 137
MsG0880046995.01.T01 AT4G15563 45.283 159 87 0 104 262 2 160 3.48e-40 137
MsG0880046995.01.T01 AT4G15563 45.283 159 87 0 104 262 2 160 3.48e-40 137
MsG0880046995.01.T01 AT4G15563 45.283 159 87 0 104 262 2 160 3.48e-40 137

Find 33 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATATTAATGCTGATAAATA+TGG 0.274041 8:-80773594 None:intergenic
AGAAGACGGTGAGTCTGTTT+TGG 0.282214 8:+80773377 MsG0880046995.01.T01:CDS
GTCAATTCCTTGGTCCTATC+AGG 0.284086 8:+80773464 MsG0880046995.01.T01:CDS
TTGGGTTTCTTTGGCAGATC+TGG 0.331346 8:+80773350 MsG0880046995.01.T01:CDS
CTTGTAACTATTCCAATCTC+TGG 0.355297 8:-80773491 None:intergenic
CAATCTCTGGGTAACCTGAT+AGG 0.405514 8:-80773478 None:intergenic
GGGTCTATGGCTACCGTGGT+AGG 0.416201 8:+80773310 MsG0880046995.01.T01:CDS
GCTTATTATCTTATTCCCAT+TGG 0.431462 8:+80773723 MsG0880046995.01.T01:three_prime_UTR
AAACTTGGTAGGTGGGTCTA+TGG 0.443490 8:+80773297 MsG0880046995.01.T01:CDS
CTATCAGGTTACCCAGAGAT+TGG 0.467982 8:+80773479 MsG0880046995.01.T01:CDS
CGTAGTATATTATCAAATAC+AGG 0.471995 8:+80773682 MsG0880046995.01.T01:three_prime_UTR
CGTGTTCAGATATCTGCCAT+TGG 0.534620 8:+80773435 MsG0880046995.01.T01:CDS
ATGATCTTCTAGAAGCCCTT+CGG 0.534903 8:+80773232 MsG0880046995.01.T01:CDS
TGCGTCAAGTGGTGGAAACT+TGG 0.540285 8:+80773282 MsG0880046995.01.T01:CDS
TTGGTCATAAGTCAATTCCT+TGG 0.545574 8:+80773454 MsG0880046995.01.T01:CDS
GGTCTATGGCTACCGTGGTA+GGG 0.548624 8:+80773311 MsG0880046995.01.T01:CDS
AGTGGTGGAAACTTGGTAGG+TGG 0.573773 8:+80773289 MsG0880046995.01.T01:CDS
TTGTAACTATTCCAATCTCT+GGG 0.574866 8:-80773490 None:intergenic
GTGGTGGAAACTTGGTAGGT+GGG 0.576945 8:+80773290 MsG0880046995.01.T01:CDS
CAGAGATTGGAATAGTTACA+AGG 0.583597 8:+80773492 MsG0880046995.01.T01:exon
TTGATATCTCACAAGTCCGA+AGG 0.587422 8:-80773248 None:intergenic
GCAGATCTGGCAACAGAAGA+CGG 0.592985 8:+80773363 MsG0880046995.01.T01:CDS
GGACTTGTGAGATATCAAAT+CGG 0.593402 8:+80773253 MsG0880046995.01.T01:CDS
GGCATGTATGCGTCAAGTGG+TGG 0.599879 8:+80773274 MsG0880046995.01.T01:CDS
TCGTCGGGGTACCGTTCATG+AGG 0.602028 8:+80773407 MsG0880046995.01.T01:CDS
TGATATCTCACAAGTCCGAA+GGG 0.614289 8:-80773247 None:intergenic
ATCGGCATGTATGCGTCAAG+TGG 0.618540 8:+80773271 MsG0880046995.01.T01:CDS
TCAAGTGGTGGAAACTTGGT+AGG 0.623615 8:+80773286 MsG0880046995.01.T01:CDS
AACACGTAAAACCTCATGAA+CGG 0.630449 8:-80773418 None:intergenic
AGGAATTGACTTATGACCAA+TGG 0.633850 8:-80773451 None:intergenic
TGGGTAACCTGATAGGACCA+AGG 0.679782 8:-80773471 None:intergenic
AGGTGGGTCTATGGCTACCG+TGG 0.698256 8:+80773306 MsG0880046995.01.T01:CDS
AAAGTAACTCATCCCTACCA+CGG 0.711407 8:-80773323 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATGAAAATTAGAAAAT+AGG - Chr8:80770413-80770432 None:intergenic 10.0%
!!! TAATAAATAATTTTAGTCAA+TGG + Chr8:80771191-80771210 MsG0880046995.01.T01:intron 10.0%
!! AAAAAACAAGAAAAAAATCA+TGG - Chr8:80770655-80770674 None:intergenic 15.0%
!! AAAAACAAGAAAAAAATCAT+GGG - Chr8:80770654-80770673 None:intergenic 15.0%
!! ACTTTGGTAAAATAAAAAAT+TGG - Chr8:80770686-80770705 None:intergenic 15.0%
!! CTTTGGTAAAATAAAAAATT+GGG - Chr8:80770685-80770704 None:intergenic 15.0%
!! TAATTAGAAGTTTATTGATA+AGG + Chr8:80772428-80772447 MsG0880046995.01.T01:intron 15.0%
!!! AAATTTTTTCAAGTTTATCT+CGG + Chr8:80772245-80772264 MsG0880046995.01.T01:intron 15.0%
!!! CAAAAGATATTTTATTTGAT+TGG - Chr8:80772376-80772395 None:intergenic 15.0%
!!! CAATCAAATAAAATATCTTT+TGG + Chr8:80772374-80772393 MsG0880046995.01.T01:intron 15.0%
!!! TTTGTTACTTTTTATGAATT+TGG + Chr8:80770705-80770724 MsG0880046995.01.T01:intron 15.0%
!! AAAATAGTTGAACGTAAAAA+TGG - Chr8:80770770-80770789 None:intergenic 20.0%
!! AAACTATCTTAAAGAGATTA+TGG + Chr8:80771022-80771041 MsG0880046995.01.T01:intron 20.0%
!! ACTAGTTAAGGAATTATAAA+AGG - Chr8:80771701-80771720 None:intergenic 20.0%
!! ACTTATTTAAGCTTATCTAT+TGG - Chr8:80771127-80771146 None:intergenic 20.0%
!! AGTAAAAAAATGACAAGATT+AGG - Chr8:80772676-80772695 None:intergenic 20.0%
!! ATATCGTTCATTATCATTAT+TGG + Chr8:80771310-80771329 MsG0880046995.01.T01:intron 20.0%
!! ATTTAAGCTTATCATTTAGT+GGG - Chr8:80771164-80771183 None:intergenic 20.0%
!! CATATTAATGCTGATAAATA+TGG - Chr8:80773597-80773616 None:intergenic 20.0%
!! TACAAAAAATCAAGGAATAA+AGG - Chr8:80772792-80772811 None:intergenic 20.0%
!! TCATAAAAAGTAACAAACTT+TGG - Chr8:80770702-80770721 None:intergenic 20.0%
!!! TGTTTCTATACAAAAAATCA+AGG - Chr8:80772800-80772819 None:intergenic 20.0%
!!! TTTACGTTCAACTATTTTTT+AGG + Chr8:80770772-80770791 MsG0880046995.01.T01:intron 20.0%
!!! TTTTTATGAATTTGGATTCT+GGG + Chr8:80770713-80770732 MsG0880046995.01.T01:intron 20.0%
! AAAACATATACTACAGAACA+TGG - Chr8:80772849-80772868 None:intergenic 25.0%
! AAAACGTGAAACAAGTAAAA+GGG - Chr8:80770483-80770502 None:intergenic 25.0%
! AATAAGCTGAAAACAACTTA+TGG + Chr8:80771046-80771065 MsG0880046995.01.T01:intron 25.0%
! ACCCATACTCAAATAAAATA+AGG - Chr8:80771758-80771777 None:intergenic 25.0%
! ATCTGCACAAAGAATTTATT+AGG - Chr8:80772601-80772620 None:intergenic 25.0%
! CAAAAGATAGAATTTGAAAG+AGG - Chr8:80772073-80772092 None:intergenic 25.0%
! CCCATACTCAAATAAAATAA+GGG - Chr8:80771757-80771776 None:intergenic 25.0%
! CGTAGTATATTATCAAATAC+AGG + Chr8:80773682-80773701 MsG0880046995.01.T01:three_prime_UTR 25.0%
! GATTTAAGCTTATCATTTAG+TGG - Chr8:80771165-80771184 None:intergenic 25.0%
! TAAAGGGATAAAAATTAGCA+CGG - Chr8:80772024-80772043 None:intergenic 25.0%
! TATTAGATATTGAGAAGGTT+TGG + Chr8:80771335-80771354 MsG0880046995.01.T01:intron 25.0%
! TGAACGTAAAAATGGAAAAA+GGG - Chr8:80770762-80770781 None:intergenic 25.0%
! TGATTTAGAGAATAAGTTGT+AGG - Chr8:80773098-80773117 None:intergenic 25.0%
! TGTTATGTGGTGTAATTATT+TGG + Chr8:80771376-80771395 MsG0880046995.01.T01:CDS 25.0%
! TTGAACGTAAAAATGGAAAA+AGG - Chr8:80770763-80770782 None:intergenic 25.0%
! TTTAAGCTTATCATTTAGTG+GGG - Chr8:80771163-80771182 None:intergenic 25.0%
! TTTCCTTTGAATATCATTTC+CGG + Chr8:80772766-80772785 MsG0880046995.01.T01:intron 25.0%
!! ATTATCAGTTGGGATTTTAA+CGG - Chr8:80773054-80773073 None:intergenic 25.0%
!! CTTTTTATGAATTTGGATTC+TGG + Chr8:80770712-80770731 MsG0880046995.01.T01:intron 25.0%
!! TTTCTATATAAAGTGTTCCT+TGG - Chr8:80772889-80772908 None:intergenic 25.0%
!! TTTTGTCTCATATTCATGTT+TGG + Chr8:80770872-80770891 MsG0880046995.01.T01:intron 25.0%
!!! AACTATTTTTTAGGCTCAAA+AGG + Chr8:80770781-80770800 MsG0880046995.01.T01:intron 25.0%
!!! ACTATTTTTTAGGCTCAAAA+GGG + Chr8:80770782-80770801 MsG0880046995.01.T01:intron 25.0%
!!! ATTTTGAAGTTGATATCTTC+AGG - Chr8:80770371-80770390 None:intergenic 25.0%
!!! CCCTTATTTTATTTGAGTAT+GGG + Chr8:80771754-80771773 MsG0880046995.01.T01:intron 25.0%
!!! CTAGCATACAGTTATTTTAA+TGG - Chr8:80772140-80772159 None:intergenic 25.0%
!!! GTTTTAGTGACTGTAAAATT+TGG + Chr8:80770841-80770860 MsG0880046995.01.T01:intron 25.0%
!!! TCCCTTATTTTATTTGAGTA+TGG + Chr8:80771753-80771772 MsG0880046995.01.T01:intron 25.0%
AAAAATCAAGGAATAAAGGC+CGG - Chr8:80772788-80772807 None:intergenic 30.0%
AAAAGGAAACGTAATGAAAG+AGG - Chr8:80771684-80771703 None:intergenic 30.0%
AAACGACACTTAATATGAGA+CGG + Chr8:80771273-80771292 MsG0880046995.01.T01:intron 30.0%
AAAGGAAACGTAATGAAAGA+GGG - Chr8:80771683-80771702 None:intergenic 30.0%
AACCACTCATAAAACTGTTT+AGG - Chr8:80771101-80771120 None:intergenic 30.0%
ACAACCATAATTTAGCAACA+AGG - Chr8:80770823-80770842 None:intergenic 30.0%
ACTTGTATTTGATCTCTGAT+TGG - Chr8:80772468-80772487 None:intergenic 30.0%
AGTAAAAGGGTGAATGAAAA+TGG - Chr8:80770470-80770489 None:intergenic 30.0%
ATAGCATGCATGAATGATAT+AGG - Chr8:80770436-80770455 None:intergenic 30.0%
CATCATATGCAAAGAAGATA+TGG + Chr8:80770316-80770335 MsG0880046995.01.T01:intron 30.0%
CTATGAGATTGAATGAGTTA+TGG + Chr8:80771794-80771813 MsG0880046995.01.T01:intron 30.0%
CTATGATCTAATCCTTCAAA+AGG - Chr8:80773171-80773190 None:intergenic 30.0%
GAAAACGTGAAACAAGTAAA+AGG - Chr8:80770484-80770503 None:intergenic 30.0%
GAATGAGTTATGGAGTAAAA+AGG + Chr8:80771804-80771823 MsG0880046995.01.T01:intron 30.0%
GTTTCGAAGCTTAAAAGATA+AGG + Chr8:80772714-80772733 MsG0880046995.01.T01:intron 30.0%
TAGAAACATGAGAAATGAAG+AGG + Chr8:80772812-80772831 MsG0880046995.01.T01:intron 30.0%
TAGTTAAGTGCTTATAGCAT+AGG + Chr8:80770905-80770924 MsG0880046995.01.T01:intron 30.0%
TATTCAAAGGAAAAGAAAGC+AGG - Chr8:80772759-80772778 None:intergenic 30.0%
TCTATGAAGAAGTTGAAACA+AGG - Chr8:80772337-80772356 None:intergenic 30.0%
TCTTAGAGTTGGCTAATATT+AGG - Chr8:80772567-80772586 None:intergenic 30.0%
TGAATGAAAATGGAATTGGA+AGG - Chr8:80770460-80770479 None:intergenic 30.0%
TGACCACAAAATTATCAGTT+GGG - Chr8:80773064-80773083 None:intergenic 30.0%
TGGCATATTAGATATTGAGA+AGG + Chr8:80771330-80771349 MsG0880046995.01.T01:intron 30.0%
TGTTCCTTGTTGCTAAATTA+TGG + Chr8:80770816-80770835 MsG0880046995.01.T01:intron 30.0%
TTAAGCAACACATTCATTTG+AGG - Chr8:80771599-80771618 None:intergenic 30.0%
TTCCTTAACTAATGCACTAA+TGG - Chr8:80771924-80771943 None:intergenic 30.0%
TTCTGAGTTAAGTGTAACAA+GGG - Chr8:80772298-80772317 None:intergenic 30.0%
TTGACCACAAAATTATCAGT+TGG - Chr8:80773065-80773084 None:intergenic 30.0%
TTGTAACTATTCCAATCTCT+GGG - Chr8:80773493-80773512 None:intergenic 30.0%
TTTCTGAGTTAAGTGTAACA+AGG - Chr8:80772299-80772318 None:intergenic 30.0%
! AATCCCAACTGATAATTTTG+TGG + Chr8:80773058-80773077 MsG0880046995.01.T01:intron 30.0%
! ATATTGAGAAGGTTTGGTTT+GGG + Chr8:80771341-80771360 MsG0880046995.01.T01:CDS 30.0%
! CATTCATTTGAGGTTTAAAC+AGG - Chr8:80771589-80771608 None:intergenic 30.0%
! CTTAGTATTTTCTCTTTTGC+CGG - Chr8:80771844-80771863 None:intergenic 30.0%
! GTAGTGTTATTACTGTTATG+TGG + Chr8:80771363-80771382 MsG0880046995.01.T01:CDS 30.0%
! TCACTTTAGAGAAGACAAAT+TGG + Chr8:80773124-80773143 MsG0880046995.01.T01:intron 30.0%
! TGGTGTAATTATTTGGAGTT+TGG + Chr8:80771383-80771402 MsG0880046995.01.T01:CDS 30.0%
! TTACTTGTTTCACGTTTTCT+AGG + Chr8:80770485-80770504 MsG0880046995.01.T01:intron 30.0%
! TTAGTATTTTCTCTTTTGCC+GGG - Chr8:80771843-80771862 None:intergenic 30.0%
! TTCTTTGCATATGATGATGA+TGG - Chr8:80770312-80770331 None:intergenic 30.0%
!! AATGAATGTGTTGCTTAACT+TGG + Chr8:80771601-80771620 MsG0880046995.01.T01:CDS 30.0%
!! AATTTGTCTTCTCTAAAGTG+AGG - Chr8:80773125-80773144 None:intergenic 30.0%
!! ATTTGTCTTCTCTAAAGTGA+GGG - Chr8:80773124-80773143 None:intergenic 30.0%
!! CAAGCCTTTGAAATCATTAA+TGG + Chr8:80771530-80771549 MsG0880046995.01.T01:CDS 30.0%
!! CTCATATTAAGTGTCGTTTA+AGG - Chr8:80771272-80771291 None:intergenic 30.0%
!! TTTAAGGTTGCACATTTTCT+AGG - Chr8:80771256-80771275 None:intergenic 30.0%
!!! TTGGTCAGTTTTATTACGTA+GGG + Chr8:80772393-80772412 MsG0880046995.01.T01:intron 30.0%
!!! TTTGGTCAGTTTTATTACGT+AGG + Chr8:80772392-80772411 MsG0880046995.01.T01:intron 30.0%
AACACGTAAAACCTCATGAA+CGG - Chr8:80773421-80773440 None:intergenic 35.0%
AACTCAGAAAGTCACTTATC+CGG + Chr8:80772309-80772328 MsG0880046995.01.T01:intron 35.0%
AAGAAGTTGAAACAAGGAAC+CGG - Chr8:80772331-80772350 None:intergenic 35.0%
AGCTTCGAAACATGCAAATT+TGG - Chr8:80772705-80772724 None:intergenic 35.0%
AGGGTGAATGAAAATGGAAT+TGG - Chr8:80770464-80770483 None:intergenic 35.0%
ATCATTTAGTGGGGCATATT+TGG - Chr8:80771154-80771173 None:intergenic 35.0%
ATGCTAGAAGCTAGAAAACA+TGG + Chr8:80772153-80772172 MsG0880046995.01.T01:intron 35.0%
ATTATTGTGCAACAAGCCTT+GGG + Chr8:80771633-80771652 MsG0880046995.01.T01:CDS 35.0%
CAGAGATTGGAATAGTTACA+AGG + Chr8:80773492-80773511 MsG0880046995.01.T01:exon 35.0%
CATACAATGAAACAGCTGTT+TGG - Chr8:80772220-80772239 None:intergenic 35.0%
CTAGTAGTTCTTCTTAGAGT+TGG - Chr8:80772578-80772597 None:intergenic 35.0%
CTTGTAACTATTCCAATCTC+TGG - Chr8:80773494-80773513 None:intergenic 35.0%
GAAGCTAGAAAACATGGTTA+CGG + Chr8:80772159-80772178 MsG0880046995.01.T01:intron 35.0%
GCTTCGAAACATGCAAATTT+GGG - Chr8:80772704-80772723 None:intergenic 35.0%
GGACTTGTGAGATATCAAAT+CGG + Chr8:80773253-80773272 MsG0880046995.01.T01:CDS 35.0%
GTAATGAAAGAGGGTGAAAA+AGG - Chr8:80771674-80771693 None:intergenic 35.0%
TAATTCCTTAACTAGTGTCC+CGG + Chr8:80771705-80771724 MsG0880046995.01.T01:intron 35.0%
TATGCTTCTCAGATTCCATT+TGG + Chr8:80770556-80770575 MsG0880046995.01.T01:CDS 35.0%
TATTCTTCACAAAGGACAGA+AGG + Chr8:80772532-80772551 MsG0880046995.01.T01:intron 35.0%
TGCCATTAGTGCATTAGTTA+AGG + Chr8:80771919-80771938 MsG0880046995.01.T01:intron 35.0%
TGCGCCATTAATGATTTCAA+AGG - Chr8:80771537-80771556 None:intergenic 35.0%
TGTCCTTTGTGAAGAATAGT+CGG - Chr8:80772530-80772549 None:intergenic 35.0%
TTAGGAGCTGTTAGAAAACA+TGG - Chr8:80772658-80772677 None:intergenic 35.0%
TTATGGAGTAAAAAGGTCCA+TGG + Chr8:80771811-80771830 MsG0880046995.01.T01:intron 35.0%
TTGAAATCATTAATGGCGCA+AGG + Chr8:80771537-80771556 MsG0880046995.01.T01:CDS 35.0%
TTGATAAGGATCTAAGCGAA+AGG + Chr8:80772442-80772461 MsG0880046995.01.T01:intron 35.0%
TTGGTCATAAGTCAATTCCT+TGG + Chr8:80773454-80773473 MsG0880046995.01.T01:CDS 35.0%
TTTAGCAACAAGGAACAAAG+AGG - Chr8:80770813-80770832 None:intergenic 35.0%
! AGGAATTGACTTATGACCAA+TGG - Chr8:80773454-80773473 None:intergenic 35.0%
! CTATGTTTTACCCCTTTAGA+GGG + Chr8:80772960-80772979 MsG0880046995.01.T01:intron 35.0%
! CTCTAAAGGGGTAAAACATA+GGG - Chr8:80772961-80772980 None:intergenic 35.0%
! GATATTGAGAAGGTTTGGTT+TGG + Chr8:80771340-80771359 MsG0880046995.01.T01:intron 35.0%
! TATAAAGTGTTCCTTGGAAG+AGG - Chr8:80772883-80772902 None:intergenic 35.0%
! TCTATCTTTTGCATATTGCC+TGG + Chr8:80772082-80772101 MsG0880046995.01.T01:intron 35.0%
! TTATCGAGCTAACCTTTTGA+AGG + Chr8:80773156-80773175 MsG0880046995.01.T01:intron 35.0%
! TTCAAAAGGTTAGCTCGATA+AGG - Chr8:80773157-80773176 None:intergenic 35.0%
!! AATGTGTTGCTTAACTTGGT+TGG + Chr8:80771605-80771624 MsG0880046995.01.T01:CDS 35.0%
!! CTCCTAAACAGTTTTATGAG+TGG + Chr8:80771096-80771115 MsG0880046995.01.T01:intron 35.0%
!! GAAGTTGATATCTTCAGGAA+GGG - Chr8:80770366-80770385 None:intergenic 35.0%
!! GAGTTTTAGCGCTTGATTTA+TGG + Chr8:80773007-80773026 MsG0880046995.01.T01:intron 35.0%
!! TGAAGTTGATATCTTCAGGA+AGG - Chr8:80770367-80770386 None:intergenic 35.0%
!!! ACTTTTTCGTTGGGTTTCTT+TGG + Chr8:80773341-80773360 MsG0880046995.01.T01:CDS 35.0%
!!! GGATGAGTTACTTTTTCGTT+GGG + Chr8:80773332-80773351 MsG0880046995.01.T01:CDS 35.0%
AAAGTAACTCATCCCTACCA+CGG - Chr8:80773326-80773345 None:intergenic 40.0%
AATTCCTTAACTAGTGTCCC+GGG + Chr8:80771706-80771725 MsG0880046995.01.T01:intron 40.0%
ACCAGAAGCAATTCTAAACC+AGG - Chr8:80772103-80772122 None:intergenic 40.0%
ACTCCGACTATTCTTCACAA+AGG + Chr8:80772524-80772543 MsG0880046995.01.T01:intron 40.0%
ACTCTCTTGTCACTAACAGA+TGG + Chr8:80770580-80770599 MsG0880046995.01.T01:CDS 40.0%
AGGCCGGAAATGATATTCAA+AGG - Chr8:80772772-80772791 None:intergenic 40.0%
ATCATTAATGGCGCAAGGTT+TGG + Chr8:80771542-80771561 MsG0880046995.01.T01:CDS 40.0%
CAAAATCGCTTCACTTCTTC+AGG + Chr8:80770385-80770404 MsG0880046995.01.T01:CDS 40.0%
CATAGGCGCTATCATATAAG+TGG + Chr8:80770922-80770941 MsG0880046995.01.T01:intron 40.0%
CATGGTTACGGTTTGACATA+TGG + Chr8:80772171-80772190 MsG0880046995.01.T01:intron 40.0%
CATTATTGTGCAACAAGCCT+TGG + Chr8:80771632-80771651 MsG0880046995.01.T01:CDS 40.0%
CTAATGTGCATCCCTCTAAA+GGG - Chr8:80772974-80772993 None:intergenic 40.0%
GCATAGTTGTCTCCAGAATT+TGG - Chr8:80770541-80770560 None:intergenic 40.0%
GGTGAAAAAGGATGGAATAC+CGG - Chr8:80771662-80771681 None:intergenic 40.0%
TCATATGCAAGTGTCTCTGT+TGG + Chr8:80773202-80773221 MsG0880046995.01.T01:intron 40.0%
TCTAATGTGCATCCCTCTAA+AGG - Chr8:80772975-80772994 None:intergenic 40.0%
TCTCGGCAAACTATTTGTAC+AGG + Chr8:80772262-80772281 MsG0880046995.01.T01:intron 40.0%
TGAAAGAGGGTGAAAAAGGA+TGG - Chr8:80771670-80771689 None:intergenic 40.0%
TGAAGAATAGTCGGAGTACA+AGG - Chr8:80772521-80772540 None:intergenic 40.0%
TGATATCTCACAAGTCCGAA+GGG - Chr8:80773250-80773269 None:intergenic 40.0%
TTAGAGGGATGCACATTAGA+CGG + Chr8:80772975-80772994 MsG0880046995.01.T01:intron 40.0%
TTGAGTATGGGTAGCTTACT+TGG + Chr8:80771766-80771785 MsG0880046995.01.T01:intron 40.0%
TTGATATCTCACAAGTCCGA+AGG - Chr8:80773251-80773270 None:intergenic 40.0%
! ACCACTGCTCTAACTTGTAA+AGG - Chr8:80772041-80772060 None:intergenic 40.0%
! ATGATCTTCTAGAAGCCCTT+CGG + Chr8:80773232-80773251 MsG0880046995.01.T01:CDS 40.0%
! CCACTGCTCTAACTTGTAAA+GGG - Chr8:80772040-80772059 None:intergenic 40.0%
! CCTATGTTTTACCCCTTTAG+AGG + Chr8:80772959-80772978 MsG0880046995.01.T01:intron 40.0%
! CCTCTAAAGGGGTAAAACAT+AGG - Chr8:80772962-80772981 None:intergenic 40.0%
! GTTAGAGCAGTGGTTTTCAT+TGG + Chr8:80772047-80772066 MsG0880046995.01.T01:intron 40.0%
! TAATGTGCATCCCTCTAAAG+GGG - Chr8:80772973-80772992 None:intergenic 40.0%
! TGGGTTGTTGTTCCAAATTC+TGG + Chr8:80770526-80770545 MsG0880046995.01.T01:CDS 40.0%
!!! GGGATGAGTTACTTTTTCGT+TGG + Chr8:80773331-80773350 MsG0880046995.01.T01:CDS 40.0%
!!! TTGGTTTTGAAGACATCCAG+AGG + Chr8:80771561-80771580 MsG0880046995.01.T01:CDS 40.0%
AAACTTGGTAGGTGGGTCTA+TGG + Chr8:80773297-80773316 MsG0880046995.01.T01:CDS 45.0%
ACCCACCCTACCTTGATATA+GGG - Chr8:80770630-80770649 None:intergenic 45.0%
ATTCCTTAACTAGTGTCCCG+GGG + Chr8:80771707-80771726 MsG0880046995.01.T01:intron 45.0%
CAATCTCTGGGTAACCTGAT+AGG - Chr8:80773481-80773500 None:intergenic 45.0%
CAGCTGTTTGGATTCACAGT+TGG - Chr8:80772208-80772227 None:intergenic 45.0%
CCCTTTACAAGTTAGAGCAG+TGG + Chr8:80772037-80772056 MsG0880046995.01.T01:intron 45.0%
CGTAATGAATCGCTTGAGGT+TGG + Chr8:80771497-80771516 MsG0880046995.01.T01:CDS 45.0%
CGTGTTCAGATATCTGCCAT+TGG + Chr8:80773435-80773454 MsG0880046995.01.T01:CDS 45.0%
CTATCAGGTTACCCAGAGAT+TGG + Chr8:80773479-80773498 MsG0880046995.01.T01:CDS 45.0%
GAGAGAGAGGAATGGAGTAA+GGG - Chr8:80770606-80770625 None:intergenic 45.0%
GAGGTTTAAACAGGAACCTC+TGG - Chr8:80771580-80771599 None:intergenic 45.0%
GGAGAAGATTGTACTTCGAG+AGG + Chr8:80771417-80771436 MsG0880046995.01.T01:CDS 45.0%
GTCAATTCCTTGGTCCTATC+AGG + Chr8:80773464-80773483 MsG0880046995.01.T01:CDS 45.0%
TACCCACCCTACCTTGATAT+AGG - Chr8:80770631-80770650 None:intergenic 45.0%
TCCTTGGAAGAGGAGAAAAG+TGG - Chr8:80772873-80772892 None:intergenic 45.0%
TCTCCCCCTATATCAAGGTA+GGG + Chr8:80770622-80770641 MsG0880046995.01.T01:CDS 45.0%
TGGAGTTTGGATTGCAGACA+TGG + Chr8:80771396-80771415 MsG0880046995.01.T01:CDS 45.0%
TTCGCGTAATGAATCGCTTG+AGG + Chr8:80771493-80771512 MsG0880046995.01.T01:CDS 45.0%
TTGGGTTTCTTTGGCAGATC+TGG + Chr8:80773350-80773369 MsG0880046995.01.T01:CDS 45.0%
! AGAAGACGGTGAGTCTGTTT+TGG + Chr8:80773377-80773396 MsG0880046995.01.T01:CDS 45.0%
! GAAGACGGTGAGTCTGTTTT+GGG + Chr8:80773378-80773397 MsG0880046995.01.T01:CDS 45.0%
! GCCTGGTTTAGAATTGCTTC+TGG + Chr8:80772099-80772118 MsG0880046995.01.T01:intron 45.0%
! GTGCGTGATTTGTGTGCTTT+GGG + Chr8:80770507-80770526 MsG0880046995.01.T01:CDS 45.0%
! TCAAGTGGTGGAAACTTGGT+AGG + Chr8:80773286-80773305 MsG0880046995.01.T01:CDS 45.0%
!! AGTGACAAGAGAGTGCCAAA+TGG - Chr8:80770574-80770593 None:intergenic 45.0%
!! ATCGAGTTGGGAATTAGAGC+AGG + Chr8:80771443-80771462 MsG0880046995.01.T01:CDS 45.0%
!! TCGAGTTGGGAATTAGAGCA+GGG + Chr8:80771444-80771463 MsG0880046995.01.T01:CDS 45.0%
AAAGGTCCATGGTTGAGTCC+CGG + Chr8:80771822-80771841 MsG0880046995.01.T01:intron 50.0%
ATCGGCATGTATGCGTCAAG+TGG + Chr8:80773271-80773290 MsG0880046995.01.T01:CDS 50.0%
ATGCAAGTGTCTCTGTTGGC+AGG + Chr8:80773206-80773225 MsG0880046995.01.T01:intron 50.0%
CCACCCTACCTTGATATAGG+GGG - Chr8:80770628-80770647 None:intergenic 50.0%
CCCACCCTACCTTGATATAG+GGG - Chr8:80770629-80770648 None:intergenic 50.0%
CCCCTATATCAAGGTAGGGT+GGG + Chr8:80770626-80770645 MsG0880046995.01.T01:CDS 50.0%
CTCTCCCCCTATATCAAGGT+AGG + Chr8:80770621-80770640 MsG0880046995.01.T01:CDS 50.0%
CTCTCTCTCCCCCTATATCA+AGG + Chr8:80770617-80770636 MsG0880046995.01.T01:CDS 50.0%
CTTGATATAGGGGGAGAGAG+AGG - Chr8:80770619-80770638 None:intergenic 50.0%
GATGGAATACCGGAATCCCA+AGG - Chr8:80771652-80771671 None:intergenic 50.0%
GCAGATCTGGCAACAGAAGA+CGG + Chr8:80773363-80773382 MsG0880046995.01.T01:CDS 50.0%
GGAGAGAGAGGAATGGAGTA+AGG - Chr8:80770607-80770626 None:intergenic 50.0%
TATAGGGGGAGAGAGAGGAA+TGG - Chr8:80770614-80770633 None:intergenic 50.0%
TGCAACAAGCCTTGGGATTC+CGG + Chr8:80771640-80771659 MsG0880046995.01.T01:CDS 50.0%
TGCAAGTGTCTCTGTTGGCA+GGG + Chr8:80773207-80773226 MsG0880046995.01.T01:intron 50.0%
TGGGTAACCTGATAGGACCA+AGG - Chr8:80773474-80773493 None:intergenic 50.0%
TTAGAGCAGGGTCTGTTGAG+AGG + Chr8:80771456-80771475 MsG0880046995.01.T01:CDS 50.0%
TTCCTTAACTAGTGTCCCGG+GGG + Chr8:80771708-80771727 MsG0880046995.01.T01:intron 50.0%
! AGTGGTGGAAACTTGGTAGG+TGG + Chr8:80773289-80773308 MsG0880046995.01.T01:CDS 50.0%
! GGTGCGTGATTTGTGTGCTT+TGG + Chr8:80770506-80770525 MsG0880046995.01.T01:intron 50.0%
! GTGGTGGAAACTTGGTAGGT+GGG + Chr8:80773290-80773309 MsG0880046995.01.T01:CDS 50.0%
! TGCGTCAAGTGGTGGAAACT+TGG + Chr8:80773282-80773301 MsG0880046995.01.T01:CDS 50.0%
! TTCGAGAGGCACATCGAGTT+GGG + Chr8:80771431-80771450 MsG0880046995.01.T01:CDS 50.0%
!!! CTGTTTTGGGAGTGCTTCGT+CGG + Chr8:80773391-80773410 MsG0880046995.01.T01:CDS 50.0%
!!! GCCACTTTTCTCCTCTTCCA+AGG + Chr8:80772869-80772888 MsG0880046995.01.T01:intron 50.0%
!!! TGTTTTGGGAGTGCTTCGTC+GGG + Chr8:80773392-80773411 MsG0880046995.01.T01:CDS 50.0%
CCCCCTATATCAAGGTAGGG+TGG + Chr8:80770625-80770644 MsG0880046995.01.T01:CDS 55.0%
GGCATGTATGCGTCAAGTGG+TGG + Chr8:80773274-80773293 MsG0880046995.01.T01:CDS 55.0%
GGTCTATGGCTACCGTGGTA+GGG + Chr8:80773311-80773330 MsG0880046995.01.T01:CDS 55.0%
! CTTCGAGAGGCACATCGAGT+TGG + Chr8:80771430-80771449 MsG0880046995.01.T01:CDS 55.0%
! CTTTTGCCGGGACTCAACCA+TGG - Chr8:80771831-80771850 None:intergenic 55.0%
!!! GTTTTGGGAGTGCTTCGTCG+GGG + Chr8:80773393-80773412 MsG0880046995.01.T01:CDS 55.0%
AGGTGGGTCTATGGCTACCG+TGG + Chr8:80773306-80773325 MsG0880046995.01.T01:CDS 60.0%
GGGTCTATGGCTACCGTGGT+AGG + Chr8:80773310-80773329 MsG0880046995.01.T01:CDS 60.0%
TGCCCCCGGGACACTAGTTA+AGG - Chr8:80771713-80771732 None:intergenic 60.0%
!! TCGTCGGGGTACCGTTCATG+AGG + Chr8:80773407-80773426 MsG0880046995.01.T01:CDS 60.0%
! AACTAGTGTCCCGGGGGCAC+TGG + Chr8:80771714-80771733 MsG0880046995.01.T01:intron 65.0%
!! ACTAGTGTCCCGGGGGCACT+GGG + Chr8:80771715-80771734 MsG0880046995.01.T01:intron 65.0%
AACCAGTGCCCCAGTGCCCC+CGG - Chr8:80771727-80771746 None:intergenic 70.0%
!! CTAGTGTCCCGGGGGCACTG+GGG + Chr8:80771716-80771735 MsG0880046995.01.T01:intron 70.0%
ACCAGTGCCCCAGTGCCCCC+GGG - Chr8:80771726-80771745 None:intergenic 75.0%
!!! TCCCGGGGGCACTGGGGCAC+TGG + Chr8:80771722-80771741 MsG0880046995.01.T01:intron 80.0%
Chromosome Type Strat End Strand Name
Chr8 gene 80770294 80773742 80770294 ID=MsG0880046995.01;Name=MsG0880046995.01
Chr8 mRNA 80770294 80773742 80770294 ID=MsG0880046995.01.T01;Parent=MsG0880046995.01;Name=MsG0880046995.01.T01;_AED=0.36;_eAED=0.40;_QI=41|0.75|0.6|1|0.25|0.2|5|204|270
Chr8 exon 80773228 80773531 80773228 ID=MsG0880046995.01.T01:exon:10442;Parent=MsG0880046995.01.T01
Chr8 exon 80773564 80773742 80773564 ID=MsG0880046995.01.T01:exon:10443;Parent=MsG0880046995.01.T01
Chr8 five_prime_UTR 80770294 80770334 80770294 ID=MsG0880046995.01.T01:five_prime_utr;Parent=MsG0880046995.01.T01
Chr8 CDS 80770335 80770406 80770335 ID=MsG0880046995.01.T01:cds;Parent=MsG0880046995.01.T01
Chr8 CDS 80770507 80770647 80770507 ID=MsG0880046995.01.T01:cds;Parent=MsG0880046995.01.T01
Chr8 CDS 80771341 80771661 80771341 ID=MsG0880046995.01.T01:cds;Parent=MsG0880046995.01.T01
Chr8 CDS 80773228 80773506 80773228 ID=MsG0880046995.01.T01:cds;Parent=MsG0880046995.01.T01
Chr8 three_prime_UTR 80773507 80773531 80773507 ID=MsG0880046995.01.T01:three_prime_utr;Parent=MsG0880046995.01.T01
Chr8 three_prime_UTR 80773564 80773742 80773564 ID=MsG0880046995.01.T01:three_prime_utr;Parent=MsG0880046995.01.T01
Chr8 mRNA 80770294 80773740 80770294 ID=MsG0880046995.01.T02;Parent=MsG0880046995.01;Name=MsG0880046995.01.T02;_AED=0.36;_eAED=0.39;_QI=41|0.66|0.5|1|0.33|0.5|4|234|270
Chr8 exon 80773228 80773740 80773228 ID=MsG0880046995.01.T02:exon:10444;Parent=MsG0880046995.01.T02
Chr8 five_prime_UTR 80770294 80770334 80770294 ID=MsG0880046995.01.T02:five_prime_utr;Parent=MsG0880046995.01.T02
Chr8 CDS 80770335 80770406 80770335 ID=MsG0880046995.01.T02:cds;Parent=MsG0880046995.01.T02
Chr8 CDS 80770507 80770647 80770507 ID=MsG0880046995.01.T02:cds;Parent=MsG0880046995.01.T02
Chr8 CDS 80771341 80771661 80771341 ID=MsG0880046995.01.T02:cds;Parent=MsG0880046995.01.T02
Chr8 CDS 80773228 80773506 80773228 ID=MsG0880046995.01.T02:cds;Parent=MsG0880046995.01.T02
Chr8 three_prime_UTR 80773507 80773740 80773507 ID=MsG0880046995.01.T02:three_prime_utr;Parent=MsG0880046995.01.T02
Gene Sequence

>MsG0880046995.01.T02

ATGGCAGATTCTAGTTCATTCTTCATCTCCCTTCCTGAAGATATCAACTTCAAAATCGCTTCACTTCTTCAGGTGCGTGATTTGTGTGCTTTGGGTTGTTGTTCCAAATTCTGGAGACAACTATGCTTCTCAGATTCCATTTGGCACTCTCTTGTCACTAACAGATGGCCCTTACTCCATTCCTCTCTCTCCCCCTATATCAAGGTAGGGTGGATATTGAGAAGGTTTGGTTTGGGTAGTGTTATTACTGTTATGTGGTGTAATTATTTGGAGTTTGGATTGCAGACATGGAGAAGATTGTACTTCGAGAGGCACATCGAGTTGGGAATTAGAGCAGGGTCTGTTGAGAGGTTTTTGAAAGCATGTTCGCGTAATGAATCGCTTGAGGTTGGAGACTATCTGCAAGCCTTTGAAATCATTAATGGCGCAAGGTTTGGTTTTGAAGACATCCAGAGGTTCCTGTTTAAACCTCAAATGAATGTGTTGCTTAACTTGGTTGGTGTGCATTATTGTGCAACAAGCCTTGGGATTCCGGGTGATGATCTTCTAGAAGCCCTTCGGACTTGTGAGATATCAAATCGGCATGTATGCGTCAAGTGGTGGAAACTTGGTAGGTGGGTCTATGGCTACCGTGGTAGGGATGAGTTACTTTTTCGTTGGGTTTCTTTGGCAGATCTGGCAACAGAAGACGGTGAGTCTGTTTTGGGAGTGCTTCGTCGGGGTACCGTTCATGAGGTTTTACGTGTTCAGATATCTGCCATTGGTCATAAGTCAATTCCTTGGTCCTATCAGGTTACCCAGAGATTGGAATAG

>MsG0880046995.01.T01

ATGGCAGATTCTAGTTCATTCTTCATCTCCCTTCCTGAAGATATCAACTTCAAAATCGCTTCACTTCTTCAGGTGCGTGATTTGTGTGCTTTGGGTTGTTGTTCCAAATTCTGGAGACAACTATGCTTCTCAGATTCCATTTGGCACTCTCTTGTCACTAACAGATGGCCCTTACTCCATTCCTCTCTCTCCCCCTATATCAAGGTAGGGTGGATATTGAGAAGGTTTGGTTTGGGTAGTGTTATTACTGTTATGTGGTGTAATTATTTGGAGTTTGGATTGCAGACATGGAGAAGATTGTACTTCGAGAGGCACATCGAGTTGGGAATTAGAGCAGGGTCTGTTGAGAGGTTTTTGAAAGCATGTTCGCGTAATGAATCGCTTGAGGTTGGAGACTATCTGCAAGCCTTTGAAATCATTAATGGCGCAAGGTTTGGTTTTGAAGACATCCAGAGGTTCCTGTTTAAACCTCAAATGAATGTGTTGCTTAACTTGGTTGGTGTGCATTATTGTGCAACAAGCCTTGGGATTCCGGGTGATGATCTTCTAGAAGCCCTTCGGACTTGTGAGATATCAAATCGGCATGTATGCGTCAAGTGGTGGAAACTTGGTAGGTGGGTCTATGGCTACCGTGGTAGGGATGAGTTACTTTTTCGTTGGGTTTCTTTGGCAGATCTGGCAACAGAAGACGGTGAGTCTGTTTTGGGAGTGCTTCGTCGGGGTACCGTTCATGAGGTTTTACGTGTTCAGATATCTGCCATTGGTCATAAGTCAATTCCTTGGTCCTATCAGGTTACCCAGAGATTGGAATAG

Protein sequence

>MsG0880046995.01.T02

MADSSSFFISLPEDINFKIASLLQVRDLCALGCCSKFWRQLCFSDSIWHSLVTNRWPLLHSSLSPYIKVGWILRRFGLGSVITVMWCNYLEFGLQTWRRLYFERHIELGIRAGSVERFLKACSRNESLEVGDYLQAFEIINGARFGFEDIQRFLFKPQMNVLLNLVGVHYCATSLGIPGDDLLEALRTCEISNRHVCVKWWKLGRWVYGYRGRDELLFRWVSLADLATEDGESVLGVLRRGTVHEVLRVQISAIGHKSIPWSYQVTQRLE*

>MsG0880046995.01.T01

MADSSSFFISLPEDINFKIASLLQVRDLCALGCCSKFWRQLCFSDSIWHSLVTNRWPLLHSSLSPYIKVGWILRRFGLGSVITVMWCNYLEFGLQTWRRLYFERHIELGIRAGSVERFLKACSRNESLEVGDYLQAFEIINGARFGFEDIQRFLFKPQMNVLLNLVGVHYCATSLGIPGDDLLEALRTCEISNRHVCVKWWKLGRWVYGYRGRDELLFRWVSLADLATEDGESVLGVLRRGTVHEVLRVQISAIGHKSIPWSYQVTQRLE*